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El Abbaoui A, Sodoyer D, Elbahhar F. Contactless Heart and Respiration Rates Estimation and Classification of Driver Physiological States Using CW Radar and Temporal Neural Networks. SENSORS (BASEL, SWITZERLAND) 2023; 23:9457. [PMID: 38067830 PMCID: PMC10708560 DOI: 10.3390/s23239457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 10/27/2023] [Accepted: 10/30/2023] [Indexed: 12/18/2023]
Abstract
The measurement and analysis of vital signs are a subject of significant research interest, particularly for monitoring the driver's physiological state, which is of crucial importance for road safety. Various approaches have been proposed using contact techniques to measure vital signs. However, all of these methods are invasive and cumbersome for the driver. This paper proposes using a non-contact sensor based on continuous wave (CW) radar at 24 GHz to measure vital signs. We associate these measurements with distinct temporal neural networks to analyze the signals to detect and extract heart and respiration rates as well as classify the physiological state of the driver. This approach offers robust performance in estimating the exact values of heart and respiration rates and in classifying the driver's physiological state. It is non-invasive and requires no physical contact with the driver, making it particularly practical and safe. The results presented in this paper, derived from the use of a 1D Convolutional Neural Network (1D-CNN), a Temporal Convolutional Network (TCN), a Recurrent Neural Network particularly the Bidirectional Long Short-Term Memory (Bi-LSTM), and a Convolutional Recurrent Neural Network (CRNN). Among these, the CRNN emerged as the most effective Deep Learning approach for vital signal analysis.
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Affiliation(s)
- Amal El Abbaoui
- COSYS-LEOST, University Gustave Eiffel, F-59650 Villeneuve d’Ascq, France;
| | | | - Fouzia Elbahhar
- COSYS-LEOST, University Gustave Eiffel, F-59650 Villeneuve d’Ascq, France;
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Wang Y, Li F, Liu H, Zhang Z, Wang D, Chen S, Wang C, Lan J. Robust muscle force prediction using NMFSEMD denoising and FOS identification. PLoS One 2022; 17:e0272118. [PMID: 35921380 PMCID: PMC9348655 DOI: 10.1371/journal.pone.0272118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Accepted: 07/13/2022] [Indexed: 11/19/2022] Open
Abstract
In this paper, an aliasing noise restraint technique and a system identification-based surface electromyography (sEMG)-force prediction model are proposed to realize a type of robust sEMG and muscle force prediction. For signal denoising, a novel non-negative matrix factorization screening empirical mode decomposition (NMFSEMD) and a fast orthogonal search (FOS)-based muscle force prediction model are developed. First, the NMFSEMD model is used to screen the empirical mode decomposition (EMD) results into the noisy intrinsic mode functions (IMF). Then, the noise matrix is computed using IMF translation and superposition, and the matrix is used as the input of NMF to obtain the denoised IMF. Furthermore, the reconstruction outcome of the NMFSEMD method can be used to estimate the denoised sEMG. Finally, a new sEMG muscle force prediction model, which considers a kind of candidate function in derivative form, is constructed, and a data-training-based linear weighted model is obtained. Extensive experimental results validate the suggested method's correction: after the NMFSEMD denoising of raw sEMG signal, the signal-noise ratio (SNR) can be improved by about 15.0 dB, and the energy percentage (EP) can be greater than 90.0%. Comparing with the muscle force prediction models using the traditional pretreatment and LSSVM, and the NMFSEMD plus LSSVM-based method, the mean square error (MSE) of our approach can be reduced by at least 1.2%.
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Affiliation(s)
- Yuan Wang
- Beijing Engineering Research Center of Industrial Spectrum Imaging, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, China
| | - Fan Li
- National Key Laboratory of Human Factors Engineering, China Astronaut Research and Training Center, Beijing, China
| | - Haoting Liu
- Beijing Engineering Research Center of Industrial Spectrum Imaging, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, China
- School of Electronic and Electrical Engineering, School of Mechanical Engineering, University of Leeds, Leeds, United Kingdom
| | - Zhiqiang Zhang
- School of Electronic and Electrical Engineering, School of Mechanical Engineering, University of Leeds, Leeds, United Kingdom
| | - Duming Wang
- Department of Psychology, Zhejiang Sci-Tech University, Hangzhou, China
| | - Shanguang Chen
- National Key Laboratory of Human Factors Engineering, China Astronaut Research and Training Center, Beijing, China
| | - Chunhui Wang
- National Key Laboratory of Human Factors Engineering, China Astronaut Research and Training Center, Beijing, China
| | - Jinhui Lan
- Beijing Engineering Research Center of Industrial Spectrum Imaging, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, China
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Guo J, Bian Y, Wang W, Dai H, Chen J. Respiration and heart rates measurement using 77GHz FMCW radar with blind source separation algorithm. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2022; 2022:842-845. [PMID: 36085936 DOI: 10.1109/embc48229.2022.9871987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
This paper presents a blind source separation based signal processing method of measuring respiration and heartbeat rates using frequency modulated continues wave (FMCW) radar with working frequency range 77GHz-81GHz. To improve signal quality, complete ensemble empirical mode decomposition with adaptive noise (CEEMDAN) method is used in preprocessing stage to first decompose the phase signal into several intrinsic mode functions (IMFs) and then the phase signal is reconstructed by adding the selected IMFs. The accurate measurement results can be obtained by the proposed method both in separating respiratory and heartbeat signals of one person (the average deviations are 1.1 beat per minute and 6.8 beat per minute respectively), and in separating respiratory signals of two persons.
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Li N, Leng C, Cheng I, Basu A, Jiao L. Dual-Graph Global and Local Concept Factorization for Data Clustering. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2022; PP:803-816. [PMID: 35653444 DOI: 10.1109/tnnls.2022.3177433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Considering a wide range of applications of nonnegative matrix factorization (NMF), many NMF and their variants have been developed. Since previous NMF methods cannot fully describe complex inner global and local manifold structures of the data space and extract complex structural information, we propose a novel NMF method called dual-graph global and local concept factorization (DGLCF). To properly describe the inner manifold structure, DGLCF introduces the global and local structures of the data manifold and the geometric structure of the feature manifold into CF. The global manifold structure makes the model more discriminative, while the two local regularization terms simultaneously preserve the inherent geometry of data and features. Finally, we analyze convergence and the iterative update rules of DGLCF. We illustrate clustering performance by comparing it with latest algorithms on four real-world datasets.
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Prognosis of Tumor Microenvironment in Luminal B-Type Breast Cancer. DISEASE MARKERS 2022; 2022:5621441. [PMID: 35242245 PMCID: PMC8886761 DOI: 10.1155/2022/5621441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 01/12/2022] [Indexed: 12/09/2022]
Abstract
Objective Tumor microenvironment as an important element of malignancy could help predict cancer prognosis and therapeutic response; thus, a prognostic landscape map of the tumor microenvironment in luminal B breast cancers should be developed. Methods The GEO and TCGA databases were employed to retrieve clinical follow-up data and expression profiles of luminal B breast cancer. CIBERSORT was applied to assess the infiltration of the tumor microenvironment of 209 patients and to construct tumor microenvironment-based subtypes of luminal B breast cancer. We also conducted Cox multivariate regression analysis to select features that could be used to develop a microenvironment signature for cancer. Samples were categorized as having low and high TME scores according to the median TME score. The correlations of prognosis and TME score, expression levels of immune factors and genomic variation, and clinical features were further investigated. Results We found that high TME scores were correlated with poor prognosis. The current findings showed that the expressions of multiple immune-related genes, including CXCL9, CXCL10, GZMB, and PDCD1LG2, were upregulated in cancer with high TME scores. The high-risk group showed lower TP53 gene mutation frequency as opposed to that of the low-risk group. For the purpose of developing a TME scoring system, the TME infiltration levels of 209 patients with luminal B breast cancer from TCGA were comprehensively analyzed. Conclusions Our analysis revealed that the TME score was an indicator of patients' response to immune checkpoint modulators and an effective prognostic biomarker. TME scoring improves current immunotherapy on luminal B breast cancer.
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Edanami K, Yao Y, Yen HT, Kurosawa M, Kirimoto T, Hakozaki Y, Matsui T, Sun G. Design and Evaluation of Digital Filters for Non-Contact Measuring of HRV using Medical Radar and Its Application in Bedside Patient Monitoring System. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2021; 2021:6962-6965. [PMID: 34892705 DOI: 10.1109/embc46164.2021.9629643] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
A non-contact bedside monitoring system using medical radar is expected to be applied to clinical fields. Our previous studies have developed a monitoring system based on medical radar for measuring respiratory rate (RR) and heart rate (HR). Heart rate variability (HRV), which is essentially implemented in advanced monitoring system, such as prognosis prediction, is a more challenging biological information than the RR and HR. In this study, we designed a HRV measurement filter and proposed a method to evaluate the optimal cardiac signal extraction filter for HRV measurement. Because the cardiac component in the radar signal is much smaller than the respiratory component, it is necessary to extract the cardiac element from the radar output signal using digital filters. It depends on the characteristics of the filter whether the HRV information is kept in the extracted cardiac signal or not. A cardiac signal extraction filter that is not distorted in the time domain and does not miss the cardiac component must be adopted. Therefore, we focused on evaluating the interval between the R-peak of the electrocardiogram (ECG) and the radar-cardio peak of the cardiac signal measured by radar (R-radar interval). This is based on the fact that the time between heart depolarization and ventricular contraction is measured as the R-radar interval. A band-pass filter (BPF) with several bandwidths and a nonlinear filter, locally projective adaptive signal separation (LoPASS), were analyzed and compared. The optimal filter was quantitatively evaluated by analyzing the distribution and standard deviation of the R-radar intervals. The performance of this monitoring system was evaluated in elderly patient at the Yokohama Hospital, Japan.
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Ren C, Wu C, Wang N, Lian C, Yang C. Clonal Architectures Predict Clinical Outcome in Gastric Adenocarcinoma Based on Genomic Variation, Tumor Evolution, and Heterogeneity. Cell Transplant 2021; 30:963689721989606. [PMID: 33900127 PMCID: PMC8085378 DOI: 10.1177/0963689721989606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
Abstract
Stomach adenocarcinoma (STAD) is a highly heterogeneous disease. Due to the lack of effective molecular markers and personalized treatment, the prognosis of gastric cancer patients is still very poor. The ABSOLUTE algorithm and cancer cell fraction were used to evaluate the clonal and subclonal status of 349 TCGA (The Cancer Genome Cancer Atlas)-STAD patients. Non-negative matrix factorization was used to identify the mutation characteristics of the samples. Univariate Cox regression analysis was used to determine the relationship between clonal/subclonal events and prognosis, and the Spearman correlation was used to evaluate the relationship of clonal/subclonal events to tumor mutation burden (TMB) and neoantigens. The evolution pattern of STAD demonstrated great tumor heterogeneity. TP53, USH2A, and GLI3 appeared earliest in STAD and may drive STAD. CTNNB1, LRP1B, and ERBB4 appeared the latest in STAD, and may be related to STAD’s progress. Univariate Cox regression analysis identified four early genes, eight intermediate genes, and seven late genes significantly associated with overall survival. The number of subclonal events in the T stage was significantly different. The N stage, gender, and histological type were significantly different for clonal events, and there was a significant correlation between clonal/subclonal events and TMB/neoantigens. Our results highlight the importance of systematic evaluation of evolutionary models in the clinical management of STAD and personalized gastric cancer treatment.
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Affiliation(s)
- Chenxia Ren
- Central Laboratory, 74652Changzhi Medical College, Shanxi Province, China
| | - Cuiling Wu
- Faculty of Basic Medicine, 74652Changzhi Medical College, Shanxi Province, China
| | - Niuniu Wang
- Central Laboratory, 74652Changzhi Medical College, Shanxi Province, China
| | - Changhong Lian
- Department of General Surgery, 117875Heping Hospital Affiliated to Changzhi Medical College, Shanxi Province, China
| | - Changqing Yang
- Department of Gastroenterology, 117875Heping Hospital Affiliated to Changzhi Medical College, Shanxi Province, China
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Gu Y, Li X, Chen S, Li X. AOAR: an automatic ocular artifact removal approach for multi-channel electroencephalogram data based on non-negative matrix factorization and empirical mode decomposition. J Neural Eng 2021; 18:056012. [PMID: 33821810 DOI: 10.1088/1741-2552/abede0] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE Electroencephalogram (EEG) signals suffer inevitable interference from artifacts during the acquisition process. These artifacts make the analysis and interpretation of EEG data difficult. A major source of artifacts in EEGs is ocular activity. Therefore, it is important to remove ocular artifacts before further processing the EEG data. APPROACH In this study, an automatic ocular artifact removal (AOAR) method for EEG signals is proposed based on non-negative matrix factorization (NMF) and empirical mode decomposition (EMD). First, the amplitude of EEG data was normalized in order to ensure its non-negativity. Then, the normalized EEG data were decomposed into a set of components using NMF. The components containing ocular artifacts were extracted automatically through the fractal dimension. Subsequently, the temporal activities of these components were adaptively decomposed into some intrinsic mode functions (IMFs) by EMD. The IMFs corresponding to ocular artifacts were removed. Finally, the de-noised EEG data were reconstructed. MAIN RESULTS The proposed method was tested against seven other methods. In order to assess the effectiveness and reliability of the AOAR method in processing EEG data, experiments on ocular artifact removal were performed using simulated EEG data. Experimental results indicated that the proposed method was superior to the other methods in terms of root mean square error, signal-to-noise ratio (SNR) and correlation coefficient, especially in cases with a lower SNR. To further evaluate the potential applications of the proposed method in real life, the proposed method and others were applied to preprocess real EEG data recorded from children with and without attention-deficit/hyperactivity disorder (ADHD). After artifact rejection, the event-related potential feature was extracted for classification. The AOAR method was best at distinguishing the children with ADHD from the others. SIGNIFICANCE These results indicate that the proposed AOAR method has excellent prospects for removing ocular artifacts from EEG data.
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Affiliation(s)
- Yue Gu
- Key Laboratory of Computer Vision and System (Ministry of Education), School of Computer Science and Engineering, Tianjin University of Technology, Tianjin 300384, People's Republic of China. Engineering Research Center of Learning-Based Intelligent system, Ministry of Education, Tianjin 300384, People's Republic of China
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Chen Y, Zhao J. Identification of an Immune Gene Signature Based on Tumor Microenvironment Characteristics in Colon Adenocarcinoma. Cell Transplant 2021; 30:9636897211001314. [PMID: 33787354 PMCID: PMC8020110 DOI: 10.1177/09636897211001314] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Abstract
Tumor microenvironment (TME) changes are related to the occurrence and development of colon adenocarcinoma (COAD). This study aimed to analyze the characteristics of the immune microenvironment in CC, as well as the microenvironment's relationship with the clinical features of CC. Based on The Cancer Genome Atlas (TCGA) and GSE39582 cohorts, the scores of 22 tumor infiltrating lymphocytes (TILs) were calculated using CIBERSORT. ConsensusClusterPlus was used for unsupervised clustering. Three TME subtypes (TMEC1, TMEC2, and TME3) were identified based on TIL scores. TMEC2 was associated with the worst prognosis. Random forest, k-means clustering, and principal component analysis were used to construct the TME score risk signature. The median TME score was used to divide the samples into high- and low-risk groups. The prognoses of the patients with high TME scores were worse than those of the patients with low TME scores. A high TME score was an independent prognostic risk factor for patients with colon cancer. The Gene Set Enrichment Analysis (GSEA) results showed that those with high TME scores were enriched in FOCAL_ADHESION, ECM_RECEPTOR_INTERACTION, and PATHWAYS_IN_CANCER. Our findings will provide a new strategy for immunotherapy in patients with CC.
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Affiliation(s)
- Ying Chen
- Department of Medical Oncology, the First Hospital of China Medical University, Shenyang, China
- Key Laboratory of Anticancer Drugs and Biotherapy of Liaoning
Province, the First Hospital of China Medical University, Shenyang, China
| | - Jia Zhao
- Department of Medical Oncology, the First Hospital of China Medical University, Shenyang, China
- Key Laboratory of Anticancer Drugs and Biotherapy of Liaoning
Province, the First Hospital of China Medical University, Shenyang, China
- Jia Zhao, Department of Medical Oncology,
the First Hospital of China Medical University, Shenyang, China.
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Ma M, Chen Y, Chong X, Jiang F, Gao J, Shen L, Zhang C. Integrative analysis of genomic, epigenomic and transcriptomic data identified molecular subtypes of esophageal carcinoma. Aging (Albany NY) 2021; 13:6999-7019. [PMID: 33638948 PMCID: PMC7993659 DOI: 10.18632/aging.202556] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Accepted: 12/29/2020] [Indexed: 12/16/2022]
Abstract
Esophageal cancer (EC) involves many genomic, epigenetic and transcriptomic disorders, which play key roles in the heterogeneous progression of cancer. However, the study of EC with multi-omics has not been conducted. This study identified a high consistency between DNA copy number variations and abnormal methylations in EC by analyzing genomics, epigenetics and transcriptomics data and investigating mutual correlations of DNA copy number variation, methylation and gene expressions, and stratified copy number variation genes (CNV-Gs) and methylation genes (MET-Gs). The methylation, CNVs and expression profiles of CNV-Gs and MET-Gs were analyzed by consistent clustering using iCluster integration, here, we determined three subtypes (iC1, iC2, iC3) with different molecular traits, prognostic characteristics and tumor immune microenvironment features. We also identified 4 prognostic genes (CLDN3, FAM221A, GDF15 and YBX2) differentially expressed in the three subtypes, and could therefore be used as representative biomarkers for the three subtypes of EC. In conclusion, by performing comprehensive analysis on genomic, epigenetic and transcriptomic regulations, the current study provided new insights into the multilayer molecular and pathological traits of EC, and contributed to the precision medication for EC patients.
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Affiliation(s)
- Mingyang Ma
- Department of Gastrointestinal Oncology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education/Beijing), Peking University Cancer Hospital and Institute, Beijing 100142, China
| | - Yang Chen
- Department of Gastrointestinal Oncology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education/Beijing), Peking University Cancer Hospital and Institute, Beijing 100142, China
| | - Xiaoyi Chong
- Department of Gastrointestinal Oncology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education/Beijing), Peking University Cancer Hospital and Institute, Beijing 100142, China
| | - Fangli Jiang
- Department of Gastrointestinal Oncology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education/Beijing), Peking University Cancer Hospital and Institute, Beijing 100142, China
| | - Jing Gao
- National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital and Shenzhen Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Shenzhen 518116, China
| | - Lin Shen
- Department of Gastrointestinal Oncology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education/Beijing), Peking University Cancer Hospital and Institute, Beijing 100142, China
| | - Cheng Zhang
- Department of Gastrointestinal Oncology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education/Beijing), Peking University Cancer Hospital and Institute, Beijing 100142, China
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Song Y, Yang K, Sun T, Tang R. Development and validation of prognostic markers in sarcomas base on a multi-omics analysis. BMC Med Genomics 2021; 14:31. [PMID: 33509178 PMCID: PMC7841904 DOI: 10.1186/s12920-021-00876-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 01/13/2021] [Indexed: 12/13/2022] Open
Abstract
BACKGROUND In sarcomas, the DNA copy number and DNA methylation exhibit genomic aberrations. Transcriptome imbalances play a driving role in the heterogeneous progression of sarcomas. However, it is still unclear whether abnormalities of DNA copy numbers are systematically related to epigenetic DNA methylation, thus, a comprehensive analysis of sarcoma occurrence and development from the perspective of epigenetic and genomics is required. METHODS RNASeq, copy number variation (CNV), methylation data, clinical follow-up information were obtained from The Cancer Genome Atlas (TCGA) and GEO database. The association between methylation and CNV was analyzed to further identify methylation-related genes (MET-Gs) and CNV abnormality-related genes (CNV-Gs). Subsequently DNA copy number, methylation, and gene expression data associated with the MET-Gs and CNV-Gs were integrated to determine molecular subtypes and clinical and molecular characteristics of molecular subtypes. Finally, key biomarkers were determined and validated in independent validation sets. RESULTS A total of 5354 CNV-Gs and 4042 MET-Gs were screened and showed a high degree of consistency. Four molecular subtypes (iC1, iC2, iC3, and iC4) with different prognostic significances were identified by multiomics cluster analysis, specifically, iC2 had the worst prognosis and iC4 indicated an immune-enhancing state. Three potential prognostic markers (ENO1, ACVRL1 and APBB1IP) were determined after comparing the molecular characteristics of the four molecular subtypes. The expression of ENO1 gene was significantly correlated with CNV, and was noticeably higher in iC2 subtype with the worst prognosis than any other subtypes. The expressions of ACVRL1 and APBB1IP were negatively correlated with methylation, and were high-expressed in the iC4 subtype with the most favorable prognosis. In addition, the number of silent/nonsilent mutations and neoantigens in iC2 subtype were significantly more than those in iC1/iC3/iC4 subtype, and the same trend was also observed in CNV Gain/Loss. CONCLUSION The current comprehensive analysis of genomic and epigenomic regulation provides new insights into multilayered pathobiology of sarcomas. Four molecular subtypes and three prognostic markers developed in this study improve the current understanding of the molecular mechanisms underlying sarcoma.
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Affiliation(s)
- Yongchun Song
- Department of Oncology Surgery, The First Affiliated Hospital of Xi'an Jiaotong University, 277 West Yanta Road, Xi'an, 710061, Shaanxi, China
| | - Kui Yang
- Department of General Surgery, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, 710061, Shaanxi, China
| | - Tuanhe Sun
- Department of Oncology Surgery, The First Affiliated Hospital of Xi'an Jiaotong University, 277 West Yanta Road, Xi'an, 710061, Shaanxi, China
| | - Ruixiang Tang
- Department of Oncology Surgery, The First Affiliated Hospital of Xi'an Jiaotong University, 277 West Yanta Road, Xi'an, 710061, Shaanxi, China.
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Wang G, Wang D, Sun M, Liu X, Yang Q. Identification of prognostic and immune-related gene signatures in the tumor microenvironment of endometrial cancer. Int Immunopharmacol 2020; 88:106931. [PMID: 32889237 DOI: 10.1016/j.intimp.2020.106931] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Revised: 07/23/2020] [Accepted: 08/20/2020] [Indexed: 12/13/2022]
Abstract
Uterine corpus endometrial cancer (UCEC) is one of the most prevalent female malignancies in clinical practice. Due to the lack of effective biomarkers and personalized treatments, the prognosis of advanced-stage EC remains unfavorable. Modulation of the immune microenvironment is closely related to the onset and development of endometrial cancer. In the present study, we attempt to systematically analyze the characteristics of the immune microenvironment of endometrial cancer and investigate its association with clinical features by applying bioinformatics. RNA-Seq in TCGA (The Cancer Genome Atlas) and clinical follow-up information of patents were used for analysis. The Tumor Microenvironment (TME) score infiltration patterns of 523 endometrial cancer patients were evaluated using CIBERSORT. Random forest, multivariable cox analysis were used to build the TME score. Fisher's exact test was used to compare the genes that show significant differences in the frequency of mutations between groups. Two TME phenotypes were defined. There is a significant relationship between the TME score and grade. High TME score samples are highly expressed in immune activation, TGF pathway activation and immune checkpoint genes, and low TME score samples have high frequency mutations of PTEN, CSE1L and ITGB3. Therefore, describing the comprehensive landscape of UCEC's TME characteristics may help explain patients' response to immunotherapy and provide new strategies for cancer treatment.
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Affiliation(s)
- Guangwei Wang
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, Shenyang 110004, China
| | - Dandan Wang
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, Shenyang 110004, China
| | - Meige Sun
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, Shenyang 110004, China
| | - Xiaofei Liu
- Department of Obstetrics and Gynecology, Shenyang Women's and Children's Hospital, Shenyang 110014, China
| | - Qing Yang
- Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, Shenyang 110004, China.
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Adaptive Separation of Respiratory and Heartbeat Signals among Multiple People Based on Empirical Wavelet Transform Using UWB Radar. SENSORS 2020; 20:s20174913. [PMID: 32878041 PMCID: PMC7506741 DOI: 10.3390/s20174913] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 08/21/2020] [Accepted: 08/28/2020] [Indexed: 11/17/2022]
Abstract
The non-contact monitoring of vital signs by radar has great prospects in clinical monitoring. However, the accuracy of separated respiratory and heartbeat signals has not satisfied the clinical limits of agreement. This paper presents a study for automated separation of respiratory and heartbeat signals based on empirical wavelet transform (EWT) for multiple people. The initial boundary of the EWT was set according to the limited prior information of vital signs. Using the initial boundary, empirical wavelets with a tight frame were constructed to adaptively separate the respiratory signal, the heartbeat signal and interference due to unconscious body movement. To verify the validity of the proposed method, the vital signs of three volunteers were simultaneously measured by a stepped-frequency continuous wave ultra-wideband (UWB) radar and contact physiological sensors. Compared with the vital signs from contact sensors, the proposed method can separate the respiratory and heartbeat signals among multiple people and obtain the precise rate that satisfies clinical monitoring requirements using a UWB radar. The detection errors of respiratory and heartbeat rates by the proposed method were within ±0.3 bpm and ±2 bpm, respectively, which are much smaller than those obtained by the bandpass filtering, empirical mode decomposition (EMD) and wavelet transform (WT) methods. The proposed method is unsupervised and does not require reference signals. Moreover, the proposed method can obtain accurate respiratory and heartbeat signal rates even when the persons unconsciously move their bodies.
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Zhong Q, Fan J, Chu H, Pang M, Li J, Fan Y, Liu P, Wu C, Qiao J, Li R, Hang J. Integrative analysis of genomic and epigenetic regulation of endometrial cancer. Aging (Albany NY) 2020; 12:9260-9274. [PMID: 32412912 PMCID: PMC7288931 DOI: 10.18632/aging.103202] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Accepted: 04/17/2020] [Indexed: 11/25/2022]
Abstract
Endometrial carcinomas (EC) are characterized by high DNA copy numbers and DNA methylation aberrations. In this study, we sought to comprehensively explore the effect of these two factors on development and progression of EC by analyzing integrated genomic and epigenetic analysis to. We found high DNA copy number and DNA methylation abnormalities in EC, with 6308 copy-number variation genes (CNV-G) and 4376 methylation genes (MET-G). We used these CNV-G and MET-G to subcategorize the samples for prognostic analysis, and identified three molecular subtypes (iC1, iC2, iC3). Moreover, the subtypes exhibited different tumor immune microenvironment characteristics. A further analysis of their molecular characteristics revealed three potential prognostic markers (KIAA1324, nonexpresser of pathogenesis-related genes1 (NPR1) and idiopathic hypogonadotropic hypogonadism (IHH)). Notably, all three markers showed distinct CNV, DNA methylation, and gene expression profiles. Analysis of mutations among the three subtypes revealed that iC2 had fewer mutations than the other subtypes. Conversely, iC2 showed significantly higher CNV levels than other subtypes. This comprehensive analysis of genomic and epigenetic profiles identified three prognostic markers, therefore, provides new insights into the multi-layered pathology of EC. These can be utilized for accurate treatment of EC patients.
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Affiliation(s)
- Qihang Zhong
- Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing 100191, China.,Institute of Systems Biomedicine, School of Basic Medical Sciences, Peking University Health Science Center, Peking University, Beijing 100191, China
| | - Junpeng Fan
- Department of Obstetrics and Gynecology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430000, China
| | - Honglei Chu
- Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing 100191, China
| | - Mujia Pang
- Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing 100191, China
| | - Junsheng Li
- Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing 100191, China.,Beijing Key Laboratory of Reproductive Endocrinology and Assisted Reproduction, Beijing 100191, China.,Key Laboratory of Assisted Reproduction, Ministry of Education, Beijing 100191, China
| | - Yong Fan
- Key Laboratory for Major Obstetric Diseases of Guangdong Province, The Third Affiliated Hospital of Guangzhou Medical University, Guangzhou 510150, China
| | - Ping Liu
- Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing 100191, China.,Beijing Key Laboratory of Reproductive Endocrinology and Assisted Reproduction, Beijing 100191, China.,Key Laboratory of Assisted Reproduction, Ministry of Education, Beijing 100191, China
| | - Congying Wu
- Institute of Systems Biomedicine, School of Basic Medical Sciences, Peking University Health Science Center, Peking University, Beijing 100191, China
| | - Jie Qiao
- Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing 100191, China.,Beijing Key Laboratory of Reproductive Endocrinology and Assisted Reproduction, Beijing 100191, China.,Key Laboratory of Assisted Reproduction, Ministry of Education, Beijing 100191, China.,Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China
| | - Rong Li
- Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing 100191, China.,Beijing Key Laboratory of Reproductive Endocrinology and Assisted Reproduction, Beijing 100191, China.,Key Laboratory of Assisted Reproduction, Ministry of Education, Beijing 100191, China
| | - Jing Hang
- Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing 100191, China.,Beijing Key Laboratory of Reproductive Endocrinology and Assisted Reproduction, Beijing 100191, China.,Key Laboratory of Assisted Reproduction, Ministry of Education, Beijing 100191, China
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16
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Malešević N, Petrović V, Belić M, Antfolk C, Mihajlović V, Janković M. Contactless Real-Time Heartbeat Detection via 24 GHz Continuous-Wave Doppler Radar Using Artificial Neural Networks. SENSORS (BASEL, SWITZERLAND) 2020; 20:E2351. [PMID: 32326190 PMCID: PMC7219229 DOI: 10.3390/s20082351] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Revised: 04/16/2020] [Accepted: 04/19/2020] [Indexed: 11/22/2022]
Abstract
The measurement of human vital signs is a highly important task in a variety of environments and applications. Most notably, the electrocardiogram (ECG) is a versatile signal that could indicate various physical and psychological conditions, from signs of life to complex mental states. The measurement of the ECG relies on electrodes attached to the skin to acquire the electrical activity of the heart, which imposes certain limitations. Recently, due to the advancement of wireless technology, it has become possible to pick up heart activity in a contactless manner. Among the possible ways to wirelessly obtain information related to heart activity, methods based on mm-wave radars proved to be the most accurate in detecting the small mechanical oscillations of the human chest resulting from heartbeats. In this paper, we presented a method based on a continuous-wave Doppler radar coupled with an artificial neural network (ANN) to detect heartbeats as individual events. To keep the method computationally simple, the ANN took the raw radar signal as input, while the output was minimally processed, ensuring low latency operation (<1 s). The performance of the proposed method was evaluated with respect to an ECG reference ("ground truth") in an experiment involving 21 healthy volunteers, who were sitting on a cushioned seat and were refrained from making excessive body movements. The results indicated that the presented approach is viable for the fast detection of individual heartbeats without heavy signal preprocessing.
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Affiliation(s)
- Nebojša Malešević
- Department of Biomedical Engineering, Faculty of Engineering, Lund University, Box 118, 221 00 Lund, Sweden;
| | - Vladimir Petrović
- School of Electrical Engineering, University of Belgrade, Bulevar kralja Aleksandra 73, 11120 Belgrade, Serbia
| | - Minja Belić
- Novelic, Veljka Dugoševića 54/A3, 11000 Belgrade, Serbia; (M.B.); (V.M.)
| | - Christian Antfolk
- Department of Biomedical Engineering, Faculty of Engineering, Lund University, Box 118, 221 00 Lund, Sweden;
| | - Veljko Mihajlović
- Novelic, Veljka Dugoševića 54/A3, 11000 Belgrade, Serbia; (M.B.); (V.M.)
| | - Milica Janković
- School of Electrical Engineering, University of Belgrade, Bulevar kralja Aleksandra 73, 11120 Belgrade, Serbia
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17
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Zhi J, Yi J, Tian M, Wang H, Kang N, Zheng X, Gao M. Immune gene signature delineates a subclass of thyroid cancer with unfavorable clinical outcomes. Aging (Albany NY) 2020; 12:5733-5750. [PMID: 32240105 PMCID: PMC7185138 DOI: 10.18632/aging.102963] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2019] [Accepted: 02/25/2020] [Indexed: 12/20/2022]
Abstract
Thyroid cancer (THCA) is a heterogeneous disease with multiple clinical outcomes Immune cells regulate its progression. Three immunomolecular subtypes (C1, C2, C3) were identified in gene expression data sets from TCGA and GEO databases. Among them, subtype C3 had highest frequency of BRAF mutations, lowest frequency of RAS mutations, highest mutation load and shorter progression-free survival. Functional enrichment analysis for the genes revealed that C1 was up-regulated in the ERK cascade pathway, C2 was up-regulated in cell migration and proliferation pathways, while C3 was enriched in body fluid, protein regulation and response to steroid hormones functions. Notably, the three molecular subtypes exhibit differences in immune microenvironments as shown by timer database and analysis of immune expression signatures. The abundance of B_cell, CD4_Tcell, Neutrophil, Macrophage and Dendritic cells in C2 subtype were lower than in C1 and C3 subtypes Leukocyte fraction, proliferation macrophage regulation, lymphocyte infiltration, IFN gamma response and TGF beta response scores were significantly higher in C3 compared with C1 and C2 subtypes. Unlike C3 subtype, it was observed that C1 and C2 subtypes were significantly negatively correlated with most immune checkpoint genes in two different cohorts. The characteristic genes were differentially expressed between cancer cells, adjacent tissues, and metastatic tissues in different cohorts. In summary, THCA can be subclassified into three molecular subtypes with distinct histological types, genetic and transcriptional phenotypes, all of which have potential clinical implications.
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Affiliation(s)
- Jingtai Zhi
- Department of Thyroid and Neck Tumor, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin 300060, People's Republic of China
| | - Jiaoyu Yi
- Department of Thyroid and Neck Tumor, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin 300060, People's Republic of China
| | - Mengran Tian
- Department of Thyroid and Neck Tumor, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin 300060, People's Republic of China
| | - Huijuan Wang
- Department of Thyroid and Neck Tumor, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin 300060, People's Republic of China
| | - Ning Kang
- Department of Thyroid and Neck Tumor, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin 300060, People's Republic of China
| | - Xiangqian Zheng
- Department of Thyroid and Neck Tumor, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin 300060, People's Republic of China
| | - Ming Gao
- Department of Thyroid and Neck Tumor, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin 300060, People's Republic of China
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18
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Wang L, Li X. Identification of an energy metabolism‑related gene signature in ovarian cancer prognosis. Oncol Rep 2020; 43:1755-1770. [PMID: 32186777 PMCID: PMC7160557 DOI: 10.3892/or.2020.7548] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Accepted: 01/17/2020] [Indexed: 01/08/2023] Open
Abstract
Changes in energy metabolism may be potential biomarkers and therapeutic targets for cancer as they frequently occur within cancer cells. However, basic cancer research has failed to reach a consistent conclusion on the function(s) of mitochondria in energy metabolism. The significance of energy metabolism in the prognosis of ovarian cancer remains unclear; thus, there remains an urgent need to systematically analyze the characteristics and clinical value of energy metabolism in ovarian cancer. Based on gene expression patterns, the present study aimed to analyze energy metabolism-associated characteristics to evaluate the prognosis of patients with ovarian cancer. A total of 39 energy metabolism-related genes significantly associated with prognosis were obtained, and three molecular subtypes were identified by nonnegative matrix factorization clustering, among which the C1 subtype was associated with poor clinical outcomes of ovarian cancer. The immune response was enhanced in the tumor microenvironment. A total of 888 differentially expressed genes were identified in C1 compared with the other subtypes, and the results of the pathway enrichment analysis demonstrated that they were enriched in the ‘PI3K-Akt signaling pathway’, ‘cAMP signaling pathway’, ‘ECM-receptor interaction’ and other pathways associated with the development and progression of tumors. Finally, eight characteristic genes (tolloid-like 1 gene, type XVI collagen, prostaglandin F2α, cartilage intermediate layer protein 2, kinesin family member 26b, interferon inducible protein 27, growth arrest-specific gene 1 and chemokine receptor 7) were obtained through LASSO feature selection; and a number of them have been demonstrated to be associated with ovarian cancer progression. In addition, Cox regression analysis was performed to establish an 8-gene signature, which was determined to be an independent prognostic factor for patients with ovarian cancer and could stratify sample risk in the training, test and external validation datasets (P<0.01; AUC >0.8). Gene Set Enrichment Analysis results revealed that the 8-gene signature was involved in important biological processes and pathways of ovarian cancer. In conclusion, the present study established an 8-gene signature associated with metabolic genes, which may provide new insights into the effects of energy metabolism on ovarian cancer. The 8-gene signature may serve as an independent prognostic factor for ovarian cancer patients.
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Affiliation(s)
- Lei Wang
- Department of Obstetrics and Gynecology, ShengJing Hospital of China Medical University, Shenyang, Liaoning 110004, P.R. China
| | - Xiuqin Li
- Department of Obstetrics and Gynecology, ShengJing Hospital of China Medical University, Shenyang, Liaoning 110004, P.R. China
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19
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Zhang J, Xiao X, Zhang X, Hua W. Tumor Microenvironment Characterization in Glioblastoma Identifies Prognostic and Immunotherapeutically Relevant Gene Signatures. J Mol Neurosci 2020; 70:738-750. [PMID: 32006162 DOI: 10.1007/s12031-020-01484-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2019] [Accepted: 01/17/2020] [Indexed: 12/13/2022]
Abstract
Tumor microenvironment (TME) cells are important elements in tumor tissue. There is increasing evidence that they have important clinical pathological significance in predicting tumor clinical outcomes and therapeutic effects. However, no systematic analysis of TME cell interactions in glioblastoma (GBM) has been reported. We systematically analyzed the transcriptional sequencing data of GBM to find an immune gene marker to predict the clinical results of GBM. First, we downloaded the expression profiles and clinical follow-up information of GBM from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO). CIBERSORT was used to evaluate the infiltration mode of TME in 757 patients, systematically correlated TME phenotype with genomic characteristics and clinicopathological characteristics of GBM, defined four TME phenotypes, and TMEScore was constructed using algorithms such as random forest and principal component analysis. There is a significant correlation between TMEScore and age of onset. High TMEScore samples are characterized by immune activation, TGF pathway activation, and high expression of immune checkpoint genes, while low TMEScore samples are characterized by high-frequency IDH1 and MET mutations. Therefore, a comprehensive landscape depicting the TME characteristics of GBM may help explain GBM's response to immunotherapy and provide new strategies for cancer treatment. In this study, TMEScore can be used as a new prognostic marker to predict the survival of GBM patients, and as a potential predictor of immune checkpoint inhibitor response.
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Affiliation(s)
- Jinsen Zhang
- Department of Neurosurgery, Huashan Hospital, Fudan University, No.12 Wulumuqi Zhong Road, Shanghai, 200040, China
| | - Xing Xiao
- Department of Neurosurgery, Huashan Hospital, Fudan University, No.12 Wulumuqi Zhong Road, Shanghai, 200040, China
| | - Xin Zhang
- Department of Neurosurgery, Huashan Hospital, Fudan University, No.12 Wulumuqi Zhong Road, Shanghai, 200040, China
| | - Wei Hua
- Department of Neurosurgery, Huashan Hospital, Fudan University, No.12 Wulumuqi Zhong Road, Shanghai, 200040, China.
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20
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Method for Distinguishing Humans and Animals in Vital Signs Monitoring Using IR-UWB Radar. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2019; 16:ijerph16224462. [PMID: 31766272 PMCID: PMC6888617 DOI: 10.3390/ijerph16224462] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Revised: 11/09/2019] [Accepted: 11/11/2019] [Indexed: 11/17/2022]
Abstract
Radar has been widely applied in many scenarios as a critical remote sensing tool for non-contact vital sign monitoring, particularly for sleep monitoring and heart rate measurement within the home environment. For non-contact monitoring with radar, interference from house pets is an important issue that has been neglected in the past. Many animals have respiratory frequencies similar to those of humans, and they are easily mistaken for human targets in non-contact monitoring, which would trigger a false alarm because of incorrect physiological parameters from the animal. In this study, humans and common pets in families, such as dogs, cats, and rabbits, were detected using an impulse radio ultrawideband (IR-UWB) radar, and the echo signals were analyzed in the time and frequency domains. Subsequently, based on the distinct in-body structure between humans and animals, we propose a parameter, the respiratory and heartbeat energy ratio (RHER), which reflects the contribution rate of breathing and heartbeat in the detected vital signs. Combining this parameter with the energy index, we developed a novel scheme to distinguish between humans and animals. In the developed scheme, after background noise removal and direct-current component suppression, an energy indicator is used to initially identify the target. The signal is then decomposed using a variational mode decomposition algorithm, and the variational intrinsic mode functions that represent human respiration and heartbeat components are obtained and utilized to calculate the RHER parameter. Finally, the RHER index is applied to rapidly distinguish between humans and animals. Our experimental results demonstrate that the proposed approach more effectively distinguishes between humans and animals in terms of monitoring vital signs than the existing methods. Furthermore, its rapidity and need for only minimal calculation resources enable it to meet the needs of real-time monitoring.
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