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Kabir MM, Mridha M, Rahman A, Hamid MA, Monowar MM. Detection of COVID-19, pneumonia, and tuberculosis from radiographs using AI-driven knowledge distillation. Heliyon 2024; 10:e26801. [PMID: 38444490 PMCID: PMC10912466 DOI: 10.1016/j.heliyon.2024.e26801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Revised: 01/30/2024] [Accepted: 02/20/2024] [Indexed: 03/07/2024] Open
Abstract
Chest radiography is an essential diagnostic tool for respiratory diseases such as COVID-19, pneumonia, and tuberculosis because it accurately depicts the structures of the chest. However, accurate detection of these diseases from radiographs is a complex task that requires the availability of medical imaging equipment and trained personnel. Conventional deep learning models offer a viable automated solution for this task. However, the high complexity of these models often poses a significant obstacle to their practical deployment within automated medical applications, including mobile apps, web apps, and cloud-based platforms. This study addresses and resolves this dilemma by reducing the complexity of neural networks using knowledge distillation techniques (KDT). The proposed technique trains a neural network on an extensive collection of chest X-ray images and propagates the knowledge to a smaller network capable of real-time detection. To create a comprehensive dataset, we have integrated three popular chest radiograph datasets with chest radiographs for COVID-19, pneumonia, and tuberculosis. Our experiments show that this knowledge distillation approach outperforms conventional deep learning methods in terms of computational complexity and performance for real-time respiratory disease detection. Specifically, our system achieves an impressive average accuracy of 0.97, precision of 0.94, and recall of 0.97.
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Affiliation(s)
- Md Mohsin Kabir
- Department of Computer Science & Engineering, Bangladesh University of Business & Technology, Dhaka-1216, Bangladesh
| | - M.F. Mridha
- Department of Computer Science, American International University-Bangladesh, Dhaka-1229, Bangladesh
| | - Ashifur Rahman
- Department of Computer Science & Engineering, Bangladesh University of Business & Technology, Dhaka-1216, Bangladesh
| | - Md. Abdul Hamid
- Department of Information Technology, Faculty of Computing & Information Technology, King Abdulaziz University, Jeddah-21589, Kingdom of Saudi Arabia
| | - Muhammad Mostafa Monowar
- Department of Information Technology, Faculty of Computing & Information Technology, King Abdulaziz University, Jeddah-21589, Kingdom of Saudi Arabia
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Suganuma N, Yoshida S, Takeuchi Y, Nomura YK, Suzuki K. Artificial Intelligence in Quantitative Chest Imaging Analysis for Occupational Lung Disease. Semin Respir Crit Care Med 2023; 44:362-369. [PMID: 37072023 DOI: 10.1055/s-0043-1767760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2023]
Abstract
Occupational lung disease manifests complex radiologic findings which have long been a challenge for computer-assisted diagnosis (CAD). This journey started in the 1970s when texture analysis was developed and applied to diffuse lung disease. Pneumoconiosis appears on radiography as a combination of small opacities, large opacities, and pleural shadows. The International Labor Organization International Classification of Radiograph of Pneumoconioses has been the main tool used to describe pneumoconioses and is an ideal system that can be adapted for CAD using artificial intelligence (AI). AI includes machine learning which utilizes deep learning or an artificial neural network. This in turn includes a convolutional neural network. The tasks of CAD are systematically described as classification, detection, and segmentation of the target lesions. Alex-net, VGG16, and U-Net are among the most common algorithms used in the development of systems for the diagnosis of diffuse lung disease, including occupational lung disease. We describe the long journey in the pursuit of CAD of pneumoconioses including our recent proposal of a new expert system.
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Affiliation(s)
- Narufumi Suganuma
- Department of Environmental Medicine, Kochi Medical School, Nankoku, Kochi, Japan
| | - Shinichi Yoshida
- School of Information, Kochi University of Technology, Nankoku, Kochi, Japan
| | - Yuma Takeuchi
- Department of Environmental Medicine, Kochi Medical School, Nankoku, Kochi, Japan
- Department of Radiology, Kochi Medical School Hospital, Nankoku, Kochi, Japan
| | - Yoshua K Nomura
- Department of Environmental Medicine, Kochi Medical School, Nankoku, Kochi, Japan
| | - Kazuhiro Suzuki
- Department of Radiology, School of Medicine, Juntendo University, Bunkyo City, Tokyo, Japan
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Faust O, De Michele S, Koh JE, Jahmunah V, Lih OS, Kamath AP, Barua PD, Ciaccio EJ, Lewis SK, Green PH, Bhagat G, Acharya UR. Automated analysis of small intestinal lamina propria to distinguish normal, Celiac Disease, and Non-Celiac Duodenitis biopsy images. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 230:107320. [PMID: 36608429 DOI: 10.1016/j.cmpb.2022.107320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2022] [Revised: 12/16/2022] [Accepted: 12/18/2022] [Indexed: 06/17/2023]
Abstract
BACKGROUND AND OBJECTIVE Celiac Disease (CD) is characterized by gluten intolerance in genetically predisposed individuals. High disease prevalence, absence of a cure, and low diagnosis rates make this disease a public health problem. The diagnosis of CD predominantly relies on recognizing characteristic mucosal alterations of the small intestine, such as villous atrophy, crypt hyperplasia, and intraepithelial lymphocytosis. However, these changes are not entirely specific to CD and overlap with Non-Celiac Duodenitis (NCD) due to various etiologies. We investigated whether Artificial Intelligence (AI) models could assist in distinguishing normal, CD, and NCD (and unaffected individuals) based on the characteristics of small intestinal lamina propria (LP). METHODS Our method was developed using a dataset comprising high magnification biopsy images of the duodenal LP compartment of CD patients with different clinical stages of CD, those with NCD, and individuals lacking an intestinal inflammatory disorder (controls). A pre-processing step was used to standardize and enhance the acquired images. RESULTS For the normal controls versus CD use case, a Support Vector Machine (SVM) achieved an Accuracy (ACC) of 98.53%. For a second use case, we investigated the ability of the classification algorithm to differentiate between normal controls and NCD. In this use case, the SVM algorithm with linear kernel outperformed all the tested classifiers by achieving 98.55% ACC. CONCLUSIONS To the best of our knowledge, this is the first study that documents automated differentiation between normal, NCD, and CD biopsy images. These findings are a stepping stone toward automated biopsy image analysis that can significantly benefit patients and healthcare providers.
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Affiliation(s)
| | - Simona De Michele
- Department of Pathology and Cell Biology, Columbia University Irving Medical Center, USA
| | - Joel Ew Koh
- Department of Computer Engineering, Ngee Ann Polytechnic, Singapore, Singapore
| | - V Jahmunah
- Department of Computer Engineering, Ngee Ann Polytechnic, Singapore, Singapore
| | - Oh Shu Lih
- Department of Computer Engineering, Ngee Ann Polytechnic, Singapore, Singapore
| | | | - Prabal Datta Barua
- Cogninet Australia, Sydney, NSW 2010, Australia; School of Management & Enterprise, University of Southern Queensland, Australia; Faculty of Engineering and Information Technology, University of Technology Sydney, Sydney, NSW 2007, Australia
| | - Edward J Ciaccio
- Department of Medicine, Celiac Disease Center, Columbia University Irving Medical Center, USA
| | - Suzanne K Lewis
- Department of Medicine, Celiac Disease Center, Columbia University Irving Medical Center, USA
| | - Peter H Green
- Department of Medicine, Celiac Disease Center, Columbia University Irving Medical Center, USA
| | - Govind Bhagat
- Department of Pathology and Cell Biology, Columbia University Irving Medical Center, USA; Department of Medicine, Celiac Disease Center, Columbia University Irving Medical Center, USA
| | - U Rajendra Acharya
- School of Science and Technology, Singapore University of Social Sciences, 463 Clementi Road, 599494, Singapore; Department of Computer Engineering, Ngee Ann Polytechnic, Singapore, Singapore; Department of Bioinformatics and Medical Engineering, Asia University, Taichung, Taiwan.
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Kareem M, Lei N, Ali A, Ciaccio EJ, Acharya UR, Faust O. A review of patient-led data acquisition for atrial fibrillation detection to prevent stroke. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2021.102818] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Faust O, En Wei Koh J, Jahmunah V, Sabut S, Ciaccio EJ, Majid A, Ali A, Lip GYH, Acharya UR. Fusion of Higher Order Spectra and Texture Extraction Methods for Automated Stroke Severity Classification with MRI Images. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:8059. [PMID: 34360349 PMCID: PMC8345794 DOI: 10.3390/ijerph18158059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Revised: 07/05/2021] [Accepted: 07/23/2021] [Indexed: 11/18/2022]
Abstract
This paper presents a scientific foundation for automated stroke severity classification. We have constructed and assessed a system which extracts diagnostically relevant information from Magnetic Resonance Imaging (MRI) images. The design was based on 267 images that show the brain from individual subjects after stroke. They were labeled as either Lacunar Syndrome (LACS), Partial Anterior Circulation Syndrome (PACS), or Total Anterior Circulation Stroke (TACS). The labels indicate different physiological processes which manifest themselves in distinct image texture. The processing system was tasked with extracting texture information that could be used to classify a brain MRI image from a stroke survivor into either LACS, PACS, or TACS. We analyzed 6475 features that were obtained with Gray-Level Run Length Matrix (GLRLM), Higher Order Spectra (HOS), as well as a combination of Discrete Wavelet Transform (DWT) and Gray-Level Co-occurrence Matrix (GLCM) methods. The resulting features were ranked based on the p-value extracted with the Analysis Of Variance (ANOVA) algorithm. The ranked features were used to train and test four types of Support Vector Machine (SVM) classification algorithms according to the rules of 10-fold cross-validation. We found that SVM with Radial Basis Function (RBF) kernel achieves: Accuracy (ACC) = 93.62%, Specificity (SPE) = 95.91%, Sensitivity (SEN) = 92.44%, and Dice-score = 0.95. These results indicate that computer aided stroke severity diagnosis support is possible. Such systems might lead to progress in stroke diagnosis by enabling healthcare professionals to improve diagnosis and management of stroke patients with the same resources.
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Affiliation(s)
- Oliver Faust
- Department of Engineering and Mathematics, Sheffield Hallam University, Sheffield S1 1WB, UK
| | - Joel En Wei Koh
- School of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore; (J.E.W.K.); (V.J.); (U.R.A.)
| | - Vicnesh Jahmunah
- School of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore; (J.E.W.K.); (V.J.); (U.R.A.)
| | - Sukant Sabut
- School of Electronics Engineering, Kalinga Institute of Industrial Technology, Bhubaneswar, Odisha 751024, India;
| | - Edward J. Ciaccio
- Department of Medicine-Cardiology, Columbia University, New York, NY 10027, USA;
| | - Arshad Majid
- Sheffield Institute for Translational Neuroscience, University of Sheffield, Sheffield S10 2HQ, UK;
| | - Ali Ali
- Sheffield Teaching Hospitals NIHR Biomedical Research Centre, Sheffield S10 2JF, UK;
| | - Gregory Y. H. Lip
- Liverpool Centre for Cardiovascular Science, University of Liverpool and Liverpool Heart & Chest Hospital, Liverpool L69 7TX, UK;
- Aalborg Thrombosis Research Unit, Department of Clinical Medicine, Aalborg University, 9000 Aalborg, Denmark
| | - U. Rajendra Acharya
- School of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore; (J.E.W.K.); (V.J.); (U.R.A.)
- School of Science and Technology, Singapore University of Social Sciences, 463 Clementi Road, Singapore 599494, Singapore
- Department of Bioinformatics and Medical Engineering, Asia University, Taichung 41354, Taiwan
- International Research Organization for Advanced Science and Technology (IROAST), Kumamoto University, Kumamoto 860-8555, Japan
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Dai H, Hwang HG, Tseng VS. Convolutional neural network based automatic screening tool for cardiovascular diseases using different intervals of ECG signals. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 203:106035. [PMID: 33770545 DOI: 10.1016/j.cmpb.2021.106035] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Accepted: 02/28/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND AND OBJECTIVE Automatic screening tools can be applied to detect cardiovascular diseases (CVDs), which are the leading cause of death worldwide. As an effective and non-invasive method, electrocardiogram (ECG) based approaches are widely used to identify CVDs. Hence, this paper proposes a deep convolutional neural network (CNN) to classify five CVDs using standard 12-lead ECG signals. METHODS The Physiobank (PTB) ECG database is used in this study. Firstly, ECG signals are segmented into different intervals (one-second, two-seconds and three-seconds), without any wave detection, and three datasets are obtained. Secondly, as an alternative to any complex preprocessing, durations of raw ECG signals have been considered as input with simple min-max normalization. Lastly, a ten-fold cross-validation method is employed for one-second ECG signals and also tested on other two datasets (two-seconds and three-seconds). RESULTS Comparing to the competing approaches, the proposed CNN acquires the highest performance, having an accuracy, sensitivity, and specificity of 99.59%, 99.04%, and 99.87%, respectively, with one-second ECG signals. The overall accuracy, sensitivity, and specificity obtained are 99.80%, 99.48%, and 99.93%, respectively, using two-seconds of signals with pre-trained proposed models. The accuracy, sensitivity, and specificity of segmented ECG tested by three-seconds signals are 99.84%, 99.52%, and 99.95%, respectively. CONCLUSION The results of this study indicate that the proposed system accomplishes high performance and keeps the characterizations in brief with flexibility at the same time, which means that it has the potential for implementation in a practical, real-time medical environment.
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Affiliation(s)
- Hao Dai
- Institute of Information Management, National Chiao Tung University, Hsinchu, Taiwan.
| | - Hsin-Ginn Hwang
- Institute of Information Management, National Chiao Tung University, Hsinchu, Taiwan
| | - Vincent S Tseng
- Department of Computer Science, National Chiao Tung University, Hsinchu, Taiwan
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Chambara N, Liu SYW, Lo X, Ying M. Diagnostic performance evaluation of different TI-RADS using ultrasound computer-aided diagnosis of thyroid nodules: An experience with adjusted settings. PLoS One 2021; 16:e0245617. [PMID: 33449958 PMCID: PMC7810331 DOI: 10.1371/journal.pone.0245617] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Accepted: 01/04/2021] [Indexed: 01/25/2023] Open
Abstract
BACKGROUND Thyroid cancer diagnosis has evolved to include computer-aided diagnosis (CAD) approaches to overcome the limitations of human ultrasound feature assessment. This study aimed to evaluate the diagnostic performance of a CAD system in thyroid nodule differentiation using varied settings. METHODS Ultrasound images of 205 thyroid nodules from 198 patients were analysed in this retrospective study. AmCAD-UT software was used at default settings and 3 adjusted settings to diagnose the nodules. Six risk-stratification systems in the software were used to classify the thyroid nodules: The American Thyroid Association (ATA), American College of Radiology Thyroid Imaging, Reporting, and Data System (ACR-TIRADS), British Thyroid Association (BTA), European Union (EU-TIRADS), Kwak (2011) and the Korean Society of Thyroid Radiology (KSThR). The diagnostic performance of CAD was determined relative to the histopathology and/or cytology diagnosis of each nodule. RESULTS At the default setting, EU-TIRADS yielded the highest sensitivity, 82.6% and lowest specificity, 42.1% while the ATA-TIRADS yielded the highest specificity, 66.4%. Kwak had the highest AUROC (0.74) which was comparable to that of ACR, ATA, and KSThR TIRADS (0.72, 0.73, and 0.70 respectively). At a hyperechoic foci setting of 3.5 with other settings at median values; ATA had the best-balanced sensitivity, specificity and good AUROC (70.4%; 67.3% and 0.71 respectively). CONCLUSION The default setting achieved the best diagnostic performance with all TIRADS and was best for maximizing the sensitivity of EU-TIRADS. Adjusting the settings by only reducing the sensitivity to echogenic foci may be most helpful for improving specificity with minimal change in sensitivity.
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Affiliation(s)
- Nonhlanhla Chambara
- Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, SAR, China
| | - Shirley Y. W. Liu
- Department of Surgery, Prince of Wales Hospital, Shatin, New Territories, Hong Kong, SAR, China
| | - Xina Lo
- Department of Surgery, North District Hospital, Sheung Shui, New Territories, Hong Kong SAR, China
| | - Michael Ying
- Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, SAR, China
- * E-mail:
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8
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Zhang Y, Wu Q, Chen Y, Wang Y. A Clinical Assessment of an Ultrasound Computer-Aided Diagnosis System in Differentiating Thyroid Nodules With Radiologists of Different Diagnostic Experience. Front Oncol 2020; 10:557169. [PMID: 33042840 PMCID: PMC7518212 DOI: 10.3389/fonc.2020.557169] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Accepted: 08/17/2020] [Indexed: 01/18/2023] Open
Abstract
Introduction This study aimed to assess the diagnostic performance and the added value to radiologists of different levels of a computer-aided diagnosis (CAD) system for the detection of thyroid cancers. Methods 303 patients who underwent thyroidectomy from October 2018 to July 2019 were retrospectively reviewed. The diagnostic performance of the senior radiologist, the junior radiologist, and the CAD system were compared. The added value of the CAD system was assessed and subgroup analyses were performed according to the size of thyroid nodules. Results In total, 186 malignant thyroid nodules, and 179 benign thyroid nodules were included; 168 were papillary thyroid carcinoma (PTC), 7 were medullary thyroid carcinoma (MTC), 11 were follicular carcinoma (FTC), 127 were follicular adenoma (FA) and 52 were nodular goiters. The CAD system showed a comparable specificity as the senior radiologist (86.0% vs. 86.0%, p > 0.99), but a lower sensitivity and a lower area under the receiver operating characteristic (AUROC) curve (sensitivity: 71.5% vs. 95.2%, p < 0.001; AUROC: 0.788 vs. 0.906, p < 0.001). The CAD system improved the diagnostic sensitivities of both the senior and the junior radiologists (97.8% vs. 95.2%, p = 0.063; 88.2% vs. 75.3%, p < 0.001). Conclusion The use of the CAD system using artificial intelligence is a potential tool to distinguish malignant thyroid nodules and is preferable to serve as a second opinion for less experienced radiologists to improve their diagnosis performance.
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Affiliation(s)
- Yichun Zhang
- Department of Ultrasound in Medicine, Shanghai Sixth People's Hospital Affiliated to Shanghai Jiao Tong University, Shanghai, China.,Shanghai Institute of Ultrasound in Medicine, Shanghai, China
| | - Qiong Wu
- Department of Ultrasound in Medicine, Shanghai Sixth People's Hospital Affiliated to Shanghai Jiao Tong University, Shanghai, China.,Shanghai Institute of Ultrasound in Medicine, Shanghai, China
| | - Yutong Chen
- Department of Ultrasound in Medicine, Shanghai Sixth People's Hospital Affiliated to Shanghai Jiao Tong University, Shanghai, China.,Shanghai Institute of Ultrasound in Medicine, Shanghai, China
| | - Yan Wang
- Department of Ultrasound in Medicine, Shanghai Sixth People's Hospital Affiliated to Shanghai Jiao Tong University, Shanghai, China.,Shanghai Institute of Ultrasound in Medicine, Shanghai, China
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Faust O, Ciaccio EJ, Acharya UR. A Review of Atrial Fibrillation Detection Methods as a Service. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:E3093. [PMID: 32365521 PMCID: PMC7246533 DOI: 10.3390/ijerph17093093] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 04/19/2020] [Accepted: 04/24/2020] [Indexed: 12/28/2022]
Abstract
Atrial Fibrillation (AF) is a common heart arrhythmia that often goes undetected, and even if it is detected, managing the condition may be challenging. In this paper, we review how the RR interval and Electrocardiogram (ECG) signals, incorporated into a monitoring system, can be useful to track AF events. Were such an automated system to be implemented, it could be used to help manage AF and thereby reduce patient morbidity and mortality. The main impetus behind the idea of developing a service is that a greater data volume analyzed can lead to better patient outcomes. Based on the literature review, which we present herein, we introduce the methods that can be used to detect AF efficiently and automatically via the RR interval and ECG signals. A cardiovascular disease monitoring service that incorporates one or multiple of these detection methods could extend event observation to all times, and could therefore become useful to establish any AF occurrence. The development of an automated and efficient method that monitors AF in real time would likely become a key component for meeting public health goals regarding the reduction of fatalities caused by the disease. Yet, at present, significant technological and regulatory obstacles remain, which prevent the development of any proposed system. Establishment of the scientific foundation for monitoring is important to provide effective service to patients and healthcare professionals.
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Affiliation(s)
- Oliver Faust
- Department of Engineering and Mathematics, Sheffield Hallam University, Sheffield S1 1WB, UK
| | - Edward J. Ciaccio
- Department of Medicine—Cardiology, Columbia University, New York, NY 10027, USA;
| | - U. Rajendra Acharya
- Ngee Ann Polytechnic, Electronic & Computer Engineering, Singapore 599489, Singapore;
- Department of Bioinformatics and Medical Engineering, Asia University, Taichung 41354, Taiwan
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10
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A morphological image processing method to improve the visibility of pulmonary nodules on chest radiographic images. Biomed Signal Process Control 2020. [DOI: 10.1016/j.bspc.2019.101744] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Fu L, Lu B, Nie B, Peng Z, Liu H, Pi X. Hybrid Network with Attention Mechanism for Detection and Location of Myocardial Infarction Based on 12-Lead Electrocardiogram Signals. SENSORS 2020; 20:s20041020. [PMID: 32074979 PMCID: PMC7071130 DOI: 10.3390/s20041020] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Revised: 01/28/2020] [Accepted: 02/11/2020] [Indexed: 12/13/2022]
Abstract
The electrocardiogram (ECG) is a non-invasive, inexpensive, and effective tool for myocardial infarction (MI) diagnosis. Conventional detection algorithms require solid domain expertise and rely heavily on handcrafted features. Although previous works have studied deep learning methods for extracting features, these methods still neglect the relationships between different leads and the temporal characteristics of ECG signals. To handle the issues, a novel multi-lead attention (MLA) mechanism integrated with convolutional neural network (CNN) and bidirectional gated recurrent unit (BiGRU) framework (MLA-CNN-BiGRU) is therefore proposed to detect and locate MI via 12-lead ECG records. Specifically, the MLA mechanism automatically measures and assigns the weights to different leads according to their contribution. The two-dimensional CNN module exploits the interrelated characteristics between leads and extracts discriminative spatial features. Moreover, the BiGRU module extracts essential temporal features inside each lead. The spatial and temporal features from these two modules are fused together as global features for classification. In experiments, MI location and detection were performed under both intra-patient scheme and inter-patient scheme to test the robustness of the proposed framework. Experimental results indicate that our intelligent framework achieved satisfactory performance and demonstrated vital clinical significance.
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Affiliation(s)
- Lidan Fu
- Chongqing University-University of Cincinnati Joint Co-op Institute, Chongqing University, Chongqing 400030, China; (L.F.); (B.L.)
| | - Binchun Lu
- Chongqing University-University of Cincinnati Joint Co-op Institute, Chongqing University, Chongqing 400030, China; (L.F.); (B.L.)
| | - Bo Nie
- Key Laboratory of Biotechnology Science and Technology, Ministry of Education, College of Bioengineering, Chongqing University, Chongqing 400030, China;
| | - Zhiyun Peng
- State Key Laboratory of Power Transmission Equipment & System Security and New Technology, Chongqing University, Chongqing 400030, China;
| | - Hongying Liu
- Key Laboratory of Biotechnology Science and Technology, Ministry of Education, College of Bioengineering, Chongqing University, Chongqing 400030, China;
- Correspondence: (H.L.); (X.P.)
| | - Xitian Pi
- Key Laboratory of Biotechnology Science and Technology, Ministry of Education, College of Bioengineering, Chongqing University, Chongqing 400030, China;
- Correspondence: (H.L.); (X.P.)
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1D-CADCapsNet: One dimensional deep capsule networks for coronary artery disease detection using ECG signals. Phys Med 2020; 70:39-48. [DOI: 10.1016/j.ejmp.2020.01.007] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/16/2019] [Revised: 11/27/2019] [Accepted: 01/07/2020] [Indexed: 12/14/2022] Open
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Heo J, Lee JJ, Kwon S, Kim B, Hwang SO, Yoon YR. A novel method for detecting ST segment elevation myocardial infarction on a 12-lead electrocardiogram with a three-dimensional display. Biomed Signal Process Control 2020. [DOI: 10.1016/j.bspc.2019.101700] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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14
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Chambara N, Ying M. The Diagnostic Efficiency of Ultrasound Computer-Aided Diagnosis in Differentiating Thyroid Nodules: A Systematic Review and Narrative Synthesis. Cancers (Basel) 2019; 11:E1759. [PMID: 31717365 PMCID: PMC6896127 DOI: 10.3390/cancers11111759] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Revised: 11/03/2019] [Accepted: 11/06/2019] [Indexed: 12/20/2022] Open
Abstract
Computer-aided diagnosis (CAD) techniques have emerged to complement qualitative assessment in the diagnosis of benign and malignant thyroid nodules. The aim of this review was to summarize the current evidence on the diagnostic performance of various ultrasound CAD in characterizing thyroid nodules. PUBMED, EMBASE and Cochrane databases were searched for studies published until August 2019. The Quality Assessment of Studies of Diagnostic Accuracy included in Systematic Review 2 (QUADAS-2) tool was used to assess the methodological quality of the studies. Reported diagnostic performance data were analyzed and discussed. Fourteen studies with 2232 patients and 2675 thyroid nodules met the inclusion criteria. The study quality based on QUADAS-2 assessment was moderate. At best performance, grey scale CAD had a sensitivity of 96.7% while Doppler CAD was 90%. Combined techniques of qualitative grey scale features and Doppler CAD assessment resulted in overall increased sensitivity (92%) and optimal specificity (85.1%). The experience of the CAD user, nodule size and the thyroid malignancy risk stratification system used for interpretation were the main potential factors affecting diagnostic performance outcomes. The diagnostic performance of CAD of thyroid ultrasound is comparable to that of qualitative visual assessment; however, combined techniques have the potential for better optimized diagnostic accuracy.
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Affiliation(s)
| | - Michael Ying
- Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, SAR, China;
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16
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Faust O, Razaghi H, Barika R, Ciaccio EJ, Acharya UR. A review of automated sleep stage scoring based on physiological signals for the new millennia. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2019; 176:81-91. [PMID: 31200914 DOI: 10.1016/j.cmpb.2019.04.032] [Citation(s) in RCA: 68] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Revised: 04/03/2019] [Accepted: 04/29/2019] [Indexed: 06/09/2023]
Abstract
BACKGROUND AND OBJECTIVE Sleep is an important part of our life. That importance is highlighted by the multitude of health problems which result from sleep disorders. Detecting these sleep disorders requires an accurate interpretation of physiological signals. Prerequisite for this interpretation is an understanding of the way in which sleep stage changes manifest themselves in the signal waveform. With that understanding it is possible to build automated sleep stage scoring systems. Apart from their practical relevance for automating sleep disorder diagnosis, these systems provide a good indication of the amount of sleep stage related information communicated by a specific physiological signal. METHODS This article provides a comprehensive review of automated sleep stage scoring systems, which were created since the year 2000. The systems were developed for Electrocardiogram (ECG), Electroencephalogram (EEG), Electrooculogram (EOG), and a combination of signals. RESULTS Our review shows that all of these signals contain information for sleep stage scoring. CONCLUSIONS The result is important, because it allows us to shift our research focus away from information extraction methods to systemic improvements, such as patient comfort, redundancy, safety and cost.
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Affiliation(s)
- Oliver Faust
- Department of Engineering and Mathematics, Sheffield Hallam University, United Kingdom.
| | - Hajar Razaghi
- Department of Engineering and Mathematics, Sheffield Hallam University, United Kingdom
| | - Ragab Barika
- Department of Engineering and Mathematics, Sheffield Hallam University, United Kingdom
| | - Edward J Ciaccio
- Department of Medicine - Cardiology, Columbia University, New York, New York, USA
| | - U Rajendra Acharya
- Department of Electronic & Computer Engineering, Ngee Ann Polytechnic, Singapore; Department of Biomedical Engineering, School of Science and Technology, SIM University, Singapore; Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia
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Barmpoutis P, Dimitropoulos K, Apostolidis A, Grammalidis N. Multi-lead ECG signal analysis for myocardial infarction detection and localization through the mapping of Grassmannian and Euclidean features into a common Hilbert space. Biomed Signal Process Control 2019. [DOI: 10.1016/j.bspc.2019.04.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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18
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Tripathy RK, Paternina MRA, Arrieta JG, Zamora-Méndez A, Naik GR. Automated detection of congestive heart failure from electrocardiogram signal using Stockwell transform and hybrid classification scheme. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2019; 173:53-65. [PMID: 31046996 DOI: 10.1016/j.cmpb.2019.03.008] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2018] [Revised: 02/12/2019] [Accepted: 03/13/2019] [Indexed: 06/09/2023]
Abstract
BACKGROUND AND OBJECTIVE The congestive heart failure (CHF) is a life-threatening cardiac disease which arises when the pumping action of the heart is less than that of the normal case. This paper proposes a novel approach to design a classifier-based system for the automated detection of CHF. METHODS The approach is founded on the use of the Stockwell (S)-transform and frequency division to analyze the time-frequency sub-band matrices stemming from electrocardiogram (ECG) signals. Then, the entropy features are evaluated from the sub-band matrices of ECG. A hybrid classification scheme is adopted taking the sparse representation classifier and the average of the distances from the nearest neighbors into account for the detection of CHF. The proposition is validated using ECG signals from CHF subjects and normal sinus rhythm from public databases. RESULTS The results reveal that the proposed system is successful for the detection of CHF with an accuracy, a sensitivity and a specificity values of 98.78%, 98.48%, and 99.09%, respectively. A comparison with the existing approaches for the detection of CHF is accomplished. CONCLUSIONS The time-frequency entropy features of the ECG signal in the frequency range from 11 Hz to 30 Hz have higher performance for the detection of CHF using a hybrid classifier. The approach can be used for the automated detection of CHF in tele-healthcare monitoring systems.
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Affiliation(s)
- R K Tripathy
- Department of Electrical and Electronics Engineering, BITS-Pilani, Hyderabad Campus, Hyderabad, 500078, India.
| | - Mario R A Paternina
- Department of Electrical Engineering, National Autonomous University of Mexico, Mexico City, 04510, Mexico
| | | | - Alejandro Zamora-Méndez
- Electrical Engineering Faculty, Universidad Michoacana de San Nicolas de Hidalgo, Morelia, Mich. 58030, Mexico
| | - Ganesh R Naik
- MARCS Institute, Western Sydney University Kingswood, NSW - 2747, Australia
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Faust O, Shenfield A, Kareem M, San TR, Fujita H, Acharya UR. Automated detection of atrial fibrillation using long short-term memory network with RR interval signals. Comput Biol Med 2018; 102:327-335. [DOI: 10.1016/j.compbiomed.2018.07.001] [Citation(s) in RCA: 101] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Revised: 07/04/2018] [Accepted: 07/04/2018] [Indexed: 10/28/2022]
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Abstract
OBJECTIVES Deep learning models such as convolutional neural networks (CNNs) have been applied successfully to medical imaging, but biomedical signal analysis has yet to fully benefit from this novel approach. Our survey aims at (i) reviewing deep learning techniques for biosignal analysis in computer- aided diagnosis; and (ii) deriving a taxonomy for organizing the growing number of applications in the field. METHODS A comprehensive literature research was performed using PubMed, Scopus, and ACM. Deep learning models were classified with respect to the (i) origin, (ii) dimension, and (iii) type of the biosignal as input to the deep learning model; (iv) the goal of the application; (v) the size and (vi) type of ground truth data; (vii) the type and (viii) schedule of learning the network; and (ix) the topology of the model. RESULTS Between January 2010 and December 2017, a total 71 papers were published on the topic. The majority (n = 36) of papers are on electrocariography (ECG) signals. Most applications (n = 25) aim at detection of patterns, while only a few (n = 6) at predection of events. Out of 36 ECG-based works, many (n = 17) relate to multi-lead ECG. Other biosignals that have been identified in the survey are electromyography, phonocardiography, photoplethysmography, electrooculography, continuous glucose monitoring, acoustic respiratory signal, blood pressure, and electrodermal activity signal, while ballistocardiography or seismocardiography have yet to be analyzed using deep learning techniques. In supervised and unsupervised applications, CNNs and restricted Boltzmann machines are the most and least frequently used, (n = 34) and (n = 15), respectively. CONCLUSION Our key-code classification of relevant papers was used to cluster the approaches that have been published to date and demonstrated a large variability of research with respect to data, application, and network topology. Future research is expected to focus on the standardization of deep learning architectures and on the optimization of the network parameters to increase performance and robustness. Furthermore, application-driven approaches and updated training data from mobile recordings are needed.
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Affiliation(s)
- Nagarajan Ganapathy
- Peter L. Reichertz Institute for Medical Informatics, University of Braunschweig — Institute of Technology and Hannover Medical School, Braunschweig, Germany
- Indian Institute of Technology Madras, Chennai, India
| | | | - Thomas M. Deserno
- Peter L. Reichertz Institute for Medical Informatics, University of Braunschweig — Institute of Technology and Hannover Medical School, Braunschweig, Germany
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Faust O, Hagiwara Y, Hong TJ, Lih OS, Acharya UR. Deep learning for healthcare applications based on physiological signals: A review. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2018; 161:1-13. [PMID: 29852952 DOI: 10.1016/j.cmpb.2018.04.005] [Citation(s) in RCA: 363] [Impact Index Per Article: 60.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2018] [Revised: 03/23/2018] [Accepted: 04/02/2018] [Indexed: 05/06/2023]
Abstract
BACKGROUND AND OBJECTIVE We have cast the net into the ocean of knowledge to retrieve the latest scientific research on deep learning methods for physiological signals. We found 53 research papers on this topic, published from 01.01.2008 to 31.12.2017. METHODS An initial bibliometric analysis shows that the reviewed papers focused on Electromyogram(EMG), Electroencephalogram(EEG), Electrocardiogram(ECG), and Electrooculogram(EOG). These four categories were used to structure the subsequent content review. RESULTS During the content review, we understood that deep learning performs better for big and varied datasets than classic analysis and machine classification methods. Deep learning algorithms try to develop the model by using all the available input. CONCLUSIONS This review paper depicts the application of various deep learning algorithms used till recently, but in future it will be used for more healthcare areas to improve the quality of diagnosis.
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Affiliation(s)
- Oliver Faust
- Department of Engineering and Mathematics, Sheffield Hallam University, United Kingdom.
| | - Yuki Hagiwara
- Department of Electronic & Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - Tan Jen Hong
- Department of Electronic & Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - Oh Shu Lih
- Department of Electronic & Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - U Rajendra Acharya
- Department of Electronic & Computer Engineering, Ngee Ann Polytechnic, Singapore; Department of Biomedical Engineering, School of Science and Technology, SIM University, Singapore; Department of Biomedical Imaging, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia
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Faust O, Acharya UR, Meiburger KM, Molinari F, Koh JE, Yeong CH, Kongmebhol P, Ng KH. Comparative assessment of texture features for the identification of cancer in ultrasound images: a review. Biocybern Biomed Eng 2018. [DOI: 10.1016/j.bbe.2018.01.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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OH SHULIH, ADAM MUHAMMAD, TAN JENHONG, HAGIWARA YUKI, SUDARSHAN VIDYAK, KOH JOELENWEI, CHUA KUANGCHUA, CHUA KOKPOO, TAN RUSAN, NG EDDIEY. AUTOMATED IDENTIFICATION OF CORONARY ARTERY DISEASE FROM SHORT-TERM 12 LEAD ELECTROCARDIOGRAM SIGNALS BY USING WAVELET PACKET DECOMPOSITION AND COMMON SPATIAL PATTERN TECHNIQUES. J MECH MED BIOL 2017. [DOI: 10.1142/s0219519417400073] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The occlusion of the coronary arteries commonly known as coronary artery disease (CAD) restricts the normal blood circulation required to the heart muscles, thus results in an irreversible myocardial damage or death (myocardial infarction). Clinically, electrocardiogram (ECG) is performed as a primary diagnostic tool to capture these cardiac activities and detect the presence of CAD. However, the use of computer-aided techniques can reduce the visual burden and manual time required for the analysis of complex ECG signals in order to identify the CAD affected subjects from normal ones. Therefore, in this study, a novel computer-aided technique is proposed using 2[Formula: see text]s of 12 lead ECG signals for the identification of CAD affected patients. Each of the 2[Formula: see text]s 12 lead ECG signal beats (3791 normal and 12308 CAD ECG signal beats) are implemented with four levels of wavelet packet decomposition (WPD) to obtain various coefficients. Using the fourth-level coefficients obtained for each lead ECG signal beat, new 2[Formula: see text]s. ECG signal beats are reconstructed. Later, the reconstructed signals are split into two-fold data sets, in which one set is used for acquiring common spatial pattern (CSP) filter and the other for obtaining features vector (vice versa). The obtained features are one by one fed into k-nearest neighbors (KNN) classifier for automated classification. The proposed system yielded maximum average classification results of 99.65% accuracy, 99.64% sensitivity and 99.7% specificity using 10 features. Our proposed algorithm is highly efficient and can be used by the clinicians as an aiding system in their CAD diagnosis, thus, assisting in faster treatment and avoiding the progression of CAD condition.
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Affiliation(s)
- SHU LIH OH
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - MUHAMMAD ADAM
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - JEN HONG TAN
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - YUKI HAGIWARA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - VIDYA K. SUDARSHAN
- Department of Biomedical Engineering, School of Science and Technology, Singapore University of Social Science, 599491, Singapore
- School of Electrical and Computer Engineering, University of Newcastle, Singapore
| | - JOEL EN WEI KOH
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - KUANG CHUA CHUA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - KOK POO CHUA
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - RU SAN TAN
- Department of Cardiology, National Heart Centre, Singapore
| | - EDDIE Y. K. NG
- School of Mechanical and Aerospace Engineering, Nanyang Technological University, Singapore
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Application of deep convolutional neural network for automated detection of myocardial infarction using ECG signals. Inf Sci (N Y) 2017. [DOI: 10.1016/j.ins.2017.06.027] [Citation(s) in RCA: 474] [Impact Index Per Article: 67.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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25
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Amirkhani A, Papageorgiou EI, Mohseni A, Mosavi MR. A review of fuzzy cognitive maps in medicine: Taxonomy, methods, and applications. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2017; 142:129-145. [PMID: 28325441 DOI: 10.1016/j.cmpb.2017.02.021] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2016] [Revised: 02/11/2017] [Accepted: 02/17/2017] [Indexed: 06/06/2023]
Abstract
BACKGROUND AND OBJECTIVE A high percentage of medical errors, committed because of physician's lack of experience, huge volume of data to be analyzed, and inaccessibility to medical records of previous patients, can be reduced using computer-aided techniques. Therefore, designing more efficient medical decision-support systems (MDSSs) to assist physicians in decision-making is crucially important. Through combining the properties of fuzzy logic and neural networks, fuzzy cognitive maps (FCMs) are among the latest, most efficient, and strongest artificial intelligence techniques for modeling complex systems. This review study is conducted to identify different FCM structures used in MDSS designs. The best structure for each medical application can be introduced by studying the properties of FCM structures. METHODS This paper surveys the most important decision- making methods and applications of FCMs in the medical field in recent years. To investigate the efficiency and capability of different FCM models in designing MDSSs, medical applications are categorized into four key areas: decision-making, diagnosis, prediction, and classification. Also, various diagnosis and decision support problems addressed by FCMs in recent years are reviewed with the goal of introducing different types of FCMs and determining their contribution to the improvements made in the fields of medical diagnosis and treatment. RESULTS In this survey, a general trend for future studies in this field is provided by analyzing various FCM structures used for medical purposes, and the results from each category. CONCLUSIONS Due to the unique specifications of FCMs in integrating human knowledge and experience with computer-aided techniques, they are among practical instruments for MDSS design. In the not too distant future, they will have a significant role in medical sciences.
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Affiliation(s)
- Abdollah Amirkhani
- Dept. of Electrical Engineering, Iran University of Science and Technology, Tehran 16846-13114, Iran.
| | - Elpiniki I Papageorgiou
- Dept. of Computer Engineering, Technological Educational Institute of Central Greece, Lamia 35100, Greece.
| | - Akram Mohseni
- Dept. of Electrical Engineering, Iran University of Science and Technology, Tehran 16846-13114, Iran.
| | - Mohammad R Mosavi
- Dept. of Electrical Engineering, Iran University of Science and Technology, Tehran 16846-13114, Iran.
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Sudarshan VK, Acharya UR, Oh SL, Adam M, Tan JH, Chua CK, Chua KP, Tan RS. Automated diagnosis of congestive heart failure using dual tree complex wavelet transform and statistical features extracted from 2s of ECG signals. Comput Biol Med 2017; 83:48-58. [PMID: 28231511 DOI: 10.1016/j.compbiomed.2017.01.019] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2016] [Revised: 01/15/2017] [Accepted: 01/28/2017] [Indexed: 01/24/2023]
Abstract
Identification of alarming features in the electrocardiogram (ECG) signal is extremely significant for the prediction of congestive heart failure (CHF). ECG signal analysis carried out using computer-aided techniques can speed up the diagnosis process and aid in the proper management of CHF patients. Therefore, in this work, dual tree complex wavelets transform (DTCWT)-based methodology is proposed for an automated identification of ECG signals exhibiting CHF from normal. In the experiment, we have performed a DTCWT on ECG segments of 2s duration up to six levels to obtain the coefficients. From these DTCWT coefficients, statistical features are extracted and ranked using Bhattacharyya, entropy, minimum redundancy maximum relevance (mRMR), receiver-operating characteristics (ROC), Wilcoxon, t-test and reliefF methods. Ranked features are subjected to k-nearest neighbor (KNN) and decision tree (DT) classifiers for automated differentiation of CHF and normal ECG signals. We have achieved 99.86% accuracy, 99.78% sensitivity and 99.94% specificity in the identification of CHF affected ECG signals using 45 features. The proposed method is able to detect CHF patients accurately using only 2s of ECG signal length and hence providing sufficient time for the clinicians to further investigate on the severity of CHF and treatments.
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Affiliation(s)
- Vidya K Sudarshan
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore.
| | - U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore; Department of Biomedical Engineering, School of Science and Technology, SIM University, Singapore; Department of Biomedical Engineering, Faculty of Engineering, University of Malaya, Malaysia
| | - Shu Lih Oh
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - Muhammad Adam
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - Jen Hong Tan
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - Chua Kuang Chua
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - Kok Poo Chua
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore
| | - Ru San Tan
- Department of Cardiology, National Heart Centre, Singapore
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Computer aided diagnosis of Coronary Artery Disease, Myocardial Infarction and carotid atherosclerosis using ultrasound images: A review. Phys Med 2017; 33:1-15. [DOI: 10.1016/j.ejmp.2016.12.005] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/25/2016] [Revised: 11/21/2016] [Accepted: 12/04/2016] [Indexed: 02/08/2023] Open
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Acharya UR, Sudarshan VK, Koh JE, Martis RJ, Tan JH, Oh SL, Muhammad A, Hagiwara Y, Mookiah MRK, Chua KP, Chua CK, Tan RS. Application of higher-order spectra for the characterization of Coronary artery disease using electrocardiogram signals. Biomed Signal Process Control 2017. [DOI: 10.1016/j.bspc.2016.07.003] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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29
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lin D, Vasilakos AV, Tang Y, Yao Y. Neural networks for computer-aided diagnosis in medicine: A review. Neurocomputing 2016. [DOI: 10.1016/j.neucom.2016.08.039] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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30
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FAUST OLIVER, YU WENWEI. FORMAL AND MODEL DRIVEN DESIGN OF THE BRIGHT LIGHT THERAPY SYSTEM LUXAMET. J MECH MED BIOL 2016. [DOI: 10.1142/s0219519416500652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Seasonal depression seriously diminishes the quality of life for many patients. To improve their condition, we propose LUXAMET, a bright light therapy system. This system has the potential to relieve patients from some of the symptoms caused by seasonal depression. The system was designed with a formal and model driven design methodology. This methodology enabled us to minimize systemic hazards, like blinding patients with an unhealthy dose of light. This was achieved by controlling race conditions and memory leaks, during design time. We prove that the system specification is deadlock as well as livelock free and there are no invariant violations. These proofs, together with the similarity between specification model and implementation code, make us confident that the implemented system is a reliable tool which can help patients during seasonal depression.
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Affiliation(s)
- OLIVER FAUST
- School of Engineering, University of Aberdeen, Scotland, UK
| | - WENWEI YU
- School of Science and Engineering, Habib University, Karachi, Pakistan
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Automated detection and localization of myocardial infarction using electrocardiogram: a comparative study of different leads. Knowl Based Syst 2016. [DOI: 10.1016/j.knosys.2016.01.040] [Citation(s) in RCA: 152] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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32
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FAUST OLIVER, ACHARYA URAJENDRA, NG EYK, FUJITA HAMIDO. A REVIEW OF ECG-BASED DIAGNOSIS SUPPORT SYSTEMS FOR OBSTRUCTIVE SLEEP APNEA. J MECH MED BIOL 2016. [DOI: 10.1142/s0219519416400042] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Humans need sleep. It is important for physical and psychological recreation. During sleep our consciousness is suspended or least altered. Hence, our ability to avoid or react to disturbances is reduced. These disturbances can come from external sources or from disorders within the body. Obstructive Sleep Apnea (OSA) is such a disorder. It is caused by obstruction of the upper airways which causes periods where the breathing ceases. In many cases, periods of reduced breathing, known as hypopnea, precede OSA events. The medical background of OSA is well understood, but the traditional diagnosis is expensive, as it requires sophisticated measurements and human interpretation of potentially large amounts of physiological data. Electrocardiogram (ECG) measurements have the potential to reduce the cost of OSA diagnosis by simplifying the measurement process. On the down side, detecting OSA events based on ECG data is a complex task which requires highly skilled practitioners. Computer algorithms can help to detect the subtle signal changes which indicate the presence of a disorder. That approach has the following advantages: computers never tire, processing resources are economical and progress, in the form of better algorithms, can be easily disseminated as updates over the internet. Furthermore, Computer-Aided Diagnosis (CAD) reduces intra- and inter-observer variability. In this review, we adopt and support the position that computer based ECG signal interpretation is able to diagnose OSA with a high degree of accuracy.
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Affiliation(s)
- OLIVER FAUST
- Faculty of Arts, Computing, Engineering and Sciences, Sheffield Hallam University, UK
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FAUST OLIVER, NG EYK. COMPUTER AIDED DIAGNOSIS FOR CARDIOVASCULAR DISEASES BASED ON ECG SIGNALS: A SURVEY. J MECH MED BIOL 2016. [DOI: 10.1142/s0219519416400017] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The interpretation of Electroencephalography (ECG) signals is difficult, because even subtle changes in the waveform can indicate a serious heart disease. Furthermore, these waveform changes might not be present all the time. As a consequence, it takes years of training for a medical practitioner to become an expert in ECG-based cardiovascular disease diagnosis. That training is a major investment in a specific skill. Even with expert ability, the signal interpretation takes time. In addition, human interpretation of ECG signals causes interoperator and intraoperator variability. ECG-based Computer-Aided Diagnosis (CAD) holds the promise of improving the diagnosis accuracy and reducing the cost. The same ECG signal will result in the same diagnosis support regardless of time and place. This paper introduces both the techniques used to realize the CAD functionality and the methods used to assess the established functionality. This survey aims to instill trust in CAD of cardiovascular diseases using ECG signals by introducing both a conceptional overview of the system and the necessary assessment methods.
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Affiliation(s)
- OLIVER FAUST
- Faculty of Arts, Computing, Engineering and Sciences, Sheffield Hallam University, Sheffield, UK
| | - E. Y. K. NG
- School of Mechanical & Aerospace Engineering, College of Engineering, Nanyang Technological University, Singapore
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Postema A, Mischi M, de la Rosette J, Wijkstra H. Multiparametric ultrasound in the detection of prostate cancer: a systematic review. World J Urol 2015; 33:1651-9. [PMID: 25761736 PMCID: PMC4617844 DOI: 10.1007/s00345-015-1523-6] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2015] [Accepted: 02/28/2015] [Indexed: 12/20/2022] Open
Abstract
PURPOSE To investigate the advances and clinical results of the different ultrasound modalities and the progress in combining them into multiparametric UltraSound (mpUS). METHODS A systematic literature search on mpUS and the different ultrasound modalities included: greyscale ultrasound, computerized transrectal ultrasound, Doppler and power Doppler techniques, dynamic contrast-enhanced ultrasound and (shear wave) elastography. RESULTS Limited research available on combining ultrasound modalities has presented improvement in diagnostic performance. The data of two studies suggest that even adding a lower performing ultrasound modality to a better performing modality using crude methods can already improve the sensitivity by 13-51 %. The different modalities detect different tumours. No study has tried to combine ultrasound modalities employing a system similar to the PIRADS system used for mpMRI or more advanced classifying algorithms. CONCLUSION Available evidence confirms that combining different ultrasound modalities significantly improves diagnostic performance.
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Affiliation(s)
- Arnoud Postema
- Department of Urology, Academic Medical Center, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands.
| | - Massimo Mischi
- Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, The Netherlands
| | - Jean de la Rosette
- Department of Urology, Academic Medical Center, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands
| | - Hessel Wijkstra
- Department of Urology, Academic Medical Center, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands
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Faust O, Yu W, Rajendra Acharya U. The role of real-time in biomedical science: A meta-analysis on computational complexity, delay and speedup. Comput Biol Med 2015; 58:73-84. [DOI: 10.1016/j.compbiomed.2014.12.024] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2014] [Revised: 12/02/2014] [Accepted: 12/30/2014] [Indexed: 12/29/2022]
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Faust O, Rajendra Acharya U, Ng EYK, Hong TJ, Yu W. Application of infrared thermography in computer aided diagnosis. INFRARED PHYSICS & TECHNOLOGY 2014; 66:160-175. [PMID: 32288546 PMCID: PMC7108233 DOI: 10.1016/j.infrared.2014.06.001] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2014] [Indexed: 05/20/2023]
Abstract
The invention of thermography, in the 1950s, posed a formidable problem to the research community: What is the relationship between disease and heat radiation captured with Infrared (IR) cameras? The research community responded with a continuous effort to find this crucial relationship. This effort was aided by advances in processing techniques, improved sensitivity and spatial resolution of thermal sensors. However, despite this progress fundamental issues with this imaging modality still remain. The main problem is that the link between disease and heat radiation is complex and in many cases even non-linear. Furthermore, the change in heat radiation as well as the change in radiation pattern, which indicate disease, is minute. On a technical level, this poses high requirements on image capturing and processing. On a more abstract level, these problems lead to inter-observer variability and on an even more abstract level they lead to a lack of trust in this imaging modality. In this review, we adopt the position that these problems can only be solved through a strict application of scientific principles and objective performance assessment. Computing machinery is inherently objective; this helps us to apply scientific principles in a transparent way and to assess the performance results. As a consequence, we aim to promote thermography based Computer-Aided Diagnosis (CAD) systems. Another benefit of CAD systems comes from the fact that the diagnostic accuracy is linked to the capability of the computing machinery and, in general, computers become ever more potent. We predict that a pervasive application of computers and networking technology in medicine will help us to overcome the shortcomings of any single imaging modality and this will pave the way for integrated health care systems which maximize the quality of patient care.
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Affiliation(s)
- Oliver Faust
- School of Science and Engineering, Habib University, Karachi 75350, Pakistan
| | - U Rajendra Acharya
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore
| | - E Y K Ng
- School of Mechanical & Production Engineering, Nanyang Technological University, 50 Nanyang Avenue, 639798 Singapore, Singapore
| | - Tan Jen Hong
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore
| | - Wenwei Yu
- Department of Medical System Engineering, Chiba University, Chiba 263-8522, Japan
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37
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Kunhimangalam R, Ovallath S, Joseph PK. A clinical decision support system with an integrated EMR for diagnosis of peripheral neuropathy. J Med Syst 2014; 38:38. [PMID: 24692180 DOI: 10.1007/s10916-014-0038-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2013] [Accepted: 03/13/2014] [Indexed: 11/26/2022]
Abstract
The prevalence of peripheral neuropathy in general population is ever increasing. The diagnosis and classification of peripheral neuropathies is often difficult as it involves careful clinical and electro-diagnostic examination by an expert neurologist. In developing countries a large percentage of the disease remains undiagnosed due to lack of adequate number of experts. In this study a novel clinical decision support system has been developed using a fuzzy expert system. The study was done to provide a solution to the demand of systems that can improve health care by accurate diagnosis in limited time, in the absence of specialists. It employs a graphical user interface and a fuzzy logic controller with rule viewer for identification of the type of peripheral neuropathy. An integrated medical records database is also developed for the storage and retrieval of the data. The system consists of 24 input fields, which includes the clinical values of the diagnostic test and the clinical symptoms. The output field is the disease diagnosis, whether it is Motor (Demyelinating/Axonopathy) neuropathy, sensory (Demyelinating/Axonopathy) neuropathy, mixed type or a normal case. The results obtained were compared with the expert's opinion and the system showed 93.27 % accuracy. The study aims at showing that Fuzzy Expert Systems may prove useful in providing diagnostic and predictive medical opinions. It enables the clinicians to arrive at a better diagnosis as it keeps the expert knowledge in an intelligent system to be used efficiently and effectively.
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Affiliation(s)
- Reeda Kunhimangalam
- National Institute of Technology, NIT Calicut (PO), Kozhikode, Kerala, India, 673601,
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FAUST OLIVER, ANG PENGCHUANALVIN, PUTHANKATTIL SUBHAD, JOSEPH PAULK. DEPRESSION DIAGNOSIS SUPPORT SYSTEM BASED ON EEG SIGNAL ENTROPIES. J MECH MED BIOL 2014. [DOI: 10.1142/s0219519414500353] [Citation(s) in RCA: 64] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Electroencephalography (EEG) is a measure which represents the functional activity of the brain. We show that a detailed analysis of EEG measurements provides highly discriminant features which indicate the mental state of patients with clinical depression. Our feature extraction method revolves around a novel processing structure that combines wavelet packet decomposition (WPD) and non-linear algorithms. WPD was used to select appropriate EEG frequency bands. The resulting signals were processed with the non-linear measures of approximate entropy (ApEn), sample entropy (SampEn), renyi entropy (REN) and bispectral phase entropy ( P h). The features were selected using t-test and only discriminative features were fed to various classifiers, namely probabilistic neural network (PNN), support vector machine (SVM), decision tree (DT), k-nearest neighbor algorithm (k-NN), naive bayes classification (NBC), Gaussian mixture model (GMM) and Fuzzy Sugeno Classifier (FSC). Our classification results show that, with a classification accuracy of 99.5%, the PNN classifier performed better than the rest of classifiers in discriminating between normal and depression EEG signals. Hence, the proposed decision support system can be used to diagnose, and monitor the treatment of patients suffering from depression.
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Affiliation(s)
- OLIVER FAUST
- School of Science and Engineering, Habib University, Karachi, 75350, Pakistan
| | - PENG CHUAN ALVIN ANG
- Department of Electronics and Computer Engineering, Ngee Ann Polytechnic, Singapore 599489, Singapore
| | - SUBHA D. PUTHANKATTIL
- Department of Electrical Engineering, National Institute of Technology, Calicut, India
| | - PAUL K. JOSEPH
- Department of Electrical Engineering, National Institute of Technology, Calicut, India
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McDonald KM, Bryce CL, Graber ML. The patient is in: patient involvement strategies for diagnostic error mitigation. BMJ Qual Saf 2013; 22 Suppl 2:ii33-ii39. [PMID: 23893394 PMCID: PMC3786634 DOI: 10.1136/bmjqs-2012-001623] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Although healthcare quality and patient safety have longstanding international attention, the target of reducing diagnostic errors has only recently gained prominence, even though numerous patients, families and professional caregivers have suffered from diagnostic mishaps for a long time. Similarly, patients have always been involved in their own care to some extent, but only recently have patients sought more opportunities for engagement and participation in healthcare improvements. This paper brings these two promising trends together, analysing strategies for patient involvement in reducing diagnostic errors in an individual's own care, in improving the healthcare delivery system's diagnostic safety, and in contributing to research and policy development on diagnosis-related issues.
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Affiliation(s)
- Kathryn M McDonald
- Stanford University School of Medicine and University of California, School of Public Health, , Berkeley, California, USA
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