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Pârâu LG, Wink M. Common patterns in the molecular phylogeography of western palearctic birds: a comprehensive review. JOURNAL OF ORNITHOLOGY 2021; 162:937-959. [PMID: 34007780 PMCID: PMC8118378 DOI: 10.1007/s10336-021-01893-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/03/2020] [Revised: 04/26/2021] [Accepted: 05/02/2021] [Indexed: 06/12/2023]
Abstract
UNLABELLED A plethora of studies have offered crucial insights in the phylogeographic status of Western Palearctic bird species. However, an overview integrating all this information and analyzing the combined results is still missing. In this study, we compiled all published peer-reviewed and grey literature available on the phylogeography of Western Palearctic bird species. Our literature review indicates a total number of 198 studies, with the overwhelming majority published as journal articles (n = 186). In total, these literature items offer information on 145 bird species. 85 of these species are characterized by low genetic differentiation, 46 species indicate genetic variation but no geographic structuring i.e. panmixia, while 14 species show geographically distinct lineages and haplotypes. Majority of bird species inhabiting the Western Palearctic display genetic admixture. The glaciation cycles in the past few million years were pivotal factors in shaping this situation: during warm periods many species expanded their distribution range to the north over wide areas of Eurasia; whereas, during ice ages most areas were no longer suitable and species retreated to refugia, where lineages mixed. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s10336-021-01893-x.
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Affiliation(s)
- Liviu G. Pârâu
- Institute of Pharmacy and Molecular Biotechnology, Department Biology, Heidelberg University, Im Neuenheimer Feld 364, 4 OG, Heidelberg, Germany
- Present Address: SARS-CoV-2 Data Evaluation Office, Eurofins Genomics Europe Applied Genomics GmbH, Anzinger Straße 7a, 85560 Ebersberg, Germany
| | - Michael Wink
- Institute of Pharmacy and Molecular Biotechnology, Department Biology, Heidelberg University, Im Neuenheimer Feld 364, 4 OG, Heidelberg, Germany
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2
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Norambuena HV, Els P, Victoriano PF, Knowles L. Genome‐wide DNA and phenotypic information supports recent colonization of South American grasslands by Correndera Pipit (Aves, Motacillidae). ZOOL SCR 2021. [DOI: 10.1111/zsc.12485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Paul Els
- Department of Biological Sciences and Museum of Natural Science Louisiana State University Baton Rouge LA USA
- Groningen Institute for Evolutionary Life Sciences University of Groningen Groningen The Netherlands
| | - Pedro F. Victoriano
- Departamento de Zoología Facultad de Ciencias Naturales y Oceanográficas Universidad de Concepción Concepción Chile
| | - Lacey Knowles
- Department of Ecology and Evolutionary Biology Museum of Zoology University of Michigan Ann Arbor MI USA
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3
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Pons J, Campión D, Chiozzi G, Ettwein A, Grangé J, Kajtoch Ł, Mazgajski TD, Rakovic M, Winkler H, Fuchs J. Phylogeography of a widespread Palaearctic forest bird species: The White‐backed Woodpecker (Aves, Picidae). ZOOL SCR 2020. [DOI: 10.1111/zsc.12466] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jean‐Marc Pons
- Institut de Systématique, Evolution, Biodiversité CNRS MNHN UPMC EPHE Sorbonne Universités Muséum National d’Histoire Naturelle, UMR 7205 Paris Cedex France
| | - David Campión
- Área de Biodiversidad, Biodibertsitate Arloa, Padre Adoain Pamplona‐Iruñea Spain
| | | | | | | | - Łukasz Kajtoch
- Institute of Systematics and Evolution of Animals Polish Academy of Sciences Kraków Poland
| | | | | | - Hans Winkler
- Department of Integrative Biology and Evolution Konrad Lorenz‐Institute of Ethology Vienna Austria
| | - Jérôme Fuchs
- Institut de Systématique, Evolution, Biodiversité CNRS MNHN UPMC EPHE Sorbonne Universités Muséum National d’Histoire Naturelle, UMR 7205 Paris Cedex France
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4
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Zuccon D, Pons JM, Boano G, Chiozzi G, Gamauf A, Mengoni C, Nespoli D, Olioso G, Pavia M, Pellegrino I, Raković M, Randi E, Rguibi Idrissi H, Touihri M, Unsöld M, Vitulano S, Brambilla M. Type specimens matter: new insights on the systematics, taxonomy and nomenclature of the subalpine warbler (Sylvia cantillans) complex. Zool J Linn Soc 2020. [DOI: 10.1093/zoolinnean/zlz169] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
AbstractWe revise the taxonomy of the Sylvia cantillans complex, a group of phenotypically distinct warblers with mainly parapatric distributions around a large part of the Mediterranean basin. We redefine the species limits using a combination of mitochondrial and nuclear markers and we objectively link available names to the genetically defined lineages by genotyping the surviving type specimens. In addition, the study of archival documents clarifies the exact composition of type series and provides further evidence for the identification of lost types. These results support the recognition of three species-level taxa: Moltoni’s warbler, Sylvia subalpina (north-central Italy, Corsica, Sardinia and the Balearics); the western subalpine warbler, S. iberiae (North Africa, Iberia, southern France and extreme north-west Italy); and the eastern subalpine warbler, S. cantillans, with subspecies S. cantillans cantillans (southern Italy, Sicily) and S. cantillans albistriata (Balkans, Greece, western Turkey).
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Affiliation(s)
- Dario Zuccon
- Institut de Systématique, Evolution, Biodiversité (ISYEB), UMR7205 CNRS MNHN UPMC EPHE Sorbonne Université, Muséum National d’Histoire Naturelle, Paris, France
| | - Jean-Marc Pons
- Institut de Systématique, Evolution, Biodiversité (ISYEB), UMR7205 CNRS MNHN UPMC EPHE Sorbonne Université, Muséum National d’Histoire Naturelle, Paris, France
| | | | | | - Anita Gamauf
- Natural History Museum Vienna, Bird Collection, Vienna, Austria
| | - Chiara Mengoni
- Area per la Genetica della Conservazione, Istituto Superiore per la Protezione e la Ricerca Ambientale (ISPRA), Ozzano dell’Emilia (BO), Italy
| | - Davide Nespoli
- Area per la Genetica della Conservazione, Istituto Superiore per la Protezione e la Ricerca Ambientale (ISPRA), Ozzano dell’Emilia (BO), Italy
- Dipartimento di Bioscienze, Università degli Studi di Milano, Milano, Italy
| | | | - Marco Pavia
- Museo di Geologia e Paleontologia, Dipartimento di Scienze della Terra, Università degli Studi di Torino, Torino, Italy
| | - Irene Pellegrino
- Dipartimento di Scienze e Innovazione Tecnologica, Università del Piemonte Orientale, Alessandria, Italy
| | - Marko Raković
- Natural History Museum of Belgrade, Belgrade, Serbia
| | - Ettore Randi
- Dipartimento Scienze Biologiche, Geologiche ed Ambientali, Università di Bologna, Bologna, Italy
- Department 18/Section of Environmental Engineering, Aalborg University, Aalborg, Denmark
| | - Hamid Rguibi Idrissi
- École Supérieure de Technologie, Université Ibn Zohr, Laâyoune, Morocco
- Laboratoire ‘Biodiversité, Écologie et Génome’, Faculté des Sciences de Rabat, Rabat, Morocco
| | - Moez Touihri
- Laboratoire de Recherche de Diversité, Gestion et Conservation des Systèmes, Faculté des Sciences de Tunis, Université de Tunis El Manar, Tunis, Tunisia
| | - Markus Unsöld
- Bavarian State Collection of Zoology, Section Ornithology, Munich, Germany
| | | | - Mattia Brambilla
- Fondazione Lombardia per l’Ambiente, Settore biodiversità e aree protette, Seveso (MB), Italy
- Museo delle Scienze, Sezione Zoologia dei Vertebrati, Corso del Lavoro e della Scienza 3, Trento, Italy
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Pons JM, Cibois A, Fournier J, Fuchs J, Olioso G, Thibault JC. Gene flow and genetic divergence among mainland and insular populations across the south-western range of the Eurasian treecreeper ( Certhia familiaris, Aves). Biol J Linn Soc Lond 2019. [DOI: 10.1093/biolinnean/bly200] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Jean-Marc Pons
- Institut Systématique, Evolution, Biodiversité (ISYEB), Muséum national d’Histoire naturelle, CNRS, Sorbonne Université, EPHE, Paris, France
| | - Alice Cibois
- Department of Mammalogy and Ornithology, Natural History Museum of Geneva, Geneva, Switzerland
| | - Jérôme Fournier
- Centre de Recherche sur la Biologie des Populations d’Oiseaux, Centre d’Ecologie et des Sciences de la Conservation (CESCO), Muséum national d’Histoire naturelle, CNRS, Sorbonne Université, Paris, France
| | - Jérôme Fuchs
- Institut Systématique, Evolution, Biodiversité (ISYEB), Muséum national d’Histoire naturelle, CNRS, Sorbonne Université, EPHE, Paris, France
| | | | - Jean-Claude Thibault
- Institut Systématique, Evolution, Biodiversité (ISYEB), Muséum national d’Histoire naturelle, CNRS, Sorbonne Université, EPHE, Paris, France
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Chen YC, Nazarizadeh M, Lei FM, Yang XJ, Yao CT, Dong F, Dong L, Zou FS, Drovetski SV, Liu Y, Huang CC, Hung CM. The niches of nuthatches affect their lineage evolution differently across latitude. Mol Ecol 2018; 28:803-817. [PMID: 30565765 DOI: 10.1111/mec.14980] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2018] [Revised: 12/07/2018] [Accepted: 12/10/2018] [Indexed: 11/28/2022]
Abstract
Ecological niche evolution can promote or hinder the differentiation of taxa and determine their distribution. Niche-mediated evolution may differ among climatic regimes, and thus, species that occur across a wide latitudinal range offer a chance to test these heterogeneous evolutionary processes. In this study, we examine (a) how many lineages have evolved across the continent-wide range of the Eurasian nuthatch (Sitta europaea), (b) whether the lineages' niches are significantly divergent or conserved and (c) how their niche evolution explains their geographic distribution. Phylogenetic reconstruction and ecological niche models (ENMs) showed that the Eurasian nuthatch contained six parapatric lineages that diverged within 2 Myr and did not share identical climatic niches. However, the niche discrepancy between these distinct lineages was relatively conserved compared with the environmental differences between their ranges and thus was unlikely to drive lineage divergence. The ENMs of southern lineages tended to cross-predict with their neighbouring lineages whereas those of northern lineages generally matched with their abutting ranges. The coalescence-based analyses revealed more stable populations for the southern lineages than the northern ones during the last glaciation cycle. In contrast to the overlapping ENMs, the smaller parapatric distribution suggests that the southern lineages might have experienced competitive exclusion to prevent them from becoming sympatric. On the other hand, the northern lineages have expanded their ranges and their current abutting distribution might have resulted from lineages adapting to different climatic conditions in allopatry. This study suggests that niche evolution may affect lineage distribution in different ways across latitude.
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Affiliation(s)
- Yu-Chi Chen
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | | | - Fu-Min Lei
- Chinese Academy of Sciences, Institute of Zoology, Beijing, China
| | - Xiao-Jun Yang
- Kunming Institute Zoology, Chinese Academy of Sciences, Kunming, China
| | - Cheng-Te Yao
- Division of Zoology, Endemic Species Research Institute, Nantou, Taiwan
| | - Feng Dong
- Kunming Institute Zoology, Chinese Academy of Sciences, Kunming, China
| | - Lu Dong
- Department of Life Science, Beijing Normal University, Beijing, China
| | - Fa-Sheng Zou
- South China Institute of Endangered Animals, Guangzhou, China
| | - Sergei V Drovetski
- Laboratories of Analytical Biology, National Museum of Natural History, Smithsonian Institution, Washington, District of Columbia
| | - Yang Liu
- State Key Laboratory of Biocontrol, Department of Ecology and School of Life Sciences, Sun Yat-sen University, Guangzhou, China
| | | | - Chih-Ming Hung
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
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7
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Hung C, Drovetski SV, Zink RM. The roles of ecology, behaviour and effective population size in the evolution of a community. Mol Ecol 2017; 26:3775-3784. [DOI: 10.1111/mec.14152] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2016] [Revised: 04/14/2017] [Accepted: 04/17/2017] [Indexed: 01/06/2023]
Affiliation(s)
- Chih‐Ming Hung
- Biodiversity Research Center Academia Sinica Taipei Taiwan
| | - Sergei V. Drovetski
- Division of Birds National Museum of Natural History Smithsonian Institution Washington DC USA
| | - Robert M. Zink
- School of Natural Resources Nebraska State Museum, and School of Biological Sciences University of Nebraska Lincoln NE USA
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8
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Multilocus approach reveals an incipient differentiation process in the Stone-curlew, Burhinus oedicnemus around the Mediterranean basin. CONSERV GENET 2016. [DOI: 10.1007/s10592-016-0894-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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9
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Alaei Kakhki N, Aliabadian M, Schweizer M. Out of Africa: biogeographic history of the open-habitat chats (Aves, Muscicapidae: Saxicolinae) across arid areas of the old world. ZOOL SCR 2016. [DOI: 10.1111/zsc.12151] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Niloofar Alaei Kakhki
- Department of Biology; Faculty of Science; Ferdowsi University of Mashhad; Mashhad Iran
| | - Mansour Aliabadian
- Department of Biology; Faculty of Science; Ferdowsi University of Mashhad; Mashhad Iran
- Research Department of Zoological Innovations; Institute of Applied Zoology; Faculty of Science; Ferdowsi University of Mashhad; Mashhad Iran
| | - Manuel Schweizer
- Naturhistorisches Museum der Burgergemeinde Bern; Bernastrasse 15 CH 3005 Bern Switzerland
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10
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Li G, Peng Z, Zhang R, Tang Y, Tong C, Feng C, Zhang C, Zhao K. Mito-nuclear phylogeography of the cyprinid fishGymnodiptychus dybowskiiin the arid Tien Shan region of Central Asia. Biol J Linn Soc Lond 2015. [DOI: 10.1111/bij.12724] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Guogang Li
- Key Laboratory of Adaptation and Evolution of Plateau Biota; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
- Laboratory of Plateau Fish Evolutionary and Functional Genomics; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
- University of Chinese Academy of Sciences; Beijing China
| | - Zuogang Peng
- Key Laboratory of Freshwater Fish; Reproduction and Development (Ministry of Education); Southwest University School of Life Sciences; Chongqing China
| | - Renyi Zhang
- Key Laboratory of Adaptation and Evolution of Plateau Biota; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
- Laboratory of Plateau Fish Evolutionary and Functional Genomics; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
- University of Chinese Academy of Sciences; Beijing China
| | - Yongtao Tang
- Key Laboratory of Adaptation and Evolution of Plateau Biota; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
- Laboratory of Plateau Fish Evolutionary and Functional Genomics; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
- University of Chinese Academy of Sciences; Beijing China
| | - Chao Tong
- Key Laboratory of Adaptation and Evolution of Plateau Biota; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
- Laboratory of Plateau Fish Evolutionary and Functional Genomics; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
- University of Chinese Academy of Sciences; Beijing China
| | - Chenguang Feng
- Key Laboratory of Adaptation and Evolution of Plateau Biota; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
- Laboratory of Plateau Fish Evolutionary and Functional Genomics; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
- University of Chinese Academy of Sciences; Beijing China
| | - Cunfang Zhang
- Key Laboratory of Adaptation and Evolution of Plateau Biota; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
- Laboratory of Plateau Fish Evolutionary and Functional Genomics; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
| | - Kai Zhao
- Key Laboratory of Adaptation and Evolution of Plateau Biota; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
- Laboratory of Plateau Fish Evolutionary and Functional Genomics; Northwest Institute of Plateau Biology; Chinese Academy of Sciences; Xining Qinghai China
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Song G, Zhang R, DuBay SG, Qu Y, Dong L, Wang W, Zhang Y, Lambert DM, Lei F. East Asian allopatry and north Eurasian sympatry in Long-tailed Tit lineages despite similar population dynamics during the late Pleistocene. ZOOL SCR 2015. [DOI: 10.1111/zsc.12148] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Gang Song
- Key Laboratory of Zoological Systematics and Evolution; Institute of Zoology; Chinese Academy of Sciences; Beijing 100101 China
- Environmental Futures Research Institute; Griffith University; Nathan Qld 4111 Australia
| | - Ruiying Zhang
- Key Laboratory of Zoological Systematics and Evolution; Institute of Zoology; Chinese Academy of Sciences; Beijing 100101 China
- Center for Developmental Biology; Institute of Genetics and Developmental Biology; Chinese Academy of Sciences; Beijing 100101 China
| | - Shane G. DuBay
- Committee on Evolutionary Biology; University of Chicago; Chicago IL 60637 USA
- Life Sciences Section; Integrative Research Center; Field Museum of Natural History; Chicago IL 60605 USA
| | - Yanhua Qu
- Key Laboratory of Zoological Systematics and Evolution; Institute of Zoology; Chinese Academy of Sciences; Beijing 100101 China
| | - Lu Dong
- Ministry of Education Key Laboratory for Biodiversity and Ecological Engineering; College of Life Sciences; Beijing Normal University; Beijing 100875 China
| | - Wenjuan Wang
- Center for Watershed Ecology; Institute of Life Science; Nanchang University; Nanchang 330031 China
| | - Yanyun Zhang
- Ministry of Education Key Laboratory for Biodiversity and Ecological Engineering; College of Life Sciences; Beijing Normal University; Beijing 100875 China
| | - David M. Lambert
- Environmental Futures Research Institute; Griffith University; Nathan Qld 4111 Australia
| | - Fumin Lei
- Key Laboratory of Zoological Systematics and Evolution; Institute of Zoology; Chinese Academy of Sciences; Beijing 100101 China
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