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Falk S, Mulley JF. The genome sequence of the lesser worm flesh fly, Sarcophaga ( Sarcophaga) subvicina (Baranov, 1937). Wellcome Open Res 2023; 8:65. [PMID: 37600583 PMCID: PMC10435921 DOI: 10.12688/wellcomeopenres.18717.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/15/2022] [Indexed: 08/22/2023] Open
Abstract
We present a genome assembly from an individual male Sarcophaga subvicina (the lesser worm flesh fly; Arthropoda; Insecta; Diptera; Sarcophagidae). The genome sequence is 71 megabases in span. Most of the assembly (95.91%) is scaffolded into six chromosomal pseudomolecules, with the X sex chromosome assembled. The mitochondrial genome has also been assembled and is 16.7 kilobases in length. Gene annotation of this assembly on Ensembl identified 16,793 protein coding genes.
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Affiliation(s)
- Steven Falk
- independent Researcher, Kenilworth, Warwickshire, UK
| | | | | | | | | | | | - John F. Mulley
- School of Natural Sciences, Bangor University, Bangor, Wales, UK
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2
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Falk S, Mulley JF. The genome of Roselle's flesh fly Sarcophaga ( Helicophagella) rosellei (Böttcher, 1912). Wellcome Open Res 2023; 8:43. [PMID: 37766848 PMCID: PMC10521103 DOI: 10.12688/wellcomeopenres.18874.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/17/2023] [Indexed: 09/29/2023] Open
Abstract
We present a genome assembly from an individual male Sarcophaga rosellei (Roselle's flesh fly; Arthropoda; Insecta; Diptera; Sarcophagidae). The genome sequence is 541 megabases in span. Most of the assembly is scaffolded into six chromosomal pseudomolecules, with the X sex chromosome assembled. The mitochondrial genome has also been assembled and is 19.5 kilobases in length. Gene annotation of this assembly on Ensembl has identified 15,437 protein coding genes.
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Affiliation(s)
- Steven Falk
- Independent researcher, Kenilworth, Warwickshire, UK
| | | | | | | | | | | | - John F. Mulley
- School of Natural Sciences, Bangor University, Bangor, Wales, UK
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3
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Falk S, Mulley JF. The genome sequence of the bluish flesh fly, Sarcophaga ( Robineauella) caerulescens (Zetterstedt, 1838). Wellcome Open Res 2023; 8:17. [PMID: 37363063 PMCID: PMC10288162 DOI: 10.12688/wellcomeopenres.18718.1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/15/2022] [Indexed: 07/22/2023] Open
Abstract
We present a genome assembly from an individual male Sarcophaga caerulescens (the bluish flesh fly; Arthropoda; Insecta; Diptera; Sarcophagidae). The genome sequence is 597 megabases in span. Most of the assembly is scaffolded into seven chromosomal pseudomolecules, including the assembled X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 21.1 kilobases in length. Gene annotation of this assembly on Ensembl identified 16,559 protein coding genes.
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Affiliation(s)
- Steven Falk
- Independent researcher, Kenilworth, Warwickshire,, UK
| | | | | | | | | | | | - John F. Mulley
- School of Natural Sciences, Bangor University, Bangor, Wales, UK
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Szpila K, Johnston NP, Akbarzadeh K, Richet R, Tofilski A. Wing measurements are a possible tool for the identification of European forensically important Sarcophagidae. Forensic Sci Int 2022; 340:111451. [PMID: 36150278 DOI: 10.1016/j.forsciint.2022.111451] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Revised: 08/29/2022] [Accepted: 09/06/2022] [Indexed: 11/04/2022]
Abstract
The flesh flies are a group of insects well known for their forensic importance. Reliable identification of these flies relies on the use of either molecular markers or the morphology of the male genital apparatus. Identification of female flesh flies is more time consuming and less reliable than their male counterparts. This is particularly problematic for forensic entomology practitioners, because female flesh flies are more abundant than males in carrion arthropod assemblages. As such, it is critical that alternative methods for flesh fly identification are established that are equally effective for both sexes. One promising technique is the use of wing measurements, which have been shown to be reliable for the identification of some groups of necrophagous Diptera from several geographical regions. We applied this method to the European Sarcophagidae for the first time, using a dataset of 881 specimens representing 29 species and 5 genera. Species identifications were based on 15 landmarks located at wing vein junctions. We also combined our results with data from previous studies of Calliphoridae and Muscidae which utilised the same methodology, enabling the testing of family level identification using wing morphometrics. Species identifications using wing measurements had varied success. While some species were successfully identified without error, others, particularly from the genus Sarcophaga, were often misclassified. Notably, in several species wing measurements successfully identified both males and females. The results presented here suggest that wing measurements are a promising complementary method to other methods for the identification of necrophagous Sarcophagidae especially in material unsorted at the family level. It can also be used to double check identification performed by a taxonomist using traditional methods.
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Affiliation(s)
- Krzysztof Szpila
- Department of Ecology and Biogeography, Faculty of Biological and Veterinary Sciences, Nicolaus Copernicus University, Lwowska 1, 87-100 Toruń, Poland
| | - Nikolas P Johnston
- School of Life Sciences, University of Technology, 15 Broadway Ultimo, Sydney 2007, Australia
| | - Kamran Akbarzadeh
- Department of Medical Entomology and Vector Control, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran
| | - Rene Richet
- 16 Grande Rue, 03220, Jaligny-sur-Besbre, France
| | - Adam Tofilski
- Department of Zoology and Animal Welfare, University of Agriculture in Krakow, 31-425 Krakow, Poland
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Wang C, Sun H, Zhu W, Pape T, Liu Q, Zhang D. Taxonomic and nomenclatural notes on Chinese species of Sarcophaga Meigen, 1824 (Diptera, Sarcophagidae). Zookeys 2022; 1108:141-159. [PMID: 36760700 PMCID: PMC9848799 DOI: 10.3897/zookeys.1108.83267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Accepted: 05/21/2022] [Indexed: 11/12/2022] Open
Abstract
New taxonomic and nomenclatural data are provided for Chinese species of Sarcophaga Meigen, 1824. Eight new synonyms are proposed: two at the genus level, Magnicauda Wei, 2005 syn. nov. = Sarcophaga Meigen, 1824 and Leigongshanophaga Lehrer & Wei, 2010 syn. nov. = Sarcophaga Meigen, 1824, two at the subgenus level, Magnicauda Wei, 2005 syn. nov. = Pterosarcophaga Ye, 1981 and Leigongshanophaga Lehrer & Wei, 2010 syn. nov. = Cornexcisia Fan & Kano, 2000, and four at the species level, Sarcophagacatoptosa Wei & Yang, 2007 syn. nov. = Sarcophagasuthep Pape & Bänziger, 2003, Pierretiadaozhenensis Wei, 2005 syn. nov. = Sarcophagasichotealini (Rohdendorf, 1938), Pierretiaautochthona Wei & Yang, 2007 syn. nov. = Sarcophaga (Liosarcophaga) kanoi Park, 1962, and Parasarcophagasimultaneousa Wei & Yang, 2007 syn. nov. = Sarcophagahuangshanensis (Fan, 1964). Sarcophaga (Liosarcophaga) aegyptica Salem, 1935 is considered a senior synonym of Sarcophaga (Liosarcophaga) parkeri (Rohdendorf, 1937). Correct original spellings are established, by First Reviser action, for the genus-group names Magnicauda Wei, 2005 and Pterosarcophaga Ye, 1981 and for the species-group name Magnicaudalinjiangensis Wei, 2005. Chinese material of Sarcophaga (Bellieriomima) genuforceps, S. (Robineauella) huangshanensis (holotype and paratype), S. (Liosarcophaga) kanoi, and S. (L.) aegyptica is photographed for the first time.
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Affiliation(s)
- Chao Wang
- State Key Laboratory of Infectious Disease Prevention and Control, WHO Collaborating Centre for Vector Surveillance and Management, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, ChinaBeijing Forestry UniversityBeijingChina,School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, ChinaNational Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and PreventionBeijingChina
| | - Haoran Sun
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, ChinaNational Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and PreventionBeijingChina
| | - Weibing Zhu
- Center for Excellence in Molecular Plant Science, Chinese Academy of Sciences, Shanghai 200032, ChinaCenter for Excellence in Molecular Plant Science, Chinese Academy of SciencesShanghaiChina
| | - Thomas Pape
- Natural History Museum of Denmark, University of Copenhagen, Universitetsparken 15, DK-2100, Copenhagen, DenmarkUniversity of CopenhagenCopenhagenDenmark
| | - Qiyong Liu
- State Key Laboratory of Infectious Disease Prevention and Control, WHO Collaborating Centre for Vector Surveillance and Management, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, ChinaBeijing Forestry UniversityBeijingChina
| | - Dong Zhang
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, ChinaNational Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and PreventionBeijingChina
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Buenaventura E. Museomics and phylogenomics with protein-encoding ultraconserved elements illuminate the evolution of life history and phallic morphology of flesh flies (Diptera: Sarcophagidae). BMC Ecol Evol 2021; 21:70. [PMID: 33910519 PMCID: PMC8082969 DOI: 10.1186/s12862-021-01797-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 04/19/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The common name of the Flesh flies (Sarcophagidae) usually relates them with organisms feeding on decomposing organic matter, although the biology of one of the largest radiations among insects also includes predation, coprophagy, and even kleptoparasitism. The question of whether the ancestor of all sarcophagids was a predator or a decomposer, or in association to which host have sarcophagids evolved, has thus always piqued the curiosity of flesh fly specialists. Such curiosity has often been hindered by both the impossibility of having a well-supported phylogeny of Sarcophagidae and its sister group to trace live habits and the scarcity of information on the biology of the group. Using a phylogenomic dataset of protein-encoding ultraconserved elements from representatives of all three subfamilies of Sarcophagidae as ingroup and a large Calyptratae outgroup, a robust phylogenetic framework and timescale are generated to understand flesh fly systematics and the evolution of their life histories. RESULTS The evolutionary history for Sarcophagidae reconstructed here differs considerably from previous hypotheses. Within subfamily Sarcophaginae, a group of predatory flies, including genera Lepidodexia and Boettcheria, emerged as sister-group to the rest of Sarcophaginae. The genera Oxysarcodexia, Ravinia, and Tricharaea, long considered archaic and early-branching coprophagous and sarcosaprophagous lineages, were found nested well within the Sarcophaginae as sister-group to the sarcosaprophagous Microcerella. Predation on invertebrates is suggested as the ancestral and dominant strategy throughout the early evolution of flesh flies. Several transitions from predation to sarcosaprophagy and coprophagy occur across the sarcophagid phylogenetic tree, in contrast with almost no transitions from sarcosaprophagy or coprophagy to predatory habits. Regarding the morphological evolution of flesh flies, there might be a concerted evolution of male genitalia traits, such as the phallotrema position and the juxta, or the vesica and the folding of the phallotrema. One diversification rate shift was inferred in the evolution of sarcophagids, which is related to the origin of genus Sarcophaga. CONCLUSIONS This study has a significant impact on understanding sarcophagid evolution and highlights the importance of having a robust phylogenetic framework to reconstruct the ancestral character state of biological and morphological characters. I discuss the evolution of life histories of the family in relation to their hosts or substrates and outline how sarcosaprophagy, coprophagy, and kleptoparasitism behavior on various hosts may have evolved from predation on invertebrates. This study provides a phylogenetic framework for further physiological and comparative genomic work between predatory, sarcosaprophagous, coprophagous, and kleptoparasitic lineages, which could also have significant implications for the evolution of diverse life histories in other Diptera.
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Affiliation(s)
- Eliana Buenaventura
- Center for Integrative Biodiversity Discovery, Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstraße 43, 10115, Berlin, Germany.
- National Museum of Natural History, Smithsonian Institution, Washington, DC, 20013, USA.
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Moore HE, Hall MJR, Drijfhout FP, Cody RB, Whitmore D. Cuticular hydrocarbons for identifying Sarcophagidae (Diptera). Sci Rep 2021; 11:7732. [PMID: 33833323 PMCID: PMC8032779 DOI: 10.1038/s41598-021-87221-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Accepted: 03/15/2021] [Indexed: 11/28/2022] Open
Abstract
The composition and quantity of insect cuticular hydrocarbons (CHCs) can be species-specific as well as sexually dimorphic within species. CHC analysis has been previously used for identification and ageing purposes for several insect orders including true flies (Diptera). Here, we analysed the CHC chemical profiles of adult males and females of eleven species of flesh flies belonging to the genus Sarcophaga Meigen (Sarcophagidae), namely Sarcophaga africa (Wiedemann), S. agnata Rondani, S. argyrostoma Robineau-Desvoidy, S. carnaria (Linnaeus), S. crassipalpis Macquart, S. melanura Meigen, S. pumila Meigen, S. teretirostris Pandellé, S. subvicina Rohdendorf, S. vagans Meigen and S. variegata (Scopoli). Cuticular hydrocarbons extracted from pinned specimens from the collections of the Natural History Museum, London using a customised extraction technique were analysed using Gas Chromatography-Mass Spectrometry. Time of preservation prior to extraction ranged between a few weeks to over one hundred years. CHC profiles (1) allowed reliable identification of a large majority of specimens, (2) differed between males and females of the same species, (3) reliably associated males and females of the same species, provided sufficient replicates (up to 10) of each sex were analysed, and (4) identified specimens preserved for up to over one hundred years prior to extraction.
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Affiliation(s)
- Hannah E Moore
- Cranfield Forensic Institute, Cranfield University, Defence Academy of the United Kingdom, Shrivenham, Wiltshire, SN6 8LA, UK.
| | - Martin J R Hall
- Department of Life Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD, UK
| | - Falko P Drijfhout
- Chemical Ecology Group, School of Chemical and Physical Science, Keele University, Keele, ST5 5BG, England, UK
| | - Robert B Cody
- JEOL USA, Inc. 11 Dearborn Rd., Peabody, MA, 01969, USA
| | - Daniel Whitmore
- Staatliches Museum für Naturkunde Stuttgart, Rosenstein 1, 70191, Stuttgart, Germany
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Barbosa TM, Mello-Patiu CA, Vasconcelos SD. Revision of the New World subgenus Titanogrypa ( Cucullomyia) (Diptera: Sarcophagidae), with a reassessment of diagnostic characters. J NAT HIST 2021. [DOI: 10.1080/00222933.2021.1902587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Taciano M. Barbosa
- Laboratory of Insects of Forensic Importance, Departamento de Zoologia, Universidade Federal de Pernambuco, Recife, Brazil
| | - Cátia A. Mello-Patiu
- Laboratório de Diptera Neotropicais, Departamento de Entomologia, Museu Nacional/Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - Simão D. Vasconcelos
- Laboratory of Insects of Forensic Importance, Departamento de Zoologia, Universidade Federal de Pernambuco, Recife, Brazil
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Yan L, Xu W, Zhang D, Li J. Comparative analysis of the mitochondrial genomes of flesh flies and their evolutionary implication. Int J Biol Macromol 2021; 174:385-391. [PMID: 33529628 DOI: 10.1016/j.ijbiomac.2021.01.188] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Revised: 01/27/2021] [Accepted: 01/28/2021] [Indexed: 02/07/2023]
Abstract
Flesh flies (Diptera: Sarcophagidae) include a large and widely distributed rapid radiation within the Calyptratae. They are vital for the ecosystem, as well as economic, forensic, and evolutionary studies, because of their extremely diverse habits as larvae. Phylogenetic studies of Sarcophagidae have been reaching convergence, which leads the opportunity to elucidate the evolution of these fast-evolving insects from the perspective of mitochondrial genome. Complete mitochondrial genomes of eight species were sequenced, and comparative mitochondrial genomic analysis between subfamilies were conducted. Mitochondrial genomes of these flesh flies are conserved in gene content with gene arrangement, same as the inferred ancestral insect, and the nucleotide composition is highly biased towards A + T like other flesh flies. The evolutionary rates of Sarcophagidae vary considerably across subfamilies, with that of Miltogramminae higher than the other two subfamilies. Phylogenetic analysis strongly supports monophyly of Sarcophagidae and each subfamily, with subfamily-level relationship inferred as (Sarcophaginae, (Miltogramminae, Paramacronychiinae)). The main topological inconsistency of all reconstructions is the relationship within Miltogramminae and Sarcophaga, which might be caused by their rapid evolution. Our study indicates that the mitochondrial genomes of flesh flies are highly conserved, and they are practically useful for phylogenetic inference of calyptrates.
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Affiliation(s)
- Liping Yan
- School of Ecology and Nature Conservation, Beijing Forestry University, Qinghua East Road 35, Beijing 10083, China
| | - Wentian Xu
- School of Ecology and Nature Conservation, Beijing Forestry University, Qinghua East Road 35, Beijing 10083, China
| | - Dong Zhang
- School of Ecology and Nature Conservation, Beijing Forestry University, Qinghua East Road 35, Beijing 10083, China.
| | - Junqing Li
- School of Ecology and Nature Conservation, Beijing Forestry University, Qinghua East Road 35, Beijing 10083, China.
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10
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Ren L, Zhang X, Li Y, Shang Y, Chen S, Wang S, Qu Y, Cai J, Guo Y. Comparative analysis of mitochondrial genomes among the subfamily Sarcophaginae (Diptera: Sarcophagidae) and phylogenetic implications. Int J Biol Macromol 2020; 161:214-222. [PMID: 32526299 DOI: 10.1016/j.ijbiomac.2020.06.043] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Revised: 05/25/2020] [Accepted: 06/05/2020] [Indexed: 12/16/2022]
Abstract
The subfamily Sarcophaginae is extremely diverse in morphology, habit and geographical distribution, and usually considered to be of significant ecological, medical, and forensic significance. In the present study, 18 mitochondrial genomes (mitogenomes) of sarcophagid flies were first obtained. The rearrangement and orientation of genes were identical with that of ancestral insects. The degrees of compositional heterogeneity in the datasets were extremely low. Furthermore, 13 protein-coding genes were evolving under purifying selection. The phylogenic relationship of the genus-group taxa Boettcheria + (Sarcophaga + (Peckia + (Ravinia + Oxysarcodexia))) was strongly supported. Four subgenera were recovered as monophyletic (Liopygia, Liosarcophaga, Pierretia, Heteronychia) in addition to Parasarcophaga as polyphyletic. The sister-relationships between S. dux and S. aegyptiaca, S. pingi and S. kawayuensis were recovered, respectively. Moreover, the molecular phylogenetic relationships among the subgenera Helicophagella, Kozlovea, Kramerea, Pandelleisca, Phallocheira, Pseudothyrsocnema, Sinonipponia and Seniorwhitea were rarely put forward prior to this study. This study provides insight into the population genetics, molecular biology, and phylogeny for the subfamily Sarcophaginae, especially for the subgeneric classification of Sarcophaga. However, compared with the enormous species diversity of flesh flies, the available mitogenomes are still limited for recovering the phylogeny of Sarcophaginae.
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Affiliation(s)
- Lipin Ren
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Xiangyan Zhang
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Yi Li
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Yanjie Shang
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Shan Chen
- School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Shiwen Wang
- Department of Forensic Science, School of Basic Medical Sciences, Xinjiang Medical University, Ürümqi, Xinjiang, China
| | - Yihong Qu
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Jifeng Cai
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China
| | - Yadong Guo
- Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha, Hunan, China.
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Brousseau PM, Giroux M, Handa IT. First record on the biology of Sarcophaga (Bulbostyla) (Diptera, Sarcophagidae). Zookeys 2020; 909:59-66. [PMID: 32089634 PMCID: PMC7015951 DOI: 10.3897/zookeys.909.46488] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Accepted: 11/18/2019] [Indexed: 11/18/2022] Open
Abstract
A first breeding record for Sarcophaga (Bulbostyla) cadyi Giroux & Wheeler on the American giant millipede Narceus americanus (de Beauvois) (Spirobolida, Spirobolidae) is reported. Digital photographs of the terminalia of S. (B.) cadyi and of Sarcophaga (Bulbostyla) yorkii Parker are also provided.
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Affiliation(s)
- Pierre-Marc Brousseau
- Département des sciences biologiques, Université du Québec à Montréal, 141, avenue du Président-Kennedy, Montréal, QC, H2X 1Y4, CanadaUniversité du Québec à MontréalMontréalCanada
| | - Marjolaine Giroux
- Montréal Insectarium / Space for life, 4581, rue Sherbrooke Est, Montréal, QC, H1X 2B2, CanadaMontréal Insectarium / Space for lifeMontréalCanada
| | - I. Tanya Handa
- Département des sciences biologiques, Université du Québec à Montréal, 141, avenue du Président-Kennedy, Montréal, QC, H2X 1Y4, CanadaUniversité du Québec à MontréalMontréalCanada
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12
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Brousseau PM, Giroux M, Handa IT. First record on the biology of Sarcophaga (Bulbostyla) (Diptera, Sarcophagidae). Zookeys 2020. [DOI: 10.3897/zookeys.902.46488] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
A first breeding record for Sarcophaga (Bulbostyla) cadyi Giroux & Wheeler on the American giant millipede Narceus americanus (de Beauvois) (Spirobolida, Spirobolidae) is reported. Digital photographs of the terminalia of S. (B.) cadyi and of Sarcophaga (Bulbostyla) yorkii Parker are also provided.
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13
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Narayanan Kutty S, Meusemann K, Bayless KM, Marinho MAT, Pont AC, Zhou X, Misof B, Wiegmann BM, Yeates D, Cerretti P, Meier R, Pape T. Phylogenomic analysis of Calyptratae: resolving the phylogenetic relationships within a major radiation of Diptera. Cladistics 2019; 35:605-622. [DOI: 10.1111/cla.12375] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/03/2019] [Indexed: 12/21/2022] Open
Affiliation(s)
- Sujatha Narayanan Kutty
- Department of Biological Sciences National University of Singapore 14 Science Dr 4 Singapore 117543 Singapore
| | - Karen Meusemann
- Biology I, Evolutionary Biology & Ecology University of Freiburg Hauptstraße 1 Freiburg (Brsg.) Germany
- Zoologisches Forschungsmuseum Alexander Koenig (ZFMK)/Zentrum für Molekulare Biodiversitätsforschung (ZMB) Bonn Germany
- Australian National Insect Collection CSIRO National Research Collections Australia (NRCA) Acton, ACT Canberra Australia
| | - Keith M. Bayless
- Department of Entomology California Academy of Sciences San Francisco CA USA
- Department of Entomology North Carolina State University Raleigh NC 27695 USA
| | - Marco A. T. Marinho
- Departamento de Ecologia, Zoologia e Genética Instituto de Biologia Universidade Federal de Pelotas Pelotas RS Brazil
| | - Adrian C. Pont
- Oxford University Museum of Natural History Parks Road Oxford OX1 3PW UK
| | - Xin Zhou
- Beijing Advanced Innovation Center for Food Nutrition and Human Health China Agricultural University Beijing 100193 China
- Department of Entomology China Agricultural University Beijing 100193 China
| | - Bernhard Misof
- Zoologisches Forschungsmuseum Alexander Koenig (ZFMK)/Zentrum für Molekulare Biodiversitätsforschung (ZMB) Bonn Germany
| | - Brian M. Wiegmann
- Department of Entomology North Carolina State University Raleigh NC 27695 USA
| | - David Yeates
- Australian National Insect Collection CSIRO National Research Collections Australia (NRCA) Acton, ACT Canberra Australia
| | - Pierfilippo Cerretti
- Dipartimento di Biologia e Biotecnologie ‘Charles Darwin’ Sapienza Università di Roma Rome Italy
| | - Rudolf Meier
- Department of Biological Sciences National University of Singapore 14 Science Dr 4 Singapore 117543 Singapore
| | - Thomas Pape
- Natural History Museum of Denmark University of Copenhagen Universitetsparken 15 Copenhagen DK–2100 Denmark
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14
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Huang J, Ma T. Comparative analysis of two mitochondrial genomes of flesh flies (Sarcophaga antilope and Sarcophaga dux) with phylogeny and evolutionary timescale for Sarcophagidae. Int J Biol Macromol 2018; 120:1955-1964. [DOI: 10.1016/j.ijbiomac.2018.10.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 09/29/2018] [Accepted: 10/01/2018] [Indexed: 11/28/2022]
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15
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DNA barcoding for identifying synanthropic flesh flies (Diptera, Sarcophagidae) of Colombia. Acta Trop 2018; 182:291-297. [PMID: 29408406 DOI: 10.1016/j.actatropica.2018.01.020] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Revised: 11/02/2017] [Accepted: 01/26/2018] [Indexed: 11/23/2022]
Abstract
The first step for a successful use of any insect as indicator in forensic sciences is providing a precise taxonomic identification at species level. Due to morphology-based identification of Sarcophaginae flies (Diptera, Sarcophagidae) is often difficult and requires strong taxonomic expertise, their use as forensic indicators has been limited. Consequently, molecular-based approaches have been accepted as alternative means of identification. Thus, we aimed testing the efficiency of the barcode region of the mitochondrial cytochrome oxidase subunit I (COI) gene for identification of synanthropic flesh flies of several species of the genera Peckia, Oxysarcodexia, Ravinia, and Tricharaea collected in Colombia. The 645-bp fragment of COI was amplified and aligned (215 parsimoniously informative variable sites). We calculated Kimura two-parameter genetic distances and reconstruct a Neighbor-Joining phylogenetic tree. Our Neighbor-Joining tree recovered all species as monophyletic, and confirmed a new species of the genus Ravinia as also indicated by the interspecific genetic divergences and morphological observations. We obtained a 100% of identification success. Thus, the COI barcodes showed efficiency as an alternative mean of identification of species of flesh flies collected on decaying organic matter in Colombia.
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Buenaventura E, Pape T. Phylogeny, evolution and male terminalia functionality of Sarcophaginae (Diptera: Sarcophagidae). Zool J Linn Soc 2017. [DOI: 10.1093/zoolinnean/zlx070] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Affiliation(s)
- Eliana Buenaventura
- Natural History Museum of Denmark, Universitetsparken, Copenhagen, Denmark
- National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | - Thomas Pape
- Natural History Museum of Denmark, Universitetsparken, Copenhagen, Denmark
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17
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Affiliation(s)
- Andrew V. Z. Brower
- Evolution and Ecology Group; Department of Biology; Middle Tennessee State University; Murfreesboro TN 37037 USA
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18
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Harbach RE, Culverwell CL, Kitching IJ. Phylogeny of the nominotypical subgenus of Culex (Diptera: Culicidae): insights from analyses of anatomical data into interspecific relationships and species groups in an unresolved tree. SYST BIODIVERS 2016. [DOI: 10.1080/14772000.2016.1252439] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Ralph E. Harbach
- Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK
| | - C. Lorna Culverwell
- Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK
| | - Ian J. Kitching
- Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK
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