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Huang SH, Parandhaman M, Farnia S, Kim J, Amemiya S. Nanoelectrochemistry at liquid/liquid interfaces for analytical, biological, and material applications. Chem Commun (Camb) 2023; 59:9575-9590. [PMID: 37458703 PMCID: PMC10416082 DOI: 10.1039/d3cc01982a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/04/2023]
Abstract
Herein, we feature our recent efforts toward the development and application of nanoelectrochemistry at liquid/liquid interfaces, which are also known as interfaces between two immiscible electrolyte solutions (ITIES). Nanopipets, nanopores, and nanoemulsions are developed to create the nanoscale ITIES for the quantitative electrochemical measurement of ion transfer, electron transfer, and molecular transport across the interface. The nanoscale ITIES serves as an electrochemical nanosensor to enable the selective detection of various ions and molecules as well as high-resolution chemical imaging based on scanning electrochemical microscopy. The powerful nanoelectroanalytical methods will be useful for biological and material applications as illustrated by in situ studies of solid-state nanopores, nuclear pore complexes, living bacteria, and advanced nanoemulsions. These studies provide unprecedented insights into the chemical reactivity of important biological and material systems even at the single nanostructure level.
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Affiliation(s)
- Siao-Han Huang
- Department of Chemistry, University of Pittsburgh, Pittsburgh, PA, 15260, USA.
| | | | - Solaleh Farnia
- Department of Chemistry, University of Rhode Island, Kingston, RI, 02881, USA.
| | - Jiyeon Kim
- Department of Chemistry, University of Rhode Island, Kingston, RI, 02881, USA.
| | - Shigeru Amemiya
- Department of Chemistry, University of Pittsburgh, Pittsburgh, PA, 15260, USA.
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2
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Farkas B, Vojtková H, Farkas Z, Pangallo D, Kasak P, Lupini A, Kim H, Urík M, Matúš P. Involvement of Bacterial and Fungal Extracellular Products in Transformation of Manganese-Bearing Minerals and Its Environmental Impact. Int J Mol Sci 2023; 24:ijms24119215. [PMID: 37298163 DOI: 10.3390/ijms24119215] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 05/11/2023] [Accepted: 05/20/2023] [Indexed: 06/12/2023] Open
Abstract
Manganese oxides are considered an essential component of natural geochemical barriers due to their redox and sorptive reactivity towards essential and potentially toxic trace elements. Despite the perception that they are in a relatively stable phase, microorganisms can actively alter the prevailing conditions in their microenvironment and initiate the dissolution of minerals, a process that is governed by various direct (enzymatic) or indirect mechanisms. Microorganisms are also capable of precipitating the bioavailable manganese ions via redox transformations into biogenic minerals, including manganese oxides (e.g., low-crystalline birnessite) or oxalates. Microbially mediated transformation influences the (bio)geochemistry of manganese and also the environmental chemistry of elements intimately associated with its oxides. Therefore, the biodeterioration of manganese-bearing phases and the subsequent biologically induced precipitation of new biogenic minerals may inevitably and severely impact the environment. This review highlights and discusses the role of microbially induced or catalyzed processes that affect the transformation of manganese oxides in the environment as relevant to the function of geochemical barriers.
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Affiliation(s)
- Bence Farkas
- Institute of Laboratory Research on Geomaterials, Faculty of Natural Sciences, Comenius University in Bratislava, Mlynská dolina, Ilkovičova 6, 84215 Bratislava, Slovakia
| | - Hana Vojtková
- Department of Environmental Engineering, Faculty of Mining and Geology, VŠB-Technical University of Ostrava, 17. Listopadu 15/2172, 708 00 Ostrava, Czech Republic
| | - Zuzana Farkas
- Institute of Molecular Biology, Slovak Academy of Sciences, Dúbravská Cesta 21, 84551 Bratislava, Slovakia
| | - Domenico Pangallo
- Institute of Molecular Biology, Slovak Academy of Sciences, Dúbravská Cesta 21, 84551 Bratislava, Slovakia
| | - Peter Kasak
- Center for Advanced Materials, Qatar University, Doha P.O. Box 2713, Qatar
| | - Antonio Lupini
- Department of Agraria, Mediterranea University of Reggio Calabria, Feo di Vito snc, 89124 Reggio Calabria, Italy
| | - Hyunjung Kim
- Department of Earth Resources and Environmental Engineering, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea
| | - Martin Urík
- Institute of Laboratory Research on Geomaterials, Faculty of Natural Sciences, Comenius University in Bratislava, Mlynská dolina, Ilkovičova 6, 84215 Bratislava, Slovakia
| | - Peter Matúš
- Institute of Laboratory Research on Geomaterials, Faculty of Natural Sciences, Comenius University in Bratislava, Mlynská dolina, Ilkovičova 6, 84215 Bratislava, Slovakia
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3
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Radouani F, Sanchez-Cid C, Silbande A, Laure A, Ruiz-Valencia A, Robert F, Vogel TM, Salvin P. Evolution and interaction of microbial communities in mangrove microbial fuel cells and first description of Shewanella fodinae as electroactive bacterium. Bioelectrochemistry 2023; 153:108460. [PMID: 37224603 DOI: 10.1016/j.bioelechem.2023.108460] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 04/26/2023] [Accepted: 05/04/2023] [Indexed: 05/26/2023]
Abstract
Understanding exoelectrogenic bacteria mechanisms and their interactions in complex biofilm is critical for the development of microbial fuel cells (MFCs). In this article, assumptions concerning the benefits of the complex sediment microbial community for electricity production were explored with both the complex microbial community and isolates identified as Shewanella. Analysis of the microbial community revealed a strong influence of the sediment community on anodes and electrolytes compared to that of only water. Moreover, while Pelobacteraceae-related genera were dominant in our MFCs instead of Desulfuromonas and Geobacter as usually reported, the electroactive Shewanella algae and Shewanella fodinae were isolated and cultivated from the anodic biofilm. S. fodinae, described for the first time as an electroactive bacterium to the best of our knowledge, led to a maximal current density of 3.6 A/m2 set as 0.3 V/SCE in a three-electrode set-up fed with lactate. S. algae, in a complex medium containing several available substrates, showed several preferential oxidative behaviors including a diauxic behavior. In pure culture and under our conditions, S. fodinae and S. algae were not able to use acetate as a sole electron donor. However, their presence in our acetate-fed MFCs and the adaptive behavior of S. algae hint a syntrophic interaction between the bacteria to optimize the use of the substrate in a complex environment.
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Affiliation(s)
- Fatima Radouani
- Laboratoire des Matériaux et Molécules en Milieu Agressif, UR4_1, UFR STE, Université des Antilles, Schoelcher, France
| | - Concepcion Sanchez-Cid
- Environmental Microbial Genomics, CNRS UMR 5005 Laboratoire Ampère, École Centrale de Lyon, Université de Lyon, Écully, France
| | - Adèle Silbande
- Laboratoire des Matériaux et Molécules en Milieu Agressif, UR4_1, UFR STE, Université des Antilles, Schoelcher, France
| | - Adeline Laure
- Laboratoire des Matériaux et Molécules en Milieu Agressif, UR4_1, UFR STE, Université des Antilles, Schoelcher, France
| | - Azariel Ruiz-Valencia
- Environmental Microbial Genomics, CNRS UMR 5005 Laboratoire Ampère, École Centrale de Lyon, Université de Lyon, Écully, France
| | - Florent Robert
- Laboratoire des Matériaux et Molécules en Milieu Agressif, UR4_1, UFR STE, Université des Antilles, Schoelcher, France
| | - Timothy M Vogel
- Université de Lyon, Université Claude Bernard Lyon 1, UMR 5557, UMR INRAe 1418, VetAgro Sup, Écologie Microbienne, équipe BEER, F-69622 Villeurbanne, France
| | - Paule Salvin
- Laboratoire des Matériaux et Molécules en Milieu Agressif, UR4_1, UFR STE, Université des Antilles, Schoelcher, France.
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4
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Elangovan S, Puri SR, Madawala H, Pantano J, Pellock B, Kiesewetter MK, Kim J. Nanoscale Carbonate Ion-Selective Amperometric/Voltammetric Probes Based on Ion-Ionophore Recognition at the Organic/Water Interface: Hidden Pieces of the Puzzle in the Nanoscale Phase. Anal Chem 2023; 95:4271-4281. [PMID: 36808982 DOI: 10.1021/acs.analchem.2c02626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2023]
Abstract
Here, we report on the successful demonstration and application of carbonate (CO32-) ion-selective amperometric/voltammetric nanoprobes based on facilitated ion transfer (IT) at the nanoscale interface between two immiscible electrolyte solutions. This electrochemical study reveals critical factors to govern CO32--selective nanoprobes using broadly available Simon-type ionophores forming a covalent bond with CO32-, i.e., slow dissolution of lipophilic ionophores in the organic phase, activation of hydrated ionophores, peculiar solubility of a hydrated ion-ionophore complex near the interface, and cleanness at the nanoscale interface. These factors are experimentally confirmed by nanopipet voltammetry, where a facilitated CO32- IT is studied with a nanopipet filled with an organic phase containing the trifluoroacetophenone derivative CO32-ionophore (CO32-ionophore VII) by voltammetrically and amperometrically sensing CO32- in water. Theoretical assessments of reproducible voltammetric data confirm that the dynamics of CO32- ionophore VII-facilitated ITs (FITs) follows the one-step electrochemical (E) mechanism controlled by both water-finger formation/dissociation and ion-ionophore complexation/dissociation during interfacial ITs. The yielded rate constant, k0 = 0.048 cm/s, is very similar to the reported values of other FIT reactions using ionophores forming non-covalent bonds with ions, implying that a weak binding between CO32- ion-ionophore enables us to observe FITs by fast nanopipet voltammetry regardless of the nature of bondings between the ion and ionophore. The analytical utility of CO32--selective amperometric nanoprobes is further demonstrated by measuring the CO32- concentration produced by metal-reducing bacteria Shewanella oneidensis MR-1 as a result of organic fuel oxidation in bacterial growth media in the presence of various interferents such as H2PO4-, Cl-, and SO42-.
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Affiliation(s)
- Subhashini Elangovan
- Department of Chemistry, University of Rhode Island, Kingston, Rhode Island 02881, United States
| | - Surendra Raj Puri
- Department of Chemistry, University of Rhode Island, Kingston, Rhode Island 02881, United States
| | - Hiranya Madawala
- Department of Chemistry, University of Rhode Island, Kingston, Rhode Island 02881, United States
| | - Justin Pantano
- Department of Chemistry, University of Rhode Island, Kingston, Rhode Island 02881, United States
| | - Brett Pellock
- Department of Biology, Providence College, Providence, Rhode Island 02981, United States
| | - Matthew K Kiesewetter
- Department of Chemistry, University of Rhode Island, Kingston, Rhode Island 02881, United States
| | - Jiyeon Kim
- Department of Chemistry, University of Rhode Island, Kingston, Rhode Island 02881, United States
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5
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Wang X, Xie GJ, Tian N, Dang CC, Cai C, Ding J, Liu BF, Xing DF, Ren NQ, Wang Q. Anaerobic microbial manganese oxidation and reduction: A critical review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 822:153513. [PMID: 35101498 DOI: 10.1016/j.scitotenv.2022.153513] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2021] [Revised: 01/24/2022] [Accepted: 01/25/2022] [Indexed: 06/14/2023]
Abstract
Manganese is a vital heavy metal abundant in terrestrial and aquatic environments. Anaerobic manganese redox reactions mediated by microorganisms have been recognized for a long time, which promote elements mobility and bioavailability in the environment. Biological anaerobic redox of manganese serves two reactions, including Mn(II) oxidation and Mn(IV) reduction. This review provides a comprehensive analysis of manganese redox cycles in the environment, closely related to greenhouse gas mitigation, the fate of nutrients, microbial bioremediation, and global biogeochemical cycle, including nitrogen, sulfur, and carbon. The oxidation and reduction of manganese occur cyclically and simultaneously in the environment. Anaerobic reduction of Mn(IV) receives electrons from methane, ammonium and sulfide, while Mn(II) can function as an electron source for manganese-oxidizing microorganisms for autotrophic denitrification and photosynthesis. The anaerobic redox transition between Mn(II) and Mn(IV) promotes a dynamic biogeochemical cycle coupled to microorganisms in water, soil and sediment environments. The discussion of reaction mechanisms, microorganism diversity, environmental influence bioremediation and application identify the research gaps for future investigation, which provides promising opportunities for further development of biotechnological applications to remediate contaminated environments.
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Affiliation(s)
- Xuan Wang
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Guo-Jun Xie
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China.
| | - Ning Tian
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Cheng-Cheng Dang
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Chen Cai
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Environmental Science and Engineering, University of Science and Technology of China, Hefei, Anhui, 230026, China
| | - Jie Ding
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Bing-Feng Liu
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - De-Feng Xing
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Nan-Qi Ren
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Qilin Wang
- Centre for Technology in Water and Wastewater, School of Civil and Environmental Engineering, University of Technology Sydney, Ultimo, NSW 2007, Australia
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Berger S, Shaw DR, Berben T, Ouboter HT, In 't Zandt MH, Frank J, Reimann J, Jetten MSM, Welte CU. Current production by non-methanotrophic bacteria enriched from an anaerobic methane-oxidizing microbial community. Biofilm 2021; 3:100054. [PMID: 34308332 PMCID: PMC8258643 DOI: 10.1016/j.bioflm.2021.100054] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 04/12/2021] [Accepted: 05/19/2021] [Indexed: 12/21/2022] Open
Abstract
In recent years, the externalization of electrons as part of respiratory metabolic processes has been discovered in many different bacteria and some archaea. Microbial extracellular electron transfer (EET) plays an important role in many anoxic natural or engineered ecosystems. In this study, an anaerobic methane-converting microbial community was investigated with regard to its potential to perform EET. At this point, it is not well-known if or how EET confers a competitive advantage to certain species in methane-converting communities. EET was investigated in a two-chamber electrochemical system, sparged with methane and with an applied potential of +400 mV versus standard hydrogen electrode. A biofilm developed on the working electrode and stable low-density current was produced, confirming that EET indeed did occur. The appearance and presence of redox centers at −140 to −160 mV and at −230 mV in the biofilm was confirmed by cyclic voltammetry scans. Metagenomic analysis and fluorescence in situ hybridization of the biofilm showed that the anaerobic methanotroph ‘Candidatus Methanoperedens BLZ2’ was a significant member of the biofilm community, but its relative abundance did not increase compared to the inoculum. On the contrary, the relative abundance of other members of the microbial community significantly increased (up to 720-fold, 7.2% of mapped reads), placing these microorganisms among the dominant species in the bioanode community. This group included Zoogloea sp., Dechloromonas sp., two members of the Bacteroidetes phylum, and the spirochete Leptonema sp. Genes encoding proteins putatively involved in EET were identified in Zoogloea sp., Dechloromonas sp. and one member of the Bacteroidetes phylum. We suggest that instead of methane, alternative carbon sources such as acetate were the substrate for EET. Hence, EET in a methane-driven chemolithoautotrophic microbial community seems a complex process in which interactions within the microbial community are driving extracellular electron transfer to the electrode.
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Affiliation(s)
- S Berger
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands
| | - D R Shaw
- Biological and Environmental Science and Engineering Division, Water Desalination and Reuse Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.,Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, the Netherlands
| | - T Berben
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands
| | - H T Ouboter
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands.,Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, the Netherlands
| | - M H In 't Zandt
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands.,Netherlands Earth System Science Center, Utrecht University, Utrecht, the Netherlands
| | - J Frank
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands.,Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, the Netherlands
| | - J Reimann
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands
| | - M S M Jetten
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands.,Netherlands Earth System Science Center, Utrecht University, Utrecht, the Netherlands.,Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, the Netherlands
| | - C U Welte
- Institute for Water and Wetland Research, Department of Microbiology, Radboud University, Nijmegen, the Netherlands.,Soehngen Institute of Anaerobic Microbiology, Radboud University, Nijmegen, the Netherlands
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LaRowe DE, Carlson HK, Amend JP. The Energetic Potential for Undiscovered Manganese Metabolisms in Nature. Front Microbiol 2021; 12:636145. [PMID: 34177823 PMCID: PMC8220133 DOI: 10.3389/fmicb.2021.636145] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Accepted: 05/03/2021] [Indexed: 11/13/2022] Open
Abstract
Microorganisms are found in nearly every surface and near-surface environment, where they gain energy by catalyzing reactions among a wide variety of chemical compounds. The discovery of new catabolic strategies and microbial habitats can therefore be guided by determining which redox reactions can supply energy under environmentally-relevant conditions. In this study, we have explored the thermodynamic potential of redox reactions involving manganese, one of the most abundant transition metals in the Earth's crust. In particular, we have assessed the Gibbs energies of comproportionation and disproportionation reactions involving Mn2+ and several Mn-bearing oxide and oxyhydroxide minerals containing Mn in the +II, +III, and +IV oxidation states as a function of temperature (0-100°C) and pH (1-13). In addition, we also calculated the energetic potential of Mn2+ oxidation coupled to O2, NO2 -, NO3 -, and FeOOH. Results show that these reactions-none of which, except O2 + Mn2+, are known catabolisms-can provide energy to microorganisms, particularly at higher pH values and temperatures. Comproportionation between Mn2+ and pyrolusite, for example, can yield 10 s of kJ (mol Mn)-1. Disproportionation of Mn3+ can yield more than 100 kJ (mol Mn)-1 at conditions relevant to natural settings such as sediments, ferromanganese nodules and crusts, bioreactors and suboxic portions of the water column. Of the Mn2+ oxidation reactions, the one with nitrite as the electron acceptor is most energy yielding under most combinations of pH and temperature. We posit that several Mn redox reactions represent heretofore unknown microbial metabolisms.
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Affiliation(s)
- Douglas E LaRowe
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States
| | - Harold K Carlson
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States
| | - Jan P Amend
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States.,Department of Biological Sciences, University of Southern California, Los Angeles, CA, United States
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8
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Wang X, Wang Q, Yang P, Wang X, Zhang L, Feng X, Zhu M, Wang Z. Oxidation of Mn(III) Species by Pb(IV) Oxide as a Surrogate Oxidant in Aquatic Systems. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:14124-14133. [PMID: 33064452 DOI: 10.1021/acs.est.0c05459] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Dissolved Mn(III) species have been recognized as a significant form of Mn in redox transition environments, but a holistic understanding of their geochemical properties still lacks the characterization of their reactivity as reductants. Through using PbO2 as a surrogate oxidant and pyrophosphate (PP) as a model ligand, we evaluated the thermodynamic and kinetic constrains of dissolved Mn(III) oxidation under environmentally relevant pH. Without disproportionation, Mn(III) complexes could be directly oxidized by PbO2 to produce Mn oxides. The reaction rates decreased with increasing PP:Mn(III) ratio and became negligible when the ratio was above a threshold value. Particulate manganite could also be oxidized by PbO2 with detectable production of Pb(II). The favorability of Mn(III) oxidation by PbO2 as a function of the PP:Mn ratio could be predicted by the stability constant of the Mn(III)-PP complex. We developed kinetic models that couple multiple pathways of Mn oxidation by PbO2 to simulate the dynamics of Pb release, loss of dissolved Mn, as well as Mn(III) production and consumption. Beyond the context of Mn geochemistry, the interactions between Pb and various Mn species, including its trivalent forms, may also have important implications to the water quality in lead service lines within distribution systems.
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Affiliation(s)
- Xingxing Wang
- Department of Environmental Science and Engineering, Fudan University, Shanghai 200433, China
| | - Qihuang Wang
- Department of Environmental Science and Engineering, Fudan University, Shanghai 200433, China
| | - Peng Yang
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming 82071, United States
| | - Xiaoming Wang
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Liwu Zhang
- Department of Environmental Science and Engineering, Fudan University, Shanghai 200433, China
- Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
| | - Xionghan Feng
- College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Mengqiang Zhu
- Department of Ecosystem Science and Management, University of Wyoming, Laramie, Wyoming 82071, United States
| | - Zimeng Wang
- Department of Environmental Science and Engineering, Fudan University, Shanghai 200433, China
- Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China
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9
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Inohana Y, Katsuya S, Koga R, Kouzuma A, Watanabe K. Shewanella algae Relatives Capable of Generating Electricity from Acetate Contribute to Coastal-Sediment Microbial Fuel Cells Treating Complex Organic Matter. Microbes Environ 2020; 35. [PMID: 32147604 PMCID: PMC7308575 DOI: 10.1264/jsme2.me19161] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Abstract
To identify exoelectrogens involved in the generation of electricity from complex organic matter in coastal sediment (CS) microbial fuel cells (MFCs), MFCs were inoculated with CS obtained from tidal flats and estuaries in the Tokyo bay and supplemented with starch, peptone, and fish extract as substrates. Power output was dependent on the CS used as inocula and ranged between 100 and 600 mW m–2 (based on the projected area of the anode). Analyses of anode microbiomes using 16S rRNA gene amplicons revealed that the read abundance of some bacteria, including those related to Shewanella algae, positively correlated with power outputs from MFCs. Some fermentative bacteria were also detected as major populations in anode microbiomes. A bacterial strain related to S. algae was isolated from MFC using an electrode plate-culture device, and pure-culture experiments demonstrated that this strain exhibited the ability to generate electricity from organic acids, including acetate. These results suggest that acetate-oxidizing S. algae relatives generate electricity from fermentation products in CS-MFCs that decompose complex organic matter.
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Affiliation(s)
- Yoshino Inohana
- School of Life Sciences, Tokyo University of Pharmacy and Life Sciences
| | - Shohei Katsuya
- School of Life Sciences, Tokyo University of Pharmacy and Life Sciences
| | - Ryota Koga
- School of Life Sciences, Tokyo University of Pharmacy and Life Sciences
| | - Atsushi Kouzuma
- School of Life Sciences, Tokyo University of Pharmacy and Life Sciences
| | - Kazuya Watanabe
- School of Life Sciences, Tokyo University of Pharmacy and Life Sciences
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10
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Szeinbaum N, Nunn BL, Cavazos AR, Crowe SA, Stewart FJ, DiChristina TJ, Reinhard CT, Glass JB. Novel insights into the taxonomic diversity and molecular mechanisms of bacterial Mn(III) reduction. ENVIRONMENTAL MICROBIOLOGY REPORTS 2020; 12:583-593. [PMID: 32613749 PMCID: PMC7775658 DOI: 10.1111/1758-2229.12867] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Revised: 06/27/2020] [Accepted: 06/29/2020] [Indexed: 05/23/2023]
Abstract
Soluble ligand-bound Mn(III) can support anaerobic microbial respiration in diverse aquatic environments. Thus far, Mn(III) reduction has only been associated with certain Gammaproteobacteria. Here, we characterized microbial communities enriched from Mn-replete sediments of Lake Matano, Indonesia. Our results provide the first evidence for the biological reduction of soluble Mn(III) outside the Gammaproteobacteria. Metagenome assembly and binning revealed a novel betaproteobacterium, which we designate 'Candidatus Dechloromonas occultata.' This organism dominated the enrichment and expressed a porin-cytochrome c complex typically associated with iron-oxidizing Betaproteobacteria and a novel cytochrome c-rich protein cluster (Occ), including an undecaheme putatively involved in extracellular electron transfer. This occ gene cluster was also detected in diverse aquatic bacteria, including uncultivated Betaproteobacteria from the deep subsurface. These observations provide new insight into the taxonomic and functional diversity of microbially driven Mn(III) reduction in natural environments.
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Affiliation(s)
- Nadia Szeinbaum
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, USA
- NASA Astrobiology Institute, Alternative Earths Team, Mountain View, CA, USA
| | - Brook L. Nunn
- Department of Genome Sciences, University of Washington, Seattle, WA, USA
| | - Amanda R. Cavazos
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, USA
| | - Sean A. Crowe
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, USA
- Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, Canada
- Department of Earth, Ocean, and Atmospheric Sciences, University of British Columbia, Vancouver, BC, Canada
| | - Frank J. Stewart
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, USA
- Department of Microbiology and Immunology, Montana State University, Bozeman, MT, USA
| | | | - Christopher T. Reinhard
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, USA
- NASA Astrobiology Institute, Alternative Earths Team, Mountain View, CA, USA
| | - Jennifer B. Glass
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, USA
- NASA Astrobiology Institute, Alternative Earths Team, Mountain View, CA, USA
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11
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Qian A, Zhang W, Shi C, Pan C, Giammar DE, Yuan S, Zhang H, Wang Z. Geochemical Stability of Dissolved Mn(III) in the Presence of Pyrophosphate as a Model Ligand: Complexation and Disproportionation. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019; 53:5768-5777. [PMID: 30973718 DOI: 10.1021/acs.est.9b00498] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Dissolved Mn(III) species have recently been recognized as a significant form of Mn in redox transition zones, but their speciation, stability, and reactivity are poorly understood. Besides acting as the intermediate for Mn redox chemistry, Mn(III) can undergo disproportionation producing insoluble Mn oxides and aqueous Mn(II). Using pyrophosphate(PP) as a model ligand, we evaluated the thermodynamic and kinetic stability of Mn(III) complexes. They were stable at circumneutral pH and were prone to (partial) disproportionation at acidic or basic pH. With an initial lag phase, the kinetics of Mn(III)-PP disproportionation was autocatalytic with the produced Mn oxides promoting the disproportionation. X-ray diffraction and the average Mn oxidation state indicated that the solid products were not pure Mn(IV) oxides but a mixture of triclinic birnessite and δ-MnO2. Addition of synthetic analogs of the precipitates eliminated the lag phase, confirming their catalytic roles. Thermodynamic calculations adequately predicted the stability regime of Mn(III)-PP. The present results refined the constant for Mn(PP)25- formation, which allows a consistent and quantitative prediction of equilibrium speciation of Mn(III)-Mn(II)-birnessite with PP. A simple and robust model, which incorporated the thermodynamic constraints, autocatalytic rate law, and verified reaction stoichiometry, successfully simulated all kinetic data.
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Affiliation(s)
- Ao Qian
- State Key Laboratory of Biogeology and Environmental Geology , China University of Geosciences , Wuhan , Hubei China
| | - Wen Zhang
- Department of Environmental Science and Engineering , Fudan University , Shanghai , China
| | - Cheng Shi
- Department of Civil and Environmental Engineering , Louisiana State University , Baton Rouge , Louisiana United States
| | - Chao Pan
- Department of Energy, Environmental and Chemical Engineering , Washington University in St. Louis , St. Louis , Missouri United States
| | - Daniel E Giammar
- Department of Energy, Environmental and Chemical Engineering , Washington University in St. Louis , St. Louis , Missouri United States
| | - Songhu Yuan
- State Key Laboratory of Biogeology and Environmental Geology , China University of Geosciences , Wuhan , Hubei China
| | - Hongliang Zhang
- Department of Civil and Environmental Engineering , Louisiana State University , Baton Rouge , Louisiana United States
| | - Zimeng Wang
- Department of Environmental Science and Engineering , Fudan University , Shanghai , China
- Shanghai Institute of Pollution Control and Ecological Security , Shanghai , China
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Hirose A, Kasai T, Koga R, Suzuki Y, Kouzuma A, Watanabe K. Understanding and engineering electrochemically active bacteria for sustainable biotechnology. BIORESOUR BIOPROCESS 2019. [DOI: 10.1186/s40643-019-0245-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
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13
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Szeinbaum N, Kellum CE, Glass JB, Janda JM, DiChristina TJ. Whole-genome sequencing reveals that Shewanella haliotis Kim et al. 2007 can be considered a later heterotypic synonym of Shewanella algae Simidu et al. 1990. Int J Syst Evol Microbiol 2018; 68:1356-1360. [PMID: 29504926 DOI: 10.1099/ijsem.0.002678] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Previously, experimental DNA-DNA hybridization (DDH) between Shewanellahaliotis JCM 14758T and Shewanellaalgae JCM 21037T had suggested that the two strains could be considered different species, despite minimal phenotypic differences. The recent isolation of Shewanella sp. MN-01, with 99 % 16S rRNA gene identity to S. algae and S. haliotis, revealed a potential taxonomic problem between these two species. In this study, we reassessed the nomenclature of S. haliotis and S. algae using available whole-genome sequences. The whole-genome sequence of S. haliotis JCM 14758T and ten S. algae strains showed ≥97.7 % average nucleotide identity and >78.9 % digital DDH, clearly above the recommended species thresholds. According to the rules of priority and in view of the results obtained, S. haliotis is to be considered a later heterotypic synonym of S. algae. Because the whole-genome sequence of Shewanella sp. strain MN-01 shares >99 % ANI with S. algae JCM 14758T, it can be confidently identified as S. algae.
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Affiliation(s)
- Nadia Szeinbaum
- School of Biology, Georgia Institute of Technology, Atlanta, GA, USA
| | - Cailin E Kellum
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, USA
| | - Jennifer B Glass
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, USA
| | - J Michael Janda
- Public Health Laboratory at Kern County, Bakersfield, CA, USA
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