Neuromorphometric characterization with shape functionals

Quantitative analysis of the Golgi impregnated human (neo)striatal neurons: Observation of the morphological characteristics followed by an emphasis on the functional diversity of cells

BACKGROUND

The (neo)striatum is the major input structure of the basal nuclei, which is involved in the execution of voluntary movements, but also in controlling the processes that lead to the movement, such as motivation and cognition. The striatum provides its function through an interaction between projection neurons and interneurons. The aim of this study was to quantify the morphological properties of neurons in the precommissural putamen and precommissural caudate nucleus head and to evaluate whether there is a difference in cell morphology between different cell groups within one part and between the same cell groups within different parts of the striatum.

METHODS

A total of 652 neuronal images of human striatum were observed. The features of the neuronal morphology (soma size, dendritic field size, shape of neuronal image, dendritic curviness, dendritic branching complexity) were observed by determining appropriate parameters of digital images of neurons.

RESULTS

According to the presence of spines on the soma and/or dendrites, neurons were qualitatively classified into 446 spiny and 206 aspiny cells. The analysis of the distribution of the dendritic field area shows that spiny and aspiny neurons from both parts of the neostriatum can be decomposed into two distributions, which means that they can be classified into subgroups. A quantitative analysis of the spiny/aspiny neurons in the human putamen or caudate nucleus head has shown that there is a statistically significant difference between them. By comparing the morphology of neurons of the same group between different parts of the human neostriatum (putamen and caudate nucleus), it was also determined that there is a statistically significant difference.

CONCLUSION

Since the morphology and function of neurons are in close correlation, it can be assumed that different groups of neurons in the human striatum might support functional diversity of the studied area.

Morphological Neuron Classification Based on Dendritic Tree Hierarchy

The shape of a neuron can reveal interesting properties about its function. Therefore, morphological neuron characterization can contribute to a better understanding of how the brain works. However, one of the great challenges of neuroanatomy is the definition of morphological properties that can be used for categorizing neurons. This paper proposes a new methodology for neuron morphological analysis by considering different hierarchies of the dendritic tree for characterizing and categorizing neuronal cells. The methodology consists in using different strategies for decomposing the dendritic tree along its hierarchies, allowing the identification of relevant parts (possibly related to specific neuronal functions) for classification tasks. A set of more than 5000 neurons corresponding to 10 classes were examined with supervised classification algorithms based on this strategy. It was found that classification accuracies similar to those obtained by using whole neurons can be achieved by considering only parts of the neurons. Branches close to the soma were found to be particularly relevant for classification.

Integral-geometry characterization of photobiomodulation effects on retinal vessel morphology

The morphological characterization of quasi-planar structures represented by gray-scale images is challenging when object identification is sub-optimal due to registration artifacts. We propose two alternative procedures that enhances object identification in the integral-geometry morphological image analysis (MIA) framework. The first variant streamlines the framework by introducing an active contours segmentation process whose time step is recycled as a multi-scale parameter. In the second variant, we used the refined object identification produced in the first variant to perform the standard MIA with exact dilation radius as multi-scale parameter. Using this enhanced MIA we quantify the extent of vaso-obliteration in oxygen-induced retinopathic vascular growth, the preventative effect (by photobiomodulation) of exposure during tissue development to near-infrared light (NIR, 670 nm), and the lack of adverse effects due to exposure to NIR light.

Analysis of image heterogeneity using 2D Minkowski functionals detects tumor responses to treatment

PURPOSE

The acquisition of ever increasing volumes of high resolution magnetic resonance imaging (MRI) data has created an urgent need to develop automated and objective image analysis algorithms that can assist in determining tumor margins, diagnosing tumor stage, and detecting treatment response.

METHODS

We have shown previously that Minkowski functionals, which are precise morphological and structural descriptors of image heterogeneity, can be used to enhance the detection, in T1 -weighted images, of a targeted Gd(3+) -chelate-based contrast agent for detecting tumor cell death. We have used Minkowski functionals here to characterize heterogeneity in T2 -weighted images acquired before and after drug treatment, and obtained without contrast agent administration.

RESULTS

We show that Minkowski functionals can be used to characterize the changes in image heterogeneity that accompany treatment of tumors with a vascular disrupting agent, combretastatin A4-phosphate, and with a cytotoxic drug, etoposide.

CONCLUSIONS

Parameterizing changes in the heterogeneity of T2 -weighted images can be used to detect early responses of tumors to drug treatment, even when there is no change in tumor size. The approach provides a quantitative and therefore objective assessment of treatment response that could be used with other types of MR image and also with other imaging modalities.

Shape, connectedness and dynamics in neuronal networks

The morphology of neurons is directly related to several aspects of the nervous system, including its connectedness, health, development, evolution, dynamics and, ultimately, behavior. Such interplays of the neuronal morphology can be understood within the more general shape-function paradigm. The current article reviews, in an introductory way, some key issues regarding the role of neuronal morphology in the nervous system, with emphasis on works developed in the authors' group. The following topics are addressed: (a) characterization of neuronal shape; (b) stochastic synthesis of neurons and neuronal systems; (c) characterization of the connectivity of neuronal networks by using complex networks concepts; and (d) investigations of influences of neuronal shape on network dynamics. The presented concepts and methods are useful also for several other multiple object systems, such as protein-protein interaction, tissues, aggregates and polymers.

Self-referred approach to lacunarity

This paper describes an approach to lacunarity which adopts the pattern under analysis as the reference for the sliding window procedure. The superiority of such a scheme with respect to more traditional methodologies, especially when dealing with finite-size objects, is established and illustrated through applications to diffusion limited aggregation pattern characterization. It is also shown that, given the enhanced accuracy and sensitivity of this scheme, the shape of the window becomes an important parameter, with advantage for circular windows.