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Emotional consciousness preserved in patients with disorders of consciousness? Neurol Sci 2019; 40:1409-1418. [PMID: 30941627 PMCID: PMC6579782 DOI: 10.1007/s10072-019-03848-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Accepted: 03/13/2019] [Indexed: 12/23/2022]
Abstract
Increasing evidence from studies of brain responses to subject’s own name (SON) indicates that residual consciousness is preserved in patients with disorders of consciousness (DOC) and that specific network activation might provide evidence of consciousness. However, it remains unclear whether SON is suitable for detection of emotional consciousness; moreover, the particular aspects of brain network organization that are critical for consciousness are unknown. The present study used an innovative approach to explore affective consciousness in patients with DOC during emotional stimuli. EEG data were acquired from 15 patients and 15 healthy volunteers. We analyzed brain potentials and functional network connectivity with a passive emotional paradigm based on graph theoretical methods. Larger N1 or P3a was detected in patients upon exposure to emotional sound, relative to neutral stimuli. Brain topology revealed that emotional sound evoked significantly stronger network linkages in healthy controls; additionally, it evoked several connectivity changes in patients with DOC. In conclusion, emotional consciousness might be partially preserved in patients with DOC; moreover, EEG network patterns could provide new insights into the neural activity of emotional perception in these patients.
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Closed-Loop Systems and In Vitro Neuronal Cultures: Overview and Applications. ADVANCES IN NEUROBIOLOGY 2019; 22:351-387. [DOI: 10.1007/978-3-030-11135-9_15] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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3
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Li J, Liu Q, Zhao J. Self-prior image-guided MRI reconstruction with dictionary learning. Med Phys 2018; 46:517-527. [PMID: 30548875 DOI: 10.1002/mp.13337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2018] [Revised: 10/30/2018] [Accepted: 12/03/2018] [Indexed: 11/11/2022] Open
Abstract
PURPOSE A novel method, named self-prior image-guided MRI reconstruction with dictionary learning (SPIDLE), is developed to improve the performance of MR imaging with high acceleration rates. "self-prior" means that the prior image is obtained from the target image itself and any extra MRI scans are not needed. METHODS The proposed method integrates self-prior image constraint with compressed sensing (CS) and the dictionary learning (DL) technique. The self-prior image is a preliminary result reconstructed using the undersampled k-space measurements of the target image. Therefore, the self-prior image has similar structural features with the target image, and they match each other accurately. CS approach is applied to the residual error of the target image with the self-prior image, because the error image is much sparser than the target image. The split Bregman method is used to solve the proposed approach to promote fast convergence. For multicoil measurements, each coil image is reconstructed individually and the final result is produced as the square root of sum of squares (SOS) of all channel images. RESULTS The performance of the proposed SPIDLE method was inspected using different undersampling schemes and acceleration rates with various types of in vivo MR datasets. Experiments showed that the SPIDLE method is superior to other typical state-of-the-art methods. Specifically, the SPIDLE method produces fewer reconstruction errors, and it is robust to initialization. CONCLUSIONS The proposed SPIDLE method substantially widens the applications of prior image-guided MRI reconstruction, especially for applications that are not suitable to use existing MR scans as prior images. The SPIDLE method obviously improves the reconstruction quality for highly undersampled MRI. It is also promising for reconstruction of dynamic MRI and other imaging modalities, such as CT and CT-MRI multimodality imaging.
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Affiliation(s)
- Jiansen Li
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Qiegen Liu
- Department of Electronic Information Engineering, Nanchang University, Nanchang, 330031, China
| | - Jun Zhao
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China.,SJTU-UIH Research Institute for Advanced Medical Imaging Technology, Shanghai Jiao Tong University, Shanghai, 200240, China.,MED-X Research Institute, Shanghai Jiao Tong University, Shanghai, 200240, China
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Pereira J, Sburlea AI, Müller-Putz GR. EEG patterns of self-paced movement imaginations towards externally-cued and internally-selected targets. Sci Rep 2018; 8:13394. [PMID: 30190543 PMCID: PMC6127278 DOI: 10.1038/s41598-018-31673-2] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Accepted: 08/23/2018] [Indexed: 11/25/2022] Open
Abstract
In this study, we investigate the neurophysiological signature of the interacting processes which lead to a single reach-and-grasp movement imagination (MI). While performing this task, the human healthy participants could either define their movement targets according to an external cue, or through an internal selection process. After defining their target, they could start the MI whenever they wanted. We recorded high density electroencephalographic (EEG) activity and investigated two neural correlates: the event-related potentials (ERPs) associated with the target selection, which reflect the perceptual and cognitive processes prior to the MI, and the movement-related cortical potentials (MRCPs), associated with the planning of the self-paced MI. We found differences in frontal and parietal areas between the late ERP components related to the internally-driven selection and the externally-cued process. Furthermore, we could reliably estimate the MI onset of the self-paced task. Next, we extracted MRCP features around the MI onset to train classifiers of movement vs. rest directly on self-paced MI data. We attained performance significantly higher than chance level for both time-locked and asynchronous classification. These findings contribute to the development of more intuitive brain-computer interfaces in which movement targets are defined internally and the movements are self-paced.
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Affiliation(s)
- Joana Pereira
- Institute of Neural Engineering, Graz University of Technology, Graz, Austria
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Liu YH, Lin LF, Chou CW, Chang Y, Hsiao YT, Hsu WC. Analysis of Electroencephalography Event-Related Desynchronisation and Synchronisation Induced by Lower-Limb Stepping Motor Imagery. J Med Biol Eng 2018. [DOI: 10.1007/s40846-018-0379-9] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Ilunga-Mbuyamba E, Avina-Cervantes JG, Lindner D, Arlt F, Ituna-Yudonago JF, Chalopin C. Patient-specific model-based segmentation of brain tumors in 3D intraoperative ultrasound images. Int J Comput Assist Radiol Surg 2018; 13:331-342. [PMID: 29330658 DOI: 10.1007/s11548-018-1703-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2017] [Accepted: 01/04/2018] [Indexed: 11/27/2022]
Abstract
PURPOSE Intraoperative ultrasound (iUS) imaging is commonly used to support brain tumor operation. The tumor segmentation in the iUS images is a difficult task and still under improvement because of the low signal-to-noise ratio. The success of automatic methods is also limited due to the high noise sensibility. Therefore, an alternative brain tumor segmentation method in 3D-iUS data using a tumor model obtained from magnetic resonance (MR) data for local MR-iUS registration is presented in this paper. The aim is to enhance the visualization of the brain tumor contours in iUS. METHODS A multistep approach is proposed. First, a region of interest (ROI) based on the specific patient tumor model is defined. Second, hyperechogenic structures, mainly tumor tissues, are extracted from the ROI of both modalities by using automatic thresholding techniques. Third, the registration is performed over the extracted binary sub-volumes using a similarity measure based on gradient values, and rigid and affine transformations. Finally, the tumor model is aligned with the 3D-iUS data, and its contours are represented. RESULTS Experiments were successfully conducted on a dataset of 33 patients. The method was evaluated by comparing the tumor segmentation with expert manual delineations using two binary metrics: contour mean distance and Dice index. The proposed segmentation method using local and binary registration was compared with two grayscale-based approaches. The outcomes showed that our approach reached better results in terms of computational time and accuracy than the comparative methods. CONCLUSION The proposed approach requires limited interaction and reduced computation time, making it relevant for intraoperative use. Experimental results and evaluations were performed offline. The developed tool could be useful for brain tumor resection supporting neurosurgeons to improve tumor border visualization in the iUS volumes.
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Affiliation(s)
- Elisee Ilunga-Mbuyamba
- CA Telematics, Engineering Division, Campus Irapuato-Salamanca, University of Guanajuato, Carr. Salamanca-Valle de Santiago km 3.5 + 1.8, Comunidad de Palo Blanco, 36885, Salamanca, Mexico
- Innovation Center Computer Assisted Surgery (ICCAS), University of Leipzig, 04103, Leipzig, Germany
| | - Juan Gabriel Avina-Cervantes
- CA Telematics, Engineering Division, Campus Irapuato-Salamanca, University of Guanajuato, Carr. Salamanca-Valle de Santiago km 3.5 + 1.8, Comunidad de Palo Blanco, 36885, Salamanca, Mexico.
| | - Dirk Lindner
- Department of Neurosurgery, University Hospital Leipzig, 04103, Leipzig, Germany
| | - Felix Arlt
- Department of Neurosurgery, University Hospital Leipzig, 04103, Leipzig, Germany
| | - Jean Fulbert Ituna-Yudonago
- CA Telematics, Engineering Division, Campus Irapuato-Salamanca, University of Guanajuato, Carr. Salamanca-Valle de Santiago km 3.5 + 1.8, Comunidad de Palo Blanco, 36885, Salamanca, Mexico
| | - Claire Chalopin
- Innovation Center Computer Assisted Surgery (ICCAS), University of Leipzig, 04103, Leipzig, Germany
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Cai C, Zeng Y, Zhuang Y, Cai S, Chen L, Ding X, Bao L, Zhong J, Chen Z. Single-Shot ${\text{T}}_{{2}}$ Mapping Through OverLapping-Echo Detachment (OLED) Planar Imaging. IEEE Trans Biomed Eng 2017; 64:2450-2461. [DOI: 10.1109/tbme.2017.2661840] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Campbell-Washburn AE, Tavallaei MA, Pop M, Grant EK, Chubb H, Rhode K, Wright GA. Real-time MRI guidance of cardiac interventions. J Magn Reson Imaging 2017; 46:935-950. [PMID: 28493526 PMCID: PMC5675556 DOI: 10.1002/jmri.25749] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2017] [Accepted: 03/29/2017] [Indexed: 11/09/2022] Open
Abstract
Cardiac magnetic resonance imaging (MRI) is appealing to guide complex cardiac procedures because it is ionizing radiation-free and offers flexible soft-tissue contrast. Interventional cardiac MR promises to improve existing procedures and enable new ones for complex arrhythmias, as well as congenital and structural heart disease. Guiding invasive procedures demands faster image acquisition, reconstruction and analysis, as well as intuitive intraprocedural display of imaging data. Standard cardiac MR techniques such as 3D anatomical imaging, cardiac function and flow, parameter mapping, and late-gadolinium enhancement can be used to gather valuable clinical data at various procedural stages. Rapid intraprocedural image analysis can extract and highlight critical information about interventional targets and outcomes. In some cases, real-time interactive imaging is used to provide a continuous stream of images displayed to interventionalists for dynamic device navigation. Alternatively, devices are navigated relative to a roadmap of major cardiac structures generated through fast segmentation and registration. Interventional devices can be visualized and tracked throughout a procedure with specialized imaging methods. In a clinical setting, advanced imaging must be integrated with other clinical tools and patient data. In order to perform these complex procedures, interventional cardiac MR relies on customized equipment, such as interactive imaging environments, in-room image display, audio communication, hemodynamic monitoring and recording systems, and electroanatomical mapping and ablation systems. Operating in this sophisticated environment requires coordination and planning. This review provides an overview of the imaging technology used in MRI-guided cardiac interventions. Specifically, this review outlines clinical targets, standard image acquisition and analysis tools, and the integration of these tools into clinical workflow. LEVEL OF EVIDENCE 1 Technical Efficacy: Stage 5 J. Magn. Reson. Imaging 2017;46:935-950.
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Affiliation(s)
- Adrienne E Campbell-Washburn
- Laboratory of Imaging Technology, Biochemistry and Biophysics Center, Division of Intramural Research, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland, USA
| | - Mohammad A Tavallaei
- Physical Sciences Platform and Schulich Heart Program, Sunnybrook Research Institute, Toronto, Ontario, Canada
- Medical Biophysics, University of Toronto, Toronto, Ontario, Canada
| | - Mihaela Pop
- Physical Sciences Platform and Schulich Heart Program, Sunnybrook Research Institute, Toronto, Ontario, Canada
- Medical Biophysics, University of Toronto, Toronto, Ontario, Canada
| | - Elena K Grant
- Laboratory of Imaging Technology, Biochemistry and Biophysics Center, Division of Intramural Research, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland, USA
- Department of Cardiology, Children's National Medical Center, Washington, DC, USA
| | - Henry Chubb
- Division of Imaging Sciences and Biomedical Engineering, King's College London, UK
| | - Kawal Rhode
- Division of Imaging Sciences and Biomedical Engineering, King's College London, UK
| | - Graham A Wright
- Physical Sciences Platform and Schulich Heart Program, Sunnybrook Research Institute, Toronto, Ontario, Canada
- Medical Biophysics, University of Toronto, Toronto, Ontario, Canada
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Ferrante E, Paragios N. Slice-to-volume medical image registration: A survey. Med Image Anal 2017; 39:101-123. [DOI: 10.1016/j.media.2017.04.010] [Citation(s) in RCA: 95] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2016] [Revised: 04/08/2017] [Accepted: 04/27/2017] [Indexed: 11/25/2022]
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Xu R, Wright GA. GPU accelerated dynamic respiratory motion model correction for MRI-guided cardiac interventions. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2016; 136:31-43. [PMID: 27686701 DOI: 10.1016/j.cmpb.2016.08.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2016] [Revised: 07/10/2016] [Accepted: 08/09/2016] [Indexed: 06/06/2023]
Abstract
BACKGROUND AND OBJECTIVES The use of pre-procedural magnetic resonance (MR) roadmap images for interventional guidance has limited anatomical accuracy due to intra-procedural respiratory motion of the heart. Therefore, the objective of this study is to explore the use of a rapidly updated dynamic motion model to correct for respiratory motion induced errors during MRI-guided cardiac interventions. The motivation for the proposed technique is to improve the accuracy of MRI guidance by taking advantage of the anatomical context provided by the high resolution prior images and the respiratory motion information present in a series of realtime MR images. METHODS We implemented a GPU accelerated image registration algorithm to derive the respiratory motion information and used the resulting transformation parameters to update an adaptive motion model once every heart cycle. In the subsequent heart cycle, the dynamic motion model could be used to predict the respiratory motion and provide a motion estimate to realign the prior volume with the realtime MR image. This iterative update and prediction process is then continuously repeated. RESULTS The GPU accelerated image registration algorithm could be completed in an average of 176.9 ± 14.0 ms, which is 139× faster than a CPU implementation. Thus, it was feasible to update the dynamic model once every heart cycle. The proposed dynamic model was also able to improve the registration accuracy from 86.0 ± 7.5% to 93.0 ± 3.3% in case of variable breathing patterns, as evaluated by the dice similarity coefficient of the left ventricular border overlap between the prior and realtime images. CONCLUSIONS The feasibility of a dynamic motion correction framework was demonstrated. The resulting improvements may lead to more accurate MRI-guided cardiac interventions in the future.
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Affiliation(s)
- Robert Xu
- Physical Sciences Platform and Schulich Research Centre, Sunnybrook Research Institute, Toronto, ON, M4N 3M5, Canada; Department of Medical Biophysics, University of Toronto, Toronto, ON, M5G 2M9, Canada.
| | - Graham A Wright
- Physical Sciences Platform and Schulich Research Centre, Sunnybrook Research Institute, Toronto, ON, M4N 3M5, Canada; Department of Medical Biophysics, University of Toronto, Toronto, ON, M5G 2M9, Canada
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Pichiorri F, Mrachacz-Kersting N, Molinari M, Kleih S, Kübler A, Mattia D. Brain-computer interface based motor and cognitive rehabilitation after stroke – state of the art, opportunity, and barriers: summary of the BCI Meeting 2016 in Asilomar. BRAIN-COMPUTER INTERFACES 2016. [DOI: 10.1080/2326263x.2016.1246328] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Floriana Pichiorri
- Neuroelectrical Imaging and BCI lab, Fondazione Santa Lucia, Via Ardeatina, 306, 00179, Rome, Italy
| | - Natalie Mrachacz-Kersting
- Center for Sensory-Motor Interaction, Department of Health Science and Technology, Aalborg University, Fredrik Bajers Vej 7D3, 9220, Aalborg Ø, Denmark
| | - Marco Molinari
- Neuroelectrical Imaging and BCI lab, Fondazione Santa Lucia, Via Ardeatina, 306, 00179, Rome, Italy
| | - Sonja Kleih
- Institute of Psychology, University of Würzburg, Marcusstraße 9-11, 97070, Würzburg, Germany
| | - Andrea Kübler
- Institute of Psychology, University of Würzburg, Marcusstraße 9-11, 97070, Würzburg, Germany
| | - Donatella Mattia
- Neuroelectrical Imaging and BCI lab, Fondazione Santa Lucia, Via Ardeatina, 306, 00179, Rome, Italy
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Xu R, Athavale P, Krahn P, Anderson K, Barry J, Biswas L, Ramanan V, Yak N, Pop M, Wright GA. Feasibility Study of Respiratory Motion Modeling Based Correction for MRI-Guided Intracardiac Interventional Procedures. IEEE Trans Biomed Eng 2016; 62:2899-910. [PMID: 26595904 DOI: 10.1109/tbme.2015.2451517] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
GOAL The purpose of this study is to improve the accuracy of interventional catheter guidance during intracardiac procedures. Specifically, the use of preprocedural magnetic resonance roadmap images for interventional guidance has limited anatomical accuracy due to intraprocedural respiratory motion of the heart. Therefore, we propose to build a novel respiratory motion model to compensate for this motion-induced error during magnetic resonance imaging (MRI)-guided procedures. METHODS We acquire 2-D real-time free-breathing images to characterize the respiratory motion, and build a smooth motion model via registration of 3-D prior roadmap images to the real-time images within a novel principal axes frame of reference. The model is subsequently used to correct the interventional catheter positions with respect to the anatomy of the heart. RESULTS We demonstrate that the proposed modeling framework can lead to smoother motion models, and potentially lead to more accurate motion estimates. Specifically, MRI-guided intracardiac ablations were performed in six preclinical animal experiments. Then, from retrospective analysis, the proposed motion modeling technique showed the potential to achieve a 27% improvement in ablation targeting accuracy. CONCLUSION The feasibility of a respiratory motion model-based correction framework has been successfully demonstrated. SIGNIFICANCE The improvement in ablation accuracy may lead to significant improvements in success rate and patient outcomes for MRI-guided intracardiac procedures.
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X-ray and magnetic resonance imaging fusion for cardiac resynchronization therapy. Med Image Anal 2016; 31:98-107. [DOI: 10.1016/j.media.2016.03.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Revised: 12/22/2015] [Accepted: 03/10/2016] [Indexed: 11/23/2022]
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van Gennip Y, Athavale P, Gilles J, Choksi R. A Regularization Approach to Blind Deblurring and Denoising of QR Barcodes. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2015; 24:2864-2873. [PMID: 25974935 DOI: 10.1109/tip.2015.2432675] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
QR bar codes are prototypical images for which part of the image is a priori known (required patterns). Open source bar code readers, such as ZBar, are readily available. We exploit both these facts to provide and assess purely regularization-based methods for blind deblurring of QR bar codes in the presence of noise.
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Aliakbaryhosseinabadi S, Jiang N, Vuckovic A, Dremstrup K, Farina D, Mrachacz-Kersting N. Detection of movement intention from single-trial movement-related cortical potentials using random and non-random paradigms. BRAIN-COMPUTER INTERFACES 2015. [DOI: 10.1080/2326263x.2015.1053301] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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