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For: Cai H, Chen P, Chen J, Cai J, Song Y, Han G. WaveDec: A Wavelet Approach to Identify Both Shared and Individual Patterns of Copy-Number Variations. IEEE Trans Biomed Eng 2019;65:353-364. [PMID: 29346103 DOI: 10.1109/tbme.2017.2769677] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Number Cited by Other Article(s)
1
Chen J, Han G, Xu A, Akutsu T, Cai H. Identifying miRNA-Gene Common and Specific Regulatory Modules for Cancer Subtyping by a High-Order Graph Matching Model. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2023;20:421-431. [PMID: 35320104 DOI: 10.1109/tcbb.2022.3161635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
2
Hui S, Nielsen R. SCONCE2: jointly inferring single cell copy number profiles and tumor evolutionary distances. BMC Bioinformatics 2022;23:348. [PMID: 35986254 PMCID: PMC9392257 DOI: 10.1186/s12859-022-04890-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Accepted: 08/11/2022] [Indexed: 11/24/2022]  Open
3
svBreak: A New Approach for the Detection of Structural Variant Breakpoints Based on Convolutional Neural Network. BIOMED RESEARCH INTERNATIONAL 2022;2022:7196040. [PMID: 35345526 PMCID: PMC8957449 DOI: 10.1155/2022/7196040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Revised: 01/04/2022] [Accepted: 01/27/2022] [Indexed: 12/01/2022]
4
Yuan X, Li J, Bai J, Xi J. A Local Outlier Factor-Based Detection of Copy Number Variations From NGS Data. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2021;18:1811-1820. [PMID: 31880558 DOI: 10.1109/tcbb.2019.2961886] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
5
Zhao HY, Li Q, Tian Y, Chen YH, Alvi HAK, Yuan XG. CIRCNV: Detection of CNVs Based on a Circular Profile of Read Depth from Sequencing Data. BIOLOGY 2021;10:biology10070584. [PMID: 34202028 PMCID: PMC8301091 DOI: 10.3390/biology10070584] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2021] [Revised: 06/10/2021] [Accepted: 06/21/2021] [Indexed: 12/29/2022]
6
Xie K, Tian Y, Yuan X. A Density Peak-Based Method to Detect Copy Number Variations From Next-Generation Sequencing Data. Front Genet 2021;11:632311. [PMID: 33519925 PMCID: PMC7838601 DOI: 10.3389/fgene.2020.632311] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Accepted: 12/21/2020] [Indexed: 11/29/2022]  Open
7
Liu G, Zhang J, Yuan X, Wei C. RKDOSCNV: A Local Kernel Density-Based Approach to the Detection of Copy Number Variations by Using Next-Generation Sequencing Data. Front Genet 2020;11:569227. [PMID: 33329705 PMCID: PMC7673372 DOI: 10.3389/fgene.2020.569227] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Accepted: 09/04/2020] [Indexed: 12/04/2022]  Open
8
Zhao H, Huang T, Li J, Liu G, Yuan X. MFCNV: A New Method to Detect Copy Number Variations From Next-Generation Sequencing Data. Front Genet 2020;11:434. [PMID: 32499814 PMCID: PMC7243272 DOI: 10.3389/fgene.2020.00434] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2020] [Accepted: 04/08/2020] [Indexed: 11/13/2022]  Open
9
Chen J, Han G, Xu A, Cai H. Identification of Multidimensional Regulatory Modules Through Multi-Graph Matching With Network Constraints. IEEE Trans Biomed Eng 2020;67:987-998. [DOI: 10.1109/tbme.2019.2927157] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
10
Cai J, Cai H, Chen J, Yang X. Identifying "Many-to-Many" Relationships between Gene-Expression Data and Drug-Response Data via Sparse Binary Matching. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2020;17:165-176. [PMID: 29994482 DOI: 10.1109/tcbb.2018.2849708] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
11
Chen J, Peng H, Han G, Cai H, Cai J. HOGMMNC: a higher order graph matching with multiple network constraints model for gene–drug regulatory modules identification. Bioinformatics 2018;35:602-610. [DOI: 10.1093/bioinformatics/bty662] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Revised: 05/18/2018] [Accepted: 07/23/2018] [Indexed: 11/14/2022]  Open
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