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Wang Y, Zhao Y, Chen Z, Jia Z, Tong D, Nie S, Han Z. First-principles investigation of positively charged and neutral oxygen vacancies in amorphous silica. J Chem Phys 2024; 161:034705. [PMID: 39012813 DOI: 10.1063/5.0206938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Accepted: 05/09/2024] [Indexed: 07/18/2024] Open
Abstract
The structural parameters, electron localization functions, electron paramagnetic resonance (EPR) parameters, formation energies, and thermodynamic transition levels of various oxygen vacancy defects in amorphous silica are comprehensively and integrally investigated by using density functional theory. The trends of changes in the oxygen vacancy defect structure and electron localization induced by the increase in distance between defective silicon atoms are clearly identified. It is shown that the dimer configuration may be the potential structure of the Eδ' center. For the back-projected unpuckered configuration and the puckered configuration, whose EPR parameters are more consistent with the experimental values of the Eγ' center, the unpaired electron localized on the sp3 hybridized silicon atom is a common feature. Due to the three-coordinated oxygen atom in the forward-oriented configuration, the EPR parameters are closest to those of the Eα' center. Transformations of oxygen vacancy defects under different charge states are studied by sequentially adding and removing electrons. The thermodynamic transition level analysis reveals that the dimer and forward configurations may behave as deep traps for electron accumulation. The back-projected puckered fourfold-coordinated and fivefold-coordinated configurations are comparatively stable and may be able to function as shallow traps for electron transport. The neutral double unpuckered, neutral back-projected puckered fourfold-coordinated, and neutral back-projected unpuckered configurations are more likely to lose electrons during hole trapping. As the bias voltage is repeatedly changed, the defect density of the puckered configuration may reduce, while that of the dimer and unpuckered configuration may take an opposite trend.
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Affiliation(s)
- Yuqi Wang
- School of Nuclear Science and Technology, Xi'an Jiaotong University, Xi'an 710049, People's Republic of China
| | - Yaolin Zhao
- School of Nuclear Science and Technology, Xi'an Jiaotong University, Xi'an 710049, People's Republic of China
| | - Zhongcun Chen
- China Nuclear Power Technology Research Institute, Shenzhen 518000, People's Republic of China
| | - Ziqi Jia
- School of Nuclear Science and Technology, Xi'an Jiaotong University, Xi'an 710049, People's Republic of China
| | - Dayin Tong
- School of Nuclear Science and Technology, Xi'an Jiaotong University, Xi'an 710049, People's Republic of China
| | - Shaowei Nie
- School of Nuclear Science and Technology, Xi'an Jiaotong University, Xi'an 710049, People's Republic of China
| | - Zitong Han
- School of Nuclear Science and Technology, Xi'an Jiaotong University, Xi'an 710049, People's Republic of China
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2
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Jiang C, Li K, Bi Z, Ma S, Zhang J, Liu B, Li J. Developments in Atomistic and Nano Structure Evolution Mechanisms of Molten Slag Using Atomistic Simulation Methods. NANOMATERIALS (BASEL, SWITZERLAND) 2024; 14:464. [PMID: 38470793 DOI: 10.3390/nano14050464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 02/27/2024] [Accepted: 02/29/2024] [Indexed: 03/14/2024]
Abstract
Molten slag has different properties depending on its composition. The relationship between its composition, structure, and properties has been the focus of attention in industrial manufacturing processes. This review describes the atomistic scale mechanisms by which oxides of different compositions affect the properties and structure of slag, and depicts the current state of research in the atomic simulation of molten slag. At present, the research on the macroscopic properties of molten slag mainly focuses on viscosity, free-running temperature, melting point, and desulphurization capacity. Regulating the composition has become the most direct and effective way to control slag properties. Analysis of the microevolution mechanism is the fundamental way to grasp the macroscopic properties. The microstructural evolution mechanism, especially at the atomic and nanoscale of molten slag, is reviewed from three aspects: basic oxides, acidic oxides, and amphoteric oxides. The evolution of macroscopic properties is analyzed in depth through the evolution of the atomic structure. Resolution of the macroscopic properties of molten slag by the atomic structure plays a crucial role in the development of fundamental theories of physicochemistry.
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Affiliation(s)
- Chunhe Jiang
- Technical Support Center for Prevention and Control of Disastrous Accidents in Metal Smelting, University of Science and Technology Beijing, Beijing 100083, China
| | - Kejiang Li
- School of Metallurgical and Ecological Engineering, University of Science and Technology Beijing, Beijing 100083, China
| | - Zhisheng Bi
- School of Metallurgical and Ecological Engineering, University of Science and Technology Beijing, Beijing 100083, China
| | - Shufang Ma
- Aetna Tianlong Tungsten Molybdenum Technology Co., Ltd., No. 11 Fenghui Middle Road, Haidian District, Beijing 100094, China
| | - Jianliang Zhang
- School of Metallurgical and Ecological Engineering, University of Science and Technology Beijing, Beijing 100083, China
- School of Chemical Engineering, The University of Queensland, Saint Lucia, QLD 4072, Australia
| | - Bo Liu
- School of Advanced Engineering, University of Science and Technology Beijing, Beijing 100083, China
| | - Jiaqi Li
- School of Advanced Engineering, University of Science and Technology Beijing, Beijing 100083, China
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3
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Chae S, Lim HK, Lee S. Energy Landscapes for Lithium Incorporation and Diffusion in Multidomain Silicon Suboxide Anode Materials. ACS APPLIED MATERIALS & INTERFACES 2023. [PMID: 38015616 DOI: 10.1021/acsami.3c12846] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2023]
Abstract
In-depth understanding of the lithium interaction characteristics within multidomain silicon suboxide is indispensable for optimizing the electrochemical performance of silicon suboxide anode materials for lithium-ion batteries. In this study, we investigate the domain-dependent thermodynamic and kinetic properties of lithium atoms within systematically designed multidomain silicon suboxide models composed of Si, SiO2, and Si/SiO2 interface by performing a series of computational simulations combined with a unique tomography-like sampling scheme. We find that the Si/SiO2 interfacial region exhibits preferential thermodynamics and kinetics for lithiation and can serve as a critical lithium transport channel during charge-discharge cycles, while the SiO2 domain is likely to be excluded from lithiation due to its high resistance to lithium diffusion. Consequently, a significant fraction of lithium is expected to be trapped at the Si/SiO2 interface during the discharge process, which ultimately contributes to a low initial Coulombic efficiency. This theoretical understanding suggests that the formation of continuously connected lithium-transportable Si/SiO2 interfacial channels surrounding the Si domains, along with a well-structured shallow SiO2 framework through the use of appropriate synthesis methods, is essential for maximizing the electrochemical performance of silicon suboxide anode materials.
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Affiliation(s)
- Somin Chae
- Department of Chemical Engineering and Materials Science, Ewha Womans University, 52, Ewhayeodae-gil, Seodaemun-gu, Seoul 03760, Republic of Korea
- Graduate Program in System Health Science and Engineering, Ewha Womans University, 52, Ewhayeodae-gil, Seodaemun-gu, Seoul 03760, Republic of Korea
| | - Hyung-Kyu Lim
- Division of Chemical Engineering and Bioengineering, Kangwon National University, Chuncheon, Gangwon-do 24341, Republic of Korea
| | - Sangheon Lee
- Department of Chemical Engineering and Materials Science, Ewha Womans University, 52, Ewhayeodae-gil, Seodaemun-gu, Seoul 03760, Republic of Korea
- Graduate Program in System Health Science and Engineering, Ewha Womans University, 52, Ewhayeodae-gil, Seodaemun-gu, Seoul 03760, Republic of Korea
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4
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Kobayashi K, Okumura M, Nakamura H, Itakura M, Machida M, Urata S, Suzuya K. Machine learning molecular dynamics reveals the structural origin of the first sharp diffraction peak in high-density silica glasses. Sci Rep 2023; 13:18721. [PMID: 37973977 PMCID: PMC10654503 DOI: 10.1038/s41598-023-44732-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Accepted: 10/11/2023] [Indexed: 11/19/2023] Open
Abstract
The first sharp diffraction peak (FSDP) in the total structure factor has long been regarded as a characteristic feature of medium-range order (MRO) in amorphous materials with a polyhedron network, and its underlying structural origin is a subject of ongoing debate. In this study, we utilized machine learning molecular dynamics (MLMD) simulations to explore the origin of FSDP in two typical high-density silica glasses: silica glass under pressure and permanently densified glass. Our MLMD simulations accurately reproduce the structural properties of high-density silica glasses observed in experiments, including changes in the FSDP intensity depending on the compression temperature. By analyzing the simulated silica glass structures, we uncover the structural origin responsible for the changes in the MRO at high density in terms of the periodicity between the ring centers and the shape of the rings. The reduction or enhancement of MRO in the high-density silica glasses can be attributed to how the rings deform under compression.
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Affiliation(s)
- Keita Kobayashi
- CCSE, Japan Atomic Energy Agency, Kashiwa, Chiba, 277-0871, Japan.
| | - Masahiko Okumura
- CCSE, Japan Atomic Energy Agency, Kashiwa, Chiba, 277-0871, Japan
| | - Hiroki Nakamura
- CCSE, Japan Atomic Energy Agency, Kashiwa, Chiba, 277-0871, Japan
| | | | - Masahiko Machida
- CCSE, Japan Atomic Energy Agency, Kashiwa, Chiba, 277-0871, Japan
| | - Shingo Urata
- Innovative Technology Research Center, AGC Inc., 1150 Hazawa-cho, Kanagawa-ku, Yokohama, Kanagawa, 221-8755, Japan
| | - Kentaro Suzuya
- Materials and Life Science Division, J-PARC Center, Japan Atomic Energy Agency, Tokai, Ibaraki, 319-1195, Japan
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5
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Ding A, Han B, Zhang S, Huang Q, Wang J, Wei C, Du Y, Seifert HJ. Ab initio molecular dynamics study on the disordered Li-Ga-Sn system. Phys Chem Chem Phys 2022; 24:10537-10547. [PMID: 35445227 DOI: 10.1039/d2cp00618a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The eutectic Ga91.6Sn8.4 liquid metal could serve as the anode in Li-ion batteries to avoid dendrite growth issue and volume expansion, and maintain a good cycle life. However, the microstructure and the basic physical properties of the lithiated Ga91.6Sn8.4 are ignored in experiments and still unclear. In this work, we assume that a disordered structure is formed in the initial stage of lithiation of Ga91.6Sn8.4, and the structure, equilibrium density, thermal expansion coefficient, mixing enthalpy, self-diffusion coefficient and viscosity of the disordered Li-Ga-Sn system are investigated systematically by ab initio molecular dynamics. The radial distribution function, structure factor and bond angle distribution function are calculated to obtain local structure information. Our calculations show that the lithiation of Ga91.6Sn8.4 is exothermic, and for most cases, the diffusion coefficients for Li, Ga and Sn decrease with increasing Li content. Based on structural information and diffusion coefficients, we reveal that the lithiation of Ga91.6Sn8.4 will make the liquid Ga91.6Sn8.4 alloy form a solid-like structure. With the increase of Li content, it is more likely to form a solid-like structure. Furthermore, our simulations reveal that the chemical interaction of Li-Sn and Li-Ga is stronger than that of Ga-Sn, and Li is prone to combine with Sn firstly in the lithiation process of Ga91.6Sn8.4.
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Affiliation(s)
- An Ding
- State Key Laboratory of Powder Metallurgy, Central South University, 410083, Changsha, China.
| | - Bo Han
- State Key Laboratory of Powder Metallurgy, Central South University, 410083, Changsha, China.
| | - Shiwei Zhang
- State Key Laboratory of Powder Metallurgy, Central South University, 410083, Changsha, China.
| | - Qi Huang
- State Key Laboratory of Powder Metallurgy, Central South University, 410083, Changsha, China.
| | - Jianchuan Wang
- State Key Laboratory of Powder Metallurgy, Central South University, 410083, Changsha, China.
| | - Chengyang Wei
- Guangdong Zhaoqing Insititute of Quality Inspection & metrology, 526070, Zhaoqing, China
| | - Yong Du
- State Key Laboratory of Powder Metallurgy, Central South University, 410083, Changsha, China.
| | - Hans J Seifert
- Institute for Applied Materials (IAM-AWP), Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany
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Holm A, Kupferer A, Mändl S, Lotnyk A, Mayr SG. Conductive Tracks in Carbon Implanted Titania Nanotubes: Atomic‐Scale Insights from Experimentally Based Ab Initio Molecular Dynamics Modeling. ADVANCED THEORY AND SIMULATIONS 2022. [DOI: 10.1002/adts.202200063] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Alexander Holm
- Leibniz Institute of Surface Engineering (IOM) Permoserstr.15 Leipzig 04318 Germany
- Division of Surface Physics Faculty of Physics and Earth Sciences University of Leipzig Linnestr. 5 Leipzig 04103 Germany
| | - Astrid Kupferer
- Leibniz Institute of Surface Engineering (IOM) Permoserstr.15 Leipzig 04318 Germany
- Division of Surface Physics Faculty of Physics and Earth Sciences University of Leipzig Linnestr. 5 Leipzig 04103 Germany
| | - Stephan Mändl
- Leibniz Institute of Surface Engineering (IOM) Permoserstr.15 Leipzig 04318 Germany
| | - Andriy Lotnyk
- Leibniz Institute of Surface Engineering (IOM) Permoserstr.15 Leipzig 04318 Germany
| | - Stefan G. Mayr
- Leibniz Institute of Surface Engineering (IOM) Permoserstr.15 Leipzig 04318 Germany
- Division of Surface Physics Faculty of Physics and Earth Sciences University of Leipzig Linnestr. 5 Leipzig 04103 Germany
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Zosiamliana R, Chettri B, Fabris GSL, Sambrano JR, Abdullaev S, Abdurakhmanov G, Rai DP. Electronic, mechanical and piezoelectric properties of glass-like complex Na 2Si 1−xGe xO 3 ( x = 0.0, 0.25, 0.50, 0.75, 1.0). RSC Adv 2022; 12:27666-27678. [PMID: 36276010 PMCID: PMC9516562 DOI: 10.1039/d2ra04671g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Accepted: 08/27/2022] [Indexed: 11/21/2022] Open
Abstract
Motivated by our previous work on pristine Na2SiO3, we proceeded with calculations on the structural, electronic, mechanical and piezoelectric properties of complex glass-like Na2Si1−xGexO3 (x = 0.0, 0.25, 0.50, 0.75, 1.0) by using density functional theory (DFT). Interestingly, the optimized bond lengths and bond angles of Na2SiO3 and Na2GeO3 resemble each other with high similarity. On doping we report the negative formation energy and feasibility of transition of Na2SiO3 → Na2GeO3 while the structural symmetry is preserved. Analyzing the electronic profile, we have observed a reduced band gap on increasing x = Ge concentration at Si-sites. All the systems are indirect band gap (Z–Γ) semiconductors. The studied systems have shown mechanical stabilities by satisfying the Born criteria for mechanical stability. The calculated results have shown highly anisotropic behaviour and high melting temperature, which are a signature of glass materials. The piezoelectric tensor (both direct and converse) is computed. The results thus obtained predict that the systems under investigation are potential piezoelectric materials for energy harvesting. Motivated by our previous work on pristine Na2SiO3, we proceeded with calculations on the structural, electronic, mechanical and piezoelectric properties of complex glass-like Na2Si1−xGexO3 (x = 0.0, 0.25, 0.50, 0.75, 1.0) by using density functional theory (DFT).![]()
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Affiliation(s)
- R. Zosiamliana
- Department of Physics, Physical Sciences Research Center (PSRC), Pachhunga University College, Mizoram University, Aizawl-796001, India
- Department of Physics, Mizoram University, Aizawl-796004, India
| | - B. Chettri
- Department of Physics, Physical Sciences Research Center (PSRC), Pachhunga University College, Mizoram University, Aizawl-796001, India
- Department of Physics, North-Eastern Hill University, Shillong-793022, Meghalaya, India
| | - G. S. L. Fabris
- Postgraduate Program in Materials Science and Engineering, Federal University of Rio Grande do Norte, 59078-970 Natal, RN, Brazil
| | - J. R. Sambrano
- Modeling and Molecular Simulation Group, Sao Paulo State University Julio de Mesquita Filho, Bauru, SP, Brazil
| | - Sherzod Abdullaev
- Andijan Machine-Building Institute, Andijan, Uzbekistan
- "Editory" LLC, Tashkent, Uzbekistan
| | - G. Abdurakhmanov
- National University of Uzbekistan, 4 Universitet str., 100174 Tashkent, Uzbekistan
| | - D. P. Rai
- Department of Physics, Physical Sciences Research Center (PSRC), Pachhunga University College, Mizoram University, Aizawl-796001, India
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8
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Lo Piccolo GM, Cannas M, Agnello S. Intrinsic Point Defects in Silica for Fiber Optics Applications. MATERIALS (BASEL, SWITZERLAND) 2021; 14:7682. [PMID: 34947277 PMCID: PMC8703837 DOI: 10.3390/ma14247682] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/24/2021] [Revised: 12/03/2021] [Accepted: 12/08/2021] [Indexed: 01/22/2023]
Abstract
Due to its unique properties, amorphous silicon dioxide (a-SiO2) or silica is a key material in many technological fields, such as high-power laser systems, telecommunications, and fiber optics. In recent years, major efforts have been made in the development of highly transparent glasses, able to resist ionizing and non-ionizing radiation. However the widespread application of many silica-based technologies, particularly silica optical fibers, is still limited by the radiation-induced formation of point defects, which decrease their durability and transmission efficiency. Although this aspect has been widely investigated, the optical properties of certain defects and the correlation between their formation dynamics and the structure of the pristine glass remains an open issue. For this reason, it is of paramount importance to gain a deeper understanding of the structure-reactivity relationship in a-SiO2 for the prediction of the optical properties of a glass based on its manufacturing parameters, and the realization of more efficient devices. To this end, we here report on the state of the most important intrinsic point defects in pure silica, with a particular emphasis on their main spectroscopic features, their atomic structure, and the effects of their presence on the transmission properties of optical fibers.
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Affiliation(s)
- Giuseppe Mattia Lo Piccolo
- Dipartimento di Fisica e Chimica, Università Degli Studi di Palermo, Via Archirafi 36, 90123 Palermo, Italy;
- Dipartimento di Fisica e Astronomia, Università Degli Studi di Catania, Via Santa Sofia 64, 95123 Catania, Italy
| | - Marco Cannas
- Dipartimento di Fisica e Chimica, Università Degli Studi di Palermo, Via Archirafi 36, 90123 Palermo, Italy;
| | - Simonpietro Agnello
- Dipartimento di Fisica e Chimica, Università Degli Studi di Palermo, Via Archirafi 36, 90123 Palermo, Italy;
- ATeN Center, Università Degli Studi di Palermo, Viale delle Scienze Ed. 18, 90128 Palermo, Italy
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9
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Feng Q, Deng H, Huang S, Li B, Xiang X, Li L, Wang B, Zheng W, Yuan X, Li S, Yang H, Zu X. Strong UV laser absorption source near 355 nm in fused silica and its origination. OPTICS EXPRESS 2021; 29:31849-31858. [PMID: 34615268 DOI: 10.1364/oe.438128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2021] [Accepted: 09/09/2021] [Indexed: 06/13/2023]
Abstract
As a high-performance optical material, fused silica is widely applied in high-power laser and photoelectric systems. However, laser induced damage (LID) of fused silica severely limits the output power and performance of these systems. Due to the values in strong field physics and improving the load capacity and performance of high power systems at UV laser, LID at 355 nm of fused silica has attracted much attention. It has been found that, even be treated by advanced processing technologies, the actual damage threshold of fused silica at 355 nm is far below the intrinsic threshold. It means that there is an absorption source near 355 nm in fused silica. However, to date, the absorption source is still unknown. In this paper, a absorption source near 355 nm is found by first-principles calculations. We find that the absorption source near 355 nm is neutral oxygen-vacancy defect (NOV, ≡Si-Si≡) and this defect originates from the oxygen deficiency of fused silica. Our results indicate that NOV defect can be taken as a damage precursor for 355 nm UV laser, and this precursor can be obviously reduced by increasing the ratio of oxygen to silicon. Present work is valuable for exploring damage mechanisms and methods to improve the damage threshold of fused silica at UV laser.
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Kobayashi K, Nagai Y, Itakura M, Shiga M. Self-learning hybrid Monte Carlo method for isothermal-isobaric ensemble: Application to liquid silica. J Chem Phys 2021; 155:034106. [PMID: 34293890 DOI: 10.1063/5.0055341] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Self-learning hybrid Monte Carlo (SLHMC) is a first-principles simulation that allows for exact ensemble generation on potential energy surfaces based on density functional theory. The statistical sampling can be accelerated with the assistance of smart trial moves by machine learning potentials. In the first report [Nagai et al., Phys. Rev. B 102, 041124(R) (2020)], the SLHMC approach was introduced for the simplest case of canonical sampling. We herein extend this idea to isothermal-isobaric ensembles to enable general applications for soft materials and liquids with large volume fluctuation. As a demonstration, the isothermal-isobaric SLHMC method was used to study the vibrational structure of liquid silica at temperatures close to the melting point, whereby the slow diffusive motion is beyond the time scale of first-principles molecular dynamics. It was found that the static structure factor thus computed from first-principles agrees quite well with the high-energy x-ray data.
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Affiliation(s)
- Keita Kobayashi
- CCSE, Japan Atomic Energy Agency, 178-4-4, Wakashiba, Kashiwa, Chiba 277-0871, Japan
| | - Yuki Nagai
- CCSE, Japan Atomic Energy Agency, 178-4-4, Wakashiba, Kashiwa, Chiba 277-0871, Japan
| | - Mitsuhiro Itakura
- CCSE, Japan Atomic Energy Agency, 178-4-4, Wakashiba, Kashiwa, Chiba 277-0871, Japan
| | - Motoyuki Shiga
- CCSE, Japan Atomic Energy Agency, 178-4-4, Wakashiba, Kashiwa, Chiba 277-0871, Japan
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11
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Bouhadja M, Jakse N. Structural and dynamic properties of aluminosilicate melts: a molecular dynamics study. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2020; 32:104002. [PMID: 31746780 DOI: 10.1088/1361-648x/ab58ea] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
In the present work, the structural and dynamic properties of aluminosilicates (Al2O3) x -(SiO2)1-x (AS) as a function of the Al2O3 concentration x are studied by means of molecular dynamics simulations. Firstly, the parametrization of the Born-Mayer-Huggins type potential developed recently for the more general CaO-Al2O3-SiO2 ternary system is assessed. Comparison of local structural properties, such as the x-ray structure factor, partial pair-correlation functions, distributions of coordination numbers and bond angles, as well as the dynamics through the viscosity and self-diffusion coefficients to experimental data and other molecular dynamics simulations found in the literature, shows that this potential is transferable to AS melts for all compositions and is more reliable than other empirical potentials used so far. The evolution of viscosity with temperature in stable liquid and undercooled regions is studied in the whole composition range and results show a progressive increase of the fragility with increasing Al2O3 content correlated to that of local structural entities like the triply bonded oxygen (TBO), AlO5 and AlO6.
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Affiliation(s)
- Mohammed Bouhadja
- Institut des Molécules et Matériaux du Mans (Facultédes sciences) Université Nantes-Angers-Le Mans, 72085 Le Mans Cedex 09, France
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Horike S, Nagarkar SS, Ogawa T, Kitagawa S. Eine neue Dimension von Koordinationspolymeren und Metall‐organischen Gerüsten: hin zu funktionellen Gläsern und Flüssigkeiten. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201911384] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Satoshi Horike
- Institute for Integrated Cell-Material Sciences Institute for Advanced Study Kyoto University, Yoshida-Honmachi, Sakyo-ku Kyoto 606-8501 Japan
- AIST-Kyoto University Chemical Energy Materials Open Innovation Laboratory (ChEM-OIL) National Institute of Advanced Industrial Science and Technology (AIST), Yoshida-Honmachi, Sakyo-ku Kyoto 606-8501 Japan
- Department of Synthetic Chemistry and Biological Chemistry Graduate School of Engineering Kyoto University, Katsura, Nishikyo-ku Kyoto 615-8510 Japan
- Department of Materials Science and Engineering School of Molecular Science and Engineering Vidyasirimedhi Institute of Science and Technology Rayong 21210 Thailand
| | - Sanjog S. Nagarkar
- AIST-Kyoto University Chemical Energy Materials Open Innovation Laboratory (ChEM-OIL) National Institute of Advanced Industrial Science and Technology (AIST), Yoshida-Honmachi, Sakyo-ku Kyoto 606-8501 Japan
| | - Tomohiro Ogawa
- Institute for Integrated Cell-Material Sciences Institute for Advanced Study Kyoto University, Yoshida-Honmachi, Sakyo-ku Kyoto 606-8501 Japan
| | - Susumu Kitagawa
- Institute for Integrated Cell-Material Sciences Institute for Advanced Study Kyoto University, Yoshida-Honmachi, Sakyo-ku Kyoto 606-8501 Japan
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13
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Horike S, Nagarkar SS, Ogawa T, Kitagawa S. A New Dimension for Coordination Polymers and Metal–Organic Frameworks: Towards Functional Glasses and Liquids. Angew Chem Int Ed Engl 2020; 59:6652-6664. [DOI: 10.1002/anie.201911384] [Citation(s) in RCA: 91] [Impact Index Per Article: 22.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Indexed: 12/11/2022]
Affiliation(s)
- Satoshi Horike
- Institute for Integrated Cell-Material Sciences Institute for Advanced Study Kyoto University, Yoshida-Honmachi, Sakyo-ku Kyoto 606-8501 Japan
- AIST-Kyoto University Chemical Energy Materials Open Innovation Laboratory (ChEM-OIL) National Institute of Advanced Industrial Science and Technology (AIST), Yoshida-Honmachi, Sakyo-ku Kyoto 606-8501 Japan
- Department of Synthetic Chemistry and Biological Chemistry Graduate School of Engineering Kyoto University, Katsura, Nishikyo-ku Kyoto 615-8510 Japan
- Department of Materials Science and Engineering School of Molecular Science and Engineering Vidyasirimedhi Institute of Science and Technology Rayong 21210 Thailand
| | - Sanjog S. Nagarkar
- AIST-Kyoto University Chemical Energy Materials Open Innovation Laboratory (ChEM-OIL) National Institute of Advanced Industrial Science and Technology (AIST), Yoshida-Honmachi, Sakyo-ku Kyoto 606-8501 Japan
| | - Tomohiro Ogawa
- Institute for Integrated Cell-Material Sciences Institute for Advanced Study Kyoto University, Yoshida-Honmachi, Sakyo-ku Kyoto 606-8501 Japan
| | - Susumu Kitagawa
- Institute for Integrated Cell-Material Sciences Institute for Advanced Study Kyoto University, Yoshida-Honmachi, Sakyo-ku Kyoto 606-8501 Japan
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14
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Peng Z, Jia B, Zhang J, Yan B, Wang Y, Yang B, Lu P. Hydrogen-/fluorine-passivation effects in amorphous silica fiber. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.09.027] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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15
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Li W, Ando Y. Comparison of different machine learning models for the prediction of forces in copper and silicon dioxide. Phys Chem Chem Phys 2018; 20:30006-30020. [DOI: 10.1039/c8cp04508a] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Recently, the machine learning (ML) force field has emerged as a powerful atomic simulation approach because of its high accuracy and low computational cost.
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Affiliation(s)
- Wenwen Li
- Research Center for Computational Design of Advanced Functional Materials
- National Institute of Advanced Industrial Science and Technology
- Tsukuba
- Japan
| | - Yasunobu Ando
- Research Center for Computational Design of Advanced Functional Materials
- National Institute of Advanced Industrial Science and Technology
- Tsukuba
- Japan
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16
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Munde MS, Gao DZ, Shluger AL. Diffusion and aggregation of oxygen vacancies in amorphous silica. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2017; 29:245701. [PMID: 28504974 DOI: 10.1088/1361-648x/aa6f9a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Using density functional theory (DFT) calculations, we investigated oxygen vacancy diffusion and aggregation in relation to dielectric breakdown in amorphous silicon dioxide (a-SiO2). Our calculations indicate the existence of favourable sites for the formation of vacancy dimers and trimers in the amorphous network with maximum binding energies of approximately 0.13 eV and 0.18 eV, respectively. However, an average energy barrier height for neutral vacancy diffusion is found to be about 4.6 eV, rendering this process unfeasible. At Fermi level positions above 6.4 eV with respect to the top of the valence band, oxygen vacancies can trap up to two extra electrons. Average barriers for the diffusion of negative and double negatively charged vacancies are found to be 2.7 eV and 2.0 eV, respectively. These barriers are higher than or comparable to thermal ionization energies of extra electrons from oxygen vacancies into the conduction band of a-SiO2. In addition, we discuss the competing pathways for electron trapping in oxygen deficient a-SiO2 caused by the existence of intrinsic electron traps and oxygen vacancies. These results provide new insights into the role of oxygen vacancies in degradation and dielectric breakdown in amorphous silicon oxides.
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Affiliation(s)
- Manveer S Munde
- Department of Physics and Astronomy, University College London Gower Street, London WC1E 6BT, United Kingdom
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17
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Konstantinou K, Sushko PV, Duffy DM. Modelling the local atomic structure of molybdenum in nuclear waste glasses with ab initio molecular dynamics simulations. Phys Chem Chem Phys 2016; 18:26125-26132. [PMID: 27711386 DOI: 10.1039/c6cp03076a] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The nature of chemical bonding of molybdenum in high level nuclear waste glasses has been elucidated by ab initio molecular dynamics simulations. Two compositions, (SiO2)57.5-(B2O3)10-(Na2O)15-(CaO)15-(MoO3)2.5 and (SiO2)57.3-(B2O3)20-(Na2O)6.8-(Li2O)13.4-(MoO3)2.5, were considered in order to investigate the effect of ionic and covalent components on the glass structure and the formation of the crystallisation precursors (Na2MoO4 and CaMoO4). The coordination environments of Mo cations and the corresponding bond lengths calculated from our model are in excellent agreement with experimental observations. The analysis of the first coordination shell reveals two different types of molybdenum host matrix bonds in the lithium sodium borosilicate glass. Based on the structural data and the bond valence model, we demonstrate that the Mo cation can be found in a redox state and the molybdate tetrahedron can be connected with the borosilicate network in a way that inhibits the formation of crystalline molybdates. These results significantly extend our understanding of bonding in Mo-containing nuclear waste glasses and demonstrate that tailoring the glass composition to specific heavy metal constituents can facilitate incorporation of heavy metals at high concentrations.
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Affiliation(s)
| | - Peter V Sushko
- Physical Sciences Division, Physical & Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Dorothy M Duffy
- Department of Physics and Astronomy, University College London, Gower Street, London, WC1E 6BT, UK.
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18
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Malyi OI, Boström M, Kulish VV, Thiyam P, Parsons DF, Persson C. Volume dependence of the dielectric properties of amorphous SiO2. Phys Chem Chem Phys 2016; 18:7483-9. [DOI: 10.1039/c5cp06775h] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The dielectric properties of amorphous SiO2 and other SiO2 polymorphs are linked by simple volume dependence.
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Affiliation(s)
- Oleksandr I. Malyi
- Centre for Materials Science and Nanotechnology
- University of Oslo
- NO-0316 Oslo
- Norway
| | - Mathias Boström
- Centre for Materials Science and Nanotechnology
- University of Oslo
- NO-0316 Oslo
- Norway
| | - Vadym V. Kulish
- Department of Mechanical Engineering
- National University of Singapore
- Singapore 117576
- Singapore
| | - Priyadarshini Thiyam
- Department of Materials Science and Engineering
- Royal Institute of Technology
- SE-100 44 Stockholm
- Sweden
| | - Drew F. Parsons
- School of Engineering and Information Technology
- Murdoch University
- Murdoch
- Australia
| | - Clas Persson
- Centre for Materials Science and Nanotechnology
- University of Oslo
- NO-0316 Oslo
- Norway
- Department of Materials Science and Engineering
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19
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Odinokov A, Freidzon A, Bagaturyants A. Molecular dynamics simulation of the glass transition in 4,4′-N,N′-dicarbazolylbiphenyl. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.05.013] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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20
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Christie JK, Ainsworth RI, de Leeuw NH. Ab initio molecular dynamics simulations of structural changes associated with the incorporation of fluorine in bioactive phosphate glasses. Biomaterials 2014; 35:6164-71. [DOI: 10.1016/j.biomaterials.2014.04.032] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2014] [Accepted: 04/10/2014] [Indexed: 11/16/2022]
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21
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Viani L, Risko C, Toney MF, Breiby DW, Brédas JL. Substrate-induced variations of molecular packing, dynamics, and intermolecular electronic couplings in pentacene monolayers on the amorphous silica dielectric. ACS NANO 2014; 8:690-700. [PMID: 24369713 DOI: 10.1021/nn405399n] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Charge-carrier transport in thin-film organic field-effect transistors takes place within the first (few) molecular layer(s) of the active organic material in contact with the gate dielectric. Here, we use atomistic molecular dynamics simulations to evaluate how interactions with bare amorphous silica surfaces that vary in terms of surface potential influence the molecular packing and dynamics of a monolayer pentacene film. The results indicate that the long axis of the pentacene molecules has a non-negligible tilt angle away from the surface normal. Grazing-incidence X-ray diffraction patterns for these models are calculated, and we discuss notable differences in the shapes of the Bragg rods as a function of the molecular packing, also in relation to previously published experimental reports. Intermolecular electronic couplings (transfer integrals) evaluated for the monolayers show marked differences compared to bulk crystal calculations, a result that points to the importance of fully considering the molecular packing environment in charge-carrier mobility models for organic electronic materials.
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Affiliation(s)
- Lucas Viani
- School of Chemistry and Biochemistry and Center for Organic Photonics and Electronics, Georgia Institute of Technology , Atlanta, Georgia 30332-0400, United States
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22
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Rimola A, Costa D, Sodupe M, Lambert JF, Ugliengo P. Silica surface features and their role in the adsorption of biomolecules: computational modeling and experiments. Chem Rev 2013; 113:4216-313. [PMID: 23289428 DOI: 10.1021/cr3003054] [Citation(s) in RCA: 328] [Impact Index Per Article: 29.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Albert Rimola
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra (Cerdanyola del Vallès), Spain
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23
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Nishio K, Miyazaki T, Nakamura H. Universal medium-range order of amorphous metal oxides. PHYSICAL REVIEW LETTERS 2013; 111:155502. [PMID: 24160612 DOI: 10.1103/physrevlett.111.155502] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2012] [Revised: 06/19/2013] [Indexed: 06/02/2023]
Abstract
We propose that the structure of amorphous metal oxides can be regarded as a dual-dense-random-packing structure, which is a superposition of the dense random packing of metal atoms and that of oxygen atoms. Our ab initio molecular dynamics simulations show that the medium-range order of amorphous HfO2, ZrO2, TiO2, In2O3, Ga2O3, Al2O3, and Cu2O is characterized by the pentagonal-bipyramid arrangement of metal atoms and that of oxygen atoms, and prove the validity of our dual-random-sphere-packing model. In other words, we find that the pentagonal medium-range order is universal independent of type of metal oxide.
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Affiliation(s)
- Kengo Nishio
- Nanosystem Research Institute (NRI), "RICS," National Institute of Advanced Industrial Science and Technology (AIST), Central 2, Umezono 1-1-1, Tsukuba, Ibaraki 305-8568, Japan
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24
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Fujii K, Kodama H, Iyi N, Fujita T, Kitamura K, Sato H, Yamagishi A, Hayashi S. Reversibly meltable layered alkylsiloxanes with melting points controllable by alkyl chain lengths. NEW J CHEM 2013. [DOI: 10.1039/c3nj41008k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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25
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Abstract
This paper summarizes the scientific trends associated with the rapid development of the technique of high-energy X-ray diffraction over the past decade pertaining to the field of liquids, glasses, and amorphous materials. The measurement of high-quality X-ray structure factors out to large momentum transfers leads to high-resolution pair distribution functions which can be directly compared to theory or combined with data from other experimental techniques. The advantages of combining highly penetrating radiation with low angle scattering are outlined together with the data analysis procedure and formalism. Also included are advances in high-energy synchrotron beamline instrumentation, sample environment equipment, and an overview of the role of simulation and modeling for interpreting data from disordered materials. Several examples of recent trends in glass and liquid research are described. Finally, directions for future research are considered within the context of past and current developments in the field.
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Affiliation(s)
- C. J. Benmore
- Department of Physics, Arizona State University, Tempe, AZ 85287-1604, USA
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26
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Christie JK, Tilocca A. Molecular Dynamics Simulations and Structural Descriptors of Radioisotope Glass Vectors for In Situ Radiotherapy. J Phys Chem B 2012; 116:12614-20. [DOI: 10.1021/jp304200f] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Jamieson K. Christie
- Department of Chemistry and Thomas
Young Centre, University College London, 20 Gordon Street, London
WC1H 0AJ, U.K
| | - Antonio Tilocca
- Department of Chemistry and Thomas
Young Centre, University College London, 20 Gordon Street, London
WC1H 0AJ, U.K
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27
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Pedone A, Charpentier T, Menziani MC. The structure of fluoride-containing bioactive glasses: new insights from first-principles calculations and solid state NMR spectroscopy. ACTA ACUST UNITED AC 2012. [DOI: 10.1039/c2jm30890h] [Citation(s) in RCA: 81] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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28
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Li T, Gygi F, Galli G. Tailored nanoheterojunctions for optimized light emission. PHYSICAL REVIEW LETTERS 2011; 107:206805. [PMID: 22181758 DOI: 10.1103/physrevlett.107.206805] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2011] [Indexed: 05/31/2023]
Abstract
We present coupled classical and quantum simulations of 1 to 2 nm Si nanocrystals (NCs) embedded in amorphous SiO(2) and we show that by tuning the density of the oxide matrix one may change the relative alignment of Si NC and SiO(2) electronic states at the interface. We find that interfacial strain plays a key role in determining the variation of the nanaoparticle gap as a function of size, as well as of conduction band offsets with the oxide. In particular, our results show that it is the variation of the valence band offset with size that is responsible for the gap change. Our findings suggest that the elastic properties of the embedding matrix may be tuned to tailor the energy levels of small Si NCs so as to optimize their performance in optoelectronic devices and solar cells.
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Affiliation(s)
- Tianshu Li
- Department of Civil and Environmental Engineering, George Washington University, Washington, DC 20052, USA.
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29
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Christie JK, Pedone A, Menziani MC, Tilocca A. Fluorine Environment in Bioactive Glasses: ab Initio Molecular Dynamics Simulations. J Phys Chem B 2011; 115:2038-45. [DOI: 10.1021/jp110788h] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Jamieson K. Christie
- Department of Chemistry and Thomas Young Centre, University College London, London WC1H 0AJ, U.K
| | | | | | - Antonio Tilocca
- Department of Chemistry and Thomas Young Centre, University College London, London WC1H 0AJ, U.K
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30
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Abstract
AbstractA semi-empirical methodology [1,2] developed to model and simulate covalently bonded networked systems is modified to study the heteroatomic mixtures of silica. This methodology is capable of grasping the essential qualitative and quantitative features of the coupling between the electronic coordinates and the geometric structure. The methodology is used to simulate and to probe the structural and thermodynamic properties of the bulk crystalline, amorphous solid and the melt states of silica.
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31
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Karki BB, Stixrude L. First-principles study of enhancement of transport properties of silica melt by water. PHYSICAL REVIEW LETTERS 2010; 104:215901. [PMID: 20867116 DOI: 10.1103/physrevlett.104.215901] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2010] [Indexed: 05/29/2023]
Abstract
First-principles molecular dynamics simulations show that water (8.25 wt%) dramatically affects the transport properties of SiO2 liquid increasing the diffusivity and decreasing the viscosity by an order of magnitude. At 3000 K, the diffusivity of Si, O, and H, and the viscosity vary anomalously with pressure. Highly mobile protons make the hydrous liquid a potential superionic conductor. The predicted dynamical changes are associated with structural depolymerization and water speciation, which changes from being dominated by hydroxyls at low pressure to extended structures at high pressure.
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Affiliation(s)
- Bijaya B Karki
- Department of Computer Science, Louisiana State University, Baton Rouge, Louisiana 70803, USA
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32
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Tilocca A. Models of structure, dynamics and reactivity of bioglasses: a review. ACTA ACUST UNITED AC 2010. [DOI: 10.1039/c0jm01081b] [Citation(s) in RCA: 84] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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33
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Massobrio C. Nanostructural Units in Disordered Network-Forming Materials and the Origin of Intermediate Range Order. ADVANCES IN THE ATOMIC-SCALE MODELING OF NANOSYSTEMS AND NANOSTRUCTURED MATERIALS 2010. [DOI: 10.1007/978-3-642-04650-6_10] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
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34
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Scandolo S, Giannozzi P, Cavazzoni C, de Gironcoli S, Pasquarello A, Baroni S. First-principles codes for computational crystallography in the Quantum-ESPRESSO package. ACTA ACUST UNITED AC 2009. [DOI: 10.1524/zkri.220.5.574.65062] [Citation(s) in RCA: 126] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
The Quantum-ESPRESSO package is a multi-purpose and multi-platform software for ab-initio calculations of condensed matter (periodic and disordered) systems. Codes in the package are based on density functional theory and on a plane wave/pseudopotential description of the electronic ground state and are ideally suited for structural optimizations (both at zero and at finite temperature), linear response calculations (phonons, elastic constants, dielectric and Raman tensors, etc.) and high-temperature molecular dynamics. Examples of applications of the codes included in the package are briefly discussed.
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35
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GUISSANI YVES, GUILLOT BERTRAND. Transport of rare gases and molecular water in fused silica by molecular dynamics simulation. Mol Phys 2009. [DOI: 10.1080/00268979809483146] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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36
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Tilocca A. Structural models of bioactive glasses from molecular dynamics simulations. Proc Math Phys Eng Sci 2009. [DOI: 10.1098/rspa.2008.0462] [Citation(s) in RCA: 113] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The bioactive mechanism, by which living tissues attach to and integrate with an artificial implant through stable chemical bonds, is at the core of many current medical applications of biomaterials, as well as of novel promising applications in tissue engineering. Having been employed in these applications for almost 40 years, soda-lime phosphosilicate glasses such as 45S5 represent today the paradigm of bioactive materials. Despite their strategical importance in the field, the relationship between the structure and the activity of a glass composition in a biological environment has not been studied in detail. This fundamental gap negatively affects further progress, for instance, to improve the chemical durability and tailor the biodegradability of these materials for specific applications. This paper reviews recent advances in computer modelling of bioactive glasses based on molecular dynamics simulations, which are starting to unveil key structural features of these materials, thus contributing to improve our fundamental understanding of how bioactive materials work.
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Affiliation(s)
- Antonio Tilocca
- Department of Chemistry and Materials Simulation Laboratory, University College LondonLondon WC1H 0AJ, UK
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37
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Anderson KE, Hirschmann MM, Siepmann JI. Structure and speciation in hydrous silica melts. 1. Temperature and composition effects. J Phys Chem B 2008; 112:13005-14. [PMID: 18811182 DOI: 10.1021/jp802253d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Monte Carlo simulations were used to investigate the phase behavior of hydrated liquid silica as a function of temperature and overall water mole fraction, x w. Simulations using the Feuston-Garofalini potential were performed in the isobaric-isothermal ensemble at p = 1 GPa for 15 temperatures (2000 < or = T < or = 9000 K) and 25 compositions (0.0 < or = x w < or = 0.4). The unusual volume minimum exhibited by tetrahedrally coordinated liquid silica is found to persist up to x w approximately 0.267, although the temperature of the volume minimum decreases with increasing water content. Structural properties of the pure and hydrated systems are compared and the addition of water to liquid silica disrupts the silica network more dramatically than temperature alone. The simulations yield very low concentrations of molecular water, e.g. only about 1.2% of the oxygen atoms are bound to exactly two hydrogen atoms at x w = 0.4 and T = 3000 K.
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Affiliation(s)
- Kelly E Anderson
- Departments of Chemistry and of Chemical Engineering and Materials Science, University of Minnesota, 207 Pleasant Street SE, Minneapolis, MN 55455-0431, USA
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38
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Anderson KE, Grauvilardell LC, Hirschmann MM, Siepmann JI. Structure and Speciation in Hydrous Silica Melts. 2. Pressure Effects. J Phys Chem B 2008; 112:13015-21. [DOI: 10.1021/jp802255y] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Kelly E. Anderson
- Departments of Chemistry and of Chemical Engineering and Materials Science, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, and Department of Geology and Geophysics, University of Minnesota, 310 Pillsbury Drive SE, Minneapolis, Minnesota 55455-0219
| | - Lorna C. Grauvilardell
- Departments of Chemistry and of Chemical Engineering and Materials Science, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, and Department of Geology and Geophysics, University of Minnesota, 310 Pillsbury Drive SE, Minneapolis, Minnesota 55455-0219
| | - Marc M. Hirschmann
- Departments of Chemistry and of Chemical Engineering and Materials Science, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, and Department of Geology and Geophysics, University of Minnesota, 310 Pillsbury Drive SE, Minneapolis, Minnesota 55455-0219
| | - J. Ilja Siepmann
- Departments of Chemistry and of Chemical Engineering and Materials Science, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455-0431, and Department of Geology and Geophysics, University of Minnesota, 310 Pillsbury Drive SE, Minneapolis, Minnesota 55455-0219
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39
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Alkauskas A, Broqvist P, Devynck F, Pasquarello A. Band offsets at semiconductor-oxide interfaces from hybrid density-functional calculations. PHYSICAL REVIEW LETTERS 2008; 101:106802. [PMID: 18851241 DOI: 10.1103/physrevlett.101.106802] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2008] [Indexed: 05/20/2023]
Abstract
Band offsets at semiconductor-oxide interfaces are determined through a scheme based on hybrid density functionals, which incorporate a fraction alpha of Hartree-Fock exchange. For each bulk component, the fraction alpha is tuned to reproduce the experimental band gap, and the conduction and valence band edges are then located with respect to a reference level. The lineup of the bulk reference levels is determined through an interface calculation, and shown to be almost independent of the fraction alpha. Application of this scheme to the Si-SiO2, SiC-SiO2, and Si-HfO2 interfaces yields excellent agreement with experiment.
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Affiliation(s)
- Audrius Alkauskas
- Ecole Polytechnique Fédérale de Lausanne (EPFL), Institute of Theoretical Physics, CH-1015 Lausanne, Switzerland
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40
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Direct Observation of Valence and Conduction States near the SiO2/Si(100) Interface. E-JOURNAL OF SURFACE SCIENCE AND NANOTECHNOLOGY 2008. [DOI: 10.1380/ejssnt.2008.209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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41
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Massobrio C, Pasquarello A. Structural properties of amorphous GeSe 2. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2007; 19:415111. [PMID: 28192323 DOI: 10.1088/0953-8984/19/41/415111] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
By using first-principles molecular dynamics within density functional theory, we study the structural properties of amorphous GeSe2 at T = 300 K. The amorphous configurations have been obtained via cooling from the liquid state followed by extensive relaxation (22 ps) at T = 300 K. The agreement with neutron diffraction experiments is very satisfactory, in particular for the pair correlation functions in real space and the partial structure factors in reciprocal space describing the Ge-Se and the Se-Se correlations. Some residual differences between theory and experiment are found for Ge-Ge correlations. The network organizes itself through the predominant presence of GeSe4 tetrahedra. However, other coordinations exist in non-negligible proportions for both Ge and Se. Homopolar bonds are found for Se, and, in a very limited extent, also for Ge. The number of edge-sharing connections reproduces the experimental data.
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Affiliation(s)
- Carlo Massobrio
- Institut de Physique et de Chimie des Matériaux de Strasbourg, 23 rue du Loess, BP43, F-67034 Strasbourg Cedex 2, France
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42
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Hassanali AA, Singer SJ. Model for the Water−Amorphous Silica Interface: The Undissociated Surface. J Phys Chem B 2007; 111:11181-93. [PMID: 17803296 DOI: 10.1021/jp062971s] [Citation(s) in RCA: 115] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The physical and chemical properties of the amorphous silica-water interface are of crucial importance for a fundamental understanding of electrochemical and electrokinetic phenomena, and for various applications including chromatography, sensors, metal ion extraction, and the construction of micro- and nanoscale devices. A model for the undissociated amorphous silica-water interface reported here is a step toward a practical microscopic model of this important system. We have extended the popular BKS and SPC/E models for bulk silica and water to describe the hydrated, hydroxylated amorphous silica surface. The parameters of our model were determined using ab initio quantum chemical studies on small fragments. Our model will be useful in empirical potential studies, and as a starting point for ab initio molecular dynamics calculations. At this stage, we present a model for the undissociated surface. Our calculated value for the heat of immersion, 0.3 J x m(-2), falls within the range of reported experimental values of 0.2-0.8 J x m(-2). We also study the perturbation of water properties near the silica-water interface. The disordered surface is characterized by regions that are hydrophilic and hydrophobic, depending on the statistical variations in silanol group density.
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Affiliation(s)
- Ali A Hassanali
- Biophysics Program and Department of Chemistry, Ohio State University, Columbus, Ohio 43210, USA
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43
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Zhang Y, Li ZH, Truhlar DG. Computational Requirements for Simulating the Structures and Proton Activity of Silicaceous Materials. J Chem Theory Comput 2007; 3:593-604. [DOI: 10.1021/ct6002884] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yuan Zhang
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431
| | - Zhen Hua Li
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431
| | - Donald G. Truhlar
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431
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Mei Q, Benmore CJ, Weber JKR. Structure of liquid SiO2: a measurement by high-energy x-ray diffraction. PHYSICAL REVIEW LETTERS 2007; 98:057802. [PMID: 17358901 DOI: 10.1103/physrevlett.98.057802] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2006] [Indexed: 05/08/2023]
Abstract
The x-ray structure factor for liquid SiO2 has been measured by laser heating of an aerodynamically levitated droplet. The main structural changes of the melt compared to the room temperature glass are associated with an increase in the size of the SiO4 tetrahedra, indicating a small reduction in the average Si-O-Si bond torsion angle and an expansion of the network between 5 and 9 A. Strong directional bonds with little high temperature broadening and a high degree of intermediate range order are found to persist in the liquid state.
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Affiliation(s)
- Q Mei
- Intense Pulsed Neutron Source Division, Argonne National Laboratory, Argonne, Illinois 60439, USA
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45
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Tilocca A, de Leeuw NH. Ab Initio Molecular Dynamics Study of 45S5 Bioactive Silicate Glass. J Phys Chem B 2006; 110:25810-6. [PMID: 17181225 DOI: 10.1021/jp065146k] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Bioglass 45S5, the prototype of bioactive melt-quenched silicate glasses, was modeled by means of Car-Parrinello molecular dynamics (CPMD) simulations. Although long-range structural properties cannot be modeled by using this ab initio approach, the accuracy of CPMD simulations is exploited here to provide insight into the short-range structure and to analyze vibrational and electronic properties of this biomaterial. Detailed structural analysis in the short-range scale provided insight into the local environment of modifier Na and Ca ions: a possible key role of these cations in organizing the glass network by connecting different chains and fragments into specific, rather flexible geometries was proposed. The individual contributions of different species to the vibrational density of states were separated and discussed, allowing the identification of specific features in the vibrational spectrum, such as those related to phosphate groups. The components of the electronic density of states were also analyzed, enabling us to identify correlations between the electronic structure and the structural properties, such as the different bonding character of Si-O bonds involving bridging or nonbridging oxygen atoms.
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Affiliation(s)
- Antonio Tilocca
- Department of Chemistry, University College London, London, United Kingdom.
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46
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Godet J, Pasquarello A. Proton diffusion mechanism in amorphous SiO2. PHYSICAL REVIEW LETTERS 2006; 97:155901. [PMID: 17155340 DOI: 10.1103/physrevlett.97.155901] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2006] [Indexed: 05/12/2023]
Abstract
We study proton diffusion in amorphous SiO2 from the atomic scale to the long-range percolative regime. Ab initio molecular dynamics suggest that the dominant atomic process consists in cross-ring interoxygen hopping assisted by network vibrations. A statistical analysis accounting for the disorder in amorphous SiO2 yields relations between transition energies and interoxygen distances for both cross-ring and nearest-neighbor hopping. The percolative regime is then addressed through large-size model systems reproducing these relations. Cross-ring hopping is confirmed as the dominant diffusion mechanism and supported by a good agreement with experiment for the activation energy.
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Affiliation(s)
- Julien Godet
- Ecole Polytechnique Fédérale de Lausanne, Institute of Theoretical Physics, CH-1015 Lausanne, Switzerland
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47
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Giustino F, Pasquarello A. Mixed Wannier-Bloch functions for electrons and phonons in periodic systems. PHYSICAL REVIEW LETTERS 2006; 96:216403. [PMID: 16803259 DOI: 10.1103/physrevlett.96.216403] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2006] [Indexed: 05/10/2023]
Abstract
We introduce mixed Wannier-Bloch functions for studying electronic and vibrational spectra of periodic systems. These functions carry both spatial localization and limited spectral broadening, thereby combining the advantages of descriptions based on energy eigenstates (Bloch states) and position eigenstates (Wannier states). For the analysis of vibrational modes, a lattice position operator is introduced, analogous to the electronic Berry-phase position operator. Application to vitreous SiO2 demonstrates that mixed Wannier-Bloch functions constitute a powerful tool for tracking fingerprints of short- and medium-range structural order in electronic and vibrational spectra.
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Affiliation(s)
- Feliciano Giustino
- Ecole Polytechnique Fédérale de Lausanne (EPFL), Institute of Theoretical Physics, CH-1015 Lausanne, Switzerland
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48
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Micoulaut M, Guissani Y, Guillot B. Simulated structural and thermal properties of glassy and liquid germania. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 73:031504. [PMID: 16605529 DOI: 10.1103/physreve.73.031504] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2005] [Revised: 01/10/2006] [Indexed: 05/08/2023]
Abstract
Structural, dynamical, and thermal properties of germanium dioxide are investigated with classical molecular dynamics simulations from the amorphous to the liquid state. Pair correlation functions and coordination numbers are computed under pressure change and show the progressive conversion of the tetrahedral network into an octahedral network, in agreement with experiments. The thermodynamical behavior of the liquid is investigated by means of an equation of state that allows a precise estimation of the compressibility. At low temperature, the diffusion constant D shows an Arrhenius law that progressively deviates when the temperature is increased. The overall comparison with simulated silica permits finally to outline not only the differences in the physical behavior of these two similar systems but also to stress the limitation of the employed germania potential.
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Affiliation(s)
- M Micoulaut
- Laboratoire de Physique Théorique de la Matière Condensée, CNRS UMR 7600, Université Pierre et Marie Curie, Boite 121, 4, Place Jussieu, 75252 Paris Cedex 05, France
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49
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Direct observation of the site-specific valence electronic structure at SiO2/Si(111) interface. E-JOURNAL OF SURFACE SCIENCE AND NANOTECHNOLOGY 2006. [DOI: 10.1380/ejssnt.2006.280] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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50
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Tilocca A, de Leeuw NH. Structural and electronic properties of modified sodium and soda-lime silicate glasses by Car–Parrinello molecular dynamics. ACTA ACUST UNITED AC 2006. [DOI: 10.1039/b517362k] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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