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Atioğlu Z, Akkurt M, Mammadova GZ, Mlowe S. Crystal structure and Hirshfeld surface analysis of (3a SR,6 RS,6a SR,7 RS,11b SR,11c RS)-2,2-dibenzyl-2,3,6a,11c-tetra-hydro-1 H,6 H,7 H-3a,6:7,11b-di-epoxy-dibenzo[ de, h]isoquinolin-2-ium tri-fluoro-methane-sulfonate. Acta Crystallogr E Crystallogr Commun 2021; 77:1072-1077. [PMID: 34868638 PMCID: PMC8587987 DOI: 10.1107/s2056989021010173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 10/01/2021] [Indexed: 06/13/2023]
Abstract
In the cation of the title salt, C30H28NO2 +·CF3O3S-, the four tetra-hydro-furan rings adopt envelope conformations. In the crystal, pairs of cations are linked by dimeric C-H⋯O hydrogen bonds, forming two R 2 2(6) ring motifs parallel to the (001) plane. The cations and anions are connected by further C-H⋯O hydrogen bonds, forming a three-dimensional network structure. Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H⋯H (47.6%), C⋯H/H⋯C (20.6%), O⋯H/H⋯O (18.0%) and F⋯H/H⋯F (9.9%) inter-actions.
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Affiliation(s)
- Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Turkey
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Gunay Z. Mammadova
- Department of Chemistry, Baku State University, Z. Khalilov str. 23, AZ, 1148 Baku, Azerbaijan
| | - Sixberth Mlowe
- University of Dar es Salaam, Dar es Salaam University College of Education, Department of Chemistry, PO Box 2329, Dar es Salaam, Tanzania
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Atioğlu Z, Akkurt M, Mammadova GZ, Bhattarai A. Crystal structure and Hirshfeld surface analysis of 2,2,2-tri-chloro- N, N-bis-{[(1 RS,4 SR)-1,4-di-hydro-1,4-ep-oxy-naphthalen-1-yl]meth-yl}acetamide. Acta Crystallogr E Crystallogr Commun 2021; 77:1048-1053. [PMID: 34667636 PMCID: PMC8491519 DOI: 10.1107/s2056989021009907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Accepted: 09/22/2021] [Indexed: 11/13/2022]
Abstract
In the title compound, C24H18Cl3NO3, the tetra-hydro-furan rings adopt envelope conformations. In the crystal, C-H⋯O hydrogen bonds connect mol-ecules, generating layers parallel to the (001) plane. These layers are connected along the c-axis direction by C-H⋯π inter-actions. The packing is further stabilized by inter-layer van der Waals and inter-halogen inter-actions. The most important contributions to the surface contacts are from H⋯H (36.8%), Cl⋯H/H⋯Cl (26.6%), C⋯H/H⋯C (18.8%) and O⋯H/H⋯O (11.3%) inter-actions, as concluded from a Hirshfeld surface analysis.
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Affiliation(s)
- Zeliha Atioğlu
- Department of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Turkey
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, AZ 1148 Baku, Azerbaijan
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
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Mertsalov DF, Alekseeva KA, Daria MS, Cheshigin ME, Çelikesir ST, Akkurt M, Grigoriev MS, Mlowe S. (3a S,4 R,5 R,6 S,7a R)-4,5-Di-bromo-2-[4-(tri-fluoro-meth-yl)phen-yl]-2,3,3a,4,5,6,7,7a-octa-hydro-3a,6-ep-oxy-1 H-isoindol-1-one: crystal structure and Hirshfeld surface analysis. Acta Crystallogr E Crystallogr Commun 2021; 77:466-472. [PMID: 34026248 PMCID: PMC8100269 DOI: 10.1107/s2056989021003200] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 03/26/2021] [Indexed: 11/10/2022]
Abstract
The asymmetric unit of the title compound, C15H12Br2F3NO2, consists of two crystallographically independent mol-ecules. In both mol-ecules, the pyrrolidine and tetra-hydro-furan rings adopt an envelope conformation. In the crystal, mol-ecule pairs generate centrosymmetric rings with R 2 2(8) motifs linked by C-H⋯O hydrogen bonds. These pairs of mol-ecules form a tetra-meric supra-molecular motif, leading to mol-ecular layers parallel to the (100) plane by C-H⋯π and C-Br⋯π inter-actions. Inter-layer van der Waals and inter-halogen inter-actions stabilize mol-ecular packing. The F atoms of the CF3 groups of both mol-ecules are disordered over two sets of sites with refined site occupancies of 0.60 (3)/0.40 (3) and 0.640 (15)/0.360 (15). The most important contributions to the surface contacts of both mol-ecules are from H⋯H (23.8 and 22.4%), Br⋯H/H⋯Br (18.3 and 12.3%), O⋯H/H⋯O (14.3 and 9.7%) and F⋯H/H⋯F (10.4 and 19.1%) inter-actions, as concluded from a Hirshfeld surface analysis.
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Affiliation(s)
- Dmitriy F. Mertsalov
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | - Kseniia A. Alekseeva
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | - Magrycheva S. Daria
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | - Maxim E. Cheshigin
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | | | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Mikhail S. Grigoriev
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninskiy prospect 31-4, Moscow 119071, Russian Federation
| | - Sixberth Mlowe
- University of Dar es Salaam, Dar es Salaam University College of Education, Department of Chemistry, PO Box 2329, Dar es Salaam, Tanzania
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Mertsalov DF, Nadirova MA, Sorokina EA, Vinokurova MA, Çelikesir ST, Akkurt M, Kolesnik IA, Bhattarai A. Crystal structure and Hirshfeld surface analysis of ( RS)-3-hy-droxy-2-{[(3a RS,6 RS,7a RS)-2-(4-methyl-phenyl-sulfon-yl)-2,3,3a,6,7,7a-hexa-hydro-3a,6-ep-oxy-1 H-isoindol-6-yl]meth-yl}isoindolin-1-one. Acta Crystallogr E Crystallogr Commun 2021; 77:260-265. [PMID: 33953948 PMCID: PMC8061098 DOI: 10.1107/s2056989021001626] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Accepted: 02/10/2021] [Indexed: 11/11/2022]
Abstract
The title compound, C24H24N2O5S, crystallizes with two independent mol-ecules (A and B) in the asymmetric unit. In the central ring systems of both mol-ecules, the tetra-hydro-furan rings adopt envelope conformations, the pyrrolidine rings adopt a twisted-envelope conformation and the six-membered ring is in a boat conformation. In mol-ecules A and B, the nine-membered groups attached to the central ring system are essentially planar (r.m.s. deviations of 0.002 and 0.003 Å, respectively). They form dihedral angles of 64.97 (9) and 56.06 (10)°, respectively, with the phenyl rings. In the crystal, strong inter-molecular O-H⋯O hydrogen bonds and weak inter-molecular C-H⋯O contacts link the mol-ecules, forming a three-dimensional network. In addition weak π-π stacking inter-actions [centroid-to centroid distance = 3.7124 (13) Å] between the pyrrolidine rings of the nine-membered groups of A mol-ecules are observed. Hirshfeld surface analysis and two-dimensional fingerprint plots were used to qu-antify the inter-molecular inter-actions present in the crystal, indicating that the environments of the two mol-ecules are very similar. The most important contributions for the crystal packing are from H⋯H (55.8% for mol-ecule A and 53.5% for mol-ecule B), O⋯H/H⋯O (24.5% for mol-ecule A and 26.3% for mol-ecule B) and C⋯H/H⋯C (12.6% for mol-ecule A and 15.7% for mol-ecule B) inter-actions.
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Affiliation(s)
- Dmitriy F. Mertsalov
- Department of Organic Chemistry, Peoples’ Friendship University of Russia, (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | - Maryana A. Nadirova
- Department of Organic Chemistry, Peoples’ Friendship University of Russia, (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | - Elena A. Sorokina
- Department of Organic Chemistry, Peoples’ Friendship University of Russia, (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | - Marina A. Vinokurova
- Department of Organic Chemistry, Peoples’ Friendship University of Russia, (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | | | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Irina A. Kolesnik
- Laboratory of Organoelement Compounds, Institute of Physical Organic Chemistry, National Academy of Sciences of Belarus, 13 Surganov St., 220072, Minsk, Belarus
| | - Ajaya Bhattarai
- Department of Chemistry, M.M.A.M.C (Tribhuvan University), Biratnagar, Nepal
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Mertsalov DF, Zaytsev VP, Pokazeev KM, Grigoriev MS, Bachinsky AV, Çelikesir ST, Akkurt M, Mlowe S. Crystal structure and Hirshfeld surface analysis of 2-benzyl-4,5-di-bromo-2,3,3a,4,5,6,7,7a-octa-hydro-3a,6-ep-oxy-1 H-isoindol-1-one. Acta Crystallogr E Crystallogr Commun 2021; 77:255-259. [PMID: 33953947 PMCID: PMC8061114 DOI: 10.1107/s2056989021001481] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Accepted: 02/08/2021] [Indexed: 11/10/2022]
Abstract
The title compound, C15H15Br2NO2, crystallizes with two mol-ecules in the asymmetric unit of the unit cell. In both mol-ecules, the tetra-hydro-furan rings adopt an envelope conformation with the O atom as the flap and the pyrrolidine rings adopt an envelope conformation. In the crystal, mol-ecules are linked by weak C-H⋯O hydrogen bonds, forming sheets lying parallel to the (002) plane. These sheets are connected only by weak van der Waals inter-actions. The most important contributions to the surface contacts are from H⋯H (44.6%), Br⋯H/H⋯Br (24.1%), O⋯H/H⋯O (13.5%) and C⋯H/H⋯C (11.2%) inter-actions, as concluded from a Hirshfeld surface analysis.
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Affiliation(s)
- Dmitriy F. Mertsalov
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | - Vladimir P. Zaytsev
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | - Kuzma M. Pokazeev
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | - Mikhail S. Grigoriev
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninsky pr. 31, bld. 4, Moscow, 119071, Russian Federation
| | - Alexander V. Bachinsky
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | | | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Sixberth Mlowe
- University of Dar es Salaam, Dar es Salaam University College of Education, Department of Chemistry, PO Box 2329, Dar es Salaam, Tanzania
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Mertsalov DF, Nadirova MA, Chervyakova LV, Grigoriev MS, Shelukho ER, Çelikesir ST, Akkurt M, Mlowe S. Crystal structure and Hirshfeld surface analysis of 4,5-di-bromo-6-methyl-2-phenyl-2,3,3a,4,5,6,7,7a-octa-hydro-3a,6-ep-oxy-1 H-isoindol-1-one. Acta Crystallogr E Crystallogr Commun 2021; 77:237-241. [PMID: 33953943 PMCID: PMC8061099 DOI: 10.1107/s205698902100116x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 02/01/2021] [Indexed: 12/04/2022]
Abstract
In the title compound, C15H15Br2NO2, two bridged tetra-hydro-furan rings adopt envelope conformations with the O atom as the flap. The pyrrolidine ring also adopts an envelope conformation with the spiro C atom as the flap. In the crystal, the mol-ecules are linked into dimers by pairs of C-H⋯O hydrogen bonds, thus generating R 2 2(18) rings. The crystal packing is dominated by H⋯H, Br⋯H, H⋯π and Br⋯π inter-actions. One of the Br atoms is disordered over two sites with occupation ratio of 0.833 (8):0.167 (8).
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Affiliation(s)
- Dmitriy F. Mertsalov
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | - Maryana A. Nadirova
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | - Lala V. Chervyakova
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | - Mikhail S. Grigoriev
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninsky pr. 31, bld. 4, Moscow, 119071, Russian Federation
| | - Evgeniya R. Shelukho
- Department of Organic Chemistry, Peoples’ Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., 117198, Moscow, Russian Federation
| | | | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Sixberth Mlowe
- University of Dar es Salaam, Dar es Salaam University College of Education, Department of Chemistry, PO Box 2329, Dar es Salaam, Tanzania
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Temel E, Demircan A, Kandemir MK, Colak M, Büyükgüngör O. (3aR,6S,7aR)-7a-Chloro-2-[(4-nitro-phen-yl)sulfon-yl]-1,2,3,6,7,7a-hexa-hydro-3a,6-ep-oxy-iso-indole. Acta Crystallogr Sect E Struct Rep Online 2013; 69:o1551-2. [PMID: 24098235 PMCID: PMC3790416 DOI: 10.1107/s1600536813025336] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2013] [Accepted: 09/12/2013] [Indexed: 11/11/2022]
Abstract
In the title compound, C14H13ClN2O5S, the chlorine-substituted tetrahydrofuran ring adopts a twist conformation and the other tetrahydrofuran ring an envelope conformation with the O atom as the flap. The pyrrolidine ring adopts a twist conformation. In the crystal, C—H⋯O hydrogen bonds link the molecules into zigzag chains running along the b-axis direction.
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Affiliation(s)
- Ersin Temel
- Ondokuz Mayıs University, Arts and Sciences Faculty, Department of Physics, TR-55139 Samsun, Turkey
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