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Papale M, Fazi S, Severini M, Scarinci R, Dell'Acqua O, Azzaro M, Venuti V, Fazio B, Fazio E, Crupi V, Irrera A, Rizzo C, Giudice AL, Caruso G. Structural properties and microbial diversity of the biofilm colonizing plastic substrates in Terra Nova Bay (Antarctica). THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 943:173773. [PMID: 38844237 DOI: 10.1016/j.scitotenv.2024.173773] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 05/30/2024] [Accepted: 06/02/2024] [Indexed: 06/15/2024]
Abstract
Microbial colonization on plastic polymers has been extensively explored, however the temporal dynamics of biofilm community in Antarctic environments are almost unknown. As a contribute to fill this knowledge gap, the structural characteristics and microbial diversity of the biofilm associated with polyvinyl chloride (PVC) and polyethylene (PE) panels submerged at 5 m of depth and collected after 3, 9 and 12 months were investigated in four coastal sites of the Ross Sea. Additional panels placed at 5 and 20 m were retrieved after 12 months. Chemical characterization was performed by FTIR-ATR and Raman (through Surface-Enhanced Raman Scattering, SERS) spectroscopy. Bacterial community composition was quantified at a single cell level by Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (CARD-FISH) and Confocal Laser Scanning Microscopy (CLSM); microbial diversity was assessed by 16S rRNA gene sequencing. This multidisciplinary approach has provided new insights into microbial community dynamics during biofouling process, shedding light on the biofilm diversity and temporal succession on plastic substrates in the Ross Sea. Significant differences between free-living and microbial biofilm communities were found, with a more consolidated and structured community composition on PVC compared to PE. Spectral features ascribable to tyrosine, polysaccharides, nucleic acids and lipids characterized the PVC-associated biofilms. Pseudomonadota (among Gamma-proteobacteria) and Alpha-proteobacteria dominated the microbial biofilm community. Interestingly, in Road Bay, close to the Italian "Mario Zucchelli" research station, the biofilm growth - already observed during summer season, after 3 months of submersion - continued afterwards leading to a massive microbial abundance at the end of winter (after 12 months). After 3 months, higher percentages of Gamma-proteobacteria in Road Bay than in the not-impacted site were found. These observations lead us to hypothesize that in this site microbial fouling developed during the first 3 months could serve as a starter pioneering community stimulating the successive growth during winter.
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Affiliation(s)
- Maria Papale
- Institute of Polar Sciences, National Research Council (CNR-ISP), Spianata S. Raineri 86, 98122 Messina, Italy
| | - Stefano Fazi
- Water Research Institute, National Research Council (CNR-IRSA), Via Salaria km 29.300 CP10, 00015 Monterotondo, Rome, Italy; National Biodiversity Future Center, Piazza Marina 61, 90133 Palermo, Italy
| | - Maila Severini
- Water Research Institute, National Research Council (CNR-IRSA), Via Salaria km 29.300 CP10, 00015 Monterotondo, Rome, Italy
| | - Roberta Scarinci
- Water Research Institute, National Research Council (CNR-IRSA), Via Salaria km 29.300 CP10, 00015 Monterotondo, Rome, Italy
| | - Ombretta Dell'Acqua
- DISTAV, Department of Earth, Environmental and Life Sciences, University of Genoa, Corso Europa, 26, 16132 Genoa, Italy
| | - Maurizio Azzaro
- Institute of Polar Sciences, National Research Council (CNR-ISP), Spianata S. Raineri 86, 98122 Messina, Italy
| | - Valentina Venuti
- Department of Mathematical and Computer Sciences, Physical Sciences and Earth Sciences, University of Messina, Viale Ferdinando Stagno D'Alcontres 31, 98166 Messina, Italy
| | - Barbara Fazio
- URT "LabSens of Beyond Nano" of the Department of Physical Sciences and Technologies of Matter, National Research Council (CNR- DSFTM-ME), Viale Ferdinando Stagno D'Alcontres 31, 98166 Messina, Italy; Institute for Chemical and Physical Processes, National Research Council (CNR-IPCF), Viale Ferdinando Stagno d'Alcontres, 37, 98158 Messina, Messina, Italy
| | - Enza Fazio
- Department of Mathematical and Computer Sciences, Physical Sciences and Earth Sciences, University of Messina, Viale Ferdinando Stagno D'Alcontres 31, 98166 Messina, Italy
| | - Vincenza Crupi
- Department of Mathematical and Computer Sciences, Physical Sciences and Earth Sciences, University of Messina, Viale Ferdinando Stagno D'Alcontres 31, 98166 Messina, Italy
| | - Alessia Irrera
- URT "LabSens of Beyond Nano" of the Department of Physical Sciences and Technologies of Matter, National Research Council (CNR- DSFTM-ME), Viale Ferdinando Stagno D'Alcontres 31, 98166 Messina, Italy.
| | - Carmen Rizzo
- Institute of Polar Sciences, National Research Council (CNR-ISP), Spianata S. Raineri 86, 98122 Messina, Italy; Marine Biotechnology Department, Stazione Zoologica Anton Dohrn, Sicily Marine Centre, Villa Pace, Contrada Porticatello 29, 98167 Messina, Italy
| | - Angelina Lo Giudice
- Institute of Polar Sciences, National Research Council (CNR-ISP), Spianata S. Raineri 86, 98122 Messina, Italy; National Biodiversity Future Center, Piazza Marina 61, 90133 Palermo, Italy
| | - Gabriella Caruso
- Institute of Polar Sciences, National Research Council (CNR-ISP), Spianata S. Raineri 86, 98122 Messina, Italy.
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Freckelton ML, Nedved BT, Hadfield MG. Bacterial envelope polysaccharide cues settlement and metamorphosis in the biofouling tubeworm Hydroides elegans. Commun Biol 2024; 7:883. [PMID: 39030323 PMCID: PMC11271524 DOI: 10.1038/s42003-024-06585-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Accepted: 07/15/2024] [Indexed: 07/21/2024] Open
Abstract
Metamorphosis for many marine invertebrates is triggered by external cues, commonly produced by bacteria. For larvae of Hydroides elegans, lipopolysaccharide (LPS) from the biofilm-dwelling bacterium Cellulophaga lytica induces metamorphosis. To determine whether bacterial LPS is a common metamorphosis-inducing factor for this species, we compare larval responses to LPS from 3 additional inductive Gram-negative marine biofilm bacteria with commercially available LPS from 3 bacteria not known to induce metamorphosis. LPS from all the inductive bacteria trigger metamorphosis, while LPS from non-inductive isolated marine bacteria do not. We then ask, which part of the LPS is the inductive element, the lipid (Lipid-A) or the polysaccharide (O-antigen), and find it is the latter for all four inductive bacteria. Finally, we examine the LPS subunits from two strains of the same bacterial species, one inductive and the other not, and find the LPS and O-antigen to be inductive from only the inductive bacterial strain.
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Affiliation(s)
| | - Brian T Nedved
- Kewalo Marine Laboratory, University of Hawai'i, Honolulu, HI, 96813, USA
| | - Michael G Hadfield
- Kewalo Marine Laboratory, University of Hawai'i, Honolulu, HI, 96813, USA.
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3
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Turnlund AC, Vanwonterghem I, Botté ES, Randall CJ, Giuliano C, Kam L, Bell S, O'Brien P, Negri AP, Webster NS, Lurgi M. Linking differences in microbial network structure with changes in coral larval settlement. ISME COMMUNICATIONS 2023; 3:114. [PMID: 37865659 PMCID: PMC10590418 DOI: 10.1038/s43705-023-00320-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 09/27/2023] [Accepted: 10/06/2023] [Indexed: 10/23/2023]
Abstract
Coral cover and recruitment have decreased on reefs worldwide due to climate change-related disturbances. Achieving reliable coral larval settlement under aquaculture conditions is critical for reef restoration programmes; however, this can be challenging due to the lack of reliable and universal larval settlement cues. To investigate the role of microorganisms in coral larval settlement, we undertook a settlement choice experiment with larvae of the coral Acropora tenuis and microbial biofilms grown for different periods on the reef and in aquaria. Biofilm community composition across conditioning types and time was profiled using 16S and 18S rRNA gene sequencing. Co-occurrence networks revealed that strong larval settlement correlated with diverse biofilm communities, with specific nodes in the network facilitating connections between modules comprised of low- vs high-settlement communities. Taxa associated with high-settlement communities were identified as Myxoccales sp., Granulosicoccus sp., Alcanivoraceae sp., unassigned JTB23 sp. (Gammaproteobacteria), and Pseudovibrio denitrificans. Meanwhile, taxa closely related to Reichenbachiella agariperforans, Pleurocapsa sp., Alcanivorax sp., Sneathiella limmimaris, as well as several diatom and brown algae were associated with low settlement. Our results characterise high-settlement biofilm communities and identify transitionary taxa that may develop settlement-inducing biofilms to improve coral larval settlement in aquaculture.
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Affiliation(s)
- Abigail C Turnlund
- The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Centre for Ecogenomics, St Lucia, QLD, 4072, Australia
| | - Inka Vanwonterghem
- The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Centre for Ecogenomics, St Lucia, QLD, 4072, Australia
| | - Emmanuelle S Botté
- Centre for Marine Science and Innovation, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, NSW, Australia
- Australian Institute of Marine Science, Townsville, QLD, Australia
| | - Carly J Randall
- Australian Institute of Marine Science, Townsville, QLD, Australia
| | | | - Lisa Kam
- Australian Institute of Marine Science, Townsville, QLD, Australia
| | - Sara Bell
- Australian Institute of Marine Science, Townsville, QLD, Australia
| | - Paul O'Brien
- The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Centre for Ecogenomics, St Lucia, QLD, 4072, Australia
| | - Andrew P Negri
- Australian Institute of Marine Science, Townsville, QLD, Australia
| | - Nicole S Webster
- The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Centre for Ecogenomics, St Lucia, QLD, 4072, Australia
- Australian Institute of Marine Science, Townsville, QLD, Australia
- Department of Climate Change, Energy, the Environment and Water, Australian Antarctic Division, Kingston, ACT, Australia
| | - Miguel Lurgi
- Department of Biosciences, Swansea University, Swansea, SA2 8PP, UK.
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Dobretsov S, Rittschof D. "Omics" Techniques Used in Marine Biofouling Studies. Int J Mol Sci 2023; 24:10518. [PMID: 37445696 DOI: 10.3390/ijms241310518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 06/16/2023] [Accepted: 06/19/2023] [Indexed: 07/15/2023] Open
Abstract
Biofouling is the growth of organisms on wet surfaces. Biofouling includes micro- (bacteria and unicellular algae) and macrofouling (mussels, barnacles, tube worms, bryozoans, etc.) and is a major problem for industries. However, the settlement and growth of some biofouling species, like oysters and corals, can be desirable. Thus, it is important to understand the process of biofouling in detail. Modern "omic" techniques, such as metabolomics, metagenomics, transcriptomics, and proteomics, provide unique opportunities to study biofouling organisms and communities and investigate their metabolites and environmental interactions. In this review, we analyze the recent publications that employ metagenomic, metabolomic, and proteomic techniques for the investigation of biofouling and biofouling organisms. Specific emphasis is given to metagenomics, proteomics and publications using combinations of different "omics" techniques. Finally, this review presents the future outlook for the use of "omics" techniques in marine biofouling studies. Like all trans-disciplinary research, environmental "omics" is in its infancy and will advance rapidly as researchers develop the necessary expertise, theory, and technology.
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Affiliation(s)
- Sergey Dobretsov
- Department of Marine Science and Fisheries, College of Agricultural and Marine Sciences, Sultan Qaboos University, Al Khoud 123, Muscat P.O. Box 34, Oman
| | - Daniel Rittschof
- Nicholas School of the Environment, Duke University, Beaufort, NC 28516, USA
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Summers S, Pek YS, Vinod DP, McDougald D, Todd PA, Birch WR, Rice SA. Bacterial biofilm colonization and succession in tropical marine waters are similar across different types of stone materials used in seawall construction. Front Microbiol 2022; 13:928877. [PMID: 35958146 PMCID: PMC9358718 DOI: 10.3389/fmicb.2022.928877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Accepted: 07/07/2022] [Indexed: 11/13/2022] Open
Abstract
Seawalls are important in protecting coastlines from currents, erosion, sea-level rise, and flooding. They are, however, associated with reduced biodiversity, due to their steep orientation, lack of microhabitats, and the materials used in their construction. Hence, there is considerable interest in modifying seawalls to enhance the settlement and diversity of marine organisms, as microbial biofilms play a critical role facilitating algal and invertebrate colonization. We assessed how different stone materials, ranging from aluminosilicates to limestone and concrete, affect biofilm formation. Metagenomic assessment of marine microbial communities indicated no significant impact of material on microbial diversity, irrespective of the diverse surface chemistry and topography. Based on KEGG pathway analysis, surface properties appeared to influence the community composition and function during the initial stages of biofilm development, but this effect disappeared by Day 31. We conclude that marine biofilms converged over time to a generic marine biofilm, rather than the underlying stone substrata type playing a significant role in driving community composition.
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Affiliation(s)
- Stephen Summers
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, Singapore
| | - Y. Shona Pek
- Institute of Materials Research and Engineering, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore
| | - Deepthi P. Vinod
- School of Bioscience and Technology, Vellore Institute of Technology, Vellore, India
| | - Diane McDougald
- Australian Institute for Microbiology and Infection, The University of Technology Sydney, Sydney, NSW, Australia
| | - Peter A. Todd
- Department of Biological Sciences, National University of Singapore, Singapore, Singapore
| | - William R. Birch
- Institute of Materials Research and Engineering, Agency for Science, Technology and Research (A*STAR), Singapore, Singapore
| | - Scott A. Rice
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, Singapore
- Agriculture and Food, Microbiomes for One Systems Health, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, ACT, Australia
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Abstract
Alteromonas is an opportunistic marine bacterium that persists in the global ocean and has important ecological significance. However, current knowledge about the diversity and ecology of alterophages (phages that infect Alteromonas) is lacking. Here, three similar phages infecting Alteromonas macleodii ATCC 27126T were isolated and physiologically characterized. Transmission electron microscopy revealed Siphoviridae morphology, with an oblate icosahedral head and a long noncontractile tail. Notably, these members displayed a small burst size (15–19 plaque-forming units/cell) yet an extensively broad host spectrum when tested on 175 Alteromonas strains. Such unique infection kinetics are potentially associated with discrepancies in codon usage bias from the host tRNA inventory. Phylogenetic analysis indicated that the three phages are closely evolutionarily related; they clustered at the species level and represent a novel genus. Three auxiliary metabolic genes with roles in nucleotide metabolism and putative biofilm dispersal were found in these phage genomes, which revealed important biogeochemical significance of these alterophages in marine ecosystems. Our isolation and characterization of these novel phages expand the current understanding of alterophage diversity, evolution, and phage–host interactions. IMPORTANCE The marine bacterium Alteromonas is prevalent in the global ocean with crucial ecological significance; however, little is known about the diversity and evolution of its bacteriophages that profoundly affect the bacterial communities. Our study characterized a novel genus of three newly isolated Alteromonas phages that exhibited a distinct infection strategy of broad host spectrum and small burst size. This strategy is likely a consequence of the viral trade-off between virulence and lysis profiles during phage–host coevolution, and our work provides new insight into viral evolution and infection strategies.
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Gujinović L, Maravić A, Kalinić H, Dželalija M, Šestanović S, Zanchi D, Šamanić I. Metagenomic analysis of pioneer biofilm-forming marine bacteria with emphasis on Vibrio gigantis adhesion dynamics. Colloids Surf B Biointerfaces 2022; 217:112619. [PMID: 35700566 DOI: 10.1016/j.colsurfb.2022.112619] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 05/23/2022] [Accepted: 06/06/2022] [Indexed: 11/17/2022]
Abstract
Marine biofilms occur frequently and spontaneously in seawater, on almost any submerged solid surface. At the early stages of colonization, it consists of bacteria and evolves into a more complex community. Using 16S rRNA amplicon sequencing and comparative metagenomics, the composition and predicted functional potential of one- to three-day old bacterial communities in surface biofilms were investigated and compared to that of seawater. This confirmed the autochthonous marine bacterium Vibrio gigantis as an early and very abundant biofilm colonizer, also functionally linked to the genes associated with cell motility, surface attachment, and communication via signaling molecules (quorum sensing), all crucial for biofilm formation. The dynamics of adhesion on a solid surface of V. gigantis alone was also monitored in controlled laboratory conditions, using a newly designed and easily implementable protocol. Resulting in a calculated percentage of bacteria-covered surface, a convincing tendency of spontaneous adhering was confirmed. From the multiple results, its quantified and reproducible adhesion dynamics will be used as a basis for future experiments involving surface modifications and coatings, with the goal of preventing adhesion.
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Affiliation(s)
- Luka Gujinović
- Faculty of Chemistry and Technology, University of Split, Croatia; Doctoral study of Biophysics, Faculty of Science, University of Split, Croatia
| | - Ana Maravić
- Faculty of Science, University of Split, Croatia
| | | | | | | | - Dražen Zanchi
- Laboratoire Matières et Systèmes Complexes, UMR 7057 du CNRS and Université de Paris Cité, Paris, France.
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Freckelton ML, Nedved BT, Cai YS, Cao S, Turano H, Alegado RA, Hadfield MG. Bacterial lipopolysaccharide induces settlement and metamorphosis in a marine larva. Proc Natl Acad Sci U S A 2022; 119:e2200795119. [PMID: 35467986 PMCID: PMC9651628 DOI: 10.1073/pnas.2200795119] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Accepted: 03/16/2022] [Indexed: 08/09/2023] Open
Abstract
New surfaces in the sea are quickly populated by dense communities of invertebrate animals, whose establishment and maintenance require site-specific settlement of larvae from the plankton. Larvae selectively settle in sites where they can metamorphose and thrive largely due to inductive cues from bacteria residing on these surfaces. However, the nature of the cues used to identify “right places” has remained enigmatic. Here, we demonstrate that lipopolysaccharide, the main component of the outer membrane of Gram-negative bacteria from the bacterium Cellulophaga lytica , induces metamorphosis for a marine worm. We then discuss the likelihood that lipopolysaccharide provides the variation necessary to explain settlement site selectivity for many of the bottom-living invertebrate animals that metamorphose in response to bacterial biofilms. How larvae of the many phyla of marine invertebrates find places appropriate for settlement, metamorphosis, growth, and reproduction is an enduring question in marine science. Biofilm-induced metamorphosis has been observed in marine invertebrate larvae from nearly every major marine phylum. Despite the widespread nature of this phenomenon, the mechanism of induction remains poorly understood. The serpulid polychaete Hydroides elegans is a well established model for investigating bacteria-induced larval development. A broad range of biofilm bacterial species elicit larval metamorphosis in H. elegans via at least two mechanisms, including outer membrane vesicles (OMVs) and complexes of phage-tail bacteriocins. We investigated the interaction between larvae of H. elegans and the inductive bacterium Cellulophaga lytica , which produces an abundance of OMVs but not phage-tail bacteriocins. We asked whether the OMVs of C. lytica induce larval settlement due to cell membrane components or through delivery of specific cargo. Employing a biochemical structure–function approach with a strong ecological focus, the cells and OMVs produced by C. lytica were interrogated to determine the class of the inductive compounds. Here, we report that larvae of H. elegans are induced to metamorphose by lipopolysaccharide produced by C. lytica . The widespread prevalence of lipopolysaccharide and its associated taxonomic and structural variability suggest it may be a broadly employed cue for bacterially induced larval settlement of marine invertebrates.
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Affiliation(s)
| | - Brian T. Nedved
- Kewalo Marine Laboratory, University of Hawaiʻi, Honolulu, HI 96813
| | - You-Sheng Cai
- Department of Pharmaceutical Sciences, Daniel K. Inouye College of Pharmacy, University of Hawaiʻi at Hilo, Hilo, HI 96720
- Department of Nephrology, Zhongnan Hospital of Wuhan University, School of Pharmaceutical Sciences, Wuhan University, Wuhan 430071, People’s Republic of China
| | - Shugeng Cao
- Department of Pharmaceutical Sciences, Daniel K. Inouye College of Pharmacy, University of Hawaiʻi at Hilo, Hilo, HI 96720
| | - Helen Turano
- Department of Oceanography, University of Hawaiʻi Mānoa, Honolulu, HI 96813
| | - Rosanna A. Alegado
- Department of Oceanography, University of Hawaiʻi Mānoa, Honolulu, HI 96813
- Sea Grant College Program, University of Hawaiʻi Mānoa, Honolulu, HI 96813
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Cavalcanti GS, Alker AT, Delherbe N, Malter KE, Shikuma NJ. The Influence of Bacteria on Animal Metamorphosis. Annu Rev Microbiol 2021; 74:137-158. [PMID: 32905754 DOI: 10.1146/annurev-micro-011320-012753] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The swimming larvae of many marine animals identify a location on the seafloor to settle and undergo metamorphosis based on the presence of specific surface-bound bacteria. While bacteria-stimulated metamorphosis underpins processes such as the fouling of ship hulls, animal development in aquaculture, and the recruitment of new animals to coral reef ecosystems, little is known about the mechanisms governing this microbe-animal interaction. Here we review what is known and what we hope to learn about how bacteria and the factors they produce stimulate animal metamorphosis. With a few emerging model systems, including the tubeworm Hydroides elegans, corals, and the hydrozoan Hydractinia, we have begun to identify bacterial cues that stimulate animal metamorphosis and test hypotheses addressing their mechanisms of action. By understanding the mechanisms by which bacteria promote animal metamorphosis, we begin to illustrate how, and explore why, the developmental decision of metamorphosis relies on cues from environmental bacteria.
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Affiliation(s)
- Giselle S Cavalcanti
- Viral Information Institute and Department of Biology, San Diego State University, San Diego, California 92182, USA; , , , ,
| | - Amanda T Alker
- Viral Information Institute and Department of Biology, San Diego State University, San Diego, California 92182, USA; , , , ,
| | - Nathalie Delherbe
- Viral Information Institute and Department of Biology, San Diego State University, San Diego, California 92182, USA; , , , ,
| | - Kyle E Malter
- Viral Information Institute and Department of Biology, San Diego State University, San Diego, California 92182, USA; , , , ,
| | - Nicholas J Shikuma
- Viral Information Institute and Department of Biology, San Diego State University, San Diego, California 92182, USA; , , , ,
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Espinel-Velasco N, Tobias-Hünefeldt SP, Karelitz S, Hoffmann LJ, Morales SE, Lamare MD. Reduced seawater pH alters marine biofilms with impacts for marine polychaete larval settlement. MARINE ENVIRONMENTAL RESEARCH 2021; 167:105291. [PMID: 33691257 DOI: 10.1016/j.marenvres.2021.105291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Revised: 02/22/2021] [Accepted: 02/23/2021] [Indexed: 06/12/2023]
Abstract
Ocean acidification (OA) can negatively affect early-life stages of marine organisms, with the key processes of larval settlement and metamorphosis potentially vulnerable to reduced seawater pH. Settlement success depends strongly on suitable substrates and environmental cues, with marine biofilms as key settlement inducers for a range of marine invertebrate larvae. This study experimentally investigated (1) how seawater pH determines growth and community composition of marine biofilms, and (2) whether marine biofilms developed under different pH conditions can alter settlement success in the New Zealand serpulid polychaete Galeolaria hystrix. Biofilms were developed under six pH(T) treatments (spanning from 7.0 to 8.1 [ambient]) in a flow-through system for up to 14 months. Biofilms of different ages (7, 10 and 14 months) were used to assay successful settlement of competent G. hystrix larvae reared under ambient conditions. Biofilm microbiomes were characterized through amplicon sequencing of the small subunit ribosomal rRNA gene (16S and 18S). Biofilm community composition was stable over time within each pH treatment and biofilm age did not affect larval settlement selectivity. Seawater pH treatment strongly influenced biofilm community composition, as well as subsequent settlement success when biofilms were presented to competent Galeolaria larvae. Exposure to biofilms incubated under OA-treatments caused a decrease in larval settlement of up to 40% compared to the ambient treatments. We observed a decrease in settlement on biofilms relative to ambient pH for slides incubated at pH 7.9 and 7.7. This trend was reversed at pH 7.4, resulting in high settlement, comparable to ambient biofilms. Settlement decreased on biofilms from pH 7.2, and no settlement was observed on biofilms from pH 7.0. For the first time, we show that long-term incubation of marine biofilms under a wide range of reduced seawater pH treatments can alter marine biofilms in such a way that settlement success in marine invertebrates can be compromised.
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Affiliation(s)
- Nadjejda Espinel-Velasco
- Department of Marine Science, University of Otago, Dunedin, 9054, New Zealand; Norwegian Polar Institute, Fram Centre, 9296, Tromsø, Norway.
| | | | - Sam Karelitz
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, NH, 03824, USA
| | - Linn J Hoffmann
- Botany Department, University of Otago, Dunedin, 9054, New Zealand
| | - Sergio E Morales
- Department of Microbiology and Immunology, University of Otago, Dunedin, 9054, New Zealand
| | - Miles D Lamare
- Department of Marine Science, University of Otago, Dunedin, 9054, New Zealand
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11
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Mugge RL, Salerno JL, Hamdan LJ. Microbial Functional Responses in Marine Biofilms Exposed to Deepwater Horizon Spill Contaminants. Front Microbiol 2021; 12:636054. [PMID: 33717029 PMCID: PMC7947620 DOI: 10.3389/fmicb.2021.636054] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 01/28/2021] [Indexed: 11/13/2022] Open
Abstract
Marine biofilms are essential biological components that transform built structures into artificial reefs. Anthropogenic contaminants released into the marine environment, such as crude oil and chemical dispersant from an oil spill, may disrupt the diversity and function of these foundational biofilms. To investigate the response of marine biofilm microbiomes from distinct environments to contaminants and to address microbial functional response, biofilm metagenomes were analyzed from two short-term microcosms, one using surface seawater (SSW) and the other using deep seawater (DSW). Following exposure to crude oil, chemical dispersant, and dispersed oil, taxonomically distinct communities were observed between microcosms from different source water challenged with the same contaminants and higher Shannon diversity was observed in SSW metagenomes. Marinobacter, Colwellia, Marinomonas, and Pseudoalteromonas phylotypes contributed to driving community differences between SSW and DSW. SSW metagenomes were dominated by Rhodobacteraceae, known biofilm-formers, and DSW metagenomes had the highest abundance of Marinobacter, associated with hydrocarbon degradation and biofilm formation. Association of source water metadata with treatment groups revealed that control biofilms (no contaminant) harbor the highest percentage of significant KEGG orthologs (KOs). While 70% functional similarity was observed among all metagenomes from both experiments, functional differences between SSW and DSW metagenomes were driven primarily by membrane transport KOs, while functional similarities were attributed to translation and signaling and cellular process KOs. Oil and dispersant metagenomes were 90% similar to each other in their respective experiments, which provides evidence of functional redundancy in these microbiomes. When interrogating microbial functional redundancy, it is crucial to consider how composition and function evolve in tandem when assessing functional responses to changing environmental conditions within marine biofilms. This study may have implications for future oil spill mitigation strategies at the surface and at depth and also provides information about the microbiome functional responses of biofilms on steel structures in the marine built environment.
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Affiliation(s)
- Rachel L Mugge
- Division of Coastal Sciences, School of Ocean Science and Engineering, University of Southern Mississippi, Ocean Springs, MS, United States
| | - Jennifer L Salerno
- Department of Environmental Science and Policy, George Mason University, Fairfax, VA, United States
| | - Leila J Hamdan
- Division of Coastal Sciences, School of Ocean Science and Engineering, University of Southern Mississippi, Ocean Springs, MS, United States
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Agostini VO, Muxagata E, Pinho GLL, Pessi IS, Macedo AJ. Bacteria-invertebrate interactions as an asset in developing new antifouling coatings for man-made aquatic surfaces. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 271:116284. [PMID: 33360655 DOI: 10.1016/j.envpol.2020.116284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Revised: 12/01/2020] [Accepted: 12/09/2020] [Indexed: 06/12/2023]
Abstract
Economic losses can result from biofouling establishment on man-made structures. Macrofouling causes damage to artificial substrates, which justifies the need for its control. However, the antifouling coatings employed nowadays are typically not safe for the environment. Microfouling can affect macrofouling colonization, and thus represents a potential target for alternative antifouling control. From both ecological and economical points of view, information on the ecology and interactions between micro- and macrofouling are crucial to develop successful and safe control strategies, which will prevent biofouling development on man-made structures while preserving water quality and the safety of non-target organisms. This study presents a metabarcoding analysis of biofilm-associated marine bacteria (16S-rRNA-gene) and fungi (ITS-region), with the aim to understand invertebrate settlement over time on hard substrates exposed to natural condition (Control) and two treatments (Antimicrobials and Antifouling Painted). Biofouling composition changed with exposure time (up to 12 days) and showed differences among Control and Antimicrobials and Painted treatments. Antimicrobial treatment influenced more the biofouling composition than traditional antifouling paint (Cu2O-based). Both treatments caused microbial resistance. Macrofouling establishment was strongly influenced by Gram-negative heterotrophic bacteria (mostly Proteobacteria and Bacteroidetes). Nevertheless, each macrofouling taxon settled in response to a specific biofilm bacterial composition, although other factors can also affect the biofouling community as the condition of the substrate. We suggest that proper friendly antifouling technologies should be focused on inhibiting bacterial biofilm adhesion.
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Affiliation(s)
- Vanessa Ochi Agostini
- Laboratório de Microcontaminantes Orgânicos e Ecotoxicologia Aquática - Instituto de Oceanografia da Universidade Federal do Rio Grande (FURG). Caixa Postal, 474, CEP: 96203-900, Rio Grande, RS, Brazil; Post-Doctoral fellow - Programa Nacional de Pós-Doutorado da Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (PNPD-CAPES), Programa de Pós-graduação em Oceanologia (PPGO), Brazil.
| | - Erik Muxagata
- Laboratório de Zooplâncton - Instituto de Oceanografia da Universidade Federal do Rio Grande (FURG). Av. Itália, Km 8, Caixa Postal, 474, 96203-900, Rio Grande, RS, Brazil.
| | - Grasiela Lopes Leães Pinho
- Laboratório de Microcontaminantes Orgânicos e Ecotoxicologia Aquática - Instituto de Oceanografia da Universidade Federal do Rio Grande (FURG). Caixa Postal, 474, CEP: 96203-900, Rio Grande, RS, Brazil.
| | - Igor Stelmach Pessi
- Department of Microbiology, University of Helsinki, Viikinkaari 9, 00014, Helsinki, Finland; Helsinki Institute of Sustainability Science, University of Helsinki, Yliopistonkatu 3, 00014, Helsinki, Finland.
| | - Alexandre José Macedo
- Laboratório de Biofilmes e Diversidade Microbiana - Faculdade de Farmácia e Centro de Biotecnologia da Universidade Federal do Rio Grande do Sul (UFRGS), Av. Ipiranga, 2752, Bairro Azenha, 90610-000, Porto Alegre, RS, Brazil.
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Taîbi A, Rivallan R, Broussolle V, Pallet D, Lortal S, Meile JC, Constancias F. Terroir Is the Main Driver of the Epiphytic Bacterial and Fungal Communities of Mango Carposphere in Reunion Island. Front Microbiol 2021; 11:619226. [PMID: 33584584 PMCID: PMC7874004 DOI: 10.3389/fmicb.2020.619226] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Accepted: 12/18/2020] [Indexed: 12/22/2022] Open
Abstract
The diversity of both bacterial and fungal communities associated with mango surface was explored using a metabarcoding approach targeting fungal ITS2 and bacterial 16S (V3-V4) genomic regions. Fruits were collected in Reunion Island from two different orchards according to a sampling method which allowed the effect of several pre-harvest factors such as geographical location (terroir), cultivars, fruit parts, tree position in the plot, fruit position on the tree (orientation and height), as well as the harvest date to be investigated. A total of 4,266,546 fungal and 2,049,919 bacterial reads were recovered then respectively assigned to 3,153 fungal and 24,087 to bacterial amplicon sequence variants (ASVs). Alpha and beta diversity, as well as differential abundance analyses revealed variations in both bacterial and fungal communities detected on mango surfaces depended upon the studied factor. Results indicated that Burkholderiaceae (58.8%), Enterobacteriaceae (5.2%), Pseudomonadaceae (4.8%), Sphingomonadaceae (4.1%), Beijerinckiaceae (3.5%), and Microbacteriaceae (3.1%) were the dominant bacterial families across all samples. The majority of fungal sequences were assigned to Mycosphaerellaceae (34.5%), Cladosporiaceae (23.21%), Aureobasidiaceae (13.09%), Pleosporaceae (6.92%), Trichosphaeriaceae (5.17%), and Microstromatales_fam_Incertae_sedis (4.67%). For each studied location, mango fruit from each cultivar shared a core microbiome, and fruits of the same cultivar harvested in two different locations shared about 80% fungal and bacterial family taxa. The various factors tested in this study affected bacterial and fungal taxa differently, suggesting that some taxa could act as geographical (terroir) markers and in some cases as cultivar fingerprints. The ranking of the factors investigated in the present study showed that in decreasing order of importance: the plot (terroir), cultivar, fruit parts, harvest date and the position of the fruits are respectively the most impacting factors of the microbial flora, when compared to the orientation and the fruit position (height) on the tree. Overall, these findings provided insights on both bacterial and fungal diversity associated with the mango surface, their patterns from intra-fruit scale to local scale and the potential parameters shaping the mango microbiota.
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Affiliation(s)
- Ahmed Taîbi
- CIRAD, UMR Qualisud, Saint-Pierre, France
- Qualisud, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, Université de La Réunion, Montpellier, France
| | - Ronan Rivallan
- CIRAD, UMR AGAP, Montpellier, France
- AGAP, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Véronique Broussolle
- INRAE, Avignon Université, Sécurité et Qualité des Produits d’Origine Végétale, Avignon, France
| | - Dominique Pallet
- Qualisud, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, Université de La Réunion, Montpellier, France
- CIRAD, UMR Qualisud, Montpellier, France
| | - Sylvie Lortal
- INRAE, Département Microbiologie et Chaine alimentaire, Jouy-en-Josas, France
| | - Jean-Christophe Meile
- CIRAD, UMR Qualisud, Saint-Pierre, France
- Qualisud, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, Université de La Réunion, Montpellier, France
| | - Florentin Constancias
- Qualisud, Univ Montpellier, Avignon Université, CIRAD, Institut Agro, Université de La Réunion, Montpellier, France
- CIRAD, UMR Qualisud, Montpellier, France
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Dobretsov S, Rittschof D. Love at First Taste: Induction of Larval Settlement by Marine Microbes. Int J Mol Sci 2020; 21:ijms21030731. [PMID: 31979128 PMCID: PMC7036896 DOI: 10.3390/ijms21030731] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Accepted: 01/20/2020] [Indexed: 02/07/2023] Open
Abstract
Marine biofilms are composed of many species of bacteria, unicellular algae, and protozoa. Biofilms can induce, inhibit, or have no effect on settlement of larvae and spores of algae. In this review, we focus on induction of larval settlement by marine bacteria and unicellular eukaryotes and review publications from 2010 to September 2019. This review provides insights from meta-analysis on what is known about the effect of marine biofilms on larval settlement. Of great interest is the impact of different components of marine biofilms, such as bacteria and diatoms, extracellular polymeric substances, quorum sensing signals, unique inductive compounds, exoenzymes, and structural protein degradation products on larval settlement and metamorphosis. Molecular aspects of larval settlement and impact of climate change are reviewed and, finally, potential areas of future investigations are provided.
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Affiliation(s)
- Sergey Dobretsov
- Centre of Excellence in Marine Biotechnology, Sultan Qaboos University, Al Khoud 123 P.O. Box 50, Muscat 123, Oman
- Department of Marine Science and Fisheries, College of Agricultural and Marine Sciences, Sultan Qaboos University, Al Khoud 123 P.O. Box 34, Muscat 123, Oman
- Correspondence:
| | - Daniel Rittschof
- Marine Science and Conservation, Marine Laboratory, Nicholas School, Duke University, 135 Duke Marine Lab Road, Beaufort, NC 28516, USA;
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The Flagellar Gene Regulates Biofilm Formation and Mussel Larval Settlement and Metamorphosis. Int J Mol Sci 2020; 21:ijms21030710. [PMID: 31973189 PMCID: PMC7036800 DOI: 10.3390/ijms21030710] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Revised: 01/11/2020] [Accepted: 01/13/2020] [Indexed: 12/16/2022] Open
Abstract
Biofilms are critical components of most marine systems and provide biochemical cues that can significantly impact overall community composition. Although progress has been made in the bacteria–animal interaction, the molecular basis of modulation of settlement and metamorphosis in most marine animals by bacteria is poorly understood. Here, Pseudoalteromonas marina showing inducing activity on mussel settlement and metamorphosis was chosen as a model to clarify the mechanism that regulates the bacteria–mussel interaction. We constructed a flagellin synthetic protein gene fliP deletion mutant of P. marina and checked whether deficiency of fliP gene will impact inducing activity, motility, and extracellular polymeric substances of biofilms. Furthermore, we examined the effect of flagellar proteins extracted from bacteria on larval settlement and metamorphosis. The deletion of the fliP gene caused the loss of the flagella structure and motility of the ΔfliP strain. Deficiency of the fliP gene promoted the biofilm formation and changed biofilm matrix by reducing β-polysaccharides and increasing extracellular proteins and finally reduced biofilm-inducing activities. Flagellar protein extract promoted mussel metamorphosis, and ΔfliP biofilms combined with additional flagellar proteins induced similar settlement and metamorphosis rate compared to that of the wild-type strain. These findings provide novel insight on the molecular interactions between bacteria and mussels.
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