False discovery rate control in magnetic resonance imaging studies via Markov random fields

Neuroplasticity in children and adolescents in response to treatment intervention: A systematic review of the literature

The purpose of the present study was to conduct a systematic review of the literature, adhering to PRISMA guidelines, regarding evidence of neuroplasticity in children and adolescents in response to cognitive or sensory-motor interventions. Twenty-eight studies employing seven different types of neuroimaging techniques were included in the review. Findings revealed that significant variability existed across the 28 studies with regard to the clinical populations examined, type of interventions employed, neuroimaging methods, and the type of neuroimaging data included in the studies. Overall, results supported that experience-dependent interventions were associated with neuroplastic changes among children and adolescents in both neurotypical and clinical populations. However, it remains unclear whether these molecular neuroplastic changes, including the degree and direction of those differences, were the direct result of the intervention. Although the findings are encouraging, methodological limitations of the studies limit clinical utility of the results. Future studies are warranted that rigorously define the construct of neuroplasticity, establish consistent protocols across measurement techniques, and have adequate statistical power. Lastly, studies are needed to identify the functional and structural neuroplastic mechanisms that correspond with changes in cognition and behavior in child and adolescent samples.

Whole-Volume Clustering of Time Series Data from Zebrafish Brain Calcium Images via Mixture Modeling

Calcium is a ubiquitous messenger in neural signaling events. An increasing number of techniques are enabling visualization of neurological activity in animal models via luminescent proteins that bind to calcium ions. These techniques generate large volumes of spatially correlated time series. A model-based functional data analysis methodology via Gaussian mixtures is suggested for the clustering of data from such visualizations is proposed. The methodology is theoretically justified and a computationally efficient approach to estimation is suggested. An example analysis of a zebrafish imaging experiment is presented.

Transformation Invariant Control of Voxel-Wise False Discovery Rate

Multiple testing for statistical maps remains a critical and challenging problem in brain mapping. Since the false discovery rate (FDR) criterion was introduced to the neuroimaging community a decade ago, many variations have been proposed, mainly to enhance detection power. However, a fundamental geometrical property known as transformation invariance has not been adequately addressed, especially for the voxel-wise FDR. Correction of multiple testing applied after spatial transformation is not necessarily equivalent to transformation applied after correction in the original space. Without the invariance property, assigning different testing spaces will yield different results. We find that normalized residuals of linear models with Gaussian noises are uniformly distributed on a unit high-dimensional sphere, independent of t-statistics and F-statistics. By defining volumetric measure in the hyper-spherical space mapped by normalized residuals, instead of the image's Euclidean space, we can achieve invariant control of the FDR under diffeomorphic transformation. This hyper-spherical measure also reflects intrinsic "volume of randomness" in signals. Experiments with synthetic, semi-synthetic and real images demonstrate that our method significantly reduces FDR inconsistency introduced by the choice of testing spaces.

False Discovery Rate Approach to Unsupervised Image Change Detection

In this paper, we address the problem of unsupervised change detection on two or more coregistered images of the same object or scene at several time instants. We propose a novel empirical-Bayesian approach that is based on a false discovery rate formulation for statistical inference on local patch-based samples. This alternative error metric allows to efficiently adjust the family-wise error rate in case of the considered large-scale testing problem. The designed change detector operates in an unsupervised manner under the assumption of the limited amount of changes in the analyzed imagery. The detection is based on the use of various statistical features, which enable the detector to address application-specific detection problems provided an appropriate ad hoc feature choice. In particular, we demonstrate the use of the rank-based statistics: Wilcoxon and Cramér-von Mises for image pairs, and multisample Levene statistic for short image sequences. The experiments with remotely sensed radar, dermatological, and still camera surveillance imagery demonstrate accurate performance and flexibility of the proposed method.

Controlling False Discovery Rate in Signal Space for Transformation-Invariant Thresholding of Statistical Maps

Thresholding statistical maps with appropriate correction of multiple testing remains a critical and challenging problem in brain mapping. Since the false discovery rate (FDR) criterion was introduced to the neuroimaging community a decade ago, various improvements have been proposed. However, a highly desirable feature, transformation invariance, has not been adequately addressed, especially for voxel-based FDR. Thresholding applied after spatial transformation is not necessarily equivalent to transformation applied after thresholding in the original space. We find this problem closely related to another important issue: spatial correlation of signals. A Gaussian random vector-valued image after normalization is a random map from a Euclidean space to a high-dimension unit-sphere. Instead of defining the FDR measure in the image's Euclidean space, we define it in the signals' hyper-spherical space whose measure not only reflects the intrinsic "volume" of signals' randomness but also keeps invariant under images' spatial transformation. Experiments with synthetic and real images demonstrate that our method achieves transformation invariance and significantly minimizes the bias introduced by the choice of template images.

Development of MRI-based atlases of non-human brains

Brain atlases are a fundamental resource for neuroscience research. In the past few decades they have undergone a transition from traditional printed histological atlases to digital atlases made up of multiple data sets from multiple modalities, and atlases based on magnetic resonance imaging (MRI) have become widespread. Here we discuss the methods involved in making an MRI brain atlas, including registration of multiple data sets into a model, ontological classification, segmentation of a minimum deformation model, dissemination strategies, and applications of these atlases. Finally, we discuss possible future directions in the development of brain atlases.