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Montero de Hijes P, Dellago C, Jinnouchi R, Kresse G. Density isobar of water and melting temperature of ice: Assessing common density functionals. J Chem Phys 2024; 161:131102. [PMID: 39360681 DOI: 10.1063/5.0227514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Accepted: 09/06/2024] [Indexed: 10/04/2024] Open
Abstract
We investigate the density isobar of water and the melting temperature of ice using six different density functionals. Machine-learning potentials are employed to ensure computational affordability. Our findings reveal significant discrepancies between various base functionals. Notably, even the choice of damping can result in substantial differences. Overall, the outcomes obtained through density functional theory are not entirely satisfactory across most utilized functionals. All functionals exhibit significant deviations either in the melting temperature or equilibrium volume, with most of them even predicting an incorrect volume difference between ice and water. Our heuristic analysis indicates that a hybrid functional with 25% exact exchange and van der Waals damping averaged between zero and Becke-Johnson dampings yields the closest agreement with experimental data. This study underscores the necessity for further enhancements in the treatment of van der Waals interactions and, more broadly, density functional theory to enable accurate quantitative predictions for molecular liquids.
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Affiliation(s)
- Pablo Montero de Hijes
- University of Vienna, Faculty of Physics, Kolingasse 14, A-1090 Vienna, Austria
- University of Vienna, Faculty of Earth Sciences, Geography and Astronomy, Josef-Holaubuek-Platz 2, 1090 Vienna, Austria
| | - Christoph Dellago
- University of Vienna, Faculty of Physics, Kolingasse 14, A-1090 Vienna, Austria
| | - Ryosuke Jinnouchi
- Toyota Central R&D Labs., Inc., 41-1 Yokomichi, Nagakute, Aichi 480-1192, Japan
| | - Georg Kresse
- University of Vienna, Faculty of Physics, Kolingasse 14, A-1090 Vienna, Austria
- VASP Software GmbH, Berggasse 21, A-1090 Vienna, Austria
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2
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Abdelhady AW, Mittan-Moreau DW, Crane PL, McLeod MJ, Cheong SH, Thorne RE. Ice formation and its elimination in cryopreservation of oocytes. Sci Rep 2024; 14:18809. [PMID: 39138273 PMCID: PMC11322307 DOI: 10.1038/s41598-024-69528-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Accepted: 08/06/2024] [Indexed: 08/15/2024] Open
Abstract
Damage from ice and potential toxicity of ice-inhibiting cryoprotective agents (CPAs) are key issues in assisted reproduction of humans, domestic and research animals, and endangered species using cryopreserved oocytes and embryos. The nature of ice formed in bovine oocytes (similar in size to oocytes of humans and most other mammals) after rapid cooling and during rapid warming was examined using synchrotron-based time-resolved x-ray diffraction. Using cooling rates, warming rates and CPA concentrations of current practice, oocytes show no ice after cooling but always develop large ice fractions-consistent with crystallization of most free water-during warming, so most ice-related damage must occur during warming. The detailed behavior of ice at warming depended on the nature of ice formed during cooling. Increasing cooling rates allows oocytes soaked as in current practice to remain essentially ice free during both cooling and warming. Much larger convective warming rates are demonstrated and will allow routine ice-free cryopreservation with smaller CPA concentrations. These results clarify the roles of cooling, warming, and CPA concentration in generating ice in oocytes and establish the structure and grain size of ice formed. Ice formation can be eliminated as a factor affecting post-warming oocyte viability and development in many species, improving outcomes and allowing other deleterious effects of the cryopreservation cycle to be independently studied.
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Affiliation(s)
- Abdallah W Abdelhady
- Department of Clinical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA
- Division of Animal Sciences, University of Missouri, Columbia, MO, USA
| | - David W Mittan-Moreau
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
| | - Patrick L Crane
- Department of Clinical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA
| | | | - Soon Hon Cheong
- Department of Clinical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.
| | - Robert E Thorne
- Physics Department, Cornell University, Ithaca, NY, 14853, USA.
- MiTeGen, LLC, Ithaca, NY, 14850, USA.
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3
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Holzapfel WB, Klotz S. Thermophysical properties of H2O and D2O ice Ih with contributions from proton disorder, quenching, relaxation, and extended defects: A model case for solids with quenching and relaxation. J Chem Phys 2024; 160:154508. [PMID: 38634494 DOI: 10.1063/5.0203614] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 04/01/2024] [Indexed: 04/19/2024] Open
Abstract
Application of the coherent thermodynamic model [W. Holzapfel and S. Klotz, J. Chem. Phys. 155, 024506 (2021)] for H2O ice Ih to the more detailed data for D2O ice Ih provides better insight into the contributions from quenched proton disorder and offers a new basis for understanding the apparent differences between the data for thermal expansion measured with neutron diffraction on polycrystalline samples [A. Fortes, Acta Crystallogr., Sect. B: Struct. Sci., Cryst. Eng. Mater. 74, 196 (2018) and A. Fortes, Phys. Chem. Chem. Phys 21, 8264 (2019)] and macroscopic dilatation measurements on single crystals [D. Buckingham et al., Phys. Rev. Lett. 121, 185505 (2018)]. The comparison points to contributions from defects effecting the two techniques in different ways. The uncertainties in thermodynamic data due to the contributions from proton disorder and additional defects are compared with the "reference data" [R. Feistel and W. Wagner, J. Phys. Chem. Ref. Data 35, 1021 (2006)] for H2O ice Ih.
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Affiliation(s)
- W B Holzapfel
- Department Physik, Universität Paderborn, Paderborn D-33095, Germany
| | - S Klotz
- IMPMC, CNRS UMR 7590, Sorbonne Université, 4 Place Jussieu, Paris F-75252, France
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Abdelhady AW, Mittan-Moreau DW, Crane PL, McLeod MJ, Cheong SH, Thorne RE. Ice formation and its elimination in cryopreservation of bovine oocytes. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.11.15.567270. [PMID: 38014098 PMCID: PMC10680738 DOI: 10.1101/2023.11.15.567270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]
Abstract
Damage from ice and potential toxicity of ice-inhibiting cryoprotective agents (CPAs) are key issues in assisted reproduction using cryopreserved oocytes and embryos. We use synchrotron-based time-resolved x-ray diffraction and tools from protein cryocrystallography to characterize ice formation within bovine oocytes after cooling at rates between ∼1000 °C/min and ∼600,000°C /min and during warming at rates between 20,000 and 150,000 °C /min. Maximum crystalline ice diffraction intensity, maximum ice volume, and maximum ice grain size are always observed during warming. All decrease with increasing CPA concentration, consistent with the decreasing free water fraction. With the cooling rates, warming rates and CPA concentrations of current practice, oocytes may show no ice after cooling but always develop substantial ice fractions on warming, and modestly reducing CPA concentrations causes substantial ice to form during cooling. With much larger cooling and warming rates achieved using cryocrystallography tools, oocytes soaked as in current practice remain essentially ice free during both cooling and warming, and when soaked in half-strength CPA solution oocytes remain ice free after cooling and develop small grain ice during warming. These results clarify the roles of cooling, warming, and CPA concentration in generating ice in oocytes, establish the character of ice formed, and suggest that substantial further improvements in warming rates are feasible. Ice formation can be eliminated as a factor affecting post-thaw oocyte viability and development, allowing other deleterious effects of the cryopreservation cycle to be studied, and osmotic stress and CPA toxicity reduced. Significance Statement Cryopreservation of oocytes and embryos is critical in assisted reproduction of humans and domestic animals and in preservation of endangered species. Success rates are limited by damage from crystalline ice, toxicity of cryoprotective agents (CPAs), and damage from osmotic stress. Time-resolved x-ray diffraction of bovine oocytes shows that ice forms much more readily during warming than during cooling, that maximum ice fractions always occur during warming, and that the tools and large CPA concentrations of current protocols can at best only prevent ice formation during cooling. Using tools from cryocrystallography that give dramatically larger cooling and warming rates, ice formation can be completely eliminated and required CPA concentrations substantially reduced, expanding the scope for species-specific optimization of post-thaw reproductive outcomes.
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Rasti S, Jónsson EÖ, Jónsson H, Meyer J. New Insights into the Volume Isotope Effect of Ice Ih from Polarizable Many-Body Potentials. J Phys Chem Lett 2022; 13:11831-11836. [PMID: 36520035 PMCID: PMC9791686 DOI: 10.1021/acs.jpclett.2c03212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Accepted: 12/06/2022] [Indexed: 06/17/2023]
Abstract
The anomalous volume isotope effect (VIE) of ice Ih is calculated and analyzed based on the quasi-harmonic approximation to account for nuclear quantum effects in the Helmholtz free energy. While a lot of recently developed polarizable many-body potential functions give a normal VIE contrary to experimental results, we find that one of them, MB-pol, yields the anomalous VIE in good agreement with the most recent high-resolution neutron diffraction measurements─better than DFT calculations. The short-range three-body terms in the MB-pol function, which are fitted to CCSD(T) calculations, are found to have a surprisingly large influence. A vibrational mode group decomposition of the zero-point pressure together with a hitherto unconsidered benchmark value for the intramolecular stretching modes of H2O ice Ih obtained from Raman spectroscopy data unveils the reason for the VIE: a delicate competition between the latter and the librations.
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Affiliation(s)
- Soroush Rasti
- Leiden
Institute of Chemistry, Gorlaeus Laboratories, Leiden University, P.O. Box 9502, 2300 RALeiden, The Netherlands
| | - Elvar Örn Jónsson
- Science
Institute and Faculty of Physical Sciences, University of Iceland, VR-III, 107Reykjavík, Iceland
| | - Hannes Jónsson
- Science
Institute and Faculty of Physical Sciences, University of Iceland, VR-III, 107Reykjavík, Iceland
| | - Jörg Meyer
- Leiden
Institute of Chemistry, Gorlaeus Laboratories, Leiden University, P.O. Box 9502, 2300 RALeiden, The Netherlands
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Sacchi M, Tamtögl A. Water adsorption and dynamics on graphene and other 2D materials: Computational and experimental advances. ADVANCES IN PHYSICS: X 2022; 8:2134051. [PMID: 36816858 PMCID: PMC7614201 DOI: 10.1080/23746149.2022.2134051] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Revised: 09/26/2022] [Accepted: 09/27/2022] [Indexed: 06/18/2023] Open
Abstract
The interaction of water and surfaces, at molecular level, is of critical importance for understanding processes such as corrosion, friction, catalysis and mass transport. The significant literature on interactions with single crystal metal surfaces should not obscure unknowns in the unique behaviour of ice and the complex relationships between adsorption, diffusion and long-range inter-molecular interactions. Even less is known about the atomic-scale behaviour of water on novel, non-metallic interfaces, in particular on graphene and other 2D materials. In this manuscript, we review recent progress in the characterisation of water adsorption on 2D materials, with a focus on the nano-material graphene and graphitic nanostructures; materials which are of paramount importance for separation technologies, electrochemistry and catalysis, to name a few. The adsorption of water on graphene has also become one of the benchmark systems for modern computational methods, in particular dispersion-corrected density functional theory (DFT). We then review recent experimental and theoretical advances in studying the single-molecular motion of water at surfaces, with a special emphasis on scattering approaches as they allow an unparalleled window of observation to water surface motion, including diffusion, vibration and self-assembly.
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Affiliation(s)
- M. Sacchi
- Department of Chemistry, University of Surrey, Guildford GU2 7XH, UK
| | - A. Tamtögl
- Institute of Experimental Physics, Graz University of Technology, 8010 Graz, Austria
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Komatsu K. Neutrons meet ice polymorphs. CRYSTALLOGR REV 2022. [DOI: 10.1080/0889311x.2022.2127148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/10/2022]
Affiliation(s)
- Kazuki Komatsu
- Geochemical Research Center, Graduate School of Science, The University of Tokyo, Tokyo, Japan
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8
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Howard CM, Wood IG, Knight KS, Fortes AD. Ab initio simulations of α- and β-ammonium carbamate (NH 4·NH 2CO 2), and the thermal expansivity of deuterated α-ammonium carbamate from 4.2 to 180 K by neutron powder diffraction. ACTA CRYSTALLOGRAPHICA SECTION B, STRUCTURAL SCIENCE, CRYSTAL ENGINEERING AND MATERIALS 2022; 78:459-475. [PMID: 35702963 PMCID: PMC9254591 DOI: 10.1107/s2052520622002645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Accepted: 03/08/2022] [Indexed: 06/15/2023]
Abstract
Experimental and computational studies of ammonium carbamate have been carried out, with the objective of studying the elastic anisotropy of the framework manifested in (i) the thermal expansion and (ii) the compressibility; furthermore, the relative thermodynamic stability of the two known polymorphs has been evaluated computationally. Using high-resolution neutron powder diffraction data, the crystal structure of α-ammonium carbamate (ND4·ND2CO2) has been refined [space group Pbca, Z = 8, with a = 17.05189 (15), b = 6.43531 (7), c = 6.68093 (7) Å and V = 733.126 (9) Å3 at 4.2 K] and the thermal expansivity of α-ammonium carbamate has been measured over the temperature range 4.2-180 K. The expansivity shows a high degree of anisotropy, with the b axis most expandable. The ab initio computational studies were carried out on the α- and β-polymorphs of ammonium carbamate using density functional theory. Fitting equations of state to the P(V) points of the simulations (run athermally) gave the following values: V0 = 744 (2) Å3 and bulk modulus K0 = 16.5 (4) GPa for the α-polymorph, and V0 = 713.6 (5) Å3 and K0 = 24.4 (4) GPa for the β-polymorph. The simulations show good agreement with the thermoelastic behaviour of α-ammonium carbamate. Both phases show a high-degree of anisotropy; in particular, α-ammonium carbamate shows unusual compressive behaviour, being determined to have negative linear compressibility (NLC) along its a axis above 5 GPa. The thermodynamically stable phase at ambient pressure is the α-polymorph, with a calculated enthalpy difference with respect to the β-polymorph of 0.399 kJ mol-1; a transition to the β-polymorph could occur at ∼0.4 GPa.
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Affiliation(s)
- Christopher M. Howard
- Bayerisches Geoinstitut (BGI), University of Bayreuth, 95447 Bayreuth, Germany
- Department of Earth Sciences, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Ian G. Wood
- Department of Earth Sciences, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Kevin S. Knight
- Department of Earth Sciences, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - A. Dominic Fortes
- Department of Earth Sciences, University College London, Gower Street, London WC1E 6BT, United Kingdom
- ISIS Facility, Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0QX, United Kingdom
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9
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Joliat J, Picaud S, Patt A, Jedlovszky P. Adsorption of C2-C5 alcohols on ice. A grand canonical Monte Carlo simulation study. J Chem Phys 2022; 156:224702. [DOI: 10.1063/5.0096013] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this paper, we report Grand Canonical Monte Carlo simulations performed to characterize the adsorption of four linear alcohol molecules, comprising between 2 and 5 carbon atoms (namely, ethanol, n-propanol, n-butanol, and n-pentanol) on crystalline ice in a temperature range typical of the Earth's troposphere.The adsorption details analysed at 228 K show that, at low coverage of the ice surface, the polar head of the adsorbed molecules tend to optimize its hydrogen bonding with the surrounding water, whereas the aliphatic chain lie more or less parallel to the ice surface. With increasing coverage, the lateral interactions between the adsorbed alcohol molecules lead to the reorientation of the aliphatic chains which tend to become perpendicular to the surface, the adsorbed molecules pointing thus their terminal methyl group up to the gas phase. When compared to the experimental data, the simulated and measured isotherms show a very good agreement, although a small temperature shift between simulations and experiments could be inferred from simulations at various temperatures. In addition, this agreement appears to be better for ethanol and n-propanol than for n-butanol and n-pentanol, especially at the highest pressures investigated, pointing to a possible slight underestimation of the lateral interactions between the largest alcohol molecules by the interaction potential model used. Nevertheless, the global accuracy of the approach used, as tested in tropospheric conditions, opens the way for its use in modeling studies also relevant to another (e.g., astrophysical) context.
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Affiliation(s)
| | - Sylvain Picaud
- U.F.R. des Sciences et des techniques, Institut UTINAM, France
| | | | - Pál Jedlovszky
- Department of Chemistry, Eszterhazy Karoly University, Hungary
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10
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Fukui H, Kadobayashi H, Abe H, Takahashi R, Wadati H, Hirao N. Equation of states for dense ice up to 80 GPa at low-temperature conditions. J Chem Phys 2022; 156:064504. [DOI: 10.1063/5.0084278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Hiroshi Fukui
- Graduate School of Science, University of Hyogo, Kouto 3-2-1, Kamigori, Hyogo 678-1297, Japan
| | | | - Hirotaka Abe
- Graduate School of Science, University of Hyogo, Kouto 3-2-1, Kamigori, Hyogo 678-1297, Japan
| | - Ryunosuke Takahashi
- Graduate School of Science, University of Hyogo, Kouto 3-2-1, Kamigori, Hyogo 678-1297, Japan
| | - Hiroki Wadati
- Graduate School of Science, University of Hyogo, Kouto 3-2-1, Kamigori, Hyogo 678-1297, Japan
- Institute of Laser Engineering, Osaka University, Suita, Osaka 565-0871, Japan
| | - Naohisa Hirao
- Japan Synchrotron Radiation Research Institute, Kouto 1-1-1, Sayo, Hyogo 679-5198, Japan
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Tanaka H, Yagasaki T, Matsumoto M. On the role of intermolecular vibrational motions for ice polymorphs. III. Mode characteristics associated with negative thermal expansion. J Chem Phys 2021; 155:214502. [PMID: 34879657 DOI: 10.1063/5.0068560] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Low-pressure ice forms, such as hexagonal and cubic ice, expand on cooling below temperature 60 K. This negative thermal expansivity has been explored in terms of phonon frequency modulation with varying volume and attributed to the negative Grüneisen parameters unique mostly to tetrahedrally coordinated substances. However, an underlying mechanism for the negative Grüneisen parameters has not been known except some schematic analyses. We investigate in this study the characteristics of the intermolecular vibrational modes whose Grüneisen parameters are negative by examining the individual vibrational modes rigorously. It is found that the low frequency modes below 100 cm-1, which we explicitly show are mostly bending motions of three hydrogen-bonded molecules, necessarily accompany elongation of the hydrogen bond length at peak amplitudes compared with that at the equilibrium position in executing the vibrational motions. The elongation gives rise to a decrease in the repulsive interaction while an increase in the Coulombic one. The decrease in the repulsive interaction is relaxed substantially by expansion due to its steep slope against molecular separation compared with the sluggish increase in the Coulombic one, and therefore, the negative Grüneisen parameters are obtainable. This scenario is tested against some variants of cubic ice with various water potential models. It is demonstrated that four interaction-site models are suitable to describe the intermolecular vibrations and the thermal expansivity because of the moderate tendency to favor the tetrahedral coordination.
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Affiliation(s)
- Hideki Tanaka
- Toyota Physical and Chemical Research Institute, Nagakute 480-1192, Japan
| | - Takuma Yagasaki
- Division of Chemical Engineering, Graduate School of Engineering Science, Osaka University, Osaka 560-8531, Japan
| | - Masakazu Matsumoto
- Research Institute for Interdisciplinary Science, Okayama University, Okayama 700-8530, Japan
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12
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Cherubini M, Monacelli L, Mauri F. The microscopic origin of the anomalous isotopic properties of ice relies on the strong quantum anharmonic regime of atomic vibration. J Chem Phys 2021; 155:184502. [PMID: 34773945 DOI: 10.1063/5.0062689] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Water ice is a unique material presenting intriguing physical properties, such as negative thermal expansion and anomalous volume isotope effect (VIE). They arise from the interplay between weak hydrogen bonds and nuclear quantum fluctuations, making theoretical calculations challenging. Here, we employ the stochastic self-consistent harmonic approximation to investigate how thermal and quantum fluctuations affect the physical properties of ice XI with ab initio accuracy. Regarding the anomalous VIE, our work reveals that quantum effects on hydrogen are so strong to be in a nonlinear regime: When progressively increasing the mass of hydrogen from protium to infinity (classical limit), the volume first expands and then contracts, with a maximum slightly above the mass of tritium. We observe an anharmonic renormalization of about 10% in the bending and stretching phonon frequencies probed in IR and Raman experiments. For the first time, we report an accurate comparison of the low-energy phonon dispersion with the experimental data, possible only thanks to high-level accuracy in the electronic correlation and nuclear quantum and thermal fluctuations, paving the way for the study of thermal transport in ice from first-principles and the simulation of ice under pressure.
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Affiliation(s)
- Marco Cherubini
- Dipartimento di Fisica, Università di Roma Sapienza, Piazzale Aldo Moro 5, I-00185 Roma, Italy
| | - Lorenzo Monacelli
- Dipartimento di Fisica, Università di Roma Sapienza, Piazzale Aldo Moro 5, I-00185 Roma, Italy
| | - Francesco Mauri
- Dipartimento di Fisica, Università di Roma Sapienza, Piazzale Aldo Moro 5, I-00185 Roma, Italy
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Thompson SP, Kennedy H, Butler BM, Day SJ, Safi E, Evans A. Laboratory exploration of mineral precipitates from Europa's subsurface ocean. J Appl Crystallogr 2021; 54:1455-1479. [PMID: 34667451 PMCID: PMC8493616 DOI: 10.1107/s1600576721008554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Accepted: 08/17/2021] [Indexed: 11/10/2022] Open
Abstract
The precipitation of hydrated phases from a chondrite-like Na-Mg-Ca-SO4-Cl solution is studied using in situ synchrotron X-ray powder diffraction, under rapid- (360 K h-1, T = 250-80 K, t = 3 h) and ultra-slow-freezing (0.3 K day-1, T = 273-245 K, t = 242 days) conditions. The precipitation sequence under slow cooling initially follows the predictions of equilibrium thermodynamics models. However, after ∼50 days at 245 K, the formation of the highly hydrated sulfate phase Na2Mg(SO4)2·16H2O, a relatively recent discovery in the Na2Mg(SO4)2-H2O system, was observed. Rapid freezing, on the other hand, produced an assemblage of multiple phases which formed within a very short timescale (≤4 min, ΔT = 2 K) and, although remaining present throughout, varied in their relative proportions with decreasing temperature. Mirabilite and meridianiite were the major phases, with pentahydrite, epsomite, hydrohalite, gypsum, blödite, konyaite and loweite also observed. Na2Mg(SO4)2·16H2O was again found to be present and increased in proportion relative to other phases as the temperature decreased. The results are discussed in relation to possible implications for life on Europa and application to other icy ocean worlds.
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Affiliation(s)
- Stephen P. Thompson
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
| | - Hilary Kennedy
- School of Ocean Sciences, Bangor University, Menai Bridge, Anglesey LL59 5AB, United Kingdom
| | - Benjamin M. Butler
- Environmental and Biochemical Sciences, The James Hutton Institute, Craigiebuckler, Aberdeen AB15 8QH, United Kingdom
| | - Sarah J. Day
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
| | - Emmal Safi
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
- Astrophysics Group, Lennard-Jones Laboratories, Keele University, Keele, Staffordshire ST5 5BG, United Kingdom
| | - Aneurin Evans
- Astrophysics Group, Lennard-Jones Laboratories, Keele University, Keele, Staffordshire ST5 5BG, United Kingdom
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14
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Holzapfel WB, Klotz S. Coherent thermodynamic model for ice Ih-A model case for complex behavior. J Chem Phys 2021; 155:024506. [PMID: 34266244 DOI: 10.1063/5.0049215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
New data on the variation of the thermal expansion of ice Ih with temperature at ambient pressure together with new evaluations of the bulk modulus and earlier data for the heat capacity provide the basis for a coherent thermodynamic modeling of the main thermophysical properties of ice Ih over its whole range of stability. The quasi-harmonic approximation with one Debye term and seven Einstein terms, together with explicit anharmonicity, represents the dominant contribution next to minor "anomalies" from hydrogen ordering and lattice defects. The model accurately fits the main features of all experimental data and provides a basis for the comparison with earlier determinations of the phonon density of states and the Grüneisen parameters.
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Affiliation(s)
| | - Stefan Klotz
- IMPMC, CNRS UMR 7590, Sorbonne Université, 4 Place Jussieu, F-75252 Paris, France
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15
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Daigle H. Structure of the electrical double layer at the ice-water interface. J Chem Phys 2021; 154:214703. [PMID: 34240978 DOI: 10.1063/5.0048817] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
The surface of ice in contact with water contains sites that undergo deprotonation and protonation and can act as adsorption sites for aqueous ions. Therefore, an electrical double layer should form at this interface and existing models for describing the electrical double layer at metal oxide-water interfaces should be able to be modified to describe the surface charge, surface potential, and ionic occupancy at the ice-water interface. I used a surface complexation model along with literature measurements of the zeta potential of ice in brines of various strength and pH to constrain equilibrium constants. I then made predictions of ion site occupancy, surface charge density, and partitioning of counterions between the Stern and diffuse layers. The equilibrium constant for cation adsorption is more than 5 orders of magnitude larger than the other constants, indicating that this reaction dominates even at low salinity. Deprotonated OH sites are predicted to be slightly more abundant than dangling O sites, consistent with previous work. Surface charge densities are on the order of ±0.001 C/m2 and are always negative at the moderate pH values of interest to atmospheric and geophysical applications (6-9). In this pH range, over 99% of the counterions are contained in the Stern layer. This suggests that diffuse layer polarization will not occur because the ionic concentrations in the diffuse layer are nearly identical to those in the bulk electrolyte and that electrical conduction and polarization in the Stern layer will be negligible due to reduced ion mobility.
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Affiliation(s)
- Hugh Daigle
- Center for Subsurface Energy and the Environment, The University of Texas at Austin, Austin, Texas 78712, USA
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16
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Moreau DW, Atakisi H, Thorne RE. Ice in biomolecular cryocrystallography. Acta Crystallogr D Struct Biol 2021; 77:540-554. [PMID: 33825714 PMCID: PMC8025888 DOI: 10.1107/s2059798321001170] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Accepted: 02/01/2021] [Indexed: 12/05/2022] Open
Abstract
Diffraction data acquired from cryocooled protein crystals often include diffraction from ice. Analysis of ice diffraction from crystals of three proteins shows that the ice formed within solvent cavities during rapid cooling is comprised of a stacking-disordered mixture of hexagonal and cubic planes, with the cubic plane fraction increasing with increasing cryoprotectant concentration and increasing cooling rate. Building on the work of Thorn and coworkers [Thorn et al. (2017), Acta Cryst. D73, 729-727], a revised metric is defined for detecting ice from deposited protein structure-factor data, and this metric is validated using full-frame diffraction data from the Integrated Resource for Reproducibility in Macromolecular Crystallography. Using this revised metric and improved algorithms, an analysis of structure-factor data from a random sample of 89 827 PDB entries collected at cryogenic temperatures indicates that roughly 16% show evidence of ice contamination, and that this fraction increases with increasing solvent content and maximum solvent-cavity size. By examining the ice diffraction-peak positions at which structure-factor perturbations are observed, it is found that roughly 25% of crystals exhibit ice with primarily hexagonal character, indicating that inadequate cooling rates and/or cryoprotectant concentrations were used, while the remaining 75% show ice with a stacking-disordered or cubic character.
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Affiliation(s)
- David W. Moreau
- Physics Department, Cornell University, Ithaca, NY 14853, USA
| | - Hakan Atakisi
- Physics Department, Cornell University, Ithaca, NY 14853, USA
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17
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Sharif Z, Shephard JJ, Slater B, Bull CL, Hart M, Salzmann CG. Effect of ammonium fluoride doping on the ice III to ice IX phase transition. J Chem Phys 2021; 154:114502. [DOI: 10.1063/5.0032485] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Zainab Sharif
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
| | - Jacob J. Shephard
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
| | - Ben Slater
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
| | - Craig L. Bull
- ISIS Pulsed Neutron and Muon Source, Rutherford Appleton Laboratory, Harwell Oxford, Didcot OX11 0QX, United Kingdom
| | - Martin Hart
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
| | - Christoph G. Salzmann
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom
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18
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Gasser TM, Thoeny AV, Fortes AD, Loerting T. Structural characterization of ice XIX as the second polymorph related to ice VI. Nat Commun 2021; 12:1128. [PMID: 33602946 PMCID: PMC7892819 DOI: 10.1038/s41467-021-21161-z] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Accepted: 01/15/2021] [Indexed: 11/09/2022] Open
Abstract
Ice polymorphs usually appear as hydrogen disorder-order pairs. Ice VI has a wide range of thermodynamic stability and exists in the interior of Earth and icy moons. Our previous work suggested ice β-XV as a second polymorph deriving from disordered ice VI, in addition to ice XV. Here we report thermal and structural characterization of the previously inaccessible deuterated polymorph using ex situ calorimetry and high-resolution neutron powder diffraction. Ice β-XV, now called ice XIX, is shown to be partially antiferroelectrically ordered and crystallising in a √2×√2×1 supercell. Our powder data recorded at subambient pressure fit best to the structural model in space group [Formula: see text]. Key to the synthesis of deuterated ice XIX is the use of a DCl-doped D2O/H2O mixture, where the small H2O fraction enhances ice XIX nucleation kinetics. In addition, we observe the transition from ice XIX to its sibling ice XV upon heating, which proceeds via a transition state (ice VI‡) containing a disordered H-sublattice. To the best of our knowledge this represents the first order-order transition known in ice physics.
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Affiliation(s)
- Tobias M Gasser
- Institute of Physical Chemistry, University of Innsbruck, Innsbruck, Austria
| | - Alexander V Thoeny
- Institute of Physical Chemistry, University of Innsbruck, Innsbruck, Austria
| | - A Dominic Fortes
- ISIS Neutron and Muon Facility, Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Chilton, Oxfordshire, OX11 0QX, UK
| | - Thomas Loerting
- Institute of Physical Chemistry, University of Innsbruck, Innsbruck, Austria.
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19
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Cheng YQ, Kolesnikov AI, Ramirez-Cuesta AJ. Simulation of Inelastic Neutron Scattering Spectra Directly from Molecular Dynamics Trajectories. J Chem Theory Comput 2020; 16:7702-7708. [PMID: 33156633 DOI: 10.1021/acs.jctc.0c00937] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Inelastic neutron scattering (INS) is a widely used technique to study atomic and molecular vibrations. With the increasing complexity of materials and thus the INS spectra, being able to simulate the spectra from various atomistic models becomes an essential step and also a major bottleneck for INS data analysis. The conventional approach using density functional theory and lattice dynamics often falls short when the materials of interest are complex (e.g., defective, disordered, heterogeneous, amorphous, large-scale), for which molecular dynamics driven by an interatomic force field is a more common approach. In this paper, we demonstrate a method to directly convert molecular dynamics trajectories into simulated INS spectra, including not only fundamental but also higher order excitations. The results are compared with data collected on various representative samples from different neutron spectrometers. This development will open great opportunities by providing the key tool to perform in-depth analysis of INS data and to validate and optimize computer models.
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Affiliation(s)
- Y Q Cheng
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - A I Kolesnikov
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - A J Ramirez-Cuesta
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
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20
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Fuentes-Landete V, Rasti S, Schlögl R, Meyer J, Loerting T. Calorimetric Signature of Deuterated Ice II: Turning an Endotherm to an Exotherm. J Phys Chem Lett 2020; 11:8268-8274. [PMID: 32902994 PMCID: PMC7528406 DOI: 10.1021/acs.jpclett.0c02368] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 09/09/2020] [Indexed: 06/11/2023]
Abstract
Calorimetric studies on ice II reveal a surprising H2O/D2O isotope effect. While the ice II to ice Ic transition is endothermic for H2O, it is exothermic for D2O samples. The transition enthalpies are +40 and -140 J/mol, respectively, where such a sign change upon isotope substitution is unprecedented in ice research. To understand the observations we employ force field calculations using two water models known to perform well for H2O ice phases and their vibrational properties. These simulations reveal that the isotope effect can be traced back to zero-point energy. q-TIP4P/F fares better and is able to account for approximately three-fourths of the isotope effect, while MB-pol only catches approximately one-third. Phonon and configurational entropy contributions are necessary to predict reasonable transition enthalpies, but they do not have an impact on the isotope effect. We suggest to use these calorimetric isotope data as a benchmark for water models.
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Affiliation(s)
- Violeta Fuentes-Landete
- Institute
of Physical Chemistry, University of Innsbruck, Innrain 52c, 6020 Innsbruck, Austria
- Max
Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Soroush Rasti
- Leiden
Institute of Chemistry, Gorlaeus Laboratories, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Robert Schlögl
- Max
Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Jörg Meyer
- Leiden
Institute of Chemistry, Gorlaeus Laboratories, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Thomas Loerting
- Institute
of Physical Chemistry, University of Innsbruck, Innrain 52c, 6020 Innsbruck, Austria
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21
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Salzmann CG, Rosu-Finsen A. The crystallography of Pluto. IUCRJ 2020; 7:782-783. [PMID: 32939269 PMCID: PMC7467172 DOI: 10.1107/s205225252001163x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Maynard-Casely and co-workers [IUCrJ (2020). 7, 844-851.] investigate two of Pluto's most abundant minerals with neutron diffraction. The new results will be key to understanding the geology of our distant neighbour and represent a significant advance in the emerging field of small-molecule geology.
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Affiliation(s)
- Christoph G. Salzmann
- University College London, Department of Chemistry, 20 Gordon Street, London WC1H 0AJ, United Kingdom
| | - Alexander Rosu-Finsen
- University College London, Department of Chemistry, 20 Gordon Street, London WC1H 0AJ, United Kingdom
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22
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Fortes AD, Ponsonby J, Kirichek O, García-Sakai V. On the crystal structures and phase transitions of hydrates in the binary dimethyl sulfoxide–water system. ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS 2020; 76:733-748. [DOI: 10.1107/s2052520620008999] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 07/01/2020] [Indexed: 11/10/2022]
Abstract
Neutron powder diffraction data have been collected from a series of flash-frozen aqueous solutions of dimethyl sulfoxide (DMSO) with concentrations between 25 and 66.7 mol% DMSO. These reveal the existence of three stoichiometric hydrates, which crystallize on warming between 175 and 195 K. DMSO trihydrate crystallizes in the monoclinic space group P21/c, with unit-cell parameters at 195 K of a = 10.26619 (3), b = 7.01113 (2), c = 10.06897 (3) Å, β = 101.5030 (2)° and V = 710.183 (3) Å3 (Z = 4). Two of the symmetry-inequivalent water molecules form a sheet of tiled four- and eight-sided rings; the DMSO molecules are sandwiched between these sheets and linked along the b axis by the third water molecule to generate water–DMSO–water tapes. Two different polymorphs of DMSO dihydrate have been identified. The α phase is monoclinic (space group P21/c), with unit-cell parameters at 175 K of a = 6.30304 (4), b = 9.05700 (5), c = 11.22013 (7) Å, β = 105.9691 (4)° and V = 615.802 (4) Å3 (Z = 4). Its structure contains water–DMSO–water chains, but these are polymerized in such a manner as to form sheets of reniform eight-sided rings, with the methyl groups extending on either side of the sheet. On warming above 198 K, α-DMSO·2H2O undergoes a solid-state transformation to a mixture of DMSO·3H2O + anhydrous DMSO, and there is then a stable eutectic between these two phases at ∼203 K. The β-phase of DMSO dihydrate has been observed in a rapidly frozen eutectic melt and in very DMSO-rich mixtures. It is observed to be unstable with respect to the α-phase; above ∼180 K, β-DMSO·2H2O converts irreversibly to α-DMSO·2H2O. At 175 K, the lattice parameters of β-DMSO·2H2O are a = 6.17448 (10), b = 11.61635 (16), c = 8.66530 (12) Å, β = 101.663 (1)° and V = 608.684 (10) Å3 (Z = 4), hence this polymorph is just 1.16% denser than the α-phase under identical conditions. Like the other two hydrates, the space group appears likely, on the basis of systematic absences, to be P21/c, but the structure has not yet been determined. Our results reconcile 60 years of contradictory interpretations of the phase relations in the binary DMSO–water system, particularly between mole fractions of 0.25–0.50, and confirm empirical and theoretical studies of the liquid structure around the eutectic composition (33.33 mol% DMSO).
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23
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Del Rosso L, Celli M, Grazzi F, Catti M, Hansen TC, Fortes AD, Ulivi L. Cubic ice Ic without stacking defects obtained from ice XVII. NATURE MATERIALS 2020; 19:663-668. [PMID: 32015533 DOI: 10.1038/s41563-020-0606-y] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2019] [Accepted: 01/06/2020] [Indexed: 06/10/2023]
Abstract
Amongst the more than 18 different forms of water ice, only the common hexagonal phase and the cubic phase are present in nature on Earth. Nonetheless, it is now widely recognized that all samples of 'cubic ice' discovered so far do not have a fully cubic crystal structure but instead are stacking-disordered forms of ice I (namely, ice Isd), which contain both hexagonal and cubic stacking sequences of hydrogen-bonded water molecules. Here, we describe a method to obtain large quantities of cubic ice Ic with high structural purity. Cubic ice Ic is formed by heating a powder of D2O ice XVII obtained from annealing of pristine C0 hydrate samples under dynamic vacuum. Neutron diffraction experiments performed on two different instruments and Raman spectroscopy measurements confirm the structural purity of the cubic ice, Ic. These findings contribute to a better understanding of ice I polymorphism and the existence of the two natural ice forms.
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Affiliation(s)
- Leonardo Del Rosso
- Consiglio Nazionale delle Ricerche, Istituto di Fisica Applicata 'Nello Carrara', Sesto Fiorentino, Italy.
| | - Milva Celli
- Consiglio Nazionale delle Ricerche, Istituto di Fisica Applicata 'Nello Carrara', Sesto Fiorentino, Italy
| | - Francesco Grazzi
- Consiglio Nazionale delle Ricerche, Istituto di Fisica Applicata 'Nello Carrara', Sesto Fiorentino, Italy
| | - Michele Catti
- Dipartimento di Scienza dei Materiali, Università di Milano Bicocca, Milano, Italy
| | | | - A Dominic Fortes
- ISIS Neutron and Muon Facility, Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, Chilton, UK
| | - Lorenzo Ulivi
- Consiglio Nazionale delle Ricerche, Istituto di Fisica Applicata 'Nello Carrara', Sesto Fiorentino, Italy.
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24
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Lukić MJ, Gebauer D, Rose A. Nonclassical nucleation towards separation and recycling science: Iron and aluminium (Oxy)(hydr)oxides. Curr Opin Colloid Interface Sci 2020. [DOI: 10.1016/j.cocis.2020.03.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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25
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Reply to comment: Non-classical nucleation towards separation and recycling science: Iron and aluminium (oxy)(hydr)oxides. Curr Opin Colloid Interface Sci 2020. [DOI: 10.1016/j.cocis.2020.07.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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26
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Comment: Non-classical nucleation towards separation and recycling science: Iron and aluminium (Oxy)(hydr)oxides. Curr Opin Colloid Interface Sci 2020. [DOI: 10.1016/j.cocis.2020.07.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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27
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Tanaka H, Yagasaki T, Matsumoto M. On the role of intermolecular vibrational motions for ice polymorphs I: Volumetric properties of crystalline and amorphous ices. J Chem Phys 2019; 151:114501. [PMID: 31542026 DOI: 10.1063/1.5119748] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Intermolecular vibrations and volumetric properties are investigated using the quasiharmonic approximation with the TIP4P/2005, TIP4P/Ice, and SPC/E potential models for most of the known crystalline and amorphous ice forms that have hydrogen-disordering. The ice forms examined here cover low pressure ices (hexagonal and cubic ice I, XVI, and hypothetical dtc ice), medium pressure ices (III, IV, V, VI, XII, hydrogen-disordered variant of ice II), and high pressure ice (VII) as well as the low density and the high density amorphous forms. We focus on the thermal expansivities and the isothermal compressibilities in the low temperature regime over a wide range of pressures calculated via the intermolecular vibrational free energies. Negative thermal expansivity appears only in the low pressure ice forms. The sign of the thermal expansivity is elucidated in terms of the mode Grüneisen parameters of the low frequency intermolecular vibrational motions. Although the band structure for the low frequency region of the vibrational density of state in the medium pressure ice has a close resemblance to that in the low pressure ice, its response against volume variation is opposite. We reveal that the mixing of translational and rotational motions in the low frequency modes plays a crucial role in the appearance of the negative thermal expansivity in the low pressure ice forms. The medium pressure ices can be further divided into two groups in terms of the hydrogen-bond network flexibility, which is manifested in the properties on the molecular rearrangement against volume variation, notably the isothermal compressibility.
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Affiliation(s)
- Hideki Tanaka
- Research Institute for Interdisciplinary Science, Okayama University, Okayama 700-8530, Japan
| | - Takuma Yagasaki
- Research Institute for Interdisciplinary Science, Okayama University, Okayama 700-8530, Japan
| | - Masakazu Matsumoto
- Research Institute for Interdisciplinary Science, Okayama University, Okayama 700-8530, Japan
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28
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Proton disorder and elasticity of hexagonal ice and gas hydrates. J Mol Model 2019; 25:32. [DOI: 10.1007/s00894-018-3919-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Accepted: 12/26/2018] [Indexed: 10/27/2022]
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29
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Fortes AD. Structural manifestation of partial proton ordering and defect mobility in ice Ih. Phys Chem Chem Phys 2019; 21:8264-8274. [DOI: 10.1039/c9cp01234f] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
High precision lattice-parameter measurements provide a potential roadmap to producing partially-ordered states of water ice.
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Affiliation(s)
- A. D. Fortes
- ISIS Neutron & Muon Spallation Source
- Rutherford Appleton Laboratory
- Harwell Science and Innovation Campus
- Chilton
- UK
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30
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Schran C, Marx D. Quantum nature of the hydrogen bond from ambient conditions down to ultra-low temperatures. Phys Chem Chem Phys 2019; 21:24967-24975. [DOI: 10.1039/c9cp04795f] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Quantum simulations reveal strong temperature effects for weak hydrogen bonds and differences in quantum delocalization between various hydrogen-bonded systems.
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Affiliation(s)
- Christoph Schran
- Lehrstuhl für Theoretische Chemie
- Ruhr-Universität Bochum
- 44780 Bochum
- Germany
| | - Dominik Marx
- Lehrstuhl für Theoretische Chemie
- Ruhr-Universität Bochum
- 44780 Bochum
- Germany
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31
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Buckingham DTW, Neumeier JJ, Masunaga SH, Yu YK. Thermal Expansion of Single-Crystal H_{2}O and D_{2}O Ice Ih. PHYSICAL REVIEW LETTERS 2018; 121:185505. [PMID: 30444387 DOI: 10.1103/physrevlett.121.185505] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2018] [Revised: 10/06/2018] [Indexed: 06/09/2023]
Abstract
Thermal expansion of H_{2}O and D_{2}O ice Ih with relative resolution of 1 ppb is reported. A large transition in the thermal expansion coefficient at 101 K in H_{2}O moves to 125 K in D_{2}O, revealing one of the largest-known isotope effects. Rotational oscillatory modes that couple poorly to phonons, i.e., lattice solitons, may be responsible.
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Affiliation(s)
| | - J J Neumeier
- Physics Department, Montana State University, Bozeman, Montana 59717-3840, USA
| | - Sueli H Masunaga
- Physics Department, Montana State University, Bozeman, Montana 59717-3840, USA
| | - Yi-Kuo Yu
- National Center for Biotechnology Information, 8600 Rockville Pike, Bethesda, Maryland 20894, USA
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32
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Fortes AD, Capelli SC. H/D isotope effect on the molar volume and thermal expansion of benzene. Phys Chem Chem Phys 2018; 20:16736-16742. [PMID: 29881856 DOI: 10.1039/c8cp02500b] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Time-of-flight neutron powder diffraction data have been collected from C6H6 and C6D6 between 10 and 276 K, revealing no cross-over in their molar volumes and an almost temperature invariant volume-isotope-effect, in contrast with previously published work.
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Affiliation(s)
- A. D. Fortes
- ISIS Facility
- Rutherford Appleton Laboratory
- Harwell Science and Innovation Campus
- Oxfordshire
- UK
| | - S. C. Capelli
- ISIS Facility
- Rutherford Appleton Laboratory
- Harwell Science and Innovation Campus
- Oxfordshire
- UK
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