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Inchauregui RA, Tallapragada K, Parker BJ. Aphid facultative symbionts confer no protection against the fungal entomopathogen Batkoa apiculata. PLoS One 2023; 18:e0286095. [PMID: 37205695 DOI: 10.1371/journal.pone.0286095] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2023] [Accepted: 05/08/2023] [Indexed: 05/21/2023] Open
Abstract
Fungi in the family Entomophthoraceae are prevalent pathogens of aphids. Facultative symbiotic bacteria harbored by aphids, including Spiroplasma sp. and Regiella insecticola, have been shown to make their hosts more resistant to infection with the fungal pathogen Pandora neoaphidis. How far this protection extends against other species of fungi in the family Entomophthoraceae is unknown. Here we isolated a strain of the fungal pathogen Batkoa apiculata infecting a natural population of pea aphids (Acyrthosiphon pisum) and confirmed its identity by sequencing the 28S rRNA gene. We then infected a panel of aphids each harboring a different species or strain of endosymbiotic bacteria to test whether aphid symbionts protect against B. apiculata. We found no evidence of symbiont-mediated protection against this pathogen, and our data suggest that some symbionts make aphids more susceptible to infection. This finding is relevant to our understanding of this important model of host-microbe interactions, and we discuss our results in the context of aphid-microbe ecological and evolutionary dynamics.
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Affiliation(s)
- Rose A Inchauregui
- Department of Microbiology, University of Tennessee Knoxville, Knoxville, TN, United States of America
- Department of Biological Sciences, Indiana University South Bend, South Bend, IN, United States of America
| | - Keertana Tallapragada
- Department of Microbiology, University of Tennessee Knoxville, Knoxville, TN, United States of America
- UT-ORNL Graduate School of Genome Science and Technology, University of Tennessee Knoxville, Knoxville, TN, United States of America
| | - Benjamin J Parker
- Department of Microbiology, University of Tennessee Knoxville, Knoxville, TN, United States of America
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Fight or Flight? Alternative Defense of the Pea Aphids, Acyrthosiphon pisum on Different Host Plants. INSECTS 2021; 12:insects12070614. [PMID: 34357273 PMCID: PMC8306235 DOI: 10.3390/insects12070614] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/15/2021] [Revised: 07/01/2021] [Accepted: 07/02/2021] [Indexed: 11/19/2022]
Abstract
Simple Summary In the event of a pathogen attack, fecundity compensation and production of winged offspring are critical in pea aphids. However, little is known about the effects of the host plant on these responses. The purpose of this study was to investigate the effects of host plant on these two alternative defenses in pea aphids. We took a single adult female from a pink colony of pea aphids that was originally from broad beans and allowed her to reproduce offspring in the laboratory. Some offspring were fed broad beans, while others were fed alfalfa for over 30 generations. We first investigated the backgrounds of their facultative symbionts before infecting them with pathogens and found that the composition of secondary symbionts in our aphid colony was not affected by the host plants. Broad bean reared pea aphids produced more offspring in infected and uninfected conditions, whereas alfalfa reared pea aphids produced more winged offspring when confronting challenges caused by Staphylococcus aureus and Beauveria bassiana. Our findings showed that the host plant influences the pea aphid’s alternative responses to mortality risks. Abstract Non-immunological responses are important alternative strategies for animals to deal with pathogens. It has long been recognized that fecundity compensation and production of winged offspring are two common non-immunological responses used by aphids when confronted with predators or pathogens. However, the effects of host plant on these responses have received little attention. This study investigated the effects of host plant on non-immunological defense in the pea aphids, Acyrthosiphon pisum, after bacterial and fungal infections. The aphids were raised in two groups, with one group being raised on broad beans and the other group being raised on alfalfa. The secondary symbiont background was examined, and the aphids were then infected with bacteria and fungus to assess fecundity and winged offspring production. We found that aphids that had been fed alfalfa had fewer offspring than those fed broad beans. Alfalfa-fed aphids produced more winged offspring in response to S. aureus and B. bassiana infections. Our findings suggest that the host plant plays a key role in fecundity and winged offspring production in pea aphid colony.
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Intraspecific variation in immune gene expression and heritable symbiont density. PLoS Pathog 2021; 17:e1009552. [PMID: 33901257 PMCID: PMC8102006 DOI: 10.1371/journal.ppat.1009552] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 05/06/2021] [Accepted: 04/09/2021] [Indexed: 12/21/2022] Open
Abstract
Host genetic variation plays an important role in the structure and function of heritable microbial communities. Recent studies have shown that insects use immune mechanisms to regulate heritable symbionts. Here we test the hypothesis that variation in symbiont density among hosts is linked to intraspecific differences in the immune response to harboring symbionts. We show that pea aphids (Acyrthosiphon pisum) harboring the bacterial endosymbiont Regiella insecticola (but not all other species of symbionts) downregulate expression of key immune genes. We then functionally link immune expression with symbiont density using RNAi. The pea aphid species complex is comprised of multiple reproductively-isolated host plant-adapted populations. These ‘biotypes’ have distinct patterns of symbiont infections: for example, aphids from the Trifolium biotype are strongly associated with Regiella. Using RNAseq, we compare patterns of gene expression in response to Regiella in aphid genotypes from multiple biotypes, and we show that Trifolium aphids experience no downregulation of immune gene expression while hosting Regiella and harbor symbionts at lower densities. Using F1 hybrids between two biotypes, we find that symbiont density and immune gene expression are both intermediate in hybrids. We propose that in this system, Regiella symbionts are suppressing aphid immune mechanisms to increase their density, but that some hosts have adapted to prevent immune suppression in order to control symbiont numbers. This work therefore suggests that antagonistic coevolution can play a role in host-microbe interactions even when symbionts are transmitted vertically and provide a clear benefit to their hosts. The specific immune mechanisms that we find are downregulated in the presence of Regiella have been previously shown to combat pathogens in aphids, and thus this work also highlights the immune system’s complex dual role in interacting with both beneficial and harmful microbes. Insects frequently form beneficial partnerships with heritable microbes that are passed from mothers to offspring. Natural populations exhibit a great deal of variation in the frequency of heritable microbes and in the within-host density of these infections. Uncovering the mechanisms underlying variation in host-microbe interactions is key to understanding how they evolve. We study a model host-microbe interaction: the pea aphid and a heritable bacterium that makes aphids resistant to fungal pathogens. We show that aphids harboring bacteria show sharply reduced expression of innate immune system genes, and that this leads to increased densities of symbionts. We further show that populations of aphids that live on different species of plants vary in differential immune gene expression and in the density of their symbiont infections. This study contributes to our mechanistic understanding of an important model of host-microbe symbiosis and suggests that hosts and heritable microbes are evolving antagonistically. This work also sheds light on how invertebrate immune systems evolve to manage the complex task of combatting harmful pathogens while accommodating potentially beneficial microbes.
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Parker BJ, Driscoll RMH, Grantham ME, Hrcek J, Brisson JA. Wing plasticity and associated gene expression varies across the pea aphid biotype complex. Evolution 2021; 75:1143-1149. [PMID: 33527425 DOI: 10.1111/evo.14174] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Accepted: 01/11/2021] [Indexed: 12/12/2022]
Abstract
Developmental phenotypic plasticity is a widespread phenomenon that allows organisms to produce different adult phenotypes in response to different environments. Investigating the molecular mechanisms underlying plasticity has the potential to reveal the precise changes that lead to the evolution of plasticity as a phenotype. Here, we study wing plasticity in multiple host-plant adapted populations of pea aphids as a model for understanding adaptation to different environments within a single species. We describe the wing plasticity response of different "biotypes" to a crowded environment and find differences within as well as among biotypes. We then use transcriptome profiling to compare a highly plastic pea aphid genotype to one that shows no plasticity and find that the latter exhibits no gene expression differences between environments. We conclude that the loss of plasticity has been accompanied by a loss of differential gene expression and therefore that genetic assimilation has occurred. Our gene expression results generalize previous studies that have shown a correlation between plasticity in morphology and gene expression.
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Affiliation(s)
- Benjamin J Parker
- Department of Biology, University of Rochester, Rochester, NY, 14627, USA.,Department of Zoology, University of Oxford, Oxford, OX13PS, UK.,Department of Microbiology, University of Tennessee, Knoxville, TN, 37916, USA
| | - Rose M H Driscoll
- Department of Biology, University of Rochester, Rochester, NY, 14627, USA
| | - Mary E Grantham
- Department of Biology, University of Rochester, Rochester, NY, 14627, USA
| | - Jan Hrcek
- Department of Zoology, University of Oxford, Oxford, OX13PS, UK.,Czech Academy of Sciences, Biology Centre, Institute of Entomology, Branisovska 31, Ceske Budejovice, 37005, Czech Republic
| | - Jennifer A Brisson
- Department of Biology, University of Rochester, Rochester, NY, 14627, USA
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5
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McLean AHC, Parker BJ. Variation in intrinsic resistance of pea aphids to parasitoid wasps: A transcriptomic basis. PLoS One 2020; 15:e0242159. [PMID: 33206703 PMCID: PMC7673541 DOI: 10.1371/journal.pone.0242159] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 10/27/2020] [Indexed: 12/28/2022] Open
Abstract
Evolutionary interactions between parasitoid wasps and insect hosts have been well studied at the organismal level, but little is known about the molecular mechanisms that insects use to resist wasp parasitism. Here we study the interaction between a braconid wasp (Aphidius ervi) and its pea aphid host (Acyrthosiphon pisum). We first identify variation in resistance to wasp parasitism that can be attributed to aphid genotype. We then use transcriptome sequencing to identify genes in the aphid genome that are differentially expressed at an early stage of parasitism, and we compare these patterns in highly resistant and susceptible aphid host lines. We find that resistant genotypes are upregulating genes involved in carbohydrate metabolism and several key innate immune system genes in response to parasitism, but that this response seems to be weaker in susceptible aphid genotypes. Together, our results provide a first look into the complex molecular mechanisms that underlie aphid resistance to wasp parasitism and contribute to a broader understanding of how resistance mechanisms evolve in natural populations.
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Affiliation(s)
| | - Benjamin J. Parker
- Department of Microbiology, University of Tennessee, Knoxville, TN, United States of America
- * E-mail:
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Rynkiewicz EC, Clerc M, Babayan SA, Pedersen AB. Variation in Local and Systemic Pro-Inflammatory Immune Markers of Wild Wood Mice after Anthelmintic Treatment. Integr Comp Biol 2020; 59:1190-1202. [PMID: 31368489 PMCID: PMC6863754 DOI: 10.1093/icb/icz136] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
The immune system represents a host's main defense against infection to parasites and pathogens. In the wild, a host's response to immune challenges can vary due to physiological condition, demography (age, sex), and coinfection by other parasites or pathogens. These sources of variation, which are intrinsic to natural populations, can significantly impact the strength and type of immune responses elicited after parasite exposure and infection. Importantly, but often neglected, a host's immune response can also vary within the individual, across tissues and between local and systemic scales. Consequently, how a host responds at each scale may impact its susceptibility to concurrent and subsequent infections. Here we analyzed how characteristics of hosts and their parasite infections drive variation in the pro-inflammatory immune response in wild wood mice (Apodemus sylvaticus) at both the local and systemic scale by experimentally manipulating within-host parasite communities through anthelmintic drug treatment. We measured concentrations of the pro-inflammatory cytokine tumor necrosis factor alpha (TNF-α) produced in vitro in response to a panel of toll-like receptor agonists at the local (mesenteric lymph nodes [MLNs]) and systemic (spleen) scales of individuals naturally infected with two gastrointestinal parasites, the nematode Heligmosomoides polygyrus and the protozoan Eimeria hungaryensis. Anthelmintic-treated mice had a 20-fold lower worm burden compared to control mice, as well as a four-fold higher intensity of the non-drug targeted parasite E. hungaryensis. Anthelmintic treatment differentially impacted levels of TNF-α expression in males and females at the systemic and local scales, with treated males producing higher, and treated females lower, levels of TNF-α, compared to control mice. Also, TNF-α was affected by host age, at the local scale, with MLN cells of young, treated mice producing higher levels of TNF-α than those of old, treated mice. Using complementary, but distinct, measures of inflammation measured across within-host scales allowed us to better assess the wood mouse immune response to changes in parasite infection dynamics after anthelmintic treatment. This same approach could be used to understand helminth infections and responses to parasite control measures in other systems in order to gain a broader view of how variation impacts the immune response.
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Affiliation(s)
- Evelyn C Rynkiewicz
- Fashion Institute of Technology, State University of New York, New York, NY 10001, USA
| | - Melanie Clerc
- MRC Centre for Inflammation Research, The Queen's Medical Research Institute, University of Edinburgh, EH16 4TJ, UK
| | - Simon A Babayan
- Institute of Biodiversity, Animal Health & Comparative Medicine, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Amy B Pedersen
- Institute of Evolutionary Biology and Centre for Immunity, Infection and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3FL, UK
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Saussure S, Westrum K, Roer Hjelkrem AG, Klingen I. Effect of three isolates of Pandora neoaphidis from a single population of Sitobion avenae on mortality, speed of kill and fecundity of S. avenae and Rhopalosiphum padi at different temperatures. FUNGAL ECOL 2019. [DOI: 10.1016/j.funeco.2019.03.004] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Vinterstare J, Hegemann A, Nilsson PA, Hulthén K, Brönmark C. Defence versus defence: Are crucian carp trading off immune function against predator‐induced morphology? J Anim Ecol 2019; 88:1510-1521. [DOI: 10.1111/1365-2656.13047] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Accepted: 05/10/2019] [Indexed: 02/04/2023]
Affiliation(s)
- Jerker Vinterstare
- Department of Biology, Aquatic Ecology Unit, Ecology Building Lund University Lund Sweden
| | - Arne Hegemann
- Department of Biology, Aquatic Ecology Unit, Ecology Building Lund University Lund Sweden
| | - Per. Anders Nilsson
- Department of Biology, Aquatic Ecology Unit, Ecology Building Lund University Lund Sweden
- Department of Environmental and Life Sciences Karlstad University Karlstad Sweden
| | - Kaj Hulthén
- Department of Biology, Aquatic Ecology Unit, Ecology Building Lund University Lund Sweden
| | - Christer Brönmark
- Department of Biology, Aquatic Ecology Unit, Ecology Building Lund University Lund Sweden
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Freitak D, Tammaru T, Sandre S, Meister H, Esperk T. Longer life span is associated with elevated immune activity in a seasonally polyphenic butterfly. J Evol Biol 2019; 32:653-665. [PMID: 30903723 PMCID: PMC6850579 DOI: 10.1111/jeb.13445] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Revised: 02/13/2019] [Accepted: 03/06/2019] [Indexed: 12/13/2022]
Abstract
Seasonal polyphenism constitutes a specific type of phenotypic plasticity in which short-lived organisms produce different phenotypes in different times of the year. Seasonal generations of such species frequently differ in their overall lifespan and in the values of traits closely related to fitness. Seasonal polyphenisms provide thus excellent, albeit underused model systems for studying trade-offs between life-history traits. Here, we compare immunological parameters between the two generations of the European map butterfly (Araschnia levana), a well-known example of a seasonally polyphenic species. To reveal possible costs of immune defence, we also examine the concurrent differences in several life-history traits. Both in laboratory experiments and in the field, last instar larvae heading towards the diapause (overwintering) had higher levels of both phenoloxidase (PO) activity and lytic activity than directly developing individuals. These results suggest that individuals from the diapausing generation with much longer juvenile (pupal) period invest more in their immune system than those from the short-living directly developing generation. The revealed negative correlation between pupal mass and PO activity may be one of the reasons why, in this species, the diapausing generation has a smaller body size than the directly developing generation. Immunological parameters may thus well mediate trade-offs between body size-related traits.
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Affiliation(s)
- Dalial Freitak
- Faculty of Biological and Environmental SciencesOrganismal and Evolutionary Biology Research ProgrammeHelsinkiFinland
- Division of ZoologyInstitute of BiologyUniversity of GrazGrazAustria
| | - Toomas Tammaru
- Department of ZoologyInstitute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | - Siiri‐Lii Sandre
- Department of ZoologyInstitute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | - Hendrik Meister
- Department of ZoologyInstitute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
| | - Toomas Esperk
- Department of ZoologyInstitute of Ecology and Earth SciencesUniversity of TartuTartuEstonia
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10
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Eilenberg J, Saussure S, Ben Fekih I, Jensen AB, Klingen I. Factors driving susceptibility and resistance in aphids that share specialist fungal pathogens. CURRENT OPINION IN INSECT SCIENCE 2019; 33:91-98. [PMID: 31358202 DOI: 10.1016/j.cois.2019.05.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Revised: 04/24/2019] [Accepted: 05/01/2019] [Indexed: 06/10/2023]
Abstract
Pandora neoaphidis and Entomophthora planchoniana are widespread and important specialist fungal pathogens of aphids in cereals (Sitobion avenae and Rhopalosiphum padi). The two aphid species share these pathogens and we compare factors influencing susceptibility and resistance. Among factors that may influence susceptibility and resistance are aphid behavior, conspecific versus heterospecific host, aphid morph, life cycle, and presence of protective endosymbionts. It seems that the conspecific host is more susceptible (less resistant) than the heterospecific host, and alates are more susceptible than apterae. We conceptualize the findings in a diagram showing possible transmission in field situations and we pinpoint where there are knowledge gaps.
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Affiliation(s)
- Jørgen Eilenberg
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark.
| | - Stéphanie Saussure
- Norwegian Institute of Bioeconomy Research (NIBIO), Division of Biotechnology and Plant Health, P.O. Box 115, NO-1431 Ås, Norway; Norwegian University of Life Sciences, Department of Plant Science, P.O. Box 5003, NO-1432 Ås, Norway
| | - Ibtissem Ben Fekih
- Institute of Environmental Microbiology, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Annette Bruun Jensen
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark
| | - Ingeborg Klingen
- Norwegian Institute of Bioeconomy Research (NIBIO), Division of Biotechnology and Plant Health, P.O. Box 115, NO-1431 Ås, Norway
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11
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Spider mites escape bacterial infection by avoiding contaminated food. Oecologia 2018; 189:111-122. [DOI: 10.1007/s00442-018-4316-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Accepted: 11/22/2018] [Indexed: 11/26/2022]
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12
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Pirotte JALM, Lorenzi A, Foray V, Hance T. Impact of differences in nutritional quality of wingless and winged aphids on parasitoid fitness. ACTA ACUST UNITED AC 2018; 221:jeb.185645. [PMID: 30206107 DOI: 10.1242/jeb.185645] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2018] [Accepted: 09/03/2018] [Indexed: 11/20/2022]
Abstract
Winged aphids are described as hosts of lesser quality for parasitoids because a part of their resources is used to produce wings and associated muscles during their development. Host lipid content is particularly important for parasitoid larvae as they lack lipogenesis and therefore rely entirely on the host for this resource. The goal of this study was to determine to what extent winged and wingless aphids differ from a nutritional point of view and whether these differences impact parasitoid fitness, notably the lipid content. We analysed the energetic budget (proteins, lipids and carbohydrates) of aphids of different ages (third instars, fourth instars and adults) according to the morph (winged or wingless). We also compared fitness indicators for parasitoids emerging from winged and wingless aphids (third and fourth instars). We found that in third instars, parasitoids are able to inhibit wing development whereas this is not the case in fourth instars. Both winged instars allow the production of heavier and fattier parasitoids. The presence of wings in aphids seems to have little effect on the fitness of emerging parasitoids and did not modify female choice for oviposition. Finally, we demonstrate that Aphidius colemani, used as a biological control agent, is able to parasitize wingless as well as winged Myzus persicae, at least in the juvenile stages. If the parasitism occurs in third instars, the parasitoid will prevent the aphid from flying, which could in turn reduce virus transmission.
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Affiliation(s)
- Jennifer A-L M Pirotte
- Ecology of Interactions and Biological Control, Earth and Life Institute, Biodiversity Research Centre, Université catholique de Louvain, 4-5, Place Croix du Sud, 1348, Louvain-la-Neuve, Belgium
| | - Ange Lorenzi
- Microorganism & Insect Diversity, Genomes & Interactions (DGIMI) Laboratory, UMR 1333 INRA, Université de Montpellier, Place Eugène Bataillon, CC101, 34095 Montpellier Cedex, France
| | - Vincent Foray
- Centre de Recherches en Biologie cellulaire de Montpellier (UMR-CNRS 5237), 1919, Route de Mende, 34293 Montpellier Cedex 05, France
| | - Thierry Hance
- Ecology of Interactions and Biological Control, Earth and Life Institute, Biodiversity Research Centre, Université catholique de Louvain, 4-5, Place Croix du Sud, 1348, Louvain-la-Neuve, Belgium
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13
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Grantham ME, Brisson JA. Extensive Differential Splicing Underlies Phenotypically Plastic Aphid Morphs. Mol Biol Evol 2018; 35:1934-1946. [PMID: 29722880 PMCID: PMC6063273 DOI: 10.1093/molbev/msy095] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Phenotypic plasticity results in a diversity of phenotypes from a single genotype in response to environmental cues. To understand the molecular basis of phenotypic plasticity, studies have focused on differential gene expression levels between environmentally determined phenotypes. The extent of alternative splicing differences among environmentally determined phenotypes has largely been understudied. Here, we study alternative splicing differences among plastically produced morphs of the pea aphid using RNA-sequence data. Pea aphids express two separate polyphenisms (plasticity with discrete phenotypes): a wing polyphenism consisting of winged and wingless females and a reproduction polyphenism consisting of asexual and sexual females. We find that pea aphids alternatively splice 34% of their genes, a high percentage for invertebrates. We also find that there is extensive use of differential spliced events between genetically identical, polyphenic females. These differentially spliced events are enriched for exon skipping and mutually exclusive exon events that maintain the open reading frame, suggesting that polyphenic morphs use alternative splicing to produce phenotype-biased proteins. Many genes that are differentially spliced between polyphenic morphs have putative functions associated with their respective phenotypes. We find that the majority of differentially spliced genes is not differentially expressed genes. Our results provide a rich candidate gene list for future functional studies that would not have been previously considered based solely on gene expression studies, such as ensconsin in the reproductive polyphenism, and CAKI in the wing polyphenism. Overall, this study suggests an important role for alternative splicing in the expression of environmentally determined phenotypes.
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Affiliation(s)
- Mary E Grantham
- Department of Biology, University of Rochester, Rochester, NY
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