1
|
Zhang A, Yang X, Li T, Dou M, Yang H. Classification Method of ECG Signals Based on RANet. Cardiovasc Eng Technol 2024:10.1007/s13239-024-00730-5. [PMID: 38653933 DOI: 10.1007/s13239-024-00730-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 04/05/2024] [Indexed: 04/25/2024]
Abstract
BACKGROUND Electrocardiograms (ECG) are an important source of information on human heart health and are widely used to detect different types of arrhythmias. OBJECTIVE With the advancement of deep learning, end-to-end ECG classification models based on neural networks have been developed. However, deeper network layers lead to gradient vanishing. Moreover, different channels and periods of an ECG signal hold varying significance for identifying different types of ECG abnormalities. METHODS To solve these two problems, an ECG classification method based on a residual attention neural network is proposed in this paper. The residual network (ResNet) is used to solve the gradient vanishing problem. Moreover, it has fewer model parameters, and its structure is simpler. An attention mechanism is added to focus on key information, integrate channel features, and improve voting methods to alleviate the problem of data imbalance. RESULTS Experiments and verifications are conducted using the PhysioNet/CinC Challenge 2017 dataset. The average F1 value is 0.817, which is 0.064 higher than that for the ResNet model. Compared with the mainstream methods, the performance is excellent.
Collapse
Affiliation(s)
- Aoxiang Zhang
- Faculty of Information, Beijing University of Technology, Beijing, China
| | - Xinwu Yang
- Faculty of Information, Beijing University of Technology, Beijing, China.
| | - Tong Li
- Faculty of Information, Beijing University of Technology, Beijing, China
| | - Mengfei Dou
- Faculty of Information, Beijing University of Technology, Beijing, China
| | - Hongxiao Yang
- Faculty of Information, Beijing University of Technology, Beijing, China
| |
Collapse
|
2
|
Ng Y, Liao MT, Chen TL, Lee CK, Chou CY, Wang W. Few-shot transfer learning for personalized atrial fibrillation detection using patient-based siamese network with single-lead ECG records. Artif Intell Med 2023; 144:102644. [PMID: 37783539 DOI: 10.1016/j.artmed.2023.102644] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Revised: 06/15/2023] [Accepted: 08/28/2023] [Indexed: 10/04/2023]
Abstract
The proliferation of wearable devices has allowed the collection of electrocardiogram (ECG) recordings daily to monitor heart rhythm and rate. For example, 24-hour Holter monitors, cardiac patches, and smartwatches are widely used for ECG gathering and application. An automatic atrial fibrillation (AF) detector is required for timely ECG interpretation. Deep learning models can accurately identify AFs if large amounts of annotated data are available for model training. However, it is impractical to request sufficient labels for ECG recordings for an individual patient to train a personalized model. We propose a Siamese-network-based approach for transfer learning to address this issue. A pre-trained Siamese convolutional neural network is created by comparing two labeled ECG segments from the same patient. We sampled 30-second ECG segments with a 50% overlapping window from the ECG recordings of patients in the MIT-BIH Atrial Fibrillation Database. Subsequently, we independently detected the occurrence of AF in each patient in the Long-Term AF Database. By fine-tuning the model with the 1, 3, 5, 7, 9, or 11 ECG segments ranging from 30 to 180 s, our method achieved macro-F1 scores of 96.84%, 96.91%, 96.97%, 97.02%, 97.05%, and 97.07%, respectively.
Collapse
Affiliation(s)
- Yiuwai Ng
- Institute of Applied Mathematical Sciences, National Taiwan University, Taipei, Taiwan.
| | - Min-Tsun Liao
- Division of Cardiology, Department of Internal Medicine, National Taiwan University Hospital Hsin-Chu Branch, Hsinchu, Taiwan; Department of Internal Medicine, College of Medicine, National Taiwan University, Taipei, Taiwan.
| | - Ting-Li Chen
- Institute of Statistical Science, Academia Sinica, Taipei, Taiwan.
| | - Chih-Kuo Lee
- Division of Cardiology, Department of Internal Medicine, National Taiwan University Hospital Hsin-Chu Branch, Hsinchu, Taiwan.
| | - Cheng-Ying Chou
- Department of Biomechatronics Engineering, National Taiwan University, Taipei, Taiwan.
| | - Weichung Wang
- Institute of Applied Mathematical Sciences, National Taiwan University, Taipei, Taiwan.
| |
Collapse
|
3
|
Fu J, Li W, Peng X, Du J, Ouyang A, Wang Q, Chen X. MDRANet: A multiscale dense residual attention network for magnetic resonance and nuclear medicine image fusion. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
|
4
|
A novel deep neural network for detection of Atrial Fibrillation using ECG signals. Knowl Based Syst 2022. [DOI: 10.1016/j.knosys.2022.109926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
5
|
Alsaleem MN, Islam MS, Al-Ahmadi S, Soudani A. Multiscale Encoding of Electrocardiogram Signals with a Residual Network for the Detection of Atrial Fibrillation. BIOENGINEERING (BASEL, SWITZERLAND) 2022; 9:bioengineering9090480. [PMID: 36135025 PMCID: PMC9495512 DOI: 10.3390/bioengineering9090480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 09/09/2022] [Accepted: 09/14/2022] [Indexed: 11/16/2022]
Abstract
Atrial fibrillation (AF) is one of the most common cardiac arrhythmias, and it is an indication of high-risk factors for stroke, myocardial ischemia, and other malignant cardiovascular diseases. Most of the existing AF detection methods typically convert one-dimensional time-series electrocardiogram (ECG) signals into two-dimensional representations to train a deep and complex AF detection system, which results in heavy training computation and high implementation costs. In this paper, a multiscale signal encoding scheme is proposed to improve feature representation and detection performance without the need for using any transformation or handcrafted feature engineering techniques. The proposed scheme uses different kernel sizes to produce the encoded signal by using multiple streams that are passed into a one-dimensional sequence of blocks of a residual convolutional neural network (ResNet) to extract representative features from the input ECG signal. This also allows networks to grow in breadth rather than in depth, thus reducing the computing time by using the parallel processing capability of deep learning networks. We investigated the effects of the use of a different number of streams with different kernel sizes on the performance. Experiments were carried out for a performance evaluation using the publicly available PhysioNet CinC Challenge 2017 dataset. The proposed multiscale encoding scheme outperformed existing deep learning-based methods with an average F1 score of 98.54%, but with a lower network complexity.
Collapse
|
6
|
Rahul J, Sharma LD. Artificial intelligence-based approach for atrial fibrillation detection using normalised and short-duration time-frequency ECG. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103270] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
|
7
|
Hybrid feature fusion for classification optimization of short ECG segment in IoT based intelligent healthcare system. Neural Comput Appl 2021. [DOI: 10.1007/s00521-021-06693-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
|
8
|
Kareem M, Lei N, Ali A, Ciaccio EJ, Acharya UR, Faust O. A review of patient-led data acquisition for atrial fibrillation detection to prevent stroke. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102818] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|
9
|
A Classification and Prediction Hybrid Model Construction with the IQPSO-SVM Algorithm for Atrial Fibrillation Arrhythmia. SENSORS 2021; 21:s21155222. [PMID: 34372459 PMCID: PMC8348396 DOI: 10.3390/s21155222] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 07/06/2021] [Accepted: 07/06/2021] [Indexed: 02/01/2023]
Abstract
Atrial fibrillation (AF) is the most common cardiovascular disease (CVD), and most existing algorithms are usually designed for the diagnosis (i.e., feature classification) or prediction of AF. Artificial intelligence (AI) algorithms integrate the diagnosis of AF electrocardiogram (ECG) and predict the possibility that AF will occur in the future. In this paper, we utilized the MIT-BIH AF Database (AFDB), which is composed of data from normal people and patients with AF and onset characteristics, and the AFPDB database (i.e., PAF Prediction Challenge Database), which consists of data from patients with Paroxysmal AF (PAF; the records contain the ECG preceding an episode of PAF), and subjects who do not have documented AF. We extracted the respective characteristics of the databases and used them in modeling diagnosis and prediction. In the aspect of model construction, we regarded diagnosis and prediction as two classification problems, adopted the traditional support vector machine (SVM) algorithm, and combined them. The improved quantum particle swarm optimization support vector machine (IQPSO-SVM) algorithm was used to speed the training time. During the verification process, the clinical FZU-FPH database created by Fuzhou University and Fujian Provincial Hospital was used for hybrid model testing. The data were obtained from the Holter monitor of the hospital and encrypted. We proposed an algorithm for transforming the PDF ECG waveform images of hospital examination reports into digital data. For the diagnosis model and prediction model trained using the training set of the AFDB and AFPDB databases, the sensitivity, specificity, and accuracy measures were 99.2% and 99.2%, 99.2% and 93.3%, and 91.7% and 92.5% for the test set of the AFDB and AFPDB databases, respectively. Moreover, the sensitivity, specificity, and accuracy were 94.2%, 79.7%, and 87.0%, respectively, when tested using the FZU-FPH database with 138 samples of the ECG composed of two labels. The composite classification and prediction model using a new water-fall ensemble method had a total accuracy of approximately 91% for the test set of the FZU-FPH database with 80 samples with 120 segments of ECG with three labels.
Collapse
|
10
|
Zhang H, Dong Z, Gao J, Lu P, Wang Z. Automatic screening method for atrial fibrillation based on lossy compression of the electrocardiogram signal. Physiol Meas 2020; 41:075005. [PMID: 32464608 DOI: 10.1088/1361-6579/ab979f] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
OBJECTIVE Compressed sensing (CS) is a low-complexity compression technology that has recently been proposed. It can be applied to long-term electrocardiogram (ECG) monitoring using wearable devices. In this study, an automatic screening method for atrial fibrillation (AF) based on lossy compression of the electrocardiogram signal is proposed. APPROACH The proposed method combines the CS with the convolutional neural network (CNN). The sparse binary sensing matrix is first used to project the raw ECG signal randomly, transforming the raw ECG data from high-dimensional space to low-dimensional space to complete compression, and then using CNN to classify the compressed ECG signal involving AF. Our proposed model is validated on the MIT-BIH atrial fibrillation database. MAIN RESULTS The experimental results show that the model only needs about 1 s to complete the 24 h ECG recording of AF, which is 3.41%, 69.84% and 67.56% less than the time required by AlexNet, VGGNet and GoogLeNet, respectively. Under different compression ratios of 10% to 90%, the maximum and minimum F1 scores reach 96.25% and 88.17%, respectively. SIGNIFICANCE The CS-CNN (compressed sensing convolutional neural network) model has high computational efficiency while ensuring prediction accuracy, and is a promising method for AF screening in wearable application scenarios.
Collapse
Affiliation(s)
- Hongpo Zhang
- State Key Laboratory of Mathematical Engineering and Advanced Computing, Zhengzhou, Henan 450001, People's Republic of China. Cooperative Innovation Center of Internet Healthcare, Zhengzhou University, Zhengzhou, Henan 450003, People's Republic of China
| | | | | | | | | |
Collapse
|
11
|
Hong S, Zhou Y, Shang J, Xiao C, Sun J. Opportunities and challenges of deep learning methods for electrocardiogram data: A systematic review. Comput Biol Med 2020; 122:103801. [PMID: 32658725 DOI: 10.1016/j.compbiomed.2020.103801] [Citation(s) in RCA: 108] [Impact Index Per Article: 27.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2019] [Revised: 04/30/2020] [Accepted: 04/30/2020] [Indexed: 12/15/2022]
Abstract
BACKGROUND The electrocardiogram (ECG) is one of the most commonly used diagnostic tools in medicine and healthcare. Deep learning methods have achieved promising results on predictive healthcare tasks using ECG signals. OBJECTIVE This paper presents a systematic review of deep learning methods for ECG data from both modeling and application perspectives. METHODS We extracted papers that applied deep learning (deep neural network) models to ECG data that were published between January 1st of 2010 and February 29th of 2020 from Google Scholar, PubMed, and the Digital Bibliography & Library Project. We then analyzed each article according to three factors: tasks, models, and data. Finally, we discuss open challenges and unsolved problems in this area. RESULTS The total number of papers extracted was 191. Among these papers, 108 were published after 2019. Different deep learning architectures have been used in various ECG analytics tasks, such as disease detection/classification, annotation/localization, sleep staging, biometric human identification, and denoising. CONCLUSION The number of works on deep learning for ECG data has grown explosively in recent years. Such works have achieved accuracy comparable to that of traditional feature-based approaches and ensembles of multiple approaches can achieve even better results. Specifically, we found that a hybrid architecture of a convolutional neural network and recurrent neural network ensemble using expert features yields the best results. However, there are some new challenges and problems related to interpretability, scalability, and efficiency that must be addressed. Furthermore, it is also worth investigating new applications from the perspectives of datasets and methods. SIGNIFICANCE This paper summarizes existing deep learning research using ECG data from multiple perspectives and highlights existing challenges and problems to identify potential future research directions.
Collapse
Affiliation(s)
- Shenda Hong
- Department of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, USA.
| | - Yuxi Zhou
- School of Electronics Engineering and Computer Science, Peking University, Beijing, China; Key Laboratory of Machine Perception (Ministry of Education), Peking University, Beijing, China.
| | - Junyuan Shang
- School of Electronics Engineering and Computer Science, Peking University, Beijing, China; Key Laboratory of Machine Perception (Ministry of Education), Peking University, Beijing, China.
| | - Cao Xiao
- Analytics Center of Excellence, IQVIA, Cambridge, USA.
| | - Jimeng Sun
- Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, USA.
| |
Collapse
|
12
|
Application of deep learning techniques for heartbeats detection using ECG signals-analysis and review. Comput Biol Med 2020; 120:103726. [DOI: 10.1016/j.compbiomed.2020.103726] [Citation(s) in RCA: 70] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Revised: 03/16/2020] [Accepted: 03/21/2020] [Indexed: 01/03/2023]
|
13
|
Faust O, Ciaccio EJ, Acharya UR. A Review of Atrial Fibrillation Detection Methods as a Service. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:E3093. [PMID: 32365521 PMCID: PMC7246533 DOI: 10.3390/ijerph17093093] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 04/19/2020] [Accepted: 04/24/2020] [Indexed: 12/28/2022]
Abstract
Atrial Fibrillation (AF) is a common heart arrhythmia that often goes undetected, and even if it is detected, managing the condition may be challenging. In this paper, we review how the RR interval and Electrocardiogram (ECG) signals, incorporated into a monitoring system, can be useful to track AF events. Were such an automated system to be implemented, it could be used to help manage AF and thereby reduce patient morbidity and mortality. The main impetus behind the idea of developing a service is that a greater data volume analyzed can lead to better patient outcomes. Based on the literature review, which we present herein, we introduce the methods that can be used to detect AF efficiently and automatically via the RR interval and ECG signals. A cardiovascular disease monitoring service that incorporates one or multiple of these detection methods could extend event observation to all times, and could therefore become useful to establish any AF occurrence. The development of an automated and efficient method that monitors AF in real time would likely become a key component for meeting public health goals regarding the reduction of fatalities caused by the disease. Yet, at present, significant technological and regulatory obstacles remain, which prevent the development of any proposed system. Establishment of the scientific foundation for monitoring is important to provide effective service to patients and healthcare professionals.
Collapse
Affiliation(s)
- Oliver Faust
- Department of Engineering and Mathematics, Sheffield Hallam University, Sheffield S1 1WB, UK
| | - Edward J. Ciaccio
- Department of Medicine—Cardiology, Columbia University, New York, NY 10027, USA;
| | - U. Rajendra Acharya
- Ngee Ann Polytechnic, Electronic & Computer Engineering, Singapore 599489, Singapore;
- Department of Bioinformatics and Medical Engineering, Asia University, Taichung 41354, Taiwan
| |
Collapse
|