1
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Lu Y, Rinzel J. Firing rate models for gamma oscillations in I-I and E-I networks. J Comput Neurosci 2024; 52:247-266. [PMID: 39160322 DOI: 10.1007/s10827-024-00877-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 07/15/2024] [Accepted: 08/05/2024] [Indexed: 08/21/2024]
Abstract
Firing rate models for describing the mean-field activities of neuronal ensembles can be used effectively to study network function and dynamics, including synchronization and rhythmicity of excitatory-inhibitory populations. However, traditional Wilson-Cowan-like models, even when extended to include an explicit dynamic synaptic activation variable, are found unable to capture some dynamics such as Interneuronal Network Gamma oscillations (ING). Use of an explicit delay is helpful in simulations at the expense of complicating mathematical analysis. We resolve this issue by introducing a dynamic variable, u, that acts as an effective delay in the negative feedback loop between firing rate (r) and synaptic gating of inhibition (s). In effect, u endows synaptic activation with second order dynamics. With linear stability analysis, numerical branch-tracking and simulations, we show that our r-u-s rate model captures some key qualitative features of spiking network models for ING. We also propose an alternative formulation, a v-u-s model, in which mean membrane potential v satisfies an averaged current-balance equation. Furthermore, we extend the framework to E-I networks. With our six-variable v-u-s model, we demonstrate in firing rate models the transition from Pyramidal-Interneuronal Network Gamma (PING) to ING by increasing the external drive to the inhibitory population without adjusting synaptic weights. Having PING and ING available in a single network, without invoking synaptic blockers, is plausible and natural for explaining the emergence and transition of two different types of gamma oscillations.
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Affiliation(s)
- Yiqing Lu
- Courant Institute of Mathematical Sciences, New York University, New York, NY, USA
| | - John Rinzel
- Courant Institute of Mathematical Sciences, New York University, New York, NY, USA.
- Center for Neural Science, New York University, New York, NY, USA.
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2
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Omel'chenko OE, Laing CR. Activity patterns in ring networks of quadratic integrate-and-fire neurons with synaptic and gap junction coupling. Phys Rev E 2024; 110:034411. [PMID: 39425332 DOI: 10.1103/physreve.110.034411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Accepted: 08/27/2024] [Indexed: 10/21/2024]
Abstract
We consider a ring network of quadratic integrate-and-fire neurons with nonlocal synaptic and gap junction coupling. The corresponding neural field model supports solutions such as standing and traveling waves, and also lurching waves. We show that many of these solutions satisfy self-consistency equations which can be used to follow them as parameters are varied. We perform numerical bifurcation analysis of the neural field model, concentrating on the effects of varying gap junction coupling strength. Our methods are generally applicable to a wide variety of networks of quadratic integrate-and-fire neurons.
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3
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Smirnov LA, Munyayev VO, Bolotov MI, Osipov GV, Belykh I. How synaptic function controls critical transitions in spiking neuron networks: insight from a Kuramoto model reduction. FRONTIERS IN NETWORK PHYSIOLOGY 2024; 4:1423023. [PMID: 39185374 PMCID: PMC11341377 DOI: 10.3389/fnetp.2024.1423023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Accepted: 07/16/2024] [Indexed: 08/27/2024]
Abstract
The dynamics of synaptic interactions within spiking neuron networks play a fundamental role in shaping emergent collective behavior. This paper studies a finite-size network of quadratic integrate-and-fire neurons interconnected via a general synaptic function that accounts for synaptic dynamics and time delays. Through asymptotic analysis, we transform this integrate-and-fire network into the Kuramoto-Sakaguchi model, whose parameters are explicitly expressed via synaptic function characteristics. This reduction yields analytical conditions on synaptic activation rates and time delays determining whether the synaptic coupling is attractive or repulsive. Our analysis reveals alternating stability regions for synchronous and partially synchronous firing, dependent on slow synaptic activation and time delay. We also demonstrate that the reduced microscopic model predicts the emergence of synchronization, weakly stable cyclops states, and non-stationary regimes remarkably well in the original integrate-and-fire network and its theta neuron counterpart. Our reduction approach promises to open the door to rigorous analysis of rhythmogenesis in networks with synaptic adaptation and plasticity.
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Affiliation(s)
- Lev A. Smirnov
- Department of Control Theory, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Vyacheslav O. Munyayev
- Department of Control Theory, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Maxim I. Bolotov
- Department of Control Theory, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Grigory V. Osipov
- Department of Control Theory, Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Igor Belykh
- Department of Mathematics and Statistics and Neuroscience Institute, Georgia State University, Atlanta, GA, United States
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4
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Pietras B. Pulse Shape and Voltage-Dependent Synchronization in Spiking Neuron Networks. Neural Comput 2024; 36:1476-1540. [PMID: 39028958 DOI: 10.1162/neco_a_01680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Accepted: 03/18/2024] [Indexed: 07/21/2024]
Abstract
Pulse-coupled spiking neural networks are a powerful tool to gain mechanistic insights into how neurons self-organize to produce coherent collective behavior. These networks use simple spiking neuron models, such as the θ-neuron or the quadratic integrate-and-fire (QIF) neuron, that replicate the essential features of real neural dynamics. Interactions between neurons are modeled with infinitely narrow pulses, or spikes, rather than the more complex dynamics of real synapses. To make these networks biologically more plausible, it has been proposed that they must also account for the finite width of the pulses, which can have a significant impact on the network dynamics. However, the derivation and interpretation of these pulses are contradictory, and the impact of the pulse shape on the network dynamics is largely unexplored. Here, I take a comprehensive approach to pulse coupling in networks of QIF and θ-neurons. I argue that narrow pulses activate voltage-dependent synaptic conductances and show how to implement them in QIF neurons such that their effect can last through the phase after the spike. Using an exact low-dimensional description for networks of globally coupled spiking neurons, I prove for instantaneous interactions that collective oscillations emerge due to an effective coupling through the mean voltage. I analyze the impact of the pulse shape by means of a family of smooth pulse functions with arbitrary finite width and symmetric or asymmetric shapes. For symmetric pulses, the resulting voltage coupling is not very effective in synchronizing neurons, but pulses that are slightly skewed to the phase after the spike readily generate collective oscillations. The results unveil a voltage-dependent spike synchronization mechanism at the heart of emergent collective behavior, which is facilitated by pulses of finite width and complementary to traditional synaptic transmission in spiking neuron networks.
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Affiliation(s)
- Bastian Pietras
- Department of Information and Communication Technologies, Universitat Pompeu Fabra, 08018, Barcelona, Spain
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5
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Papo D, Buldú JM. Does the brain behave like a (complex) network? I. Dynamics. Phys Life Rev 2024; 48:47-98. [PMID: 38145591 DOI: 10.1016/j.plrev.2023.12.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 12/10/2023] [Indexed: 12/27/2023]
Abstract
Graph theory is now becoming a standard tool in system-level neuroscience. However, endowing observed brain anatomy and dynamics with a complex network structure does not entail that the brain actually works as a network. Asking whether the brain behaves as a network means asking whether network properties count. From the viewpoint of neurophysiology and, possibly, of brain physics, the most substantial issues a network structure may be instrumental in addressing relate to the influence of network properties on brain dynamics and to whether these properties ultimately explain some aspects of brain function. Here, we address the dynamical implications of complex network, examining which aspects and scales of brain activity may be understood to genuinely behave as a network. To do so, we first define the meaning of networkness, and analyse some of its implications. We then examine ways in which brain anatomy and dynamics can be endowed with a network structure and discuss possible ways in which network structure may be shown to represent a genuine organisational principle of brain activity, rather than just a convenient description of its anatomy and dynamics.
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Affiliation(s)
- D Papo
- Department of Neuroscience and Rehabilitation, Section of Physiology, University of Ferrara, Ferrara, Italy; Center for Translational Neurophysiology, Fondazione Istituto Italiano di Tecnologia, Ferrara, Italy.
| | - J M Buldú
- Complex Systems Group & G.I.S.C., Universidad Rey Juan Carlos, Madrid, Spain
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6
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Zheng Z, Xu C, Fan J, Liu M, Chen X. Order parameter dynamics in complex systems: From models to data. CHAOS (WOODBURY, N.Y.) 2024; 34:022101. [PMID: 38341762 DOI: 10.1063/5.0180340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 12/14/2023] [Indexed: 02/13/2024]
Abstract
Collective ordering behaviors are typical macroscopic manifestations embedded in complex systems and can be ubiquitously observed across various physical backgrounds. Elements in complex systems may self-organize via mutual or external couplings to achieve diverse spatiotemporal coordinations. The order parameter, as a powerful quantity in describing the transition to collective states, may emerge spontaneously from large numbers of degrees of freedom through competitions. In this minireview, we extensively discussed the collective dynamics of complex systems from the viewpoint of order-parameter dynamics. A synergetic theory is adopted as the foundation of order-parameter dynamics, and it focuses on the self-organization and collective behaviors of complex systems. At the onset of macroscopic transitions, slow modes are distinguished from fast modes and act as order parameters, whose evolution can be established in terms of the slaving principle. We explore order-parameter dynamics in both model-based and data-based scenarios. For situations where microscopic dynamics modeling is available, as prototype examples, synchronization of coupled phase oscillators, chimera states, and neuron network dynamics are analytically studied, and the order-parameter dynamics is constructed in terms of reduction procedures such as the Ott-Antonsen ansatz, the Lorentz ansatz, and so on. For complicated systems highly challenging to be well modeled, we proposed the eigen-microstate approach (EMP) to reconstruct the macroscopic order-parameter dynamics, where the spatiotemporal evolution brought by big data can be well decomposed into eigenmodes, and the macroscopic collective behavior can be traced by Bose-Einstein condensation-like transitions and the emergence of dominant eigenmodes. The EMP is successfully applied to some typical examples, such as phase transitions in the Ising model, climate dynamics in earth systems, fluctuation patterns in stock markets, and collective motion in living systems.
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Affiliation(s)
- Zhigang Zheng
- Institute of Systems Science, Huaqiao University, Xiamen 361021, China and College of Information Science and Engineering, Huaqiao University, Xiamen 361021, China
| | - Can Xu
- Institute of Systems Science, Huaqiao University, Xiamen 361021, China and College of Information Science and Engineering, Huaqiao University, Xiamen 361021, China
| | - Jingfang Fan
- School of Systems Science, Beijing Normal University, Beijing 100875, China and Institute of Nonequilibrium Systems, Beijing Normal University, Beijing 100875, China
| | - Maoxin Liu
- School of Systems Science, Beijing Normal University, Beijing 100875, China and Institute of Nonequilibrium Systems, Beijing Normal University, Beijing 100875, China
| | - Xiaosong Chen
- School of Systems Science, Beijing Normal University, Beijing 100875, China and Institute of Nonequilibrium Systems, Beijing Normal University, Beijing 100875, China
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7
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Goldobin DS, Permyakova EV, Klimenko LS. Macroscopic behavior of populations of quadratic integrate-and-fire neurons subject to non-Gaussian white noise. CHAOS (WOODBURY, N.Y.) 2024; 34:013121. [PMID: 38242105 DOI: 10.1063/5.0172735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Accepted: 12/19/2023] [Indexed: 01/21/2024]
Abstract
We study macroscopic behavior of populations of quadratic integrate-and-fire neurons subject to non-Gaussian noises; we argue that these noises must be α-stable whenever they are delta-correlated (white). For the case of additive-in-voltage noise, we derive the governing equation of the dynamics of the characteristic function of the membrane voltage distribution and construct a linear-in-noise perturbation theory. Specifically for the recurrent network with global synaptic coupling, we theoretically calculate the observables: population-mean membrane voltage and firing rate. The theoretical results are underpinned by the results of numerical simulation for homogeneous and heterogeneous populations. The possibility of the generalization of the pseudocumulant approach to the case of a fractional α is examined for both irrational and fractional rational α. This examination seemingly suggests the pseudocumulant approach or its modifications to be employable only for the integer values of α=1 (Cauchy noise) and 2 (Gaussian noise) within the physically meaningful range (0;2]. Remarkably, the analysis for fractional α indirectly revealed that, for the Gaussian noise, the minimal asymptotically rigorous model reduction must involve three pseudocumulants and the two-pseudocumulant model reduction is an artificial approximation. This explains a surprising gain of accuracy for the three-pseudocumulant models as compared to the two-pseudocumulant ones reported in the literature.
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Affiliation(s)
- Denis S Goldobin
- Institute of Continuous Media Mechanics, UB RAS, Academician Korolev Street 1, 614013 Perm, Russia
- Department of Control Theory, Nizhny Novgorod State University, Gagarin Avenue 23, 603022 Nizhny Novgorod, Russia
| | - Evelina V Permyakova
- Institute of Continuous Media Mechanics, UB RAS, Academician Korolev Street 1, 614013 Perm, Russia
| | - Lyudmila S Klimenko
- Institute of Continuous Media Mechanics, UB RAS, Academician Korolev Street 1, 614013 Perm, Russia
- Department of Theoretical Physics, Perm State University, Bukirev Street 15, 614990 Perm, Russia
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8
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Clusella P, Montbrió E. Exact low-dimensional description for fast neural oscillations with low firing rates. Phys Rev E 2024; 109:014229. [PMID: 38366470 DOI: 10.1103/physreve.109.014229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Accepted: 12/18/2023] [Indexed: 02/18/2024]
Abstract
Recently, low-dimensional models of neuronal activity have been exactly derived for large networks of deterministic, quadratic integrate-and-fire (QIF) neurons. Such firing rate models (FRM) describe the emergence of fast collective oscillations (>30 Hz) via the frequency locking of a subset of neurons to the global oscillation frequency. However, the suitability of such models to describe realistic neuronal states is seriously challenged by the fact that during episodes of fast collective oscillations, neuronal discharges are often very irregular and have low firing rates compared to the global oscillation frequency. Here we extend the theory to derive exact FRM for QIF neurons to include noise and show that networks of stochastic neurons displaying irregular discharges at low firing rates during episodes of fast oscillations are governed by exactly the same evolution equations as deterministic networks. Our results reconcile two traditionally confronted views on neuronal synchronization and upgrade the applicability of exact FRM to describe a broad range of biologically realistic neuronal states.
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Affiliation(s)
- Pau Clusella
- Departament de Matemàtiques, Universitat Politècnica de Catalunya, 08242 Manresa, Spain
| | - Ernest Montbrió
- Neuronal Dynamics Group, Department of Information and Communication Technologies, Universitat Pompeu Fabra, 08018 Barcelona, Spain
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9
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Clusella P, Köksal-Ersöz E, Garcia-Ojalvo J, Ruffini G. Comparison between an exact and a heuristic neural mass model with second-order synapses. BIOLOGICAL CYBERNETICS 2023; 117:5-19. [PMID: 36454267 PMCID: PMC10160168 DOI: 10.1007/s00422-022-00952-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 10/23/2022] [Indexed: 05/05/2023]
Abstract
Neural mass models (NMMs) are designed to reproduce the collective dynamics of neuronal populations. A common framework for NMMs assumes heuristically that the output firing rate of a neural population can be described by a static nonlinear transfer function (NMM1). However, a recent exact mean-field theory for quadratic integrate-and-fire (QIF) neurons challenges this view by showing that the mean firing rate is not a static function of the neuronal state but follows two coupled nonlinear differential equations (NMM2). Here we analyze and compare these two descriptions in the presence of second-order synaptic dynamics. First, we derive the mathematical equivalence between the two models in the infinitely slow synapse limit, i.e., we show that NMM1 is an approximation of NMM2 in this regime. Next, we evaluate the applicability of this limit in the context of realistic physiological parameter values by analyzing the dynamics of models with inhibitory or excitatory synapses. We show that NMM1 fails to reproduce important dynamical features of the exact model, such as the self-sustained oscillations of an inhibitory interneuron QIF network. Furthermore, in the exact model but not in the limit one, stimulation of a pyramidal cell population induces resonant oscillatory activity whose peak frequency and amplitude increase with the self-coupling gain and the external excitatory input. This may play a role in the enhanced response of densely connected networks to weak uniform inputs, such as the electric fields produced by noninvasive brain stimulation.
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Affiliation(s)
- Pau Clusella
- Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, 08003, Barcelona, Spain.
| | - Elif Köksal-Ersöz
- LTSI - UMR 1099, INSERM, Univ Rennes, Campus Beaulieu, 35000, Rennes, France
| | - Jordi Garcia-Ojalvo
- Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, 08003, Barcelona, Spain
| | - Giulio Ruffini
- Brain Modeling Department, Neuroelectrics, Av. Tibidabo, 47b, 08035, Barcelona, Spain.
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10
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Gast R, Solla SA, Kennedy A. Macroscopic dynamics of neural networks with heterogeneous spiking thresholds. Phys Rev E 2023; 107:024306. [PMID: 36932598 DOI: 10.1103/physreve.107.024306] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Accepted: 02/02/2023] [Indexed: 06/18/2023]
Abstract
Mean-field theory links the physiological properties of individual neurons to the emergent dynamics of neural population activity. These models provide an essential tool for studying brain function at different scales; however, for their application to neural populations on large scale, they need to account for differences between distinct neuron types. The Izhikevich single neuron model can account for a broad range of different neuron types and spiking patterns, thus rendering it an optimal candidate for a mean-field theoretic treatment of brain dynamics in heterogeneous networks. Here we derive the mean-field equations for networks of all-to-all coupled Izhikevich neurons with heterogeneous spiking thresholds. Using methods from bifurcation theory, we examine the conditions under which the mean-field theory accurately predicts the dynamics of the Izhikevich neuron network. To this end, we focus on three important features of the Izhikevich model that are subject here to simplifying assumptions: (i) spike-frequency adaptation, (ii) the spike reset conditions, and (iii) the distribution of single-cell spike thresholds across neurons. Our results indicate that, while the mean-field model is not an exact model of the Izhikevich network dynamics, it faithfully captures its different dynamic regimes and phase transitions. We thus present a mean-field model that can represent different neuron types and spiking dynamics. The model comprises biophysical state variables and parameters, incorporates realistic spike resetting conditions, and accounts for heterogeneity in neural spiking thresholds. These features allow for a broad applicability of the model as well as for a direct comparison to experimental data.
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Affiliation(s)
- Richard Gast
- Department of Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA
| | - Sara A Solla
- Department of Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA
| | - Ann Kennedy
- Department of Neuroscience, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA
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11
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Cross-scale excitability in networks of quadratic integrate-and-fire neurons. PLoS Comput Biol 2022; 18:e1010569. [PMID: 36191049 PMCID: PMC9560555 DOI: 10.1371/journal.pcbi.1010569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 10/13/2022] [Accepted: 09/13/2022] [Indexed: 11/05/2022] Open
Abstract
From the action potentials of neurons and cardiac cells to the amplification of calcium signals in oocytes, excitability is a hallmark of many biological signalling processes. In recent years, excitability in single cells has been related to multiple-timescale dynamics through canards, special solutions which determine the effective thresholds of the all-or-none responses. However, the emergence of excitability in large populations remains an open problem. Here, we show that the mechanism of excitability in large networks and mean-field descriptions of coupled quadratic integrate-and-fire (QIF) cells mirrors that of the individual components. We initially exploit the Ott-Antonsen ansatz to derive low-dimensional dynamics for the coupled network and use it to describe the structure of canards via slow periodic forcing. We demonstrate that the thresholds for onset and offset of population firing can be found in the same way as those of the single cell. We combine theoretical analysis and numerical computations to develop a novel and comprehensive framework for excitability in large populations, applicable not only to models amenable to Ott-Antonsen reduction, but also to networks without a closed-form mean-field limit, in particular sparse networks.
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12
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Exact mean-field models for spiking neural networks with adaptation. J Comput Neurosci 2022; 50:445-469. [PMID: 35834100 DOI: 10.1007/s10827-022-00825-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 06/15/2022] [Indexed: 10/17/2022]
Abstract
Networks of spiking neurons with adaption have been shown to be able to reproduce a wide range of neural activities, including the emergent population bursting and spike synchrony that underpin brain disorders and normal function. Exact mean-field models derived from spiking neural networks are extremely valuable, as such models can be used to determine how individual neurons and the network they reside within interact to produce macroscopic network behaviours. In the paper, we derive and analyze a set of exact mean-field equations for the neural network with spike frequency adaptation. Specifically, our model is a network of Izhikevich neurons, where each neuron is modeled by a two dimensional system consisting of a quadratic integrate and fire equation plus an equation which implements spike frequency adaptation. Previous work deriving a mean-field model for this type of network, relied on the assumption of sufficiently slow dynamics of the adaptation variable. However, this approximation did not succeed in establishing an exact correspondence between the macroscopic description and the realistic neural network, especially when the adaptation time constant was not large. The challenge lies in how to achieve a closed set of mean-field equations with the inclusion of the mean-field dynamics of the adaptation variable. We address this problem by using a Lorentzian ansatz combined with the moment closure approach to arrive at a mean-field system in the thermodynamic limit. The resulting macroscopic description is capable of qualitatively and quantitatively describing the collective dynamics of the neural network, including transition between states where the individual neurons exhibit asynchronous tonic firing and synchronous bursting. We extend the approach to a network of two populations of neurons and discuss the accuracy and efficacy of our mean-field approximations by examining all assumptions that are imposed during the derivation. Numerical bifurcation analysis of our mean-field models reveals bifurcations not previously observed in the models, including a novel mechanism for emergence of bursting in the network. We anticipate our results will provide a tractable and reliable tool to investigate the underlying mechanism of brain function and dysfunction from the perspective of computational neuroscience.
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Buendía V, Villegas P, Burioni R, Muñoz MA. The broad edge of synchronization: Griffiths effects and collective phenomena in brain networks. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2022; 380:20200424. [PMID: 35599563 DOI: 10.1098/rsta.2020.0424] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Many of the amazing functional capabilities of the brain are collective properties stemming from the interactions of large sets of individual neurons. In particular, the most salient collective phenomena in brain activity are oscillations, which require the synchronous activation of many neurons. Here, we analyse parsimonious dynamical models of neural synchronization running on top of synthetic networks that capture essential aspects of the actual brain anatomical connectivity such as a hierarchical-modular and core-periphery structure. These models reveal the emergence of complex collective states with intermediate and flexible levels of synchronization, halfway in the synchronous-asynchronous spectrum. These states are best described as broad Griffiths-like phases, i.e. an extension of standard critical points that emerge in structurally heterogeneous systems. We analyse different routes (bifurcations) to synchronization and stress the relevance of 'hybrid-type transitions' to generate rich dynamical patterns. Overall, our results illustrate the complex interplay between structure and dynamics, underlining key aspects leading to rich collective states needed to sustain brain functionality. This article is part of the theme issue 'Emergent phenomena in complex physical and socio-technical systems: from cells to societies'.
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Affiliation(s)
- Victor Buendía
- Max Planck Institute for Biological Cybernetics, Tübingen, Germany
- Department of Computer Science, University of Tübingen, Tübingen, Germany
| | - Pablo Villegas
- IMT Institute for Advanced Studies, Piazza San Ponziano 6 55100 Lucca, Italy
| | - Raffaella Burioni
- Dipartimento di Matematica, Fisica e Informatica, Università di Parma, via G.P. Usberti, 7/A - 43124, Parma, Italy
- INFN, Gruppo Collegato di Parma, via G.P. Usberti, 7/A - 43124, Parma, Italy
| | - Miguel A Muñoz
- Departamento de Electromagnetismo y Física de la Materia e Instituto Carlos I de Física Teórica y Computacional. Universidad de Granada, E-18071 Granada, Spain
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14
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Vaughn MJ, Haas JS. On the Diverse Functions of Electrical Synapses. Front Cell Neurosci 2022; 16:910015. [PMID: 35755782 PMCID: PMC9219736 DOI: 10.3389/fncel.2022.910015] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 05/25/2022] [Indexed: 11/13/2022] Open
Abstract
Electrical synapses are the neurophysiological product of gap junctional pores between neurons that allow bidirectional flow of current between neurons. They are expressed throughout the mammalian nervous system, including cortex, hippocampus, thalamus, retina, cerebellum, and inferior olive. Classically, the function of electrical synapses has been associated with synchrony, logically following that continuous conductance provided by gap junctions facilitates the reduction of voltage differences between coupled neurons. Indeed, electrical synapses promote synchrony at many anatomical and frequency ranges across the brain. However, a growing body of literature shows there is greater complexity to the computational function of electrical synapses. The paired membranes that embed electrical synapses act as low-pass filters, and as such, electrical synapses can preferentially transfer spike after hyperpolarizations, effectively providing spike-dependent inhibition. Other functions include driving asynchronous firing, improving signal to noise ratio, aiding in discrimination of dissimilar inputs, or dampening signals by shunting current. The diverse ways by which electrical synapses contribute to neuronal integration merits furthers study. Here we review how functions of electrical synapses vary across circuits and brain regions and depend critically on the context of the neurons and brain circuits involved. Computational modeling of electrical synapses embedded in multi-cellular models and experiments utilizing optical control and measurement of cellular activity will be essential in determining the specific roles performed by electrical synapses in varying contexts.
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Affiliation(s)
- Mitchell J Vaughn
- Department of Biological Sciences, Lehigh University, Bethlehem, PA, United States
| | - Julie S Haas
- Department of Biological Sciences, Lehigh University, Bethlehem, PA, United States
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15
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Pyragas V, Pyragas K. Mean-field equations for neural populations with q-Gaussian heterogeneities. Phys Rev E 2022; 105:044402. [PMID: 35590671 DOI: 10.1103/physreve.105.044402] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 03/29/2022] [Indexed: 06/15/2023]
Abstract
Describing the collective dynamics of large neural populations using low-dimensional models for averaged variables has long been an attractive task in theoretical neuroscience. Recently developed reduction methods make it possible to derive such models directly from the microscopic dynamics of individual neurons. To simplify the reduction, the Cauchy distribution is usually assumed for heterogeneous network parameters. Here we extend the reduction method for a wider class of heterogeneities defined by the q-Gaussian distribution. The shape of this distribution depends on the Tsallis index q and gradually changes from the Cauchy distribution to the normal Gaussian distribution as this index changes. We derive the mean-field equations for an inhibitory network of quadratic integrate-and-fire neurons with a q-Gaussian-distributed excitability parameter. It is shown that the dynamic modes of the network significantly depend on the form of the distribution determined by the Tsallis index. The results obtained from the mean-field equations are confirmed by numerical simulation of the microscopic model.
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Affiliation(s)
- Viktoras Pyragas
- Center for Physical Sciences and Technology, 10257 Vilnius, Lithuania
| | - Kestutis Pyragas
- Center for Physical Sciences and Technology, 10257 Vilnius, Lithuania
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16
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Clusella P, Pietras B, Montbrió E. Kuramoto model for populations of quadratic integrate-and-fire neurons with chemical and electrical coupling. CHAOS (WOODBURY, N.Y.) 2022; 32:013105. [PMID: 35105122 DOI: 10.1063/5.0075285] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Accepted: 12/13/2021] [Indexed: 06/14/2023]
Abstract
We derive the Kuramoto model (KM) corresponding to a population of weakly coupled, nearly identical quadratic integrate-and-fire (QIF) neurons with both electrical and chemical coupling. The ratio of chemical to electrical coupling determines the phase lag of the characteristic sine coupling function of the KM and critically determines the synchronization properties of the network. We apply our results to uncover the presence of chimera states in two coupled populations of identical QIF neurons. We find that the presence of both electrical and chemical coupling is a necessary condition for chimera states to exist. Finally, we numerically demonstrate that chimera states gradually disappear as coupling strengths cease to be weak.
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Affiliation(s)
- Pau Clusella
- Department of Experimental and Health Sciences, Universitat Pompeu Fabra, Barcelona Biomedical Research Park, 08003 Barcelona, Spain
| | - Bastian Pietras
- Institute of Mathematics, Technical University Berlin, 10623 Berlin, Germany
| | - Ernest Montbrió
- Neuronal Dynamics Group, Department of Information and Communication Technologies, Universitat Pompeu Fabra, 08018 Barcelona, Spain
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17
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Gerster M, Taher H, Škoch A, Hlinka J, Guye M, Bartolomei F, Jirsa V, Zakharova A, Olmi S. Patient-Specific Network Connectivity Combined With a Next Generation Neural Mass Model to Test Clinical Hypothesis of Seizure Propagation. Front Syst Neurosci 2021; 15:675272. [PMID: 34539355 PMCID: PMC8440880 DOI: 10.3389/fnsys.2021.675272] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Accepted: 07/07/2021] [Indexed: 11/13/2022] Open
Abstract
Dynamics underlying epileptic seizures span multiple scales in space and time, therefore, understanding seizure mechanisms requires identifying the relations between seizure components within and across these scales, together with the analysis of their dynamical repertoire. In this view, mathematical models have been developed, ranging from single neuron to neural population. In this study, we consider a neural mass model able to exactly reproduce the dynamics of heterogeneous spiking neural networks. We combine mathematical modeling with structural information from non invasive brain imaging, thus building large-scale brain network models to explore emergent dynamics and test the clinical hypothesis. We provide a comprehensive study on the effect of external drives on neuronal networks exhibiting multistability, in order to investigate the role played by the neuroanatomical connectivity matrices in shaping the emergent dynamics. In particular, we systematically investigate the conditions under which the network displays a transition from a low activity regime to a high activity state, which we identify with a seizure-like event. This approach allows us to study the biophysical parameters and variables leading to multiple recruitment events at the network level. We further exploit topological network measures in order to explain the differences and the analogies among the subjects and their brain regions, in showing recruitment events at different parameter values. We demonstrate, along with the example of diffusion-weighted magnetic resonance imaging (dMRI) connectomes of 20 healthy subjects and 15 epileptic patients, that individual variations in structural connectivity, when linked with mathematical dynamic models, have the capacity to explain changes in spatiotemporal organization of brain dynamics, as observed in network-based brain disorders. In particular, for epileptic patients, by means of the integration of the clinical hypotheses on the epileptogenic zone (EZ), i.e., the local network where highly synchronous seizures originate, we have identified the sequence of recruitment events and discussed their links with the topological properties of the specific connectomes. The predictions made on the basis of the implemented set of exact mean-field equations turn out to be in line with the clinical pre-surgical evaluation on recruited secondary networks.
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Affiliation(s)
- Moritz Gerster
- Institut für Theoretische Physik, Technische Universität Berlin, Berlin, Germany
| | - Halgurd Taher
- Inria Sophia Antipolis Méditerranée Research Centre, MathNeuro Team, Valbonne, France
| | - Antonín Škoch
- National Institute of Mental Health, Klecany, Czechia
- MR Unit, Department of Diagnostic and Interventional Radiology, Institute for Clinical and Experimental Medicine, Prague, Czechia
| | - Jaroslav Hlinka
- National Institute of Mental Health, Klecany, Czechia
- Institute of Computer Science of the Czech Academy of Sciences, Prague, Czechia
| | - Maxime Guye
- Faculté de Médecine de la Timone, Centre de Résonance Magnétique et Biologique et Médicale (CRMBM, UMR CNRS-AMU 7339), Medical School of Marseille, Aix-Marseille Université, Marseille, France
- Assistance Publique -Hôpitaux de Marseille, Hôpital de la Timone, Pôle d'Imagerie, Marseille, France
| | - Fabrice Bartolomei
- Assistance Publique - Hôpitaux de Marseille, Hôpital de la Timone, Service de Neurophysiologie Clinique, Marseille, France
| | - Viktor Jirsa
- Aix Marseille Université, Inserm, Institut de Neurosciences des Systèmes, UMRS 1106, Marseille, France
| | - Anna Zakharova
- Institut für Theoretische Physik, Technische Universität Berlin, Berlin, Germany
| | - Simona Olmi
- Inria Sophia Antipolis Méditerranée Research Centre, MathNeuro Team, Valbonne, France
- Consiglio Nazionale delle Ricerche, Istituto dei Sistemi Complessi, Sesto Fiorentino, Italy
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18
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Pyragas K, Fedaravičius AP, Pyragienė T. Suppression of synchronous spiking in two interacting populations of excitatory and inhibitory quadratic integrate-and-fire neurons. Phys Rev E 2021; 104:014203. [PMID: 34412351 DOI: 10.1103/physreve.104.014203] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 06/14/2021] [Indexed: 01/28/2023]
Abstract
Collective oscillations and their suppression by external stimulation are analyzed in a large-scale neural network consisting of two interacting populations of excitatory and inhibitory quadratic integrate-and-fire neurons. In the limit of an infinite number of neurons, the microscopic model of this network can be reduced to an exact low-dimensional system of mean-field equations. Bifurcation analysis of these equations reveals three different dynamic modes in a free network: a stable resting state, a stable limit cycle, and bistability with a coexisting resting state and a limit cycle. We show that in the limit cycle mode, high-frequency stimulation of an inhibitory population can stabilize an unstable resting state and effectively suppress collective oscillations. We also show that in the bistable mode, the dynamics of the network can be switched from a stable limit cycle to a stable resting state by applying an inhibitory pulse to the excitatory population. The results obtained from the mean-field equations are confirmed by numerical simulation of the microscopic model.
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Affiliation(s)
- Kestutis Pyragas
- Department of Fundamental Research, Center for Physical Sciences and Technology, LT-10257 Vilnius, Lithuania
| | - Augustinas P Fedaravičius
- Department of Fundamental Research, Center for Physical Sciences and Technology, LT-10257 Vilnius, Lithuania
| | - Tatjana Pyragienė
- Department of Fundamental Research, Center for Physical Sciences and Technology, LT-10257 Vilnius, Lithuania
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19
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Goldobin DS, di Volo M, Torcini A. Reduction Methodology for Fluctuation Driven Population Dynamics. PHYSICAL REVIEW LETTERS 2021; 127:038301. [PMID: 34328756 DOI: 10.1103/physrevlett.127.038301] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Revised: 03/24/2021] [Accepted: 06/14/2021] [Indexed: 06/13/2023]
Abstract
Lorentzian distributions have been largely employed in statistical mechanics to obtain exact results for heterogeneous systems. Analytic continuation of these results is impossible even for slightly deformed Lorentzian distributions due to the divergence of all the moments (cumulants). We have solved this problem by introducing a "pseudocumulants" expansion. This allows us to develop a reduction methodology for heterogeneous spiking neural networks subject to extrinsic and endogenous fluctuations, thus obtaining a unified mean-field formulation encompassing quenched and dynamical sources of disorder.
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Affiliation(s)
- Denis S Goldobin
- Institute of Continuous Media Mechanics, Ural Branch of RAS, Acad. Korolev Street 1, 614013 Perm, Russia
- Department of Theoretical Physics, Perm State University, Bukirev Street 15, 614990 Perm, Russia
| | - Matteo di Volo
- Laboratoire de Physique Théorique et Modélisation, Université de Cergy-Pontoise, CNRS, UMR 8089, 95302 Cergy-Pontoise cedex, France
| | - Alessandro Torcini
- Laboratoire de Physique Théorique et Modélisation, Université de Cergy-Pontoise, CNRS, UMR 8089, 95302 Cergy-Pontoise cedex, France
- CNR-Consiglio Nazionale delle Ricerche-Istituto dei Sistemi Complessi, via Madonna del Piano 10, I-50019 Sesto Fiorentino, Italy
- INFN Sezione di Firenze, Via Sansone 1, I-50019 Sesto Fiorentino, Florence, Italy
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20
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Paradoxical phase response of gamma rhythms facilitates their entrainment in heterogeneous networks. PLoS Comput Biol 2021; 17:e1008575. [PMID: 34191796 PMCID: PMC8277239 DOI: 10.1371/journal.pcbi.1008575] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 07/13/2021] [Accepted: 05/18/2021] [Indexed: 11/20/2022] Open
Abstract
The synchronization of different γ-rhythms arising in different brain areas has been implicated in various cognitive functions. Here, we focus on the effect of the ubiquitous neuronal heterogeneity on the synchronization of ING (interneuronal network gamma) and PING (pyramidal-interneuronal network gamma) rhythms. The synchronization properties of rhythms depends on the response of their collective phase to external input. We therefore determine the macroscopic phase-response curve for finite-amplitude perturbations (fmPRC) of ING- and PING-rhythms in all-to-all coupled networks comprised of linear (IF) or quadratic (QIF) integrate-and-fire neurons. For the QIF networks we complement the direct simulations with the adjoint method to determine the infinitesimal macroscopic PRC (imPRC) within the exact mean-field theory. We show that the intrinsic neuronal heterogeneity can qualitatively modify the fmPRC and the imPRC. Both PRCs can be biphasic and change sign (type II), even though the phase-response curve for the individual neurons is strictly non-negative (type I). Thus, for ING rhythms, say, external inhibition to the inhibitory cells can, in fact, advance the collective oscillation of the network, even though the same inhibition would lead to a delay when applied to uncoupled neurons. This paradoxical advance arises when the external inhibition modifies the internal dynamics of the network by reducing the number of spikes of inhibitory neurons; the advance resulting from this disinhibition outweighs the immediate delay caused by the external inhibition. These results explain how intrinsic heterogeneity allows ING- and PING-rhythms to become synchronized with a periodic forcing or another rhythm for a wider range in the mismatch of their frequencies. Our results identify a potential function of neuronal heterogeneity in the synchronization of coupled γ-rhythms, which may play a role in neural information transfer via communication through coherence. The interaction of a large number of oscillating units can lead to the emergence of a collective, macroscopic oscillation in which many units oscillate in near-unison or near-synchrony. This has been exploited technologically, e.g., to combine many coherently interacting, individual lasers to form a single powerful laser. Collective oscillations are also important in biology. For instance, the circadian rhythm of animals is controlled by the near-synchronous dynamics of a large number of individually oscillating cells. In animals and humans brain rhythms reflect the coherent dynamics of a large number of neurons and are surmised to play an important role in the communication between different brain areas. To be functionally relevant, these rhythms have to respond to external inputs and have to be able to synchronize with each other. We show that the ubiquitous heterogeneity in the properties of the individual neurons in a network can contribute to that ability. It can allow the external inputs to modify the internal network dynamics such that the network can follow these inputs over a wider range of frequencies. Paradoxically, while an external perturbation may delay individual neurons, their ensuing within-network interaction can overcompensate this delay, leading to an overall advance of the rhythm.
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21
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Laing CR. Effects of degree distributions in random networks of type-I neurons. Phys Rev E 2021; 103:052305. [PMID: 34134197 DOI: 10.1103/physreve.103.052305] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Accepted: 04/28/2021] [Indexed: 11/07/2022]
Abstract
We consider large networks of theta neurons and use the Ott-Antonsen ansatz to derive degree-based mean-field equations governing the expected dynamics of the networks. Assuming random connectivity, we investigate the effects of varying the widths of the in- and out-degree distributions on the dynamics of excitatory or inhibitory synaptically coupled networks and gap junction coupled networks. For synaptically coupled networks, the dynamics are independent of the out-degree distribution. Broadening the in-degree distribution destroys oscillations in inhibitory networks and decreases the range of bistability in excitatory networks. For gap junction coupled neurons, broadening the degree distribution varies the values of parameters at which there is an onset of collective oscillations. Many of the results are shown to also occur in networks of more realistic neurons.
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Affiliation(s)
- Carlo R Laing
- School of Natural and Computational Sciences, Massey University, Private Bag 102-904 NSMC, Auckland, New Zealand
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22
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Shen Q, Liu Z. Remote firing propagation in the neural network of C. elegans. Phys Rev E 2021; 103:052414. [PMID: 34134291 DOI: 10.1103/physreve.103.052414] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Accepted: 05/10/2021] [Indexed: 11/07/2022]
Abstract
Understanding the mechanisms of firing propagation in brain networks has been a long-standing problem in the fields of nonlinear dynamics and network science. In general, it is believed that a specific firing in a brain network may be gradually propagated from a source node to its neighbors and then to the neighbors' neighbors and so on. Here, we explore firing propagation in the neural network of Caenorhabditis elegans and surprisingly find an abnormal phenomenon, i.e., remote firing propagation between two distant and indirectly connected nodes with the intermediate nodes being inactivated. This finding is robust to source nodes but depends on the topology of network such as the unidirectional couplings and heterogeneity of network. Further, a brief theoretical analysis is provided to explain its mechanism and a principle for remote firing propagation is figured out. This finding provides insights for us to understand how those cognitive subnetworks emerge in a brain network.
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Affiliation(s)
- Qiwei Shen
- School of Physics and Electronic Science, East China Normal University, Shanghai 200062, People's Republic of China
| | - Zonghua Liu
- School of Physics and Electronic Science, East China Normal University, Shanghai 200062, People's Republic of China
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