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For: Li FY, Yuan JM, Mou CY. Mechanical unfolding and refolding of proteins: an off-lattice model study. Phys Rev E Stat Nonlin Soft Matter Phys 2001;63:021905. [PMID: 11308516 DOI: 10.1103/physreve.63.021905] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/1999] [Revised: 07/28/2000] [Indexed: 05/23/2023]
Number Cited by Other Article(s)
1
Kim S, Lee NK, Chae MK, Johner A, Park JM. Translocation of Hydrophobic Polyelectrolytes under Electrical Field: Molecular Dynamics Study. Polymers (Basel) 2023;15:polym15112550. [PMID: 37299349 DOI: 10.3390/polym15112550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Revised: 05/26/2023] [Accepted: 05/27/2023] [Indexed: 06/12/2023]  Open
2
Wu C, Lim JY, Fuller GG, Cegelski L. Quantitative analysis of amyloid-integrated biofilms formed by uropathogenic Escherichia coli at the air-liquid interface. Biophys J 2013;103:464-471. [PMID: 22947862 DOI: 10.1016/j.bpj.2012.06.049] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2012] [Revised: 06/18/2012] [Accepted: 06/27/2012] [Indexed: 11/19/2022]  Open
3
Wales DJ, Head-Gordon T. Evolution of the potential energy landscape with static pulling force for two model proteins. J Phys Chem B 2012;116:8394-411. [PMID: 22432920 DOI: 10.1021/jp211806z] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
4
Luccioli S, Imparato A, Lepri S, Piazza F, Torcini A. Discrete breathers in a realistic coarse-grained model of proteins. Phys Biol 2011;8:046008. [PMID: 21670494 DOI: 10.1088/1478-3975/8/4/046008] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
5
King WT, Su M, Yang G. Monte Carlo simulation of mechanical unfolding of proteins based on a simple two-state model. Int J Biol Macromol 2010;46:159-66. [PMID: 20004685 PMCID: PMC2822090 DOI: 10.1016/j.ijbiomac.2009.12.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2009] [Revised: 12/01/2009] [Accepted: 12/02/2009] [Indexed: 11/27/2022]
6
Luccioli S, Imparato A, Mitternacht S, Irbäck A, Torcini A. Unfolding times for proteins in a force clamp. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2010;81:010902. [PMID: 20365316 DOI: 10.1103/physreve.81.010902] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2009] [Revised: 11/09/2009] [Indexed: 05/29/2023]
7
A STEERED MOLECULAR DYNAMICS STUDY ON ELASTIC BEHAVIOR OF POLYETHYLENE CHAINS. ACTA POLYM SIN 2008. [DOI: 10.3724/sp.j.1105.2008.00448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
8
Luccioli S, Imparato A, Torcini A. Free-energy landscape of mechanically unfolded model proteins: extended Jarzinsky versus inherent structure reconstruction. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008;78:031907. [PMID: 18851065 DOI: 10.1103/physreve.78.031907] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2008] [Revised: 08/13/2008] [Indexed: 05/26/2023]
9
Imparato A, Luccioli S, Torcini A. Reconstructing the free-energy landscape of a mechanically unfolded model protein. PHYSICAL REVIEW LETTERS 2007;99:168101. [PMID: 17995298 DOI: 10.1103/physrevlett.99.168101] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2007] [Indexed: 05/25/2023]
10
A steered molecular dynamics study on peptide sequence prediction from force-extension profiles. POLYMER 2007. [DOI: 10.1016/j.polymer.2007.03.046] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
11
Lacks DJ. Energy landscape distortions and the mechanical unfolding of proteins. Biophys J 2005;88:3494-501. [PMID: 15731385 PMCID: PMC1305495 DOI: 10.1529/biophysj.104.051953] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
12
Dimian M, Mayergoyz ID. Spectral density analysis of nonlinear hysteretic systems. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2004;70:046124. [PMID: 15600477 DOI: 10.1103/physreve.70.046124] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2004] [Indexed: 05/24/2023]
13
Kast SM. Comment on “Comment on ‘Constant temperature molecular dynamics simulations by means of a stochastic collision model. II. The harmonic oscillator’ [J. Chem. Phys. 104, 3732 (1996)]” [J. Chem. Phys. 106, 1646 (1997)]. J Chem Phys 2004;120:4991-2. [PMID: 15267362 DOI: 10.1063/1.1644801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
14
Cheung MS, Chavez LL, Onuchic JN. The energy landscape for protein folding and possible connections to function. POLYMER 2004. [DOI: 10.1016/j.polymer.2003.10.082] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
15
Li PC, Makarov DE. Theoretical studies of the mechanical unfolding of the muscle protein titin: Bridging the time-scale gap between simulation and experiment. J Chem Phys 2003. [DOI: 10.1063/1.1615233] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
16
Brockwell DJ, Paci E, Zinober RC, Beddard GS, Olmsted PD, Smith DA, Perham RN, Radford SE. Pulling geometry defines the mechanical resistance of a beta-sheet protein. Nat Struct Mol Biol 2003;10:731-7. [PMID: 12923573 DOI: 10.1038/nsb968] [Citation(s) in RCA: 269] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2003] [Accepted: 05/23/2003] [Indexed: 11/09/2022]
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