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Li G, Deng Z, Ge Y, Luo S. HEAL: High-Frequency Enhanced and Attention-Guided Learning Network for Sparse-View CT Reconstruction. Bioengineering (Basel) 2024; 11:646. [PMID: 39061728 PMCID: PMC11273693 DOI: 10.3390/bioengineering11070646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 06/08/2024] [Accepted: 06/18/2024] [Indexed: 07/28/2024] Open
Abstract
X-ray computed tomography (CT) imaging technology has become an indispensable diagnostic tool in clinical examination. However, it poses a risk of ionizing radiation, making the reduction of radiation dose one of the current research hotspots in CT imaging. Sparse-view imaging, as one of the main methods for reducing radiation dose, has made significant progress in recent years. In particular, sparse-view reconstruction methods based on deep learning have shown promising results. Nevertheless, efficiently recovering image details under ultra-sparse conditions remains a challenge. To address this challenge, this paper proposes a high-frequency enhanced and attention-guided learning Network (HEAL). HEAL includes three optimization strategies to achieve detail enhancement: Firstly, we introduce a dual-domain progressive enhancement module, which leverages fidelity constraints within each domain and consistency constraints across domains to effectively narrow the solution space. Secondly, we incorporate both channel and spatial attention mechanisms to improve the network's feature-scaling process. Finally, we propose a high-frequency component enhancement regularization term that integrates residual learning with direction-weighted total variation, utilizing directional cues to effectively distinguish between noise and textures. The HEAL network is trained, validated and tested under different ultra-sparse configurations of 60 views and 30 views, demonstrating its advantages in reconstruction accuracy and detail enhancement.
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Affiliation(s)
- Guang Li
- Jiangsu Key Laboratory for Biomaterials and Devices, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China; (G.L.); (Z.D.)
| | - Zhenhao Deng
- Jiangsu Key Laboratory for Biomaterials and Devices, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China; (G.L.); (Z.D.)
| | - Yongshuai Ge
- Research Center for Medical Artificial Intelligence, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
- Paul C Lauterbur Research Center for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
- Key Laboratory of Biomedical Imaging Science and System, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Shouhua Luo
- Jiangsu Key Laboratory for Biomaterials and Devices, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China; (G.L.); (Z.D.)
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2
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Han Y. Hierarchical decomposed dual-domain deep learning for sparse-view CT reconstruction. Phys Med Biol 2024; 69:085019. [PMID: 38457843 DOI: 10.1088/1361-6560/ad31c7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Accepted: 03/08/2024] [Indexed: 03/10/2024]
Abstract
Objective. X-ray computed tomography employing sparse projection views has emerged as a contemporary technique to mitigate radiation dose. However, due to the inadequate number of projection views, an analytic reconstruction method utilizing filtered backprojection results in severe streaking artifacts. Recently, deep learning (DL) strategies employing image-domain networks have demonstrated remarkable performance in eliminating the streaking artifact caused by analytic reconstruction methods with sparse projection views. Nevertheless, it is difficult to clarify the theoretical justification for applying DL to sparse view computed tomography (CT) reconstruction, and it has been understood as restoration by removing image artifacts, not reconstruction.Approach. By leveraging the theory of deep convolutional framelets (DCF) and the hierarchical decomposition of measurement, this research reveals the constraints of conventional image and projection-domain DL methodologies, subsequently, the research proposes a novel dual-domain DL framework utilizing hierarchical decomposed measurements. Specifically, the research elucidates how the performance of the projection-domain network can be enhanced through a low-rank property of DCF and a bowtie support of hierarchical decomposed measurement in the Fourier domain.Main results. This study demonstrated performance improvement of the proposed framework based on the low-rank property, resulting in superior reconstruction performance compared to conventional analytic and DL methods.Significance. By providing a theoretically justified DL approach for sparse-view CT reconstruction, this study not only offers a superior alternative to existing methods but also opens new avenues for research in medical imaging. It highlights the potential of dual-domain DL frameworks to achieve high-quality reconstructions with lower radiation doses, thereby advancing the field towards safer and more efficient diagnostic techniques. The code is available athttps://github.com/hanyoseob/HDD-DL-for-SVCT.
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Affiliation(s)
- Yoseob Han
- Department of Electronic Engineering, Soongsil University, Republic of Korea
- Department of Intelligent Semiconductors, Soongsil University, Republic of Korea
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Chen H, Li Q, Zhou L, Li F. Deep learning-based algorithms for low-dose CT imaging: A review. Eur J Radiol 2024; 172:111355. [PMID: 38325188 DOI: 10.1016/j.ejrad.2024.111355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 01/05/2024] [Accepted: 01/31/2024] [Indexed: 02/09/2024]
Abstract
The computed tomography (CT) technique is extensively employed as an imaging modality in clinical settings. The radiation dose of CT, however, is significantly high, thereby raising concerns regarding the potential radiation damage it may cause. The reduction of X-ray exposure dose in CT scanning may result in a significant decline in imaging quality, thereby elevating the risk of missed diagnosis and misdiagnosis. The reduction of CT radiation dose and acquisition of high-quality images to meet clinical diagnostic requirements have always been a critical research focus and challenge in the field of CT. Over the years, scholars have conducted extensive research on enhancing low-dose CT (LDCT) imaging algorithms, among which deep learning-based algorithms have demonstrated superior performance. In this review, we initially introduced the conventional algorithms for CT image reconstruction along with their respective advantages and disadvantages. Subsequently, we provided a detailed description of four aspects concerning the application of deep neural networks in LDCT imaging process: preprocessing in the projection domain, post-processing in the image domain, dual-domain processing imaging, and direct deep learning-based reconstruction (DLR). Furthermore, an analysis was conducted to evaluate the merits and demerits of each method. The commercial and clinical applications of the LDCT-DLR algorithm were also presented in an overview. Finally, we summarized the existing issues pertaining to LDCT-DLR and concluded the paper while outlining prospective trends for algorithmic advancement.
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Affiliation(s)
- Hongchi Chen
- School of Medical Information Engineering, Gannan Medical University, Ganzhou 341000, China
| | - Qiuxia Li
- School of Medical Information Engineering, Gannan Medical University, Ganzhou 341000, China
| | - Lazhen Zhou
- School of Medical Information Engineering, Gannan Medical University, Ganzhou 341000, China
| | - Fangzuo Li
- School of Medical Information Engineering, Gannan Medical University, Ganzhou 341000, China; Key Laboratory of Prevention and Treatment of Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Gannan Medical University, Ganzhou 341000, China.
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Kang Y, Liu J, Wu F, Wang K, Qiang J, Hu D, Zhang Y. Deep convolutional dictionary learning network for sparse view CT reconstruction with a group sparse prior. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2024; 244:108010. [PMID: 38199137 DOI: 10.1016/j.cmpb.2024.108010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Revised: 12/25/2023] [Accepted: 01/05/2024] [Indexed: 01/12/2024]
Abstract
Purpose Numerous techniques based on deep learning have been utilized in sparse view computed tomography (CT) imaging. Nevertheless, the majority of techniques are instinctively constructed utilizing state-of-the-art opaque convolutional neural networks (CNNs) and lack interpretability. Moreover, CNNs tend to focus on local receptive fields and neglect nonlocal self-similarity prior information. Obtaining diagnostically valuable images from sparsely sampled projections is a challenging and ill-posed task. Method To address this issue, we propose a unique and understandable model named DCDL-GS for sparse view CT imaging. This model relies on a network comprised of convolutional dictionary learning and a nonlocal group sparse prior. To enhance the quality of image reconstruction, we utilize a neural network in conjunction with a statistical iterative reconstruction framework and perform a set number of iterations. Inspired by group sparsity priors, we adopt a novel group thresholding operation to improve the feature representation and constraint ability and obtain a theoretical interpretation. Furthermore, our DCDL-GS model incorporates filtered backprojection (FBP) reconstruction, fast sliding window nonlocal self-similarity operations, and a lightweight and interpretable convolutional dictionary learning network to enhance the applicability of the model. Results The efficiency of our proposed DCDL-GS model in preserving edges and recovering features is demonstrated by the visual results obtained on the LDCT-P and UIH datasets. Compared to the results of the most advanced techniques, the quantitative results are enhanced, with increases of 0.6-0.8 dB for the peak signal-to-noise ratio (PSNR), 0.005-0.01 for the structural similarity index measure (SSIM), and 1-1.3 for the regulated Fréchet inception distance (rFID) on the test dataset. The quantitative results also show the effectiveness of our proposed deep convolution iterative reconstruction module and nonlocal group sparse prior. Conclusion In this paper, we create a consolidated and enhanced mathematical model by integrating projection data and prior knowledge of images into a deep iterative model. The model is more practical and interpretable than existing approaches. The results from the experiment show that the proposed model performs well in comparison to the others.
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Affiliation(s)
- Yanqin Kang
- College of Computer and Information, Anhui Polytechnic University, Wuhu, China; Key Laboratory of Computer Network and Information Integration (Southeast University) Ministry of Education Nanjing, China
| | - Jin Liu
- College of Computer and Information, Anhui Polytechnic University, Wuhu, China; Key Laboratory of Computer Network and Information Integration (Southeast University) Ministry of Education Nanjing, China.
| | - Fan Wu
- College of Computer and Information, Anhui Polytechnic University, Wuhu, China
| | - Kun Wang
- College of Computer and Information, Anhui Polytechnic University, Wuhu, China
| | - Jun Qiang
- College of Computer and Information, Anhui Polytechnic University, Wuhu, China
| | - Dianlin Hu
- Key Laboratory of Computer Network and Information Integration (Southeast University) Ministry of Education Nanjing, China; School of Computer Science and Engineering, Southeast University, Nanjing, China
| | - Yikun Zhang
- Key Laboratory of Computer Network and Information Integration (Southeast University) Ministry of Education Nanjing, China; School of Computer Science and Engineering, Southeast University, Nanjing, China
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Lin J, Li J, Dou J, Zhong L, Di J, Qin Y. Dual-Domain Reconstruction Network Incorporating Multi-Level Wavelet Transform and Recurrent Convolution for Sparse View Computed Tomography Imaging. Tomography 2024; 10:133-158. [PMID: 38250957 PMCID: PMC11154272 DOI: 10.3390/tomography10010011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 01/08/2024] [Accepted: 01/10/2024] [Indexed: 01/23/2024] Open
Abstract
Sparse view computed tomography (SVCT) aims to reduce the number of X-ray projection views required for reconstructing the cross-sectional image of an object. While SVCT significantly reduces X-ray radiation dose and speeds up scanning, insufficient projection data give rise to issues such as severe streak artifacts and blurring in reconstructed images, thereby impacting the diagnostic accuracy of CT detection. To address this challenge, a dual-domain reconstruction network incorporating multi-level wavelet transform and recurrent convolution is proposed in this paper. The dual-domain network is composed of a sinogram domain network (SDN) and an image domain network (IDN). Multi-level wavelet transform is employed in both IDN and SDN to decompose sinograms and CT images into distinct frequency components, which are then processed through separate network branches to recover detailed information within their respective frequency bands. To capture global textures, artifacts, and shallow features in sinograms and CT images, a recurrent convolution unit (RCU) based on convolutional long and short-term memory (Conv-LSTM) is designed, which can model their long-range dependencies through recurrent calculation. Additionally, a self-attention-based multi-level frequency feature normalization fusion (MFNF) block is proposed to assist in recovering high-frequency components by aggregating low-frequency components. Finally, an edge loss function based on the Laplacian of Gaussian (LoG) is designed as the regularization term for enhancing the recovery of high-frequency edge structures. The experimental results demonstrate the effectiveness of our approach in reducing artifacts and enhancing the reconstruction of intricate structural details across various sparse views and noise levels. Our method excels in both performance and robustness, as evidenced by its superior outcomes in numerous qualitative and quantitative assessments, surpassing contemporary state-of-the-art CNNs or Transformer-based reconstruction methods.
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Affiliation(s)
- Juncheng Lin
- Institute of Advanced Photonics Technology, School of Information Engineering, Guangdong University of Technology, Guangzhou 510006, China; (J.L.); (J.L.); (J.D.); (L.Z.); (Y.Q.)
- Guangdong Provincial Key Laboratory of Information Photonics Technology, Guangdong University of Technology, Guangzhou 510006, China
- Key Laboratory of Photonic Technology for Integrated Sensing and Communication, Ministry of Education, Guangdong University of Technology, Guangzhou 510006, China
| | - Jialin Li
- Institute of Advanced Photonics Technology, School of Information Engineering, Guangdong University of Technology, Guangzhou 510006, China; (J.L.); (J.L.); (J.D.); (L.Z.); (Y.Q.)
- Guangdong Provincial Key Laboratory of Information Photonics Technology, Guangdong University of Technology, Guangzhou 510006, China
- Key Laboratory of Photonic Technology for Integrated Sensing and Communication, Ministry of Education, Guangdong University of Technology, Guangzhou 510006, China
| | - Jiazhen Dou
- Institute of Advanced Photonics Technology, School of Information Engineering, Guangdong University of Technology, Guangzhou 510006, China; (J.L.); (J.L.); (J.D.); (L.Z.); (Y.Q.)
- Guangdong Provincial Key Laboratory of Information Photonics Technology, Guangdong University of Technology, Guangzhou 510006, China
- Key Laboratory of Photonic Technology for Integrated Sensing and Communication, Ministry of Education, Guangdong University of Technology, Guangzhou 510006, China
| | - Liyun Zhong
- Institute of Advanced Photonics Technology, School of Information Engineering, Guangdong University of Technology, Guangzhou 510006, China; (J.L.); (J.L.); (J.D.); (L.Z.); (Y.Q.)
- Guangdong Provincial Key Laboratory of Information Photonics Technology, Guangdong University of Technology, Guangzhou 510006, China
- Key Laboratory of Photonic Technology for Integrated Sensing and Communication, Ministry of Education, Guangdong University of Technology, Guangzhou 510006, China
| | - Jianglei Di
- Institute of Advanced Photonics Technology, School of Information Engineering, Guangdong University of Technology, Guangzhou 510006, China; (J.L.); (J.L.); (J.D.); (L.Z.); (Y.Q.)
- Guangdong Provincial Key Laboratory of Information Photonics Technology, Guangdong University of Technology, Guangzhou 510006, China
- Key Laboratory of Photonic Technology for Integrated Sensing and Communication, Ministry of Education, Guangdong University of Technology, Guangzhou 510006, China
| | - Yuwen Qin
- Institute of Advanced Photonics Technology, School of Information Engineering, Guangdong University of Technology, Guangzhou 510006, China; (J.L.); (J.L.); (J.D.); (L.Z.); (Y.Q.)
- Guangdong Provincial Key Laboratory of Information Photonics Technology, Guangdong University of Technology, Guangzhou 510006, China
- Key Laboratory of Photonic Technology for Integrated Sensing and Communication, Ministry of Education, Guangdong University of Technology, Guangzhou 510006, China
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Liu P, Fang C, Qiao Z. A dense and U-shaped transformer with dual-domain multi-loss function for sparse-view CT reconstruction. JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY 2024; 32:207-228. [PMID: 38306086 DOI: 10.3233/xst-230184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2024]
Abstract
OBJECTIVE CT image reconstruction from sparse-view projections is an important imaging configuration for low-dose CT, as it can reduce radiation dose. However, the CT images reconstructed from sparse-view projections by traditional analytic algorithms suffer from severe sparse artifacts. Therefore, it is of great value to develop advanced methods to suppress these artifacts. In this work, we aim to use a deep learning (DL)-based method to suppress sparse artifacts. METHODS Inspired by the good performance of DenseNet and Transformer architecture in computer vision tasks, we propose a Dense U-shaped Transformer (D-U-Transformer) to suppress sparse artifacts. This architecture exploits the advantages of densely connected convolutions in capturing local context and Transformer in modelling long-range dependencies, and applies channel attention to fusion features. Moreover, we design a dual-domain multi-loss function with learned weights for the optimization of the model to further improve image quality. RESULTS Experimental results of our proposed D-U-Transformer yield performance improvements on the well-known Mayo Clinic LDCT dataset over several representative DL-based models in terms of artifact suppression and image feature preservation. Extensive internal ablation experiments demonstrate the effectiveness of the components in the proposed model for sparse-view computed tomography (SVCT) reconstruction. SIGNIFICANCE The proposed method can effectively suppress sparse artifacts and achieve high-precision SVCT reconstruction, thus promoting clinical CT scanning towards low-dose radiation and high-quality imaging. The findings of this work can be applied to denoising and artifact removal tasks in CT and other medical images.
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Affiliation(s)
- Peng Liu
- School of Computer and Information Technology, Shanxi University, Taiyuan, China
- Department of Big Data and Intelligent Engineering, Shanxi Institute of Technology, Yangquan, China
| | - Chenyun Fang
- School of Computer and Information Technology, Shanxi University, Taiyuan, China
| | - Zhiwei Qiao
- School of Computer and Information Technology, Shanxi University, Taiyuan, China
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Chao L, Wang Y, Zhang T, Shan W, Zhang H, Wang Z, Li Q. Joint denoising and interpolating network for low-dose cone-beam CT reconstruction under hybrid dose-reduction strategy. Comput Biol Med 2024; 168:107830. [PMID: 38086140 DOI: 10.1016/j.compbiomed.2023.107830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 11/12/2023] [Accepted: 12/04/2023] [Indexed: 01/10/2024]
Abstract
Cone-beam computed tomography (CBCT) is generally reconstructed with hundreds of two-dimensional X-Ray projections through the FDK algorithm, and its excessive ionizing radiation of X-Ray may impair patients' health. Two common dose-reduction strategies are to either lower the intensity of X-Ray, i.e., low-intensity CBCT, or reduce the number of projections, i.e., sparse-view CBCT. Existing efforts improve the low-dose CBCT images only under a single dose-reduction strategy. In this paper, we argue that applying the two strategies simultaneously can reduce dose in a gentle manner and avoid the extreme degradation of the projection data in a single dose-reduction strategy, especially under ultra-low-dose situations. Therefore, we develop a Joint Denoising and Interpolating Network (JDINet) in projection domain to improve the CBCT quality with the hybrid low-intensity and sparse-view projections. Specifically, JDINet mainly includes two important components, i.e., denoising module and interpolating module, to respectively suppress the noise caused by the low-intensity strategy and interpolate the missing projections caused by the sparse-view strategy. Because FDK actually utilizes the projection information after ramp-filtering, we develop a filtered structural similarity constraint to help JDINet focus on the reconstruction-required information. Afterward, we employ a Postprocessing Network (PostNet) in the reconstruction domain to refine the CBCT images that are reconstructed with denoised and interpolated projections. In general, a complete CBCT reconstruction framework is built with JDINet, FDK, and PostNet. Experiments demonstrate that our framework decreases RMSE by approximately 8 %, 15 %, and 17 %, respectively, on the 1/8, 1/16, and 1/32 dose data, compared to the latest methods. In conclusion, our learning-based framework can be deeply imbedded into the CBCT systems to promote the development of CBCT. Source code is available at https://github.com/LianyingChao/FusionLowDoseCBCT.
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Affiliation(s)
- Lianying Chao
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China; MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Yanli Wang
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China; MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - TaoTao Zhang
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China; MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, China; Northern Jiangsu People's Hospital, Yangzhou, Jiangsu, China
| | - Wenqi Shan
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China; MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Haobo Zhang
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China; MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Zhiwei Wang
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China; MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, China
| | - Qiang Li
- Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei, China; MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, China.
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Subbakrishna Adishesha A, Vanselow DJ, La Riviere P, Cheng KC, Huang SX. Sinogram domain angular upsampling of sparse-view micro-CT with dense residual hierarchical transformer and attention-weighted loss. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 242:107802. [PMID: 37738839 PMCID: PMC11158828 DOI: 10.1016/j.cmpb.2023.107802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Revised: 07/23/2023] [Accepted: 09/04/2023] [Indexed: 09/24/2023]
Abstract
Reduced angular sampling is a key strategy for increasing scanning efficiency of micron-scale computed tomography (micro-CT). Despite boosting throughput, this strategy introduces noise and extrapolation artifacts due to undersampling. In this work, we present a solution to this issue, by proposing a novel Dense Residual Hierarchical Transformer (DRHT) network to recover high-quality sinograms from 2×, 4× and 8× undersampled scans. DRHT is trained to utilize limited information available from sparsely angular sampled scans and once trained, it can be applied to recover higher-resolution sinograms from shorter scan sessions. Our proposed DRHT model aggregates the benefits of a hierarchical- multi-scale structure along with the combination of local and global feature extraction through dense residual convolutional blocks and non-overlapping window transformer blocks respectively. We also propose a novel noise-aware loss function named KL-L1 to improve sinogram restoration to full resolution. KL-L1, a weighted combination of pixel-level and distribution-level cost functions, leverages inconsistencies in noise distribution and uses learnable spatial weight maps to improve the training of the DRHT model. We present ablation studies and evaluations of our method against other state-of-the-art (SOTA) models over multiple datasets. Our proposed DRHT network achieves an average increase in peak signal to noise ratio (PSNR) of 17.73 dB and a structural similarity index (SSIM) of 0.161, for 8× upsampling, across the three diverse datasets, compared to their respective Bicubic interpolated versions. This novel approach can be utilized to decrease radiation exposure to patients and reduce imaging time for large-scale CT imaging projects.
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Affiliation(s)
| | - Daniel J Vanselow
- Penn State College of Medicine, The Jake Gittlen Laboratories for Cancer Research, Hershey, 17033, PA, USA; Penn State College of Medicine, Division of Experimental Pathology, Department of Pathology, Hershey, 17033, PA, USA.
| | - Patrick La Riviere
- University of Chicago, Department of Radiology, Chicago, 60637, IL, USA.
| | - Keith C Cheng
- Penn State College of Medicine, The Jake Gittlen Laboratories for Cancer Research, Hershey, 17033, PA, USA; Penn State College of Medicine, Division of Experimental Pathology, Department of Pathology, Hershey, 17033, PA, USA.
| | - Sharon X Huang
- Pennsylvania State University, College of Information Sciences and Technology, University Park, 16802, PA, USA.
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Cheng CC, Chiang MH, Yeh CH, Lee TT, Ching YT, Hwu Y, Chiang AS. Sparse-view synchrotron X-ray tomographic reconstruction with learning-based sinogram synthesis. JOURNAL OF SYNCHROTRON RADIATION 2023; 30:1135-1142. [PMID: 37850562 PMCID: PMC10624031 DOI: 10.1107/s1600577523008032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 09/14/2023] [Indexed: 10/19/2023]
Abstract
Synchrotron radiation can be used as a light source in X-ray microscopy to acquire a high-resolution image of a microscale object for tomography. However, numerous projections must be captured for a high-quality tomographic image to be reconstructed; thus, image acquisition is time consuming. Such dense imaging is not only expensive and time consuming but also results in the target receiving a large dose of radiation. To resolve these problems, sparse acquisition techniques have been proposed; however, the generated images often have many artefacts and are noisy. In this study, a deep-learning-based approach is proposed for the tomographic reconstruction of sparse-view projections that are acquired with a synchrotron light source; this approach proceeds as follows. A convolutional neural network (CNN) is used to first interpolate sparse X-ray projections and then synthesize a sufficiently large set of images to produce a sinogram. After the sinogram is constructed, a second CNN is used for error correction. In experiments, this method successfully produced high-quality tomography images from sparse-view projections for two data sets comprising Drosophila and mouse tomography images. However, the initial results for the smaller mouse data set were poor; therefore, transfer learning was used to apply the Drosophila model to the mouse data set, greatly improving the quality of the reconstructed sinogram. The method could be used to achieve high-quality tomography while reducing the radiation dose to imaging subjects and the imaging time and cost.
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Affiliation(s)
- Chang-Chieh Cheng
- Information Technology Service Center, National Yang Ming Chiao Tung University, 1001 University Road, Hsinchu, Taiwan
| | - Ming-Hsuan Chiang
- Department of Computer Science, National Yang Ming Chiao Tung University, 1001 University Road, Hsinchu, Taiwan
| | - Chao-Hong Yeh
- Institute of Data Science and Engineering, National Yang Ming Chiao Tung University, 1001 University Road, Hsinchu, Taiwan
| | - Tsung-Tse Lee
- Institute of Physics, Academia Sinica, 128 Academia Road, Nankang, Taipei, Taiwan
| | - Yu-Tai Ching
- Department of Computer Science, National Yang Ming Chiao Tung University, 1001 University Road, Hsinchu, Taiwan
| | - Yeukuang Hwu
- Institute of Physics, Academia Sinica, 128 Academia Road, Nankang, Taipei, Taiwan
| | - Ann-Shyn Chiang
- Brain Research Center, National Tsing Hua University, Hsinchu 30013, Taiwan
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10
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Li Q, Li R, Wang T, Cheng Y, Qiang Y, Wu W, Zhao J, Zhang D. A cascade-based dual-domain data correction network for sparse view CT image reconstruction. Comput Biol Med 2023; 165:107345. [PMID: 37603960 DOI: 10.1016/j.compbiomed.2023.107345] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Revised: 07/18/2023] [Accepted: 08/07/2023] [Indexed: 08/23/2023]
Abstract
Computed tomography (CT) provides non-invasive anatomical structures of the human body and is also widely used for clinical diagnosis, but excessive ionizing radiation in X-rays can cause harm to the human body. Therefore, the researchers obtained sparse sinograms reconstructed sparse view CT images (SVCT) by reducing the amount of X-ray projection, thereby reducing the radiological effects caused by radiation. This paper proposes a cascade-based dual-domain data correction network (CDDCN), which can effectively combine the complementary information contained in the sinogram domain and the image domain to reconstruct high-quality CT images from sparse view sinograms. Specifically, several encoder-decoder subnets are cascaded in the sinogram domain to reconstruct artifact-free and noise-free CT images. In the encoder-decoder subnets, spatial-channel domain learning is designed to achieve efficient feature fusion through a group merging structure, providing continuous and elaborate pixel-level features and improving feature extraction efficiency. At the same time, to ensure that the original sinogram data collected can be retained, a sinogram data consistency layer is proposed to ensure the fidelity of the sinogram data. To further maintain the consistency between the reconstructed image and the reference image, a multi-level composite loss function is designed for regularization to compensate for excessive smoothing and distortion of the image caused by pixel loss and preserve image details and texture. Quantitative and qualitative analysis shows that CDDCN achieves competitive results in artifact removal, edge preservation, detail restoration, and visual improvement for sparsely sampled data under different views.
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Affiliation(s)
- Qing Li
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan, 030024, China
| | - Runrui Li
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan, 030024, China
| | - Tao Wang
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan, 030024, China
| | - Yubin Cheng
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan, 030024, China
| | - Yan Qiang
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan, 030024, China.
| | - Wei Wu
- Department of Clinical Laboratory, Affiliated People's Hospital of Shanxi Medical University, Shanxi Provincial People's Hospital, Taiyuan, 030012, China
| | - Juanjuan Zhao
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan, 030024, China; School of Information Engineering, Jinzhong College of Information, Jinzhong, 030800, China
| | - Dongxu Zhang
- College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Taiyuan, 030024, China
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Liu J, Zhang T, Kang Y, Wang Y, Zhang Y, Hu D, Chen Y. Deep residual constrained reconstruction via learned convolutional sparse coding for low-dose CT imaging. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2023.104868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/28/2023]
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12
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Li Y, Sun X, Wang S, Li X, Qin Y, Pan J, Chen P. MDST: multi-domain sparse-view CT reconstruction based on convolution and swin transformer. Phys Med Biol 2023; 68:095019. [PMID: 36889004 DOI: 10.1088/1361-6560/acc2ab] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 03/08/2023] [Indexed: 03/10/2023]
Abstract
Objective.Sparse-view computed tomography (SVCT), which can reduce the radiation doses administered to patients and hasten data acquisition, has become an area of particular interest to researchers. Most existing deep learning-based image reconstruction methods are based on convolutional neural networks (CNNs). Due to the locality of convolution and continuous sampling operations, existing approaches cannot fully model global context feature dependencies, which makes the CNN-based approaches less efficient in modeling the computed tomography (CT) images with various structural information.Approach.To overcome the above challenges, this paper develops a novel multi-domain optimization network based on convolution and swin transformer (MDST). MDST uses swin transformer block as the main building block in both projection (residual) domain and image (residual) domain sub-networks, which models global and local features of the projections and reconstructed images. MDST consists of two modules for initial reconstruction and residual-assisted reconstruction, respectively. The sparse sinogram is first expanded in the initial reconstruction module with a projection domain sub-network. Then, the sparse-view artifacts are effectively suppressed by an image domain sub-network. Finally, the residual assisted reconstruction module to correct the inconsistency of the initial reconstruction, further preserving image details.Main results. Extensive experiments on CT lymph node datasets and real walnut datasets show that MDST can effectively alleviate the loss of fine details caused by information attenuation and improve the reconstruction quality of medical images.Significance.MDST network is robust and can effectively reconstruct images with different noise level projections. Different from the current prevalent CNN-based networks, MDST uses transformer as the main backbone, which proves the potential of transformer in SVCT reconstruction.
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Affiliation(s)
- Yu Li
- Department of Information and Communication Engineering, North University of China, Taiyuan, People's Republic of China
- The State Key Lab for Electronic Testing Technology, North University of China, People's Republic of China
| | - XueQin Sun
- Department of Information and Communication Engineering, North University of China, Taiyuan, People's Republic of China
- The State Key Lab for Electronic Testing Technology, North University of China, People's Republic of China
| | - SuKai Wang
- Department of Information and Communication Engineering, North University of China, Taiyuan, People's Republic of China
- The State Key Lab for Electronic Testing Technology, North University of China, People's Republic of China
| | - XuRu Li
- Department of Information and Communication Engineering, North University of China, Taiyuan, People's Republic of China
- The State Key Lab for Electronic Testing Technology, North University of China, People's Republic of China
| | - YingWei Qin
- Department of Information and Communication Engineering, North University of China, Taiyuan, People's Republic of China
- The State Key Lab for Electronic Testing Technology, North University of China, People's Republic of China
| | - JinXiao Pan
- Department of Information and Communication Engineering, North University of China, Taiyuan, People's Republic of China
- The State Key Lab for Electronic Testing Technology, North University of China, People's Republic of China
| | - Ping Chen
- Department of Information and Communication Engineering, North University of China, Taiyuan, People's Republic of China
- The State Key Lab for Electronic Testing Technology, North University of China, People's Republic of China
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Yang L, Li Z, Ge R, Zhao J, Si H, Zhang D. Low-Dose CT Denoising via Sinogram Inner-Structure Transformer. IEEE TRANSACTIONS ON MEDICAL IMAGING 2023; 42:910-921. [PMID: 36331637 DOI: 10.1109/tmi.2022.3219856] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Low-Dose Computed Tomography (LDCT) technique, which reduces the radiation harm to human bodies, is now attracting increasing interest in the medical imaging field. As the image quality is degraded by low dose radiation, LDCT exams require specialized reconstruction methods or denoising algorithms. However, most of the recent effective methods overlook the inner-structure of the original projection data (sinogram) which limits their denoising ability. The inner-structure of the sinogram represents special characteristics of the data in the sinogram domain. By maintaining this structure while denoising, the noise can be obviously restrained. Therefore, we propose an LDCT denoising network namely Sinogram Inner-Structure Transformer (SIST) to reduce the noise by utilizing the inner-structure in the sinogram domain. Specifically, we study the CT imaging mechanism and statistical characteristics of sinogram to design the sinogram inner-structure loss including the global and local inner-structure for restoring high-quality CT images. Besides, we propose a sinogram transformer module to better extract sinogram features. The transformer architecture using a self-attention mechanism can exploit interrelations between projections of different view angles, which achieves an outstanding performance in sinogram denoising. Furthermore, in order to improve the performance in the image domain, we propose the image reconstruction module to complementarily denoise both in the sinogram and image domain.
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14
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Xia W, Shan H, Wang G, Zhang Y. Physics-/Model-Based and Data-Driven Methods for Low-Dose Computed Tomography: A survey. IEEE SIGNAL PROCESSING MAGAZINE 2023; 40:89-100. [PMID: 38404742 PMCID: PMC10883591 DOI: 10.1109/msp.2022.3204407] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/27/2024]
Abstract
Since 2016, deep learning (DL) has advanced tomographic imaging with remarkable successes, especially in low-dose computed tomography (LDCT) imaging. Despite being driven by big data, the LDCT denoising and pure end-to-end reconstruction networks often suffer from the black box nature and major issues such as instabilities, which is a major barrier to apply deep learning methods in low-dose CT applications. An emerging trend is to integrate imaging physics and model into deep networks, enabling a hybridization of physics/model-based and data-driven elements. In this paper, we systematically review the physics/model-based data-driven methods for LDCT, summarize the loss functions and training strategies, evaluate the performance of different methods, and discuss relevant issues and future directions.
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Affiliation(s)
- Wenjun Xia
- School of Cyber Science and Engineering, Sichuan University, Chengdu 610065, China
| | - Hongming Shan
- Institute of Science and Technology for Brain-Inspired Intelligence and MOE Frontiers Center for Brain Science, Fudan University, Shanghai, and also with Shanghai Center for Brain Science and Brain-Inspired Technology, Shanghai 200433, China
| | - Ge Wang
- Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180 USA
| | - Yi Zhang
- School of Cyber Science and Engineering, Sichuan University, Chengdu 610065, China
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15
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Jiang Z, Chang Y, Zhang Z, Yin FF, Ren L. Fast four-dimensional cone-beam computed tomography reconstruction using deformable convolutional networks. Med Phys 2022; 49:6461-6476. [PMID: 35713411 PMCID: PMC9588592 DOI: 10.1002/mp.15806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Revised: 06/06/2022] [Accepted: 06/06/2022] [Indexed: 11/08/2022] Open
Abstract
BACKGROUND Although four-dimensional cone-beam computed tomography (4D-CBCT) is valuable to provide onboard image guidance for radiotherapy of moving targets, it requires a long acquisition time to achieve sufficient image quality for target localization. To improve the utility, it is highly desirable to reduce the 4D-CBCT scanning time while maintaining high-quality images. Current motion-compensated methods are limited by slow speed and compensation errors due to the severe intraphase undersampling. PURPOSE In this work, we aim to propose an alternative feature-compensated method to realize the fast 4D-CBCT with high-quality images. METHODS We proposed a feature-compensated deformable convolutional network (FeaCo-DCN) to perform interphase compensation in the latent feature space, which has not been explored by previous studies. In FeaCo-DCN, encoding networks extract features from each phase, and then, features of other phases are deformed to those of the target phase via deformable convolutional networks. Finally, a decoding network combines and decodes features from all phases to yield high-quality images of the target phase. The proposed FeaCo-DCN was evaluated using lung cancer patient data. RESULTS (1) FeaCo-DCN generated high-quality images with accurate and clear structures for a fast 4D-CBCT scan; (2) 4D-CBCT images reconstructed by FeaCo-DCN achieved 3D tumor localization accuracy within 2.5 mm; (3) image reconstruction is nearly real time; and (4) FeaCo-DCN achieved superior performance by all metrics compared to the top-ranked techniques in the AAPM SPARE Challenge. CONCLUSION The proposed FeaCo-DCN is effective and efficient in reconstructing 4D-CBCT while reducing about 90% of the scanning time, which can be highly valuable for moving target localization in image-guided radiotherapy.
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Affiliation(s)
- Zhuoran Jiang
- Medical Physics Graduate Program, Duke University, Durham, NC, 27705, USA
| | - Yushi Chang
- Department of Radiation Oncology, Hospital of University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Zeyu Zhang
- Medical Physics Graduate Program, Duke University, Durham, NC, 27705, USA
| | - Fang-Fang Yin
- Medical Physics Graduate Program, Duke University, Durham, NC, 27705, USA
- Department of Radiation Oncology, Duke University Medical Center, Durham, NC, 27710, USA
- Medical Physics Graduate Program, Duke Kunshan University, Kunshan, Jiangsu, 215316, China
| | - Lei Ren
- Department of Radiation Oncology, University of Maryland, Baltimore, MD, 21201, USA
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16
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Hu D, Zhang Y, Liu J, Luo S, Chen Y. DIOR: Deep Iterative Optimization-Based Residual-Learning for Limited-Angle CT Reconstruction. IEEE TRANSACTIONS ON MEDICAL IMAGING 2022; 41:1778-1790. [PMID: 35100109 DOI: 10.1109/tmi.2022.3148110] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Limited-angle CT is a challenging problem in real applications. Incomplete projection data will lead to severe artifacts and distortions in reconstruction images. To tackle this problem, we propose a novel reconstruction framework termed Deep Iterative Optimization-based Residual-learning (DIOR) for limited-angle CT. Instead of directly deploying the regularization term on image space, the DIOR combines iterative optimization and deep learning based on the residual domain, significantly improving the convergence property and generalization ability. Specifically, the asymmetric convolutional modules are adopted to strengthen the feature extraction capacity in smooth regions for deep priors. Besides, in our DIOR method, the information contained in low-frequency and high-frequency components is also evaluated by perceptual loss to improve the performance in tissue preservation. Both simulated and clinical datasets are performed to validate the performance of DIOR. Compared with existing competitive algorithms, quantitative and qualitative results show that the proposed method brings a promising improvement in artifact removal, detail restoration and edge preservation.
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17
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Pan J, Zhang H, Wu W, Gao Z, Wu W. Multi-domain integrative Swin transformer network for sparse-view tomographic reconstruction. PATTERNS (NEW YORK, N.Y.) 2022; 3:100498. [PMID: 35755869 PMCID: PMC9214338 DOI: 10.1016/j.patter.2022.100498] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2021] [Revised: 01/17/2022] [Accepted: 03/30/2022] [Indexed: 11/09/2022]
Abstract
Decreasing projection views to a lower X-ray radiation dose usually leads to severe streak artifacts. To improve image quality from sparse-view data, a multi-domain integrative Swin transformer network (MIST-net) was developed and is reported in this article. First, MIST-net incorporated lavish domain features from data, residual data, image, and residual image using flexible network architectures, where a residual data and residual image sub-network was considered as a data consistency module to eliminate interpolation and reconstruction errors. Second, a trainable edge enhancement filter was incorporated to detect and protect image edges. Third, a high-quality reconstruction Swin transformer (i.e., Recformer) was designed to capture image global features. The experimental results on numerical and real cardiac clinical datasets with 48 views demonstrated that our proposed MIST-net provided better image quality with more small features and sharp edges than other competitors.
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Affiliation(s)
- Jiayi Pan
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, Guangdong, China
| | - Heye Zhang
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, Guangdong, China
| | - Weifei Wu
- Department of Orthopedics, The People’s Hospital of China Three Gorges University, The First People’s Hospital of Yichang, Yichang, Hubei, China
| | - Zhifan Gao
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, Guangdong, China
| | - Weiwen Wu
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, Guangdong, China
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18
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Chao L, Zhang P, Wang Y, Wang Z, Xu W, Li Q. Dual-domain attention-guided convolutional neural network for low-dose cone-beam computed tomography reconstruction. Knowl Based Syst 2022. [DOI: 10.1016/j.knosys.2022.109295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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19
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NeuRec: Incorporating Interpatient prior to Sparse-View Image Reconstruction for Neurorehabilitation. BIOMED RESEARCH INTERNATIONAL 2022; 2022:5426643. [PMID: 35586813 PMCID: PMC9110181 DOI: 10.1155/2022/5426643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 03/31/2022] [Indexed: 12/02/2022]
Abstract
Medical imaging technologies such as computed tomography (CT) and magnetic resonance imaging (MRI) imaging are indispensable for contemporary neurorehabilitation diagnostics, intervention, and monitoring. It would be desirable to reconstruct images from sparse measurements to reduce the ionizing radiation and motion artifacts. Although recent coordinate-based representation methods have shown promise advances for sparse-view reconstruction, they overfit a single MLP on a single patient. In this work, we generalize it across many patients by incorporating an interpatient prior into the ill-posed inverse/reconstruction problem, which is the missing ingredient in the previous works. The experiment demonstrates that our method significantly improves image quality over the state-of-the-art both qualitatively and quantitatively. Thus, our method provides a powerful and principled means to deal with the measurement-scarce problem.
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20
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Bai J, Liu Y, Yang H. Sparse-View CT Reconstruction Based on a Hybrid Domain Model with Multi-Level Wavelet Transform. SENSORS 2022; 22:s22093228. [PMID: 35590918 PMCID: PMC9105730 DOI: 10.3390/s22093228] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Revised: 04/04/2022] [Accepted: 04/19/2022] [Indexed: 02/01/2023]
Abstract
The reconstruction of sparsely sampled projection data will generate obvious streaking artifacts, resulting in image quality degradation and affecting medical diagnosis results. Wavelet transform can effectively decompose directional components of image, so the artifact features and edge details with high directionality can be better detected in the wavelet domain. Therefore, a hybrid domain method based on wavelet transform is proposed in this paper for the sparse-view CT reconstruction. The reconstruction model combines wavelet, spatial, and radon domains to restore the projection consistency and enhance image details. In addition, the global distribution of artifacts requires the network to have a large receptive field, so that a multi-level wavelet transform network (MWCNN) is applied to the hybrid domain model. Wavelet transform is used in the encoding part of the network to reduce the size of feature maps instead of pooling operation and inverse wavelet transform is deployed in the decoding part to recover image details. The proposed method can achieve PSNR of 41.049 dB and SSIM of 0.958 with 120 projections of three angular intervals, and obtain the highest values in this paper. Through the results of numerical analysis and reconstructed images, it shows that the hybrid domain method is superior to the single-domain methods. At the same time, the multi-level wavelet transform model is more suitable for CT reconstruction than the single-level wavelet transform.
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21
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Jiang Z, Zhang Z, Chang Y, Ge Y, Yin FF, Ren L. Enhancement of 4-D Cone-Beam Computed Tomography (4D-CBCT) Using a Dual-Encoder Convolutional Neural Network (DeCNN). IEEE TRANSACTIONS ON RADIATION AND PLASMA MEDICAL SCIENCES 2022; 6:222-230. [PMID: 35386935 PMCID: PMC8979258 DOI: 10.1109/trpms.2021.3133510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
4D-CBCT is a powerful tool to provide respiration-resolved images for the moving target localization. However, projections in each respiratory phase are intrinsically under-sampled under the clinical scanning time and imaging dose constraints. Images reconstructed by compressed sensing (CS)-based methods suffer from blurred edges. Introducing the average-4D-image constraint to the CS-based reconstruction, such as prior-image-constrained CS (PICCS), can improve the edge sharpness of the stable structures. However, PICCS can lead to motion artifacts in the moving regions. In this study, we proposed a dual-encoder convolutional neural network (DeCNN) to realize the average-image-constrained 4D-CBCT reconstruction. The proposed DeCNN has two parallel encoders to extract features from both the under-sampled target phase images and the average images. The features are then concatenated and fed into the decoder for the high-quality target phase image reconstruction. The reconstructed 4D-CBCT using of the proposed DeCNN from the real lung cancer patient data showed (1) qualitatively, clear and accurate edges for both stable and moving structures; (2) quantitatively, low-intensity errors, high peak signal-to-noise ratio, and high structural similarity compared to the ground truth images; and (3) superior quality to those reconstructed by several other state-of-the-art methods including the back-projection, CS total-variation, PICCS, and the single-encoder CNN. Overall, the proposed DeCNN is effective in exploiting the average-image constraint to improve the 4D-CBCT image quality.
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Affiliation(s)
- Zhuoran Jiang
- Medical Physics Graduate Program, Duke University, 2424 Erwin Road Suite 101, Durham, NC, 27705, USA
| | - Zeyu Zhang
- Medical Physics Graduate Program, Duke University, 2424 Erwin Road Suite 101, Durham, NC, 27705, USA
| | - Yushi Chang
- Department of Radiation Oncology, Hospital of University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Yun Ge
- School of Electronic Science and Engineering, Nanjing University, 163 Xianlin Road, Nanjing, 210046, China
| | - Fang-Fang Yin
- Department of Radiation Oncology, Duke University Medical Center, DUMC Box 3295, Durham, North Carolina, 27710, USA, and is also with Medical Physics Graduate Program, Duke University, 2424 Erwin Road Suite 101, Durham, NC 27705, USA, and is also with Medical Physics Graduate Program, Duke Kunshan University, Kunshan, Jiangsu, 215316, China
| | - Lei Ren
- Department of Radiation Oncology, University of Maryland, Baltimore, MD, 21201, USA
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22
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Chao L, Wang Z, Zhang H, Xu W, Zhang P, Li Q. Sparse-view cone beam CT reconstruction using dual CNNs in projection domain and image domain. Neurocomputing 2021. [DOI: 10.1016/j.neucom.2021.12.096] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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23
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Wu W, Hu D, Niu C, Yu H, Vardhanabhuti V, Wang G. DRONE: Dual-Domain Residual-based Optimization NEtwork for Sparse-View CT Reconstruction. IEEE TRANSACTIONS ON MEDICAL IMAGING 2021; 40:3002-3014. [PMID: 33956627 PMCID: PMC8591633 DOI: 10.1109/tmi.2021.3078067] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Deep learning has attracted rapidly increasing attention in the field of tomographic image reconstruction, especially for CT, MRI, PET/SPECT, ultrasound and optical imaging. Among various topics, sparse-view CT remains a challenge which targets a decent image reconstruction from very few projections. To address this challenge, in this article we propose a Dual-domain Residual-based Optimization NEtwork (DRONE). DRONE consists of three modules respectively for embedding, refinement, and awareness. In the embedding module, a sparse sinogram is first extended. Then, sparse-view artifacts are effectively suppressed in the image domain. After that, the refinement module recovers image details in the residual data and image domains synergistically. Finally, the results from the embedding and refinement modules in the data and image domains are regularized for optimized image quality in the awareness module, which ensures the consistency between measurements and images with the kernel awareness of compressed sensing. The DRONE network is trained, validated, and tested on preclinical and clinical datasets, demonstrating its merits in edge preservation, feature recovery, and reconstruction accuracy.
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Liu J, Kang Y, Qiang J, Wang Y, Hu D, Chen Y. Low-dose CT imaging via cascaded ResUnet with spectrum loss. Methods 2021; 202:78-87. [PMID: 33992773 DOI: 10.1016/j.ymeth.2021.05.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2020] [Revised: 04/07/2021] [Accepted: 05/10/2021] [Indexed: 11/29/2022] Open
Abstract
The suppression of artifact noise in computed tomography (CT) with a low-dose scan protocol is challenging. Conventional statistical iterative algorithms can improve reconstruction but cannot substantially eliminate large streaks and strong noise elements. In this paper, we present a 3D cascaded ResUnet neural network (Ca-ResUnet) strategy with modified noise power spectrum loss for reducing artifact noise in low-dose CT imaging. The imaging workflow consists of four components. The first component is filtered backprojection (FBP) reconstruction via a domain transformation module for suppressing artifact noise. The second is a ResUnet neural network that operates on the CT image. The third is an image compensation module that compensates for the loss of tiny structures, and the last is a second ResUnet neural network with modified spectrum loss for fine-tuning the reconstructed image. Verification results based on American Association of Physicists in Medicine (AAPM) and United Image Healthcare (UIH) datasets confirm that the proposed strategy significantly reduces serious artifact noise while retaining desired structures.
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Affiliation(s)
- Jin Liu
- College of Computer and Information, Anhui Polytechnic University, Wuhu, China; Key Laboratory of Computer Network and Information Integration (Southeast University) Ministry of Education Nanjing, China.
| | - Yanqin Kang
- College of Computer and Information, Anhui Polytechnic University, Wuhu, China; Key Laboratory of Computer Network and Information Integration (Southeast University) Ministry of Education Nanjing, China
| | - Jun Qiang
- College of Computer and Information, Anhui Polytechnic University, Wuhu, China
| | - Yong Wang
- College of Computer and Information, Anhui Polytechnic University, Wuhu, China
| | - Dianlin Hu
- Key Laboratory of Computer Network and Information Integration (Southeast University) Ministry of Education Nanjing, China; School of Cyber Science and Engineering, Southeast University, Nanjing, China; School of Computer Science and Engineering, Southeast University, Nanjing, China
| | - Yang Chen
- Key Laboratory of Computer Network and Information Integration (Southeast University) Ministry of Education Nanjing, China; School of Cyber Science and Engineering, Southeast University, Nanjing, China; School of Computer Science and Engineering, Southeast University, Nanjing, China
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