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Ariga K, Song J, Kawakami K. Molecular machines working at interfaces: physics, chemistry, evolution and nanoarchitectonics. Phys Chem Chem Phys 2024; 26:13532-13560. [PMID: 38654597 DOI: 10.1039/d4cp00724g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
As a post-nanotechnology concept, nanoarchitectonics combines nanotechnology with advanced materials science. Molecular machines made by assembling molecular units and their organizational bodies are also products of nanoarchitectonics. They can be regarded as the smallest functional materials. Originally, studies on molecular machines analyzed the average properties of objects dispersed in solution by spectroscopic methods. Researchers' playgrounds partially shifted to solid interfaces, because high-resolution observation of molecular machines is usually done on solid interfaces under high vacuum and cryogenic conditions. Additionally, to ensure the practical applicability of molecular machines, operation under ambient conditions is necessary. The latter conditions are met in dynamic interfacial environments such as the surface of water at room temperature. According to these backgrounds, this review summarizes the trends of molecular machines that continue to evolve under the concept of nanoarchitectonics in interfacial environments. Some recent examples of molecular machines in solution are briefly introduced first, which is followed by an overview of studies of molecular machines and similar supramolecular structures in various interfacial environments. The interfacial environments are classified into (i) solid interfaces, (ii) liquid interfaces, and (iii) various material and biological interfaces. Molecular machines are expanding their activities from the static environment of a solid interface to the more dynamic environment of a liquid interface. Molecular machines change their field of activity while maintaining their basic functions and induce the accumulation of individual molecular machines into macroscopic physical properties molecular machines through macroscopic mechanical motions can be employed to control molecular machines. Moreover, research on molecular machines is not limited to solid and liquid interfaces; interfaces with living organisms are also crucial.
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Affiliation(s)
- Katsuhiko Ariga
- Research Center for Materials Nanoarchitectonics, National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba 305-0044, Japan.
- Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwa-no-ha, Kashiwa 277-8561, Japan
| | - Jingwen Song
- Research Center for Functional Materials, National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba 305-0044, Ibaraki, Japan
| | - Kohsaku Kawakami
- Research Center for Functional Materials, National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba 305-0044, Ibaraki, Japan
- Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8577, Ibaraki, Japan
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Patel K, Stark H. Fluid interfaces laden by force dipoles: towards active matter-driven microfluidic flows. SOFT MATTER 2023; 19:2241-2253. [PMID: 36912619 DOI: 10.1039/d3sm00043e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
In recent years, nonlinear microfluidics in combination with lab-on-a-chip devices has opened a new avenue for chemical and biomedical applications such as droplet formation and cell sorting. In this article, we integrate ideas from active matter into a microfluidic setting, where two fluid layers with identical densities but different viscosities flow through a microfluidic channel. Most importantly, the fluid interface is laden with active particles that act with dipolar forces on the adjacent fluids and thereby generate flows. We perform lattice-Boltzmann simulations and combine them with phase field dynamics of the interface and an advection-diffusion equation for the density of active particles. We show that only contractile force dipoles can destabilize the flat fluid interface. It develops a viscous finger from which droplets break up. For interfaces with non-zero surface tension, a critical value of activity equal to the surface tension is necessary to trigger the instability. Since activity depends on the density of force dipoles, the interface can develop steady deformation. Lastly, we demonstrate how to control droplet formation using switchable activity.
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Affiliation(s)
- Kuntal Patel
- Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany.
| | - Holger Stark
- Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany.
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Chakraborty R, Maiti A, Sharma N, Dey KK. Active matter dynamics in confined microfluidic environments. PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE 2022; 186:245-265. [PMID: 35033287 DOI: 10.1016/bs.pmbts.2021.07.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The field of active matter is a nascent area of research in soft condensed matter physics, which is drawing on the expertise of researchers from diverse disciplines. Small scale active particles-both inorganic and biological-display non-trivial emergent dynamics and interactions that could help us understand complex biological processes and phenomena. Recently, using microfluidic technologies, several research groups have performed important experimental and theoretical studies to understand the behavior of self-propelled particles and molecular active matter within confined environments-to glean a fundamental understanding of the cellular processes occurring under ultra-low Reynolds number conditions. In this chapter, we would like to review applications of microfluidics in active matter research, highlighting a few important theoretical and experimental investigations. We will conclude the discussion with a note on the future of this field mentioning a few open questions that are at the forefront of our minds.
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Affiliation(s)
- Rik Chakraborty
- Discipline of Physics, Indian Institute of Technology Gandhinagar, Palaj, Gandhinagar, Gujarat, India
| | - Arnab Maiti
- Discipline of Physics, Indian Institute of Technology Gandhinagar, Palaj, Gandhinagar, Gujarat, India
| | - Nikita Sharma
- Discipline of Physics, Indian Institute of Technology Gandhinagar, Palaj, Gandhinagar, Gujarat, India
| | - Krishna Kanti Dey
- Discipline of Physics, Indian Institute of Technology Gandhinagar, Palaj, Gandhinagar, Gujarat, India.
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Dey KK. Dynamic Coupling at Low Reynolds Number. Angew Chem Int Ed Engl 2019; 58:2208-2228. [DOI: 10.1002/anie.201804599] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Indexed: 01/10/2023]
Affiliation(s)
- Krishna Kanti Dey
- Discipline of PhysicsIndian Institute of Technology Gandhinagar Gandhinagar Gujarat 382355 India
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Affiliation(s)
- Krishna Kanti Dey
- Discipline of Physics; Indian Institute of Technology Gandhinagar; Gandhinagar Gujarat 382355 Indien
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Thiele U. Recent advances in and future challenges for mesoscopic hydrodynamic modelling of complex wetting. Colloids Surf A Physicochem Eng Asp 2018. [DOI: 10.1016/j.colsurfa.2018.05.049] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Pototsky A, Thiele U, Stark H. Mode instabilities and dynamic patterns in a colony of self-propelled surfactant particles covering a thin liquid layer. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2016; 39:51. [PMID: 27145959 DOI: 10.1140/epje/i2016-16051-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2015] [Accepted: 03/25/2016] [Indexed: 06/05/2023]
Abstract
We consider a colony of point-like self-propelled surfactant particles (swimmers) without direct interactions that cover a thin liquid layer on a solid support. The particles predominantly swim normal to the free film surface with only a small component parallel to the film surface. The coupled dynamics of the swimmer density and film height profile is captured in a long-wave model allowing for diffusive and convective transport of the swimmers (including rotational diffusion). The dynamics of the film height profile is determined by i) the upward pushing force of the swimmers onto the liquid-gas interface, ii) the solutal Marangoni force due to gradients in the swimmer concentration, and iii) the rotational diffusion of the swimmers together with the in-plane active motion. After reviewing and extending the analysis of the linear stability of the uniform state, we analyse the fully nonlinear dynamic equations and show that point-like swimmers, which only interact via long-wave deformations of the liquid film, self-organise in highly regular (standing, travelling, and modulated waves) and various irregular patterns.
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Affiliation(s)
- Andrey Pototsky
- Department of Mathematics, Faculty of Science Engineering and Technology, Swinburne University of Technology, 3122, Hawthorn, Victoria, Australia
| | - Uwe Thiele
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm Klemm Str. 9, 48149, Münster, Germany.
- Center of Nonlinear Science (CeNoS), Westfälische Wilhelms Universität Münster, Corrensstr. 2, 48149, Münster, Germany.
| | - Holger Stark
- Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623, Berlin, Germany
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Xu X, Thiele U, Qian T. A Variational approach to thin film hydrodynamics of binary mixtures. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2015; 27:085005. [PMID: 25651053 DOI: 10.1088/0953-8984/27/8/085005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
In order to model the dynamics of thin films of mixtures, solutions, and suspensions, a thermodynamically consistent formulation is needed such that various coexisting dissipative processes with cross couplings can be correctly described in the presence of capillarity, wettability, and mixing effects. In the present work, we apply Onsager's variational principle to the formulation of thin film hydrodynamics for binary fluid mixtures. We first derive the dynamic equations in two spatial dimensions, one along the substrate and the other normal to the substrate. Then, using long-wave asymptotics, we derive the thin film equations in one spatial dimension along the substrate. This enables us to establish the connection between the present variational approach and the gradient dynamics formulation for thin films. It is shown that for the mobility matrix in the gradient dynamics description, Onsager's reciprocal symmetry is automatically preserved by the variational derivation. Furthermore, using local hydrodynamic variables, our variational approach is capable of introducing diffusive dissipation beyond the limit of dilute solute. Supplemented with a Flory-Huggins-type mixing free energy, our variational approach leads to a thin film model that treats solvent and solute in a symmetric manner. Our approach can be further generalized to include more complicated free energy and additional dissipative processes.
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Affiliation(s)
- Xinpeng Xu
- Department of Mathematics, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong
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Pototsky A, Thiele U, Stark H. Stability of liquid films covered by a carpet of self-propelled surfactant particles. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:030401. [PMID: 25314381 DOI: 10.1103/physreve.90.030401] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2014] [Indexed: 06/04/2023]
Abstract
We consider a carpet of self-propelled particles at the liquid-gas interface of a liquid film on a solid substrate. The particles exert an excess pressure on the interface and also move along the interface while the swimming direction changes due to rotational diffusion. We study the intricate influence of these self-propelled insoluble surfactants on the stability of the film surface and show that depending on the strength of in-surface rotational diffusion and the absolute value of the in-surface swimming velocity, several characteristic instability modes can occur. In particular, rotational diffusion can either stabilize the film or induce instabilities of different character.
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Affiliation(s)
- Andrey Pototsky
- Department of Mathematics, Faculty of Science Engineering and Technology, Swinburne University of Technology, Hawthorn, Victoria 3122, Australia
| | - Uwe Thiele
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm Klemm Straße 9, D-48149 Münster, Germany
| | - Holger Stark
- Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany
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