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Chen X, Liang L, Fu S, Bao X, Gu S, Jiao Y, Hu F, Rahman A, Li Q. Distribution characteristics of reactive silicon in six water bodies in the Yangtze River Basin in China. ENVIRONMENTAL RESEARCH 2024; 249:118424. [PMID: 38325775 DOI: 10.1016/j.envres.2024.118424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 01/29/2024] [Accepted: 02/02/2024] [Indexed: 02/09/2024]
Abstract
Terrestrial silicon (Si) from biogeochemically weathered rocks and soils into oceans must pass through several water bodies, resulting in some Si immobilized. Hence, the knowledge on Si distribution characteristics in different water bodies at a basin scale is helpful to understand Si immobilization. A total of 65 surface sediments and corresponding overlying water samples were sampled from six water bodies (Dianchi Lake, DL; Dadu River, DR; Tuojiang River, TR; Honghu Lake, HL; Donghu Lake, DhL; Taihu Lake, TL) in the Yangtze River Basin of China, total dissolved Si (TDSi) in overlying water and exchangeable Si (Ex-Si), active non-biogenic Si (NBSi), and total acid dissolved Si (TADSi) in sediments were analyzed. Water chemical parameters (pH, EC, and TDP) and sediment components (LOI, TN, TP, and TADFe) showed that the water environment characteristics of six water bodies differed. TDSi differed among regions and between lakes and rivers, significantly higher in water bodies in the upper reaches and rivers than the middle or lower reaches and lakes (p < 0.05), respectively. Ex-Si in sediments in the upper reaches was significantly higher than in the middle or lower reaches (p < 0.05), except for DhL, whose Ex-Si was the highest. Mean TADSi and active NBSi were significantly higher in lakes than rivers (p < 0.05). Oxidation of sediments significantly increased TDSi in overlying water and active NBSi in sediments (p < 0.01). Si forms in six water bodies significantly depended on components of the sediments (e.g. active Ca2+, Mg2+, Fe, and Al3+) and water chemical parameters (p < 0.05). Our results suggest that immobilization of Si in water bodies in the Yangtze River Basin depends on the types of water bodies and sediments, lakes and Fe-Al dominated sediments have a high potential to immobilize Si, but anthropogenic interference should not be ignored.
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Affiliation(s)
- Xuemei Chen
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Lanwei Liang
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China; School of Environment Studies, China University of Geosciences, Wuhan, Hubei, 430074, China
| | - Songjie Fu
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China; School of Environment Studies, China University of Geosciences, Wuhan, Hubei, 430074, China
| | - Xu Bao
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Sen Gu
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
| | - Yang Jiao
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China
| | - Fang Hu
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China; School of Environment Studies, China University of Geosciences, Wuhan, Hubei, 430074, China
| | - Abdur Rahman
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Qingman Li
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China.
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Viswanathan SP, Njazhakunnathu GV, Neelamury SP, Padmakumar B, Ambatt TP. Invasive Wetland Weeds Derived Biochar Properties Affecting Soil Carbon Dynamics of South Indian Tropical Ultisol. ENVIRONMENTAL MANAGEMENT 2023; 72:343-362. [PMID: 36752870 DOI: 10.1007/s00267-023-01791-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Accepted: 01/25/2023] [Indexed: 06/18/2023]
Abstract
This study aimed to: (i) investigate the agronomic properties of biochars derived from selected invasive wetland weeds and (ii) examine the effect of biochar on soil organic carbon (SOC) dynamics and stability of tropical Ultisol soil. The biochars were analyzed for proximate properties, surface characteristics, elemental composition, functional groups, and thermal and carbon stability. Plant growth studies supplemented with biochar under greenhouse conditions for 1 year were conducted. The SOC, its fractions, and its dynamics were studied. The biochar incorporation significantly increased the SOC and its stable fractions like mineral Organic Carbon (MOC), fine-particulate organic carbon (fPOC), and Non-labile Carbon (NLC) by 24.54-7.82, 5.79-2.0, and 9.50-2.16 g kg-1 than control. The labile carbon fractions like Dissolved Organic Carbon (DOC), and coarse-Particulate Organic Carbon (cPOC) showed a substantial reduction by 0.72-0.26 and 2.92-1.29 g kg-1 respectively. However, the easily oxidizable carbon (EOC) and microbial biomass carbon (MBC) content increased by 2.10-4.87 g kg-1 and 28.33-158.55 mg kg-1 respectively. The addition of biochars resulted in the stabilization of soil aggregates. Likewise, substantial CO2 emission reduction (75.24-46.60%) has been achieved during the trials. The carbon pool management index (CPMI) values recorded a substantial increase of 40-7.2% between the trials. The findings imply that the inherent nature of weed biomasses determines the characteristics of the resulting biochar, and their application significantly influenced the carbon dynamics of the tropical Ultisol soil.
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Affiliation(s)
- Shanthi Prabha Viswanathan
- Advanced Centre of Environmental Studies and Sustainable Development, School of Environmental Sciences, Mahatma Gandhi University, Kottayam, 686560, Kerala, India.
| | - Gopika Vijayakumar Njazhakunnathu
- Advanced Centre of Environmental Studies and Sustainable Development, School of Environmental Sciences, Mahatma Gandhi University, Kottayam, 686560, Kerala, India
| | - Sreekanth Prakasan Neelamury
- Advanced Centre of Environmental Studies and Sustainable Development, School of Environmental Sciences, Mahatma Gandhi University, Kottayam, 686560, Kerala, India
| | - Babu Padmakumar
- Advanced Centre of Environmental Studies and Sustainable Development, School of Environmental Sciences, Mahatma Gandhi University, Kottayam, 686560, Kerala, India
| | - Thomas Paili Ambatt
- Advanced Centre of Environmental Studies and Sustainable Development, School of Environmental Sciences, Mahatma Gandhi University, Kottayam, 686560, Kerala, India
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de Tombeur F, Raven JA, Toussaint A, Lambers H, Cooke J, Hartley SE, Johnson SN, Coq S, Katz O, Schaller J, Violle C. Why do plants silicify? Trends Ecol Evol 2023; 38:275-288. [PMID: 36428125 DOI: 10.1016/j.tree.2022.11.002] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 10/30/2022] [Accepted: 11/02/2022] [Indexed: 11/24/2022]
Abstract
Despite seminal papers that stress the significance of silicon (Si) in plant biology and ecology, most studies focus on manipulations of Si supply and mitigation of stresses. The ecological significance of Si varies with different levels of biological organization, and remains hard to capture. We show that the costs of Si accumulation are greater than is currently acknowledged, and discuss potential links between Si and fitness components (growth, survival, reproduction), environment, and ecosystem functioning. We suggest that Si is more important in trait-based ecology than is currently recognized. Si potentially plays a significant role in many aspects of plant ecology, but knowledge gaps prevent us from understanding its possible contribution to the success of some clades and the expansion of specific biomes.
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Affiliation(s)
- Félix de Tombeur
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France; School of Biological Sciences and Institute of Agriculture, The University of Western Australia, Perth, Australia.
| | - John A Raven
- Division of Plant Science, University of Dundee at the James Hutton Institute, Invergowrie, UK; School of Biological Sciences, The University of Western Australia, Perth, Australia; Climate Change Cluster, Faculty of Science, University of Technology Sydney, Ultimo, Australia
| | - Aurèle Toussaint
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Hans Lambers
- School of Biological Sciences and Institute of Agriculture, The University of Western Australia, Perth, Australia
| | - Julia Cooke
- School of Environment, Earth and Ecosystem Sciences, The Open University, Milton Keynes, UK
| | - Sue E Hartley
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK
| | - Scott N Johnson
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, Australia
| | - Sylvain Coq
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Ofir Katz
- Dead Sea and Arava Science Center, Mount Masada, Tamar Regional Council, Israel; Eilat Campus, Ben-Gurion University of the Negev, Eilat, Israel
| | - Jörg Schaller
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany
| | - Cyrille Violle
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
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Bulk Drag Predictions of Riparian Arundo donax Stands through UAV-Acquired Multispectral Images. WATER 2021. [DOI: 10.3390/w13101333] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Estimating the main hydrodynamic features of real vegetated water bodies is crucial to assure a balance between their hydraulic conveyance and environmental quality. Riparian vegetation stands have a high impact on vegetated channels. The present work has the aim to integrate riparian vegetation’s reflectance indices and hydrodynamics of real vegetated water flows to assess the impact of riparian vegetation morphometry on bulk drag coefficients distribution along an abandoned vegetated drainage channel fully covered by 9–10 m high Arundo donax (commonly known as giant reed) stands, starting from flow average velocities measurements at 30 cross-sections identified along the channel. A map of riparian vegetation cover was obtained through digital processing of Unnamed Aerial Vehicle (UAV)-acquired multispectral images, which represent a fast way to observe riparian plants’ traits in hardly accessible areas such as vegetated water bodies in natural conditions. In this study, the portion of riparian plants effectively interacting with flow was expressed in terms of ground-based Leaf Area Index measurements (LAI), which easily related to UAV-based Normalized Difference Vegetation Index (NDVI). The comparative analysis between Arundo donax stands NDVI and LAI map enabled the analysis of the impact of UAV-acquired multispectral imagery on bulk drag predictions along the vegetated drainage channel.
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Katz O, Puppe D, Kaczorek D, Prakash NB, Schaller J. Silicon in the Soil-Plant Continuum: Intricate Feedback Mechanisms within Ecosystems. PLANTS (BASEL, SWITZERLAND) 2021; 10:652. [PMID: 33808069 PMCID: PMC8066056 DOI: 10.3390/plants10040652] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2021] [Revised: 03/22/2021] [Accepted: 03/26/2021] [Indexed: 11/28/2022]
Abstract
Plants' ability to take up silicon from the soil, accumulate it within their tissues and then reincorporate it into the soil through litter creates an intricate network of feedback mechanisms in ecosystems. Here, we provide a concise review of silicon's roles in soil chemistry and physics and in plant physiology and ecology, focusing on the processes that form these feedback mechanisms. Through this review and analysis, we demonstrate how this feedback network drives ecosystem processes and affects ecosystem functioning. Consequently, we show that Si uptake and accumulation by plants is involved in several ecosystem services like soil appropriation, biomass supply, and carbon sequestration. Considering the demand for food of an increasing global population and the challenges of climate change, a detailed understanding of the underlying processes of these ecosystem services is of prime importance. Silicon and its role in ecosystem functioning and services thus should be the main focus of future research.
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Affiliation(s)
- Ofir Katz
- Dead Sea and Arava Science Center, Mt. Masada, Tamar Regional Council, 86910 Tamar, Israel
- Eilat Campus, Ben-Gurion University of the Negev, Hatmarim Blv, 8855630 Eilat, Israel
| | - Daniel Puppe
- Leibniz Centre for Agricultural Landscape Research (ZALF), 15374 Müncheberg, Germany; (D.P.); (D.K.); (J.S.)
| | - Danuta Kaczorek
- Leibniz Centre for Agricultural Landscape Research (ZALF), 15374 Müncheberg, Germany; (D.P.); (D.K.); (J.S.)
- Department of Soil Environment Sciences, Warsaw University of Life Sciences (SGGW), 02776 Warsaw, Poland
| | - Nagabovanalli B. Prakash
- Department of Soil Science and Agricultural Chemistry, University of Agricultural Sciences, GKVK, Bangalore 560065, India;
| | - Jörg Schaller
- Leibniz Centre for Agricultural Landscape Research (ZALF), 15374 Müncheberg, Germany; (D.P.); (D.K.); (J.S.)
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Putra R, Powell JR, Hartley SE, Johnson SN. Is it time to include legumes in plant silicon research? Funct Ecol 2020. [DOI: 10.1111/1365-2435.13565] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Rocky Putra
- Hawkesbury Institute for the Environment Western Sydney University Penrith NSW Australia
| | - Jeff R. Powell
- Hawkesbury Institute for the Environment Western Sydney University Penrith NSW Australia
| | - Susan E. Hartley
- York Environmental Sustainability Institute, Department of Biology University of York York UK
| | - Scott N. Johnson
- Hawkesbury Institute for the Environment Western Sydney University Penrith NSW Australia
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Silicon and Plant-Animal Interactions: Towards an Evolutionary Framework. PLANTS 2020; 9:plants9040430. [PMID: 32244583 PMCID: PMC7238073 DOI: 10.3390/plants9040430] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 02/26/2020] [Revised: 03/19/2020] [Accepted: 03/20/2020] [Indexed: 12/16/2022]
Abstract
Herbivory is fundamental in ecology, being a major driver of ecosystem structure and functioning. Plant Si and phytoliths play a significant antiherbivory role, the understanding of which and of its evolutionary context will increase our understanding of this phenomenon, its origins, and its significance for past, extant, and future ecosystems. To achieve this goal, we need a superdisciplinary evolutionary framework connecting the role of Si in plant–herbivore interactions, in global processes, and in plant and herbivore evolution. To do this properly, we should acknowledge and incorporate into our work some basic facts that are too often overlooked. First, there is great taxonomic variance both in plant Si contents, forms, and roles, but also in herbivore responses, dietary preferences, and in fossil evidence. Second, species and their traits, as well as whole ecosystems, should be seen in the context of their entire evolutionary history and may therefore reflect not only adaptations to extant selective factors but also anachronistic traits. Third, evolutionary history and evolutionary transitions are complex, resulting in true and apparent asynchronisms. Fourth, evolution and ecology are multiscalar, in which various phenomena and processes act at various scales. Taking these issues into consideration will improve our ability to develop this needed theoretical framework and will bring us closer to gaining a more complete understanding of one of the most exciting and elusive phenomena in plant biology and ecology.
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Silica Storage, Fluxes, and Nutrient Stoichiometry in Different Benthic Primary Producer Communities in the Littoral Zone of a Deep Subalpine Lake (Lake Iseo, Italy). WATER 2019. [DOI: 10.3390/w11102140] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Benthic vegetation at the land-water interface is recognized as a filter for silica fluxes, which represents an important but under-investigated subject. This paper aims to analyze stocks and fluxes of biogenic (BSi) and dissolved (DSi) silica in relation to nitrogen (N) and phosphorus (P) in the littoral zone of a deep lake. Specifically, we evaluated how different primary producers can influence BSi retention and DSi release. The study was performed from April to October in 2017, in three different benthic communities: submerged aquatic vegetation (SAV) and microphytobenthos (MPB), both occurring in soft bottom sediments, and epilithic macro- and microalgae (EA) on rocky substrates. The main result was that SAV and MPB were a DSi source and a N and P sink with the DSi efflux from SAV nearly three times as much as in MPB patches. These findings corroborate the hypothesis that SAV mediates the DSi transport from pore water to the water column. Conversely, EA communities were a DSi sink and a N and P source. Overall, these results highlight the fact that the littoral zone of lakes plays a key role in regulating aquatic Si cycling, which is likely to depend on the health status of SAV communities.
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Gao H, Zhai S, Sun Z, Liu J, Tong C. Differences in biomass and silica content in typical plant communities with ecotones in the Min River estuary of southeast China. PeerJ 2019; 7:e7218. [PMID: 31367481 PMCID: PMC6657677 DOI: 10.7717/peerj.7218] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Accepted: 05/31/2019] [Indexed: 11/20/2022] Open
Abstract
Silica (Si) is a basic nutrient requirement for many aquatic organisms and its biogeochemical cycle plays an important role in estuarine coastal ecosystems. However, little is known about the role Si plays during plant–plant interactive processes in the marsh ecosystems. Here, variations in biomass, biogenic silica (BSi) content, and available Si content of Cyperus malaccensis-dominated marshes, Phragmites australis-dominated marshes, and their ecotonal marshes were studied in the Shanyutan marsh in the Min River estuary, China. Results showed that C. malaccensis and P. australis biomass in ecotones was lower than those in typical communities by 46.4% and 46.3%, respectively. BSi content in aboveground organs of C. malaccensis and culms and roots of P. australis was lower in ecotones than in typical communities, whereas BSi content in other organs showed the opposite trend. Biomass allocation in C. malaccensis and P. australis roots in ecotones was higher by 56.9% and 19.5%, respectively, and BSi stock in C. malaccensis and P. australis roots was higher than that in typical communities by 120.9% and 18.9%, respectively. Available Si content in ecotonal marsh soils was 12.6% greater than that in typical communities. Thus, the two plant species may use different strategies for Si accumulation and allocation in ecotones to adapt to the competitive environment. P. australis may expand primarily via occupation of wider aboveground space, thereby increasing the Si accumulation capacity in aboveground organs. Meanwhile, C. malaccensis may increase the Si allocation capacity of its roots to withstand the pressure from P. australis. This study will provide new insights into marsh plant competition from the perspective of Si, which can also benefit plant management in marsh ecosystems.
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Affiliation(s)
- Hui Gao
- School of Geographical Sciences, Key Laboratory of Humid Subtropical Eco-geographical Process, Ministry of Education, Fujian Normal University, Fuzhou, China
| | - Shuijing Zhai
- School of Geographical Sciences, Key Laboratory of Humid Subtropical Eco-geographical Process, Ministry of Education, Fujian Normal University, Fuzhou, China
| | - Zhigao Sun
- School of Geographical Sciences, Key Laboratory of Humid Subtropical Eco-geographical Process, Ministry of Education, Fujian Normal University, Fuzhou, China
| | - Juan Liu
- Innovation Center and Key Laboratory of Water Quality and Reservation in the Pearl River Delta, Institute of Environmental Research At Greater Bay, School of Environmental Science and Engineering, Guangzhou University, Guangzhou, China
| | - Chuan Tong
- School of Geographical Sciences, Key Laboratory of Humid Subtropical Eco-geographical Process, Ministry of Education, Fujian Normal University, Fuzhou, China
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Katz O. Plant Silicon and Phytolith Research and the Earth-Life Superdiscipline. FRONTIERS IN PLANT SCIENCE 2018; 9:1281. [PMID: 30233622 PMCID: PMC6134949 DOI: 10.3389/fpls.2018.01281] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Accepted: 08/15/2018] [Indexed: 05/29/2023]
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Vonk JA, Smulders FOH, Christianen MJA, Govers LL. Seagrass leaf element content: A global overview. MARINE POLLUTION BULLETIN 2018; 134:123-133. [PMID: 28986112 DOI: 10.1016/j.marpolbul.2017.09.066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2017] [Revised: 08/21/2017] [Accepted: 09/27/2017] [Indexed: 06/07/2023]
Abstract
Knowledge on the role of seagrass leaf elements and in particular micronutrients and their ranges is limited. We present a global database, consisting of 1126 unique leaf values for ten elements, obtained from literature and unpublished data, spanning 25 different seagrass species from 28 countries. The overall order of average element values in seagrass leaves was Na>K>Ca>Mg>S>Fe>Al>Si>Mn>Zn. Although we observed differences in leaf element content between seagrass families, high intraspecific variation indicated that leaf element content was more strongly determined by environmental factors than by evolutionary history. Early successional species had high leaf Al and Fe content. In addition, seagrass leaf element content also showed correlations with macronutrients (N and P), indicating that productivity also depends on other elements. Expected genomes of additional seagrass species in combination with experiments manipulating (micro)nutrients and environmental drivers might enable us to unravel the importance of various elements to sustain productive and flourishing meadows.
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Affiliation(s)
- J Arie Vonk
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, The Netherlands.
| | - Fee O H Smulders
- Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, The Netherlands
| | - Marjolijn J A Christianen
- Marine Evolution and Conservation, Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, The Netherlands
| | - Laura L Govers
- Conservation Ecology Group, Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, The Netherlands; Department of Aquatic Ecology and Environmental Biology, Institute for Water and Wetland Research (IWWR), Radboud University Nijmegen, The Netherlands
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12
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魏 高. Research Advances in Wetland Plants Dieback Induced by Eutrophication. INTERNATIONAL JOURNAL OF ECOLOGY 2018. [DOI: 10.12677/ije.2018.73020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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13
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Shivaraj SM, Deshmukh R, Bhat JA, Sonah H, Bélanger RR. Understanding Aquaporin Transport System in Eelgrass ( Zostera marina L.), an Aquatic Plant Species. FRONTIERS IN PLANT SCIENCE 2017; 8:1334. [PMID: 28824671 PMCID: PMC5541012 DOI: 10.3389/fpls.2017.01334] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2017] [Accepted: 07/17/2017] [Indexed: 05/14/2023]
Abstract
Aquaporins (AQPs) are a class of integral membrane proteins involved in the transport of water and many other small solutes. The AQPs have been extensively studied in many land species obtaining water and nutrients from the soil, but their distribution and evolution have never been investigated in aquatic plant species, where solute assimilation is mostly through the leaves. In this regard, identification of AQPs in the genome of Zostera marina L. (eelgrass), an aquatic ecological model species could reveal important differences underlying solute uptake between land and aquatic species. In the present study, genome-wide analysis led to the identification of 25 AQPs belonging to four subfamilies, plasma membrane intrinsic proteins (PIPs), tonoplast intrinsic proteins (TIPs), nodulin 26-like intrinsic proteins (NIPs), small basic intrinsic proteins (SIPs) in eelgrass. As in other monocots, the XIP subfamily was found to be absent from the eelgrass genome. Further classification of subfamilies revealed a unique distribution pattern, namely the loss of the NIP2 (NIP-III) subgroup, which is known for silicon (Si) transport activity and ubiquitously present in monocot species. This finding has great importance, since the eelgrass population stability in natural niche is reported to be associated with Si concentrations in water. In addition, analysis of available RNA-seq data showed evidence of expression in 24 out of the 25 AQPs across four different tissues such as root, vegetative tissue, male flower and female flower. In contrast to land plants, higher expression of PIPs was observed in shoot compared to root tissues. This is likely explained by the unique plant architecture of eelgrass where most of the nutrients and water are absorbed by shoot rather than root tissues. Similarly, higher expression of the TIP1 and TIP5 families was observed specifically in male flowers suggesting a role in pollen maturation. This genome-wide analysis of AQP distribution, evolution and expression dynamics can find relevance in understanding the adaptation of aquatic and land species to their respective environments.
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Affiliation(s)
- S. M. Shivaraj
- National Research Centre on Plant BiotechnologyNew Delhi, India
| | - Rupesh Deshmukh
- Département de Phytologie–Faculté des Sciences de l’Agriculture et de l’Alimentation, Université Laval, QuébecQC, Canada
| | - Javaid A. Bhat
- Department of Genetics and Plant Breeding, The Indian Agricultural Research InstituteNew Delhi, India
| | - Humira Sonah
- Département de Phytologie–Faculté des Sciences de l’Agriculture et de l’Alimentation, Université Laval, QuébecQC, Canada
| | - Richard R. Bélanger
- Département de Phytologie–Faculté des Sciences de l’Agriculture et de l’Alimentation, Université Laval, QuébecQC, Canada
- *Correspondence: Richard R. Bélanger,
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14
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Cooke J, DeGabriel JL, Hartley SE. The functional ecology of plant silicon: geoscience to genes. Funct Ecol 2016. [DOI: 10.1111/1365-2435.12711] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Julia Cooke
- Department of Earth, Environment and Ecosystems The Open University Walton Hall Milton Keynes MK7 6AA UK
| | - Jane L. DeGabriel
- Hawkesbury Institute for the Environment Western Sydney University Locked Bag 1797 Penrith New South Wales 2751 Australia
| | - Susan E. Hartley
- Department of Biology York Environmental Sustainability Institute University of York Heslington York YO10 5DD UK
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