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Tejada JV, Antoine PO, Münch P, Billet G, Hautier L, Delsuc F, Condamine FL. Bayesian Total-Evidence Dating Revisits Sloth Phylogeny and Biogeography: A Cautionary Tale on Morphological Clock Analyses. Syst Biol 2024; 73:125-139. [PMID: 38041854 PMCID: PMC11129595 DOI: 10.1093/sysbio/syad069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 11/06/2023] [Accepted: 11/14/2023] [Indexed: 12/04/2023] Open
Abstract
Combining morphological and molecular characters through Bayesian total-evidence dating allows inferring the phylogenetic and timescale framework of both extant and fossil taxa, while accounting for the stochasticity and incompleteness of the fossil record. Such an integrative approach is particularly needed when dealing with clades such as sloths (Mammalia: Folivora), for which developmental and biomechanical studies have shown high levels of morphological convergence whereas molecular data can only account for a limited percentage of their total species richness. Here, we propose an alternative hypothesis of sloth evolution that emphasizes the pervasiveness of morphological convergence and the importance of considering the fossil record and an adequate taxon sampling in both phylogenetic and biogeographic inferences. Regardless of different clock models and morphological datasets, the extant sloth Bradypus is consistently recovered as a megatherioid, and Choloepus as a mylodontoid, in agreement with molecular-only analyses. The recently extinct Caribbean sloths (Megalocnoidea) are found to be a monophyletic sister-clade of Megatherioidea, in contrast to previous phylogenetic hypotheses. Our results contradict previous morphological analyses and further support the polyphyly of "Megalonychidae," whose members were found in five different clades. Regardless of taxon sampling and clock models, the Caribbean colonization of sloths is compatible with the exhumation of islands along Aves Ridge and its geological time frame. Overall, our total-evidence analysis illustrates the difficulty of positioning highly incomplete fossils, although a robust phylogenetic framework was recovered by an a posteriori removal of taxa with high percentages of missing characters. Elimination of these taxa improved topological resolution by reducing polytomies and increasing node support. However, it introduced a systematic and geographic bias because most of these incomplete specimens are from northern South America. This is evident in biogeographic reconstructions, which suggest Patagonia as the area of origin of many clades when taxa are underrepresented, but Amazonia and/or Central and Southern Andes when all taxa are included. More generally, our analyses demonstrate the instability of topology and divergence time estimates when using different morphological datasets and clock models and thus caution against making macroevolutionary inferences when node support is weak or when uncertainties in the fossil record are not considered.
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Affiliation(s)
- Julia V Tejada
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA
- Institut des Sciences de l’Évolution de Montpellier, UMR 5554, Université de Montpellier, CNRS, IRD, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
| | - Pierre-Olivier Antoine
- Institut des Sciences de l’Évolution de Montpellier, UMR 5554, Université de Montpellier, CNRS, IRD, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
| | - Philippe Münch
- Géosciences Montpellier, UMR 5243, Université de Montpellier, CNRS, Université des Antilles, Place Eugène Bataillon, 34095 Montpellier, France
| | - Guillaume Billet
- Centre de Recherche en Paléontologie—Paris, CR2P—UMR 7207, Muséum National d’Histoire Naturelle, CNRS, Sorbonne Université, 8 rue Buffon 75005, Paris
| | - Lionel Hautier
- Institut des Sciences de l’Évolution de Montpellier, UMR 5554, Université de Montpellier, CNRS, IRD, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
| | - Frédéric Delsuc
- Institut des Sciences de l’Évolution de Montpellier, UMR 5554, Université de Montpellier, CNRS, IRD, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
| | - Fabien L Condamine
- Institut des Sciences de l’Évolution de Montpellier, UMR 5554, Université de Montpellier, CNRS, IRD, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France
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Gaudin TJ, Scaife T. Cranial osteology of a juvenile specimen of Acratocnus ye (Mammalia, Xenarthra, Folivora) and its ontogenetic and phylogenetic implications. Anat Rec (Hoboken) 2023; 306:607-637. [PMID: 36054593 DOI: 10.1002/ar.25062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Revised: 08/18/2022] [Accepted: 08/18/2022] [Indexed: 11/09/2022]
Abstract
The present study comprises a description of the skull and jaw anatomy of a juvenile specimen of the Antillean sloth Acratocnus ye, from the Holocene of Haiti. Detailed descriptions and illustrations are provided of the skull bones and their sutural connections, which normally fuse in adults. Descriptions are also provided for the mandible and ear ossicles, as well as endocranial surfaces and sinuses exposed by breaks. The anatomy of our juvenile A. ye is compared to that of adult A. ye to assess ontogenetic changes in the skull. Several of these ontogenetic features are significant new observations that impact the relationships within Xenarthra as a whole, or between Xenarthrans and other placental mammals, most notably, the presence of a separate mesethmoid element, the presence of alveoli for a lower deciduous canine and anterior incisor, and the presence of separate rostral and caudal entotympanic elements. A full list of such changes are provided. In addition, the specimen provides information on phylogenetically relevant characters, including features unique to the genus Acratocnus, and features of the clade Choloepodini, including Acratocnus, the smaller extinct Antillean sloth Neocnus, and the extant two-toed sloth Choloepus. Contrary to previous studies, Acratocnus shares as many features with Choloepus as it does with its fellow Antillean form Neocnus in the present study, which is consistent with current morphology-based phylogenetic hypotheses regarding the relationships within Choloepodini. The current study highlights the need for further anatomical and phylogenetic investigations of Antillean sloths (Megalocnidae/Megalonychidae), and juvenile sloths in general.
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Affiliation(s)
- Timothy J Gaudin
- Department of Biology, Geology & Environmental Science, University of Tennessee at Chattanooga, Chattanooga, Tennessee, USA
| | - Thomas Scaife
- Department of Geosciences, East Tennessee State University, Johnson City, Tennessee, USA
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Gavazzi LM, Kjosness KM, Reno PL. Ossification pattern of the unusual pisiform in two-toed (Choloepus) and three-toed sloths (Bradypus). Anat Rec (Hoboken) 2021; 305:1804-1819. [PMID: 34779120 DOI: 10.1002/ar.24832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 10/14/2021] [Accepted: 10/15/2021] [Indexed: 11/06/2022]
Abstract
Two-toed (Choloepus sp.) and three-toed (Bradypus sp.) sloths possess short, rounded pisiforms that are rare among mammals and differ from other members of Xenarthra like the giant anteater (Myrmecophaga tridactyla) which retain elongated, rod-like pisiforms in common with most mammals. Using photographs, radiographs, and μCT, we assessed ossification patterns in the pisiform and the paralogous tarsal, the calcaneus, for two-toed sloths, three-toed sloths, and giant anteaters to determine the process by which pisiform reduction occurs in sloths and compare it to other previously studied examples of pisiform reduction in humans and orangutans. Both extant sloth genera achieve pisiform reduction through the loss of a secondary ossification center and the likely disruption of the associated growth plate based on an unusually porous subchondral surface. This represents a third unique mechanism of pisiform reduction among mammals, along with primary ossification center loss in humans and retention of two ossification centers with likely reduced growth periods in orangutans. Given the remarkable similarities between two-toed and three-toed sloth pisiform ossification patterns and the presence of pisiform reduction in fossil sloths, extant sloth pisiform morphology does not appear to represent a recent convergent adaptation to suspensory locomotion, but instead is likely to be an ancestral trait of Folivora that emerged early in the radiation of extant and fossil sloths.
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Affiliation(s)
- Lia M Gavazzi
- School of Biomedical Sciences, Kent State University, Kent, Ohio, USA.,Musculoskeletal Research Group, Department of Anatomy and Neurobiology, Northeast Ohio Medical University, Rootstown, Ohio, USA
| | - Kelsey M Kjosness
- Department of Bio-Medical Sciences, Philadelphia College of Osteopathic Medicine, Philadelphia, Pennsylvania, USA
| | - Philip L Reno
- Department of Bio-Medical Sciences, Philadelphia College of Osteopathic Medicine, Philadelphia, Pennsylvania, USA
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Esquivel DA, Maestri R, Santana SE. Evolutionary implications of dental anomalies in bats. Evolution 2021; 75:1087-1096. [PMID: 33742462 DOI: 10.1111/evo.14211] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Revised: 02/05/2021] [Accepted: 02/17/2021] [Indexed: 01/17/2023]
Abstract
The gain or loss of anatomical features is an important mechanism of morphological evolution and ecological adaptation. Dental anomalies-the loss or gain of teeth-are widespread and a potential source of craniodental specialization among mammals, yet their macroevolutionary patterns have been rarely explored. We present the first phylogenetic comparative study of dental anomalies across the second largest mammal Order, Chiroptera (bats). We conducted an extensive literature review and surveyed a large sample of museum specimens to analyze the types and prevalence of dental anomalies across bats, and performed phylogenetic comparative analyses to investigate the role of phylogenetic history and dietary specialization on incidence of dental anomalies. We found dental anomalies have a significant phylogenetic signal, suggesting they are not simply the result of idiosyncratic mutations or random developmental disorders, but may have ancestral genetic origins or result from shared developmental pathways among closely related species. The incidence of dental anomalies was not associated with diet categories, suggesting no effect of craniodental specialization on dental anomalies across bats. Our results give insight into the macroevolutionary patterns of dental anomalies in bats, and provide a foundation for investigating new hypotheses underlying the evolution of dental variation and diversity in mammals.
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Affiliation(s)
- Diego A Esquivel
- Programa de Pós-Graduação em Biologia Animal, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, 91501-970, Brazil.,Fundación Kurupira, Bogotá, DC, 110921, Colombia
| | - Renan Maestri
- Department of Ecology, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, 91501-970, Brazil.,Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, Illinois, 60605
| | - Sharlene E Santana
- Department of Biology, University of Washington, Seattle, Washington, 98195.,Burke Museum of Natural History and Culture, University of Washington, Seattle, Washington, 98195
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Caccavo A, Weksler M. Mesial hyperdontia in Sigmodontinae (Rodentia: Cricetidae), with comments on the evolution of the anteroconid in Myomorpha. MAMMALIA 2019. [DOI: 10.1515/mammalia-2018-0162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Supernumerary teeth are common dental anomalies reported in rodents, mainly occurring distally to molars. We report the first case of mesial hyperdontia in wild-caught sigmodontine: a simplified tooth anterior to the right first lower molar in Neacomys amoenus. It affected the first molar morphology, which exhibits an underdeveloped mesial region with a reduced anterior conulid, a similar pattern observed in early known myomorph fossils, including lineages that still possess the last premolar. However, only lineages without premolar display an elongated first lower molar with a large anteroconid, as observed in extant Myomorpha. During the odontogenesis in myomorphs, the posteriormost vestigial diastemal tooth bud, located at the same locus of the last lower premolar, has its development arrested and merges with the cap of the first molar. This process might have contributed to the development of an increased anteroconid in this lineage. The abnormal Neacomys’ atavistic phenotype corroborates the hypothesis that the absorption of the primordium of the last lower premolar had played an important role in the development of first molar’s mesial region. Additionally, it also might have promoted the evolutionary transition from a reduced conulid into an enlarged anteroconid, as deduced from the fossil record and developmental evidence
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Affiliation(s)
- Aldo Caccavo
- Universidade Federal do Rio de Janeiro, Museu Nacional , Programa de Pós-Graduação em Zoologia , Rio de Janeiro, RJ 20940-040 , Brazil
- Universidade Federal do Rio de Janeiro, Museu Nacional , Departamento de Vertebrados, Setor de Mastozoologia , Rio de Janeiro, RJ 20940-040 , Brazil
| | - Marcelo Weksler
- Universidade Federal do Rio de Janeiro, Museu Nacional , Departamento de Vertebrados, Setor de Mastozoologia , Rio de Janeiro, RJ 20940-040 , Brazil
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Coutier F, Hautier L, Cornette R, Amson E, Billet G. Orientation of the lateral semicircular canal in Xenarthra and its links with head posture and phylogeny. J Morphol 2017; 278:704-717. [PMID: 28185320 DOI: 10.1002/jmor.20665] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Revised: 01/10/2017] [Accepted: 01/23/2017] [Indexed: 02/06/2023]
Abstract
The orientation of the semicircular canals of the inner ear in the skull of vertebrates is one of the determinants of the capacity of this system to detect a given rotational movement of the head. Past functional studies on the spatial orientation of the semicircular canals essentially focused on the lateral semicircular canal (LSC), which is supposedly held close to horizontal during rest and/or alert behaviors. However, they generally investigated this feature in only a few and distantly related taxa. Based on 3D-models reconstructed from µCT-scans of skulls, we examined the diversity of orientations of the LSC within one of the four major clades of placental mammals, that is, the superorder Xenarthra, with a data set that includes almost all extant genera and two extinct taxa. We observed a wide diversity of LSC orientations relative to the basicranium at both intraspecific and interspecific scales. The estimated phylogenetic imprint on the orientation of the LSC was significant but rather low within the superorder, though some phylogenetic conservatism was detected for armadillos that were characterized by a strongly tilted LSC. A convergence between extant suspensory sloths was also detected, both genera showing a weakly tilted LSC. Our preliminary analysis of usual head posture in extant xenarthrans based on photographs of living animals further revealed that the LSC orientation in armadillos is congruent with a strongly nose-down head posture. It also portrayed a more complex situation for sloths and anteaters. Finally, we also demonstrate that the conformation of the cranial vault and nuchal crests as well as the orientation of the posterior part of the petrosal may covary with the LSC orientation in Xenarthra. Possible inferences for the head postures of extinct xenarthrans such as giant ground sloths are discussed in the light of these results.
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Affiliation(s)
- Florence Coutier
- Department of Origines et évolution, Sorbonne Universités, CR2P, UMR CNRS 7207, Univ Paris 06, Muséum national d'Histoire naturelle, 8 rue Buffon, Paris, 75005, France
| | - Lionel Hautier
- Department of Forme, Institut des Sciences de l'Evolution de Montpellier, Université Montpellier, CNRS, IRD, EPHE, Cc 064; place Eugène Bataillon, Montpellier Cedex 5, 34095, France
| | - Raphaël Cornette
- Department of Origines et évolution, Institut de Systématique, Évolution, Biodiversité (ISYEB) - UMR 7205 - CNRS, MNHN, UPMC, EPHE- Muséum national d'Histoire naturelle - Sorbonne Universités, 57 rue Cuvier, CP 30, 75005, Paris, France
| | - Eli Amson
- Humboldt-Universität, AG Morphologie und Formengeschichte, Bild Wissen Gestaltung - ein interdisziplinäres Labor & Institut für Biologie, Philippstraße, 12/13, Berlin, D-10115, Germany
| | - Guillaume Billet
- Department of Origines et évolution, Sorbonne Universités, CR2P, UMR CNRS 7207, Univ Paris 06, Muséum national d'Histoire naturelle, 8 rue Buffon, Paris, 75005, France
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The hidden teeth of sloths: evolutionary vestiges and the development of a simplified dentition. Sci Rep 2016; 6:27763. [PMID: 27297516 PMCID: PMC4906291 DOI: 10.1038/srep27763] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2016] [Accepted: 05/24/2016] [Indexed: 12/26/2022] Open
Abstract
Xenarthrans are unique among mammals in retaining simplified teeth that are rootless and homodont, which makes it difficult to determine dental homologies. We apply computerized tomography to prenatal developmental series of extant sloths, Bradypus and Choloepus, to further elucidate the patterns of morphological variation in their dentition. We also propose new criteria based on sequences of dental mineralization, and the presence of vestigial teeth, to distinguish between caniniforms and postcaniniforms. We report for the first time the presence of vestigial incisors in Bradypus. We also show the presence of a vestigial tooth in front of the lower caniniform in both extant sloth genera and the existence of two generations for the upper caniniform in Choloepus. The study of their sequence of mineralization indicates that the lower and upper caniniform teeth are not homologous in sloths, and suggests that upper caniniforms are not homologous between the two extant sloth genera. Our results show that assessing the developmental processes and functional constraints remains crucial to understand the dental variations observed in sloths, and more generally, tooth class homology issues in mammals. Applied to the tooth row of all extinct sloths, these developmental data illuminate a potentially ancestral dental formula for sloths.
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Chemisquy MA, Martin GM. Dental anomalies in Didelphis albiventris (Mammalia, Marsupialia, Didelphidae) from Argentina, Brazil and Uruguay. IHERINGIA. SERIE ZOOLOGIA 2016. [DOI: 10.1590/1678-4766e2016023] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
ABSTRACT Dental anomalies have been investigated and reported for most orders of mammals, including marsupials. Previous works in Didelphis albiventris Lund, 1840 only described one kind of malformation or just a few observations from some collections, thus the type and presence of anomalies for this species was underestimated. The aim of this contribution is to describe and analyze several dental anomalies found in specimens of Didelphis albiventris from Argentina, Uruguay and Brazil. Dental anomalies were classified in three categories: supernumerary or missing teeth, morphological anomalies in size and shape, and teeth in unusual positions. We found 32 individuals of D. albiventris with anomalies out of 393 analyzed specimens (8.14%), some specimens with more than one anomaly. A similar proportion of specimens from Argentina and Uruguay presented anomalies, while in specimens from Brazil anomalies were less common. Anomalies were more commonly found in the upper toothrow and in molars, being supernumerary teeth and molars with unusual crown-shape the most common ones. The percentage of specimens with anomalies found for D. albiventris is higher than previously reported for the species, and other Didelphimorphia. Inbreeding and limited gene flow do not appear as possible explanations for the elevated percentage of anomalies, especially due to the ecological characteristics of Didelphis albiventris. Developmental instability and fluctuating asymmetry could be some of the causes for the anomalies found in this species, mostly since the habitat used by D. albiventris tends to be unstable and disturbed. Dental anomalies were mostly found in areas of the toothrow where occlusion is relaxed or does not prevent teeth from interlocking during mastication, and consequently have no functional value.
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Affiliation(s)
- M. Amelia Chemisquy
- Centro Regional de Investigaciones Científicas y Transferencia Tecnológica de La Rioja (CRILAR), Argentina
| | - Gabriel M. Martin
- Centro de Investigación Esquel de Montaña y Estepa Patagónicas, Argentina
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