Removal of BCG artifacts using a non-Kirchhoffian overcomplete representation

Artifact Reduction in Simultaneous EEG-fMRI: A Systematic Review of Methods and Contemporary Usage

Simultaneous electroencephalography-functional MRI (EEG-fMRI) is a technique that combines temporal (largely from EEG) and spatial (largely from fMRI) indicators of brain dynamics. It is useful for understanding neuronal activity during many different event types, including spontaneous epileptic discharges, the activity of sleep stages, and activity evoked by external stimuli and decision-making tasks. However, EEG recorded during fMRI is subject to imaging, pulse, environment and motion artifact, causing noise many times greater than the neuronal signals of interest. Therefore, artifact removal methods are essential to ensure that artifacts are accurately removed, and EEG of interest is retained. This paper presents a systematic review of methods for artifact reduction in simultaneous EEG-fMRI from literature published since 1998, and an additional systematic review of EEG-fMRI studies published since 2016. The aim of the first review is to distill the literature into clear guidelines for use of simultaneous EEG-fMRI artifact reduction methods, and the aim of the second review is to determine the prevalence of artifact reduction method use in contemporary studies. We find that there are many published artifact reduction techniques available, including hardware, model based, and data-driven methods, but there are few studies published that adequately compare these methods. In contrast, recent EEG-fMRI studies show overwhelming use of just one or two artifact reduction methods based on literature published 15–20 years ago, with newer methods rarely gaining use outside the group that developed them. Surprisingly, almost 15% of EEG-fMRI studies published since 2016 fail to adequately describe the methods of artifact reduction utilized. We recommend minimum standards for reporting artifact reduction techniques in simultaneous EEG-fMRI studies and suggest that more needs to be done to make new artifact reduction techniques more accessible for the researchers and clinicians using simultaneous EEG-fMRI.

Ballistocardiogram Artifact Reduction in Simultaneous EEG-fMRI Using Deep Learning

OBJECTIVE

The concurrent recording of electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) is a technique that has received much attention due to its potential for combined high temporal and spatial resolution. However, the ballistocardiogram (BCG), a large-amplitude artifact caused by cardiac induced movement contaminates the EEG during EEG-fMRI recordings. Removal of BCG in software has generally made use of linear decompositions of the corrupted EEG. This is not ideal as the BCG signal propagates in a manner which is non-linearly dependent on the electrocardiogram (ECG). In this paper, we present a novel method for BCG artifact suppression using recurrent neural networks (RNNs).

METHODS

EEG signals were recovered by training RNNs on the nonlinear mappings between ECG and the BCG corrupted EEG. We evaluated our model's performance against the commonly used Optimal Basis Set (OBS) method at the level of individual subjects, and investigated generalization across subjects.

RESULTS

We show that our algorithm can generate larger average power reduction of the BCG at critical frequencies, while simultaneously improving task relevant EEG based classification.

CONCLUSION

The presented deep learning architecture can be used to reduce BCG related artifacts in EEG-fMRI recordings.

SIGNIFICANCE

We present a deep learning approach that can be used to suppress the BCG artifact in EEG-fMRI without the use of additional hardware. This method may have scope to be combined with current hardware methods, operate in real-time and be used for direct modeling of the BCG.

Removal of BCG artefact from concurrent fMRI-EEG recordings based on EMD and PCA

BACKGROUND

Simultaneous electroencephalography (EEG) and functional magnetic resonance image (fMRI) acquisitions provide better insight into brain dynamics. Some artefacts due to simultaneous acquisition pose a threat to the quality of the data. One such problematic artefact is the ballistocardiogram (BCG) artefact.

METHODS

We developed a hybrid algorithm that combines features of empirical mode decomposition (EMD) with principal component analysis (PCA) to reduce the BCG artefact. The algorithm does not require extra electrocardiogram (ECG) or electrooculogram (EOG) recordings to extract the BCG artefact.

RESULTS

The method was tested with both simulated and real EEG data of 11 participants. From the simulated data, the similarity index between the extracted BCG and the simulated BCG showed the effectiveness of the proposed method in BCG removal. On the other hand, real data were recorded with two conditions, i.e. resting state (eyes closed dataset) and task influenced (event-related potentials (ERPs) dataset). Using qualitative (visual inspection) and quantitative (similarity index, improved normalized power spectrum (INPS) ratio, power spectrum, sample entropy (SE)) evaluation parameters, the assessment results showed that the proposed method can efficiently reduce the BCG artefact while preserving the neuronal signals.

COMPARISON WITH EXISTING METHODS

Compared with conventional methods, namely, average artefact subtraction (AAS), optimal basis set (OBS) and combined independent component analysis and principal component analysis (ICA-PCA), the statistical analyses of the results showed that the proposed method has better performance, and the differences were significant for all quantitative parameters except for the power and sample entropy.

CONCLUSIONS

The proposed method does not require any reference signal, prior information or assumption to extract the BCG artefact. It will be very useful in circumstances where the reference signal is not available.

Removing ballistocardiogram (BCG) artifact from full-scalp EEG acquired inside the MR scanner with Orthogonal Matching Pursuit (OMP)

Ballistocardiogram (BCG) artifact remains a major challenge that renders electroencephalographic (EEG) signals hard to interpret in simultaneous EEG and functional MRI (fMRI) data acquisition. Here, we propose an integrated learning and inference approach that takes advantage of a commercial high-density EEG cap, to estimate the BCG contribution in noisy EEG recordings from inside the MR scanner. To estimate reliably the full-scalp BCG artifacts, a near-optimal subset (20 out of 256) of channels first was identified using a modified recording setup. In subsequent recordings inside the MR scanner, BCG-only signal from this subset of channels was used to generate continuous estimates of the full-scalp BCG artifacts via inference, from which the intended EEG signal was recovered. The reconstruction of the EEG was performed with both a direct subtraction and an optimization scheme. We evaluated the performance on both synthetic and real contaminated recordings, and compared it to the benchmark Optimal Basis Set (OBS) method. In the challenging non-event-related-potential (non-ERP) EEG studies, our reconstruction can yield more than fourteen-fold improvement in reducing the normalized RMS error of EEG signals, compared to OBS.

Ballistocardiogram artifact removal with a reference layer and standard EEG cap

BACKGROUND

In simultaneous EEG-fMRI, the EEG recordings are severely contaminated by ballistocardiogram (BCG) artifacts, which are caused by cardiac pulsations. To reconstruct and remove the BCG artifacts, one promising method is to measure the artifacts in the absence of EEG signal by placing a group of electrodes (BCG electrodes) on a conductive layer (reference layer) insulated from the scalp. However, current BCG reference layer (BRL) methods either use a customized EEG cap composed of electrode pairs, or need to construct the custom reference layer through additional model-building experiments for each EEG-fMRI experiment. These requirements have limited the versatility and efficiency of BRL. The aim of this study is to propose a more practical and efficient BRL method and compare its performance with the most popular BCG removal method, the optimal basis sets (OBS) algorithm.

NEW METHOD

By designing the reference layer as a permanent and reusable cap, the new BRL method is able to be used with a standard EEG cap, and no extra experiments and preparations are needed to use the BRL in an EEG-fMRI experiment.

RESULTS

The BRL method effectively removed the BCG artifacts from both oscillatory and evoked potential scalp recordings and recovered the EEG signal.

COMPARISON WITH EXISTING METHOD

Compared to the OBS, this new BRL method improved the contrast-to-noise ratios of the alpha-wave, visual, and auditory evoked potential signals by 101%, 76%, and 75%, respectively, employing 160 BCG electrodes. Using only 20 BCG electrodes, the BRL improved the EEG signal by 74%/26%/41%, respectively.

CONCLUSION

The proposed method can substantially improve the EEG signal quality compared with traditional methods.

Single-trial analysis of neuroimaging data: inferring neural networks underlying perceptual decision-making in the human brain

Advances in neural signal and image acquisition as well as in multivariate signal processing and machine learning are enabling a richer and more rigorous understanding of the neural basis of human decision-making. Decision-making is essentially characterized behaviorally by the variability of the decision across individual trials--e.g., error and response time distributions. To infer the neural processes that govern decision-making requires identifying neural correlates of such trial-to-trial behavioral variability. In this paper, we review efforts that utilize signal processing and machine learning to enable single-trial analysis of neural signals acquired while subjects perform simple decision-making tasks. Our focus is on neuroimaging data collected noninvasively via electroencephalograpy (EEG) and functional magnetic resonance imaging (fMRI). We review the specific framework for extracting decision-relevant neural components from the neuroimaging data, the goal being to analyze the trial-to-trial variability of the neural signal along these component directions and to relate them to elements of the decision-making process. We review results for perceptual decision-making and discrimination tasks, including paradigms in which EEG variability is used to inform an fMRI analysis. We discuss how single-trial analysis reveals aspects of the underlying decision-making networks that are unobservable using traditional trial-averaging methods.

Removal of ballistocardiogram artifacts using the cyclostationary source extraction method

Ballistocardiogram (BCG) artifact is considered here as the sum of a number of independent cyclostationary components having the same cycle frequency. Our proposed method, called cyclostationary source extraction (CSE), is able to extract these components without much destructive effect on the background electroencephalogram (EEG). It is shown that the proposed method outperforms other methods particularly in preserving the remaining signals. CSE is utilized to remove the BCG artifact from real EEG data recorded inside the magnetic resonance (MR) scanner, i.e., visual evoked potential (VEP). The results are compared to the results of benchmark BCG removal techniques. Analyzing the power spectral density of the cleaned EEG data, it is shown that CSE effectively removes the frequency components corresponding to the BCG artifact. It is also shown that VEPs recorded inside the scanner and processed using the proposed method are more correlated with the VEPs recorded outside the scanner. Moreover, there is no need for electrocardiogram (ECG) data in this method as the cycle frequency of the BCG is directly computed from the contaminated EEG signals.

Signal processing challenges for single-trial analysis of simultaneous EEG/fMRI

A relatively new neuroimaging modality is simultaneous EEG and fMRI. Though such a multi-modal acquisition is attractive given that it can exploit the temporal resolution of EEG and spatial resolution of fMRI, it comes with unique signal processing and pattern classification challenges. In this paper I will review some our work at developing signal processing and pattern recognition for analysis of simultaneous EEG and fMRI, with a focus on those algorithms enabling a single-trial analysis of the neural signal. In general, these algorithms exploit the multivariate nature of the EEG, removing MR induced artifacts and classifying event-related signals that then can be correlated with the BOLD signal to yield specific fMRI activations.

Effect of the static magnetic field of the MR-scanner on ERPs: evaluation of visual, cognitive and motor potentials

OBJECTIVE

This work investigates the influence of the static magnetic field of the MR-scanner on ERPs extracted from simultaneous EEG-fMRI recordings. The quality of the ERPs after BallistoCardioGraphic (BCG) artifact removal, as well as the reproducibility of the waveforms in different environments is investigated.

METHODS

We consider a Detection, a Go-Nogo and a Motor task, eliciting peaks that differ in amplitude, latency and scalp topography, repeated in two situations: outside the scanner room (0T) and inside the MR-scanner but without gradients (3T). The BCG artifact is removed by means of three techniques: the Average Artifact Subtraction (AAS) method, the Optimal Basis Set (OBS) method and the Canonical Correlation Analysis (CCA) approach.

RESULTS

The performance of the three methods depends on the amount of averaged trials. Moreover, differences are found on both amplitude and latency of ERP components recorded in two environments (0T vs 3T).

CONCLUSIONS

We showed that, while ERPs can be extracted from simultaneous EEG-fMRI data at 3T, the static magnetic field might affect the physiological processes under investigation.

SIGNIFICANCE

The reproducibility of the ERPs in different recording environments (0T vs 3T) is a relevant issue that deserves further investigation to clarify the equivalence of cognitive processes in both behavioral and imaging studies.