1
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Falk S, Broad GR. The genome sequence of Tenthredo notha Klug, 1814, a sawfly. Wellcome Open Res 2024; 7:120. [PMID: 38586560 PMCID: PMC10997988 DOI: 10.12688/wellcomeopenres.17811.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/26/2024] [Indexed: 04/09/2024] Open
Abstract
We present a genome assembly from an individual female Tenthredo notha (Arthropoda; Insecta; Hymenoptera; Tenthredinidae). The genome sequence is 253 megabases in span. Most of the assembly (99.91%) is scaffolded into 20 chromosomal pseudomolecules. The mitochondrial genome was also assembled and is 19.8 kilobases in length. Gene annotation of this assembly on Ensembl has identified 10,235 protein coding genes.
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Affiliation(s)
- Steven Falk
- Independent Researcher, Kenilworth, Warwickshire, UK
| | | | | | | | | | | | - Gavin R. Broad
- Department of Life Sciences, Natural History Museum, London, UK
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2
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Falk S, Monks J. The genome sequence of the common green furrow bee, Lasioglossum morio (Fabricius, 1793). Wellcome Open Res 2024; 8:28. [PMID: 38699201 PMCID: PMC11063680 DOI: 10.12688/wellcomeopenres.18715.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/21/2024] [Indexed: 05/05/2024] Open
Abstract
We present a genome assembly from an individual male Lasioglossum morio (the common green furrow bee; Arthropoda; Insecta; Hymenoptera; Halictidae). The genome sequence is 547 megabases in span. Over half of the assembly (55.79%) is scaffolded into 12 chromosomal pseudomolecules. The mitochondrial genome was also assembled, and is 16.8 kilobases in length. Gene annotation of this assembly on Ensembl identified 11,460 protein coding genes.
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Affiliation(s)
- Steven Falk
- Independent Researcher, Kenilworth, Warwickshire, UK
| | | | | | | | | | | | - Joseph Monks
- Department of Life Sciences- Hymenoptera section, Natural History Museum, London, UK
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3
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Adkins P, Mrowicki R, Harley J, Mieszkowska N, Ferreira JGRN. The genome sequence of the grey top shell, Steromphala cineraria (Linnaeus, 1758). Wellcome Open Res 2024; 7:44. [PMID: 38715953 PMCID: PMC11074690 DOI: 10.12688/wellcomeopenres.17677.3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/18/2024] [Indexed: 05/12/2024] Open
Abstract
We present a genome assembly from an individual Steromphala cineraria (the grey topshell; Mollusca; Gastropoda; Trochida; Trochidae). The genome sequence is 1,270 megabases in span. Most of the assembly (99.23%) is scaffolded into 18 chromosomal pseudomolecules.
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Affiliation(s)
| | - Robert Mrowicki
- Marine Biological Association, Plymouth, Devon, UK
- Natural History Museum, London, UK
| | | | | | - João G. R. N. Ferreira
- Bio Bureau Biotechnology, Rio de Janeiro, Brazil
- Tree of Life, Wellcome Sanger Institute, Cambridge, UK
| | - Marine Biological Association Genome Acquisition Lab
- Marine Biological Association, Plymouth, Devon, UK
- Natural History Museum, London, UK
- Bio Bureau Biotechnology, Rio de Janeiro, Brazil
- Tree of Life, Wellcome Sanger Institute, Cambridge, UK
| | - Darwin Tree of Life Barcoding collective
- Marine Biological Association, Plymouth, Devon, UK
- Natural History Museum, London, UK
- Bio Bureau Biotechnology, Rio de Janeiro, Brazil
- Tree of Life, Wellcome Sanger Institute, Cambridge, UK
| | - Wellcome Sanger Institute Tree of Life programme
- Marine Biological Association, Plymouth, Devon, UK
- Natural History Museum, London, UK
- Bio Bureau Biotechnology, Rio de Janeiro, Brazil
- Tree of Life, Wellcome Sanger Institute, Cambridge, UK
| | - Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective
- Marine Biological Association, Plymouth, Devon, UK
- Natural History Museum, London, UK
- Bio Bureau Biotechnology, Rio de Janeiro, Brazil
- Tree of Life, Wellcome Sanger Institute, Cambridge, UK
| | - Tree of Life Core Informatics collective
- Marine Biological Association, Plymouth, Devon, UK
- Natural History Museum, London, UK
- Bio Bureau Biotechnology, Rio de Janeiro, Brazil
- Tree of Life, Wellcome Sanger Institute, Cambridge, UK
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4
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Crowley LM. The genome sequence of the devil's coach horse beetle, Ocypus olens (Müller, 1764). Wellcome Open Res 2024; 6:293. [PMID: 35572471 PMCID: PMC9069170 DOI: 10.12688/wellcomeopenres.17342.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/18/2024] [Indexed: 03/26/2024] Open
Abstract
We present a genome assembly from an individual female Ocypus olens (the devil's coach horse; Arthropoda; Insecta; Coleoptera; Staphylinidae). The genome sequence is 1,084 megabases in span. The majority (98.81%) of the assembly is scaffolded into 20 chromosomal pseudomolecules, with the X sex chromosome assembled.
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5
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Boyes D, Gibbs M. The genome sequence of the Brown Oak Tortrix, Archips crataeganus (Hübner, 1796). Wellcome Open Res 2024; 9:9. [PMID: 38560613 PMCID: PMC10980857 DOI: 10.12688/wellcomeopenres.20413.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/16/2023] [Indexed: 04/04/2024] Open
Abstract
We present a genome assembly from an individual female Archips crataeganus (the Brown Oak Tortrix; Arthropoda; Insecta; Lepidoptera; Tortricidae). The genome sequence is 626.9 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z and W sex chromosomes. The mitochondrial genome has also been assembled and is 16.64 kilobases in length. Gene annotation of this assembly on Ensembl identified 19,596 protein coding genes.
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Affiliation(s)
- Douglas Boyes
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
| | - Melanie Gibbs
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
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6
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Boyes D, Blaxter ML. The genome sequence of the Tipped Oak Case-bearer, Coleophora flavipennella (Duponchel 1843). Wellcome Open Res 2024; 9:3. [PMID: 38686023 PMCID: PMC11056683 DOI: 10.12688/wellcomeopenres.19917.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/17/2023] [Indexed: 05/02/2024] Open
Abstract
We present a genome assembly from an individual female Coleophora flavipennella (the Tipped Oak Case-bearer; Arthropoda; Insecta; Lepidoptera; Coleophoridae). The genome sequence is 989.3 megabases in span. Most of the assembly is scaffolded into 57 chromosomal pseudomolecules, including the W and Z sex chromosomes. The mitochondrial genome has also been assembled and is 15.77 kilobases in length.
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Affiliation(s)
- Douglas Boyes
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
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7
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Adkins P, Mrowicki R. The genome sequence of the European flat oyster, Ostrea edulis (Linnaeus, 1758). Wellcome Open Res 2023; 8:556. [PMID: 38558925 PMCID: PMC10979132 DOI: 10.12688/wellcomeopenres.19916.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/16/2023] [Indexed: 04/04/2024] Open
Abstract
We present a genome assembly from an individual Ostrea edulis (the European flat oyster; Mollusca; Bivalvia; Ostreida; Ostreidae). The genome sequence is 894.8 megabases in span. Most of the assembly is scaffolded into 10 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.35 kilobases in length.
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Affiliation(s)
- Patrick Adkins
- The Marine Biological Association, Plymouth, England, UK
| | - Rob Mrowicki
- The Marine Biological Association, Plymouth, England, UK
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8
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Adkins P, Mrowicki R. The genome sequence of the Gelatinous Scale Worm, Alentia gelatinosa (Sars, 1835). Wellcome Open Res 2023; 8:542. [PMID: 38558923 PMCID: PMC10980856 DOI: 10.12688/wellcomeopenres.20176.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/12/2023] [Indexed: 04/04/2024] Open
Abstract
We present a genome assembly from an individual Alentia gelatinosa (Gelatinous Scale Worm); Annelida; Polychaeta; Phyllodocida; Polynoidae). The genome sequence is 1,237.5 megabases in span. Most of the assembly is scaffolded into 15 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 15.37 kilobases in length.
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Affiliation(s)
- Patrick Adkins
- The Marine Biological Association, Plymouth, England, UK
| | - Rob Mrowicki
- The Marine Biological Association, Plymouth, England, UK
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9
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Crowley LM, Broad GR. The genome sequence of an ichneumonid wasp, Heteropelma amictum (Fabricius, 1775). Wellcome Open Res 2023; 8:537. [PMID: 38434733 PMCID: PMC10905020 DOI: 10.12688/wellcomeopenres.20364.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2023] [Indexed: 03/05/2024] Open
Abstract
We present a genome assembly from an individual female Heteropelma amictum (an ichneumonid wasp; Arthropoda; Insecta; Hymenoptera; Ichneumonidae). The genome sequence is 226.4 megabases in span. Most of the assembly is scaffolded into 10 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 20.65 kilobases in length.
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10
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Crowley LM, Falk S, Williams CD. The genome sequence of the common buff snailkiller, Tetanocera ferruginea (Fallén, 1820). Wellcome Open Res 2023; 8:535. [PMID: 38434740 PMCID: PMC10904942 DOI: 10.12688/wellcomeopenres.20366.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2023] [Indexed: 03/05/2024] Open
Abstract
We present a genome assembly from an individual male Tetanocera ferruginea (the common buff snailkiller; Arthropoda; Insecta; Diptera; Sciomyzidae). The genome sequence is 790.4 megabases in span. Most of the assembly is scaffolded into 7 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 17.07 kilobases in length.
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Affiliation(s)
- Liam M. Crowley
- Department of Biology, University of Oxford, Oxford, England, UK
| | - Steven Falk
- Independent researcher, Kenilworth, England, UK
| | - Christopher D. Williams
- Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, England, UK
| | - University of Oxford and Wytham Woods Genome Acquisition Lab
- Department of Biology, University of Oxford, Oxford, England, UK
- Independent researcher, Kenilworth, England, UK
- Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, England, UK
| | - Darwin Tree of Life Barcoding collective
- Department of Biology, University of Oxford, Oxford, England, UK
- Independent researcher, Kenilworth, England, UK
- Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, England, UK
| | - Wellcome Sanger Institute Tree of Life programme
- Department of Biology, University of Oxford, Oxford, England, UK
- Independent researcher, Kenilworth, England, UK
- Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, England, UK
| | - Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective
- Department of Biology, University of Oxford, Oxford, England, UK
- Independent researcher, Kenilworth, England, UK
- Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, England, UK
| | - Tree of Life Core Informatics collective
- Department of Biology, University of Oxford, Oxford, England, UK
- Independent researcher, Kenilworth, England, UK
- Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, England, UK
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11
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Lees DC. The genome sequence of the Chestnut, Conistra vaccinii (Linnaeus, 1761). Wellcome Open Res 2023; 8:532. [PMID: 38634068 PMCID: PMC11021882 DOI: 10.12688/wellcomeopenres.20346.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2023] [Indexed: 04/19/2024] Open
Abstract
We present a genome assembly from an individual male Conistra vaccinii (the Chestnut; Arthropoda; None; Lepidoptera; Noctuidae). The genome sequence is 720.8 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.44 kilobases in length. Gene annotation of this assembly on Ensembl identified 13,109 protein coding genes.
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12
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Crowley LM, Hutchinson F. The genome sequence of the Wasp Spider, Argiope bruennichi (Scopoli, 1772). Wellcome Open Res 2023; 8:522. [PMID: 38434739 PMCID: PMC10904950 DOI: 10.12688/wellcomeopenres.20339.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/02/2023] [Indexed: 03/05/2024] Open
Abstract
We present a genome assembly from an individual female Argiope bruennichi (the Wasp Spider; Arthropoda; Arachnida; Araneae; Araneidae). The genome sequence is 1,778.4 megabases in span. Most of the assembly is scaffolded into 13 chromosomal pseudomolecules, including the X 1 and X 2 sex chromosomes. The mitochondrial genome has also been assembled and is 14.06 kilobases in length.
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13
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Boyes D, Eagles M. The genome sequence of the Flame Shoulder, Ochropleura plecta (Linnaeus, 1761). Wellcome Open Res 2023; 8:506. [PMID: 38404636 PMCID: PMC10884592 DOI: 10.12688/wellcomeopenres.20187.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/12/2023] [Indexed: 02/27/2024] Open
Abstract
We present a genome assembly from an individual female Ochropleura plecta (the Flame Shoulder; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 643.9 megabases in span. Most of the assembly is scaffolded into 32 chromosomal pseudomolecules, including the W and Z sex chromosomes. The mitochondrial genome has also been assembled and is 15.34 kilobases in length. Gene annotation of this assembly on Ensembl identified 19,016 protein coding genes.
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Affiliation(s)
- Douglas Boyes
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
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14
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Sivell O, Levey B, Barclay MVL. The genome sequence of a darkling beetle, Lagria hirta (Linnaeus, 1758). Wellcome Open Res 2023; 8:501. [PMID: 38434741 PMCID: PMC10905005 DOI: 10.12688/wellcomeopenres.20232.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/13/2023] [Indexed: 03/05/2024] Open
Abstract
We present a genome assembly from an individual male Lagria hirta (darkling beetle; Arthropoda; Insecta; Coleoptera; Tenebrionidae). The genome sequence is 336.8 megabases in span. Most of the assembly is scaffolded into 12 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 16.12 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,850protein coding genes.
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Affiliation(s)
| | - Brian Levey
- Natural History Museum, London, England, UK
- National Museum of Wales, Cardiff, Wales, UK
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15
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Blaxter ML, Spurgeon D, Kille P. The genome sequence of the common earthworm, Lumbricus terrestris (Linnaeus, 1758). Wellcome Open Res 2023; 8:500. [PMID: 38249959 PMCID: PMC10799228 DOI: 10.12688/wellcomeopenres.20178.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/12/2023] [Indexed: 01/23/2024] Open
Abstract
We present a genome assembly from an individual Lumbricus terrestris (the common earthworm; Annelida; Clitellata; Haplotaxida; Lumbricidae). The genome sequence is 1,056.5 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 15.93 kilobases in length.
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Affiliation(s)
- Mark L. Blaxter
- Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK
| | - David Spurgeon
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
| | - Peter Kille
- Cardiff School of Biosciences, Cardiff University, Cardiff, Wales, UK
| | - Wellcome Sanger Institute Tree of Life programme
- Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
- Cardiff School of Biosciences, Cardiff University, Cardiff, Wales, UK
| | - Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective
- Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
- Cardiff School of Biosciences, Cardiff University, Cardiff, Wales, UK
| | - Tree of Life Core Informatics collective
- Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
- Cardiff School of Biosciences, Cardiff University, Cardiff, Wales, UK
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16
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Boyes D, Turnbull L. The genome sequence of the Hornet Moth, Sesia apiformis (Clerck, 1759). Wellcome Open Res 2023; 8:499. [PMID: 38385125 PMCID: PMC10879760 DOI: 10.12688/wellcomeopenres.20236.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/13/2023] [Indexed: 02/23/2024] Open
Abstract
We present a genome assembly from an individual male Sesia apiformis (the Hornet Moth; Arthropoda; Insecta; Lepidoptera; Sesiidae). The genome sequence is 546.8 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.4 kilobases in length. Gene annotation of this assembly on Ensembl identified 16,358 protein coding genes.
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Affiliation(s)
- Douglas Boyes
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
| | - Lindsay Turnbull
- Department of Biology, University of Oxford, Oxford, England, UK
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17
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Crowley LM. The genome sequence of the Saxon Wasp, Dolichovespula saxonica (Fabricius, 1793). Wellcome Open Res 2023; 8:498. [PMID: 38371738 PMCID: PMC10873546 DOI: 10.12688/wellcomeopenres.20180.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/12/2023] [Indexed: 02/20/2024] Open
Abstract
We present a genome assembly from an individual male Dolichovespula saxonica (the Saxon Wasp; Arthropoda; Insecta; Hymenoptera; Vespidae). The genome sequence is 221.8 megabases in span. Most of the assembly is scaffolded into 26 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 18.97 kilobases in length. Gene annotation of this assembly on Ensembl identified 10,856 protein coding genes.
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Affiliation(s)
- Liam M. Crowley
- Department of Biology, University of Oxford, Oxford, England, UK
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18
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Crowley LM. The genome sequence of Fabricius' Nomad Bee, Nomada fabriciana (Linne, 1767). Wellcome Open Res 2023; 8:497. [PMID: 38558924 PMCID: PMC10980859 DOI: 10.12688/wellcomeopenres.20184.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/12/2023] [Indexed: 04/04/2024] Open
Abstract
We present a genome assembly from an individual female Nomada fabriciana (Fabricius' Nomad Bee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 233.6 megabases in span. Most of the assembly is scaffolded into 12 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 19.4 kilobases in length. Gene annotation of this assembly on Ensembl identified 9,700 protein coding genes.
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Affiliation(s)
- Liam M. Crowley
- Department of Biology, University of Oxford, Oxford, England, UK
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19
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Macgregor CJ, Saccheri IJ. The genome sequence of the Rock Grayling, Hipparchia semele (Linnaeus, 1758). Wellcome Open Res 2023; 8:495. [PMID: 38292065 PMCID: PMC10825418 DOI: 10.12688/wellcomeopenres.20183.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/12/2023] [Indexed: 02/01/2024] Open
Abstract
We present a genome assembly from an individual female Hipparchia semele (the Rock Grayling; Arthropoda; Insecta; Lepidoptera; Nymphalidae). The genome sequence is 403.4 megabases in span. Most of the assembly is scaffolded into 30 chromosomal pseudomolecules, including the W and Z sex chromosomes. The mitochondrial genome has also been assembled and is 15.22 kilobases in length. Gene annotation of this assembly on Ensembl identified 17,540 protein coding genes.
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Affiliation(s)
- Callum J. Macgregor
- Leverhulme Centre for Anthropocene Biodiversity, University of York, York, England, UK
- British Trust for Ornithology, Bangor, Wales, UK
| | - Ilik J. Saccheri
- Department of Evolution, Ecology and Behaviour, University of Liverpool, Liverpool, England, UK
| | - Wellcome Sanger Institute Tree of Life programme
- Leverhulme Centre for Anthropocene Biodiversity, University of York, York, England, UK
- British Trust for Ornithology, Bangor, Wales, UK
- Department of Evolution, Ecology and Behaviour, University of Liverpool, Liverpool, England, UK
| | - Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective
- Leverhulme Centre for Anthropocene Biodiversity, University of York, York, England, UK
- British Trust for Ornithology, Bangor, Wales, UK
- Department of Evolution, Ecology and Behaviour, University of Liverpool, Liverpool, England, UK
| | - Tree of Life Core Informatics collective
- Leverhulme Centre for Anthropocene Biodiversity, University of York, York, England, UK
- British Trust for Ornithology, Bangor, Wales, UK
- Department of Evolution, Ecology and Behaviour, University of Liverpool, Liverpool, England, UK
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20
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Farr A, Macadam CR. The genome sequence of the Northern Summer Mayfly, Siphlonurus alternatus (Say, 1824). Wellcome Open Res 2023; 8:488. [PMID: 38707491 PMCID: PMC11069044 DOI: 10.12688/wellcomeopenres.20172.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/12/2023] [Indexed: 05/07/2024] Open
Abstract
We present a genome assembly from an individual male Siphlonurus alternatus (the Northern Summer Mayfly; Arthropoda; Insecta; Ephemeroptera; Siphlonuridae). The genome sequence is 455.8 megabases in span. Most of the assembly is scaffolded into 11 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 19.36 kilobases in length.
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Affiliation(s)
- Andrew Farr
- Independent researcher, Hailsham, England, UK
| | - Craig R. Macadam
- Buglife – The Invertebrate Conservation Trust, Stirling, Scotland, UK
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21
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Boyes D, Hammond J. The genome sequence of the Ruddy Flat-body, Agonopterix subpropinquella (Stainton, 1849). Wellcome Open Res 2023; 8:487. [PMID: 38716048 PMCID: PMC11074695 DOI: 10.12688/wellcomeopenres.20170.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/12/2023] [Indexed: 05/12/2024] Open
Abstract
We present a genome assembly from an individual male Agonopterix subpropinquella (the Ruddy Flat-body; Arthropoda; Insecta; Lepidoptera; Depressariidae). The genome sequence is 667.9 megabases in span. Most of the assembly is scaffolded into 28 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 16.5 kilobases in length. Gene annotation of this assembly on Ensembl identified 18,796 protein coding genes.
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Affiliation(s)
- Douglas Boyes
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
| | - James Hammond
- Department of Biology, University of Oxford, Oxford, England, UK
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22
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Boyes D, Phillips D. The genome sequence of the Early Thorn, Selenia dentaria (Fabricius, 1775). Wellcome Open Res 2023; 8:485. [PMID: 38707490 PMCID: PMC11066531 DOI: 10.12688/wellcomeopenres.20140.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/06/2023] [Indexed: 05/07/2024] Open
Abstract
We present a genome assembly from an individual male Selenia dentaria (the Early Thorn; Arthropoda; Insecta; Lepidoptera; Geometridae). The genome sequence is 1,030.8 megabases in span. Most of the assembly is scaffolded into 30 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.41 kilobases in length. Gene annotation of this assembly on Ensembl identified 21,390 protein coding genes.
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Affiliation(s)
- Douglas Boyes
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
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23
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Farr A, Macadam C. The genome sequence of the Large Brook Dun, Ecdyonurus torrentis (Kimmins, 1942). Wellcome Open Res 2023; 8:468. [PMID: 37997584 PMCID: PMC10665603 DOI: 10.12688/wellcomeopenres.20149.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/09/2023] [Indexed: 11/25/2023] Open
Abstract
We present a genome assembly from an individual female Ecdyonurus torrentis (the Large Brook Dun; Arthropoda; Insecta; Ephemeroptera; Heptageniidae). The genome sequence is 503.2 megabases in span. Most of the assembly is scaffolded into 11 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 15.69 kilobases in length.
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Affiliation(s)
- Andrew Farr
- Independent researcher, Hailsham, England, UK
| | - Craig Macadam
- Buglife – The Invertebrate Conservation Trust, Stirling, Scotland, UK
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24
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Falk S, Sudworth J. The genome sequence of a hoverfly, Sphaerophoria taeniata (Meigen, 1822). Wellcome Open Res 2023; 8:474. [PMID: 38434738 PMCID: PMC10905010 DOI: 10.12688/wellcomeopenres.19921.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/17/2023] [Indexed: 03/05/2024] Open
Abstract
We present a genome assembly from an individual male Sphaerophoria taeniata (a hoverfly; Arthropoda; Insecta; Diptera; Syrphidae). The genome sequence is 609.3 megabases in span. Most of the assembly is scaffolded into 5 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 16.42 kilobases in length. Gene annotation of this assembly on Ensembl identified 24,213 protein coding genes.
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Affiliation(s)
- Steven Falk
- Independent researcher, Kenilworth, England, UK
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25
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Crowley LM. The genome sequence of a digger wasp, Ectemnius continuus (Fabricius, 1804). Wellcome Open Res 2023; 8:469. [PMID: 38533438 PMCID: PMC10964002 DOI: 10.12688/wellcomeopenres.20138.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/06/2023] [Indexed: 03/28/2024] Open
Abstract
We present a genome assembly from an individual female Ectemnius continuus (digger wasp; Arthropoda; Insecta; Hymenoptera; Crabronidae). The genome sequence is 260.3 megabases in span. Most of the assembly is scaffolded into 14 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 27.05 kilobases in length. Gene annotation of this assembly on Ensembl identified 9,835 protein coding genes.
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Affiliation(s)
- Liam M. Crowley
- Department of Biology, University of Oxford, Oxford, England, UK
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26
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Boyes D, Eagles M. The genome sequence of the Light Emerald, Campaea margaritaria (Linnaeus, 1761). Wellcome Open Res 2023; 8:476. [PMID: 38404638 PMCID: PMC10891428 DOI: 10.12688/wellcomeopenres.20136.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/05/2023] [Indexed: 02/27/2024] Open
Abstract
We present a genome assembly from an individual male Campaea margaritaria (the Light Emerald; Arthropoda; Insecta; Lepidoptera; Geometridae). The genome sequence is 335.2 megabases in span. The whole assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 16.9 kilobases in length. Gene annotation of this assembly on Ensembl identified 16,403 protein coding genes.
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Affiliation(s)
- Douglas Boyes
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
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27
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Sivell O, Sivell D, Mitchell R. The genome sequence of a leaf beetle, Cryptocephalus moraei (Linnaeus, 1758). Wellcome Open Res 2023; 8:467. [PMID: 38680651 PMCID: PMC11053346 DOI: 10.12688/wellcomeopenres.19522.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/31/2023] [Indexed: 05/01/2024] Open
Abstract
We present a genome assembly from an individual female Cryptocephalus moraei (a leaf beetle; Arthropoda; Insecta; Coleoptera; Chrysomelidae). The genome sequence is 500.5 megabases in span. Most of the assembly is scaffolded into 15 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 15.68 kilobases in length.
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28
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Christenhusz MJM, Fay MF. The genome sequence of common fleabane, Pulicaria dysenterica (L.) Bernh. (Asteraceae). Wellcome Open Res 2023; 8:447. [PMID: 38009086 PMCID: PMC10674090 DOI: 10.12688/wellcomeopenres.20003.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/05/2023] [Indexed: 11/28/2023] Open
Abstract
We present a genome assembly from an individual Pulicaria dysenterica (common fleabane; Tracheophyta; Magnoliopsida; Asterales; Asteraceae). The genome sequence is 833.2 megabases in span. Most of the assembly is scaffolded into 9 chromosomal pseudomolecules. The mitochondrial and plastid genomes were assembled and have lengths of 375.47 kilobases and 150.94 kilobases respectively.
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29
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Boyes D, Boyes C. The genome sequence of the Ingrailed Clay, Diarsia mendica (Fabricius, 1775). Wellcome Open Res 2023; 8:448. [PMID: 38333733 PMCID: PMC10850848 DOI: 10.12688/wellcomeopenres.20106.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/21/2023] [Indexed: 02/10/2024] Open
Abstract
We present a genome assembly from an individual male Diarsia mendica (the Ingrailed Clay; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 727.9 megabases in span. Most of the assembly is scaffolded into 32 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.37 kilobases in length. Gene annotation of this assembly on Ensembl identified 14,077 protein coding genes.
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Affiliation(s)
- Douglas Boyes
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
| | - Clare Boyes
- Independent researcher, Welshpool, Wales, UK
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30
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Wawman DC, Candelin G. The genome sequence of the Swift Louse Fly Crataerina pallida (Latreille, 1812). Wellcome Open Res 2023; 8:434. [PMID: 37920844 PMCID: PMC10618637 DOI: 10.12688/wellcomeopenres.20097.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/19/2023] [Indexed: 11/04/2023] Open
Abstract
We present a genome assembly from an individual female Crataerina pallida (the Swift Louse Fly; Arthropoda; Insecta; Diptera; Hippoboscidae). The genome sequence is 177.0 megabases in span. Most of the assembly is scaffolded into 6 chromosomal pseudomolecules, including the X chromosome. The mitochondrial genome has also been assembled and is 21.57 kilobases in length.
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Affiliation(s)
- Denise C. Wawman
- Edward Grey Institute, Department of Biology, University of Oxford, Oxford, England, UK
| | - George Candelin
- Oxford University Museum of Natural History, Oxford, England, UK
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31
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Crowley LM, Akinmusola RY. The genome sequence of a druid fly, Clusia tigrina (Fallén, 1820). Wellcome Open Res 2023; 8:430. [PMID: 38449716 PMCID: PMC10915360 DOI: 10.12688/wellcomeopenres.20109.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/21/2023] [Indexed: 03/08/2024] Open
Abstract
We present a genome assembly from an individual male Clusia tigrina (a druid fly; Arthropoda; Insecta; Diptera; Clusiidae). The genome sequence is 1,216.4 megabases in span. Most of the assembly is scaffolded into 5 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 17.68 kilobases in length.
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Affiliation(s)
- Liam M. Crowley
- Department of Biology, University of Oxford, Oxford, England, UK
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32
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Boyes D, Boyes C. The genome sequence of the Scalloped Oak, Crocallis elinguaria (Linneas, 1758). Wellcome Open Res 2023; 8:426. [PMID: 38644930 PMCID: PMC11031643 DOI: 10.12688/wellcomeopenres.20081.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/18/2023] [Indexed: 04/23/2024] Open
Abstract
We present a genome assembly from an individual female Crocallis elinguaria (the Scalloped Oak; Arthropoda; Insecta; Lepidoptera; Geometridae). The genome sequence is 430.4 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules, including the Z and W sex chromosomes. The mitochondrial genome has also been assembled and is 16.86 kilobases in length. Gene annotation of this assembly on Ensembl identified 17,741 protein coding genes.
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Affiliation(s)
- Douglas Boyes
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
| | - Clare Boyes
- Independent researcher, Welshpool, Wales, UK
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33
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Edgecombe GD, Sivell D. The genome sequence of the centipede Strigamia acuminata (Leach, 1816). Wellcome Open Res 2023; 8:420. [PMID: 37808388 PMCID: PMC10556566 DOI: 10.12688/wellcomeopenres.19941.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/18/2023] [Indexed: 10/10/2023] Open
Abstract
We present a genome assembly from an individual male Strigamia acuminata (centipede; Arthropoda; Chilopoda; Geophilomorpha; Geophilidae; Linotaeniinae). The genome sequence is 237.5 megabases in span. Most of the assembly is scaffolded into 11 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 15.07 kilobases in length.
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34
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Hawkins SJ, Mieszkowska N, Mrowicki R. The genome sequence of the common limpet, Patella vulgata (Linnaeus, 1758). Wellcome Open Res 2023; 8:418. [PMID: 37994322 PMCID: PMC10663661 DOI: 10.12688/wellcomeopenres.20008.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/06/2023] [Indexed: 11/24/2023] Open
Abstract
We present a genome assembly from an individual Patella vulgata (the common limpet; Mollusca; Gastropoda; Patellogastropoda; Patellidae). The genome sequence is 695.4 megabases in span. Most of the assembly is scaffolded into 9 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 14.93 kilobases in length. Gene annotation of this assembly on Ensembl identified 19,378 protein coding genes.
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Affiliation(s)
| | | | - Rob Mrowicki
- The Marine Biological Association, Plymouth, England, UK
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35
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Christenhusz MJM. The genome sequence of bittersweet, Solanum dulcamara L. (Solanaceae). Wellcome Open Res 2023; 8:409. [PMID: 37869734 PMCID: PMC10585204 DOI: 10.12688/wellcomeopenres.20004.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/05/2023] [Indexed: 10/24/2023] Open
Abstract
We present a genome assembly from an individual Solanum dulcamara (bittersweet; Eudicot; Magnoliopsida; Solanales; Solanaceae). The genome sequence is 946.3 megabases in span. Most of the assembly is scaffolded into 12 chromosomal pseudomolecules. The mitochondrial and plastid genomes have also been assembled, with lengths of 459.22 kilobases and 161.98 kilobases respectively.
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36
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Barclay MVL. The genome sequence of a ground beetle, Leistus spinibarbis (Fabricius, 1775). Wellcome Open Res 2023; 8:412. [PMID: 37881256 PMCID: PMC10594052 DOI: 10.12688/wellcomeopenres.19997.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/04/2023] [Indexed: 10/27/2023] Open
Abstract
We present a genome assembly from an individual male Leistus spinibarbis (a ground beetle; Arthropoda; Insecta; Coleoptera; Carabidae). The genome sequence is 235.1 megabases in span. Most of the assembly is scaffolded into 23 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 15.82 kilobases in length. Gene annotation of this assembly on Ensembl identified 23,576 protein coding genes.
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37
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Falk S, Monks J. The genome sequence of the painted nomad bee, Nomada fucata (Panzer, 1798). Wellcome Open Res 2023; 8:395. [PMID: 38385126 PMCID: PMC10879756 DOI: 10.12688/wellcomeopenres.19927.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/18/2023] [Indexed: 02/23/2024] Open
Abstract
We present a genome assembly from an individual female Nomada fucata (the painted nomad bee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 264.1 megabases in span. Most of the assembly is scaffolded into 8 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 22.06 kilobases in length. Gene annotation of this assembly on Ensembl identified 10,173 protein coding genes.
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Affiliation(s)
- Steven Falk
- Independent researcher, Kenilworth, England, UK
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38
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Falk S, Monks J. The genome sequence of the fork-jawed nomad bee, Nomada ruficornis (Linnaeus, 1758). Wellcome Open Res 2023; 8:394. [PMID: 38058536 PMCID: PMC10697131 DOI: 10.12688/wellcomeopenres.19928.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/18/2023] [Indexed: 12/08/2023] Open
Abstract
We present a genome assembly from an individual male Nomada ruficornis (the fork-jawed nomad bee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 273.0 megabases in span. Most of the assembly is scaffolded into 16 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 20.66 kilobases in length.
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Affiliation(s)
- Steven Falk
- Independent researcher, Kenilworth, England, UK
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39
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Falk S, Lennon R. The genome sequence of a satellite fly, Leucophora obtusa (Zetterstedt, 1837). Wellcome Open Res 2023; 8:392. [PMID: 38283326 PMCID: PMC10811419 DOI: 10.12688/wellcomeopenres.19920.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/17/2023] [Indexed: 01/30/2024] Open
Abstract
We present a genome assembly from an individual female Leucophora obtusa (a satellite fly; Arthropoda; Insecta; Diptera; Anthomyiidae). The genome sequence is 1,289.8 megabases in span. Most of the assembly is scaffolded into 6 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 18.72 kilobases in length.
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Affiliation(s)
- Steven Falk
- Independent researcher, Kenilworth, England, UK
| | - Rachel Lennon
- School of Biodiversity, One Health and Veterinary Medicine, University of Glasgow, Glasgow, Scotland, UK
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40
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Crowley LM, Price BW, Allan EL, Eagles M. The genome sequence of the Common Darter, Sympetrum striolatum (Charpentier, 1840). Wellcome Open Res 2023; 8:389. [PMID: 38434743 PMCID: PMC10904951 DOI: 10.12688/wellcomeopenres.19937.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/18/2023] [Indexed: 03/05/2024] Open
Abstract
We present a genome assembly from an individual female Sympetrum striolatum (the Common Darter; Arthropoda; Insecta; Odonata; Libellulidae). The genome sequence is 1349.6 megabases in span. Most of the assembly is scaffolded into 12 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 16.16 kilobases in length.
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41
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Lawniczak MK, Crowley LM, McAlister E. The genome sequence of the dark-edged bee fly, Bombylius major (Linnaeus, 1758). Wellcome Open Res 2023; 8:379. [PMID: 38533437 PMCID: PMC10964003 DOI: 10.12688/wellcomeopenres.19804.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/27/2023] [Indexed: 03/28/2024] Open
Abstract
We present a genome assembly from an individual male Bombylius major (the dark-edged bee fly; Arthropoda; Insecta; Diptera; Bombyliidae). The genome sequence is 304.3 megabases in span. The whole assembly is scaffolded into 7 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 17.8 kilobases in length. Gene annotation of this assembly on Ensembl identified 10,852 protein coding genes.
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Affiliation(s)
| | - Liam M. Crowley
- Department of Biology, University of Oxford, Oxford, England, UK
| | | | - University of Oxford and Wytham Woods Genome Acquisition Lab
- Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK
- Department of Biology, University of Oxford, Oxford, England, UK
- Natural History Museum, London, England, UK
| | - Darwin Tree of Life Barcoding collective
- Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK
- Department of Biology, University of Oxford, Oxford, England, UK
- Natural History Museum, London, England, UK
| | - Wellcome Sanger Institute Tree of Life programme
- Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK
- Department of Biology, University of Oxford, Oxford, England, UK
- Natural History Museum, London, England, UK
| | - Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective
- Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK
- Department of Biology, University of Oxford, Oxford, England, UK
- Natural History Museum, London, England, UK
| | - Tree of Life Core Informatics collective
- Tree of Life, Wellcome Sanger Institute, Hinxton, England, UK
- Department of Biology, University of Oxford, Oxford, England, UK
- Natural History Museum, London, England, UK
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42
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Crowley LM, Sivell O, Ashworth M, Poole O. The genome sequence of the Figwort Cheilosia, Cheilosia variabilis (Panzer, 1798). Wellcome Open Res 2023; 8:377. [PMID: 37981983 PMCID: PMC10654491 DOI: 10.12688/wellcomeopenres.19851.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/08/2023] [Indexed: 11/21/2023] Open
Abstract
We present a genome assembly from an individual male Cheilosia variabilis (the Figwort Cheilosia; Arthropoda; Insecta; Diptera; Syrphidae). The genome sequence is 414.7 megabases in span. Most of the assembly is scaffolded into 7 chromosomal pseudomolecules, including the X and Y sex chromosomes. The mitochondrial genome has also been assembled and is 16.77 kilobases in length.
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Affiliation(s)
| | | | | | | | - University of Oxford and Wytham Woods Genome Acquisition Lab
- University of Oxford, Oxford, England, UK
- Natural History Museum, London, England, UK
- Independent researcher, Yeovil, England, UK
- University of Exeter, Penryn, England, UK
| | - Natural History Museum Genome Acquisition Lab
- University of Oxford, Oxford, England, UK
- Natural History Museum, London, England, UK
- Independent researcher, Yeovil, England, UK
- University of Exeter, Penryn, England, UK
| | - Darwin Tree of Life Barcoding collective
- University of Oxford, Oxford, England, UK
- Natural History Museum, London, England, UK
- Independent researcher, Yeovil, England, UK
- University of Exeter, Penryn, England, UK
| | - Wellcome Sanger Institute Tree of Life programme
- University of Oxford, Oxford, England, UK
- Natural History Museum, London, England, UK
- Independent researcher, Yeovil, England, UK
- University of Exeter, Penryn, England, UK
| | - Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective
- University of Oxford, Oxford, England, UK
- Natural History Museum, London, England, UK
- Independent researcher, Yeovil, England, UK
- University of Exeter, Penryn, England, UK
| | - Tree of Life Core Informatics collective
- University of Oxford, Oxford, England, UK
- Natural History Museum, London, England, UK
- Independent researcher, Yeovil, England, UK
- University of Exeter, Penryn, England, UK
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Brittain R, Brenen M, McTierney S, Adkins P, Mrowicki R, Harley J. The genome sequence of the European plaice, Pleuronectes platessa (Linnaeus, 1758). Wellcome Open Res 2023; 8:367. [PMID: 38586161 PMCID: PMC10997986 DOI: 10.12688/wellcomeopenres.19397.1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/16/2023] [Indexed: 04/09/2024] Open
Abstract
We present a genome assembly from an individual Pleuronectes platessa(the European plaice; Chordata; Actinopteri; Pleuronectiformes; Pleuronectidae). The genome sequence is 687.4 megabases in span. Most of the assembly is scaffolded into 24 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 17.4 kilobases in length.
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Affiliation(s)
| | | | - Sean McTierney
- The Marine Biological Association, Plymouth, England, UK
| | - Patrick Adkins
- The Marine Biological Association, Plymouth, England, UK
| | | | - Joanna Harley
- The Marine Biological Association, Plymouth, England, UK
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Short S, Green Etxabe A, Robinson A, Spurgeon D, Kille P. The genome sequence of the red compost earthworm, Lumbricus rubellus (Hoffmeister, 1843). Wellcome Open Res 2023; 8:354. [PMID: 38618197 PMCID: PMC11015115 DOI: 10.12688/wellcomeopenres.19834.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/02/2023] [Indexed: 04/16/2024] Open
Abstract
We present a genome assembly from an individual Lumbricus rubellus (the red compost earthworm; Annelida; Clitellata; Haplotaxida; Lumbricidae). The genome sequence is 787.5 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 15.81 kilobases in length. Gene annotation of this assembly on Ensembl identified 33,426 protein coding genes.
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Affiliation(s)
- Stephen Short
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
| | | | - Alex Robinson
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
| | - David Spurgeon
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
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Skipp S, Ablett J. The genome sequence of the Whirlpool Ramshorn snail, Anisus vortex (Linnaeus, 1758). Wellcome Open Res 2023; 8:344. [PMID: 37674878 PMCID: PMC10477736 DOI: 10.12688/wellcomeopenres.19836.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/02/2023] [Indexed: 09/08/2023] Open
Abstract
We present a genome assembly from an individual Anisus vortex (the Whirlpool Ramshorn snail; Mollusca; Gastropoda; Hygrophila; Lymnaeoidea; Planorbidae). The genome sequence is 869.5 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 13.57 kilobases in length.
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46
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Hayward A, Lohse K, Vila R, Laetsch DR, Hedlund JS. The genome sequence of the Brown Argus, Aricia agestis (Denis & Schiffermüller, 1775). Wellcome Open Res 2023; 8:336. [PMID: 38404635 PMCID: PMC10884594 DOI: 10.12688/wellcomeopenres.19784.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/24/2023] [Indexed: 02/27/2024] Open
Abstract
We present genome assemblies from two male Aricia agestis specimens (the Brown Argus; Arthropoda; Insecta; Lepidoptera; Lycaenidae). The genome sequences are 435.3 and 437.4 megabases in span. Each assembly is scaffolded into 23 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genomes were assembled and are 15.47 and 15.45 kilobases in length. Gene annotation of these assemblies on Ensembl identified 12,688 and 12,654 protein coding genes.
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Affiliation(s)
- Alex Hayward
- College of Life and Environmental Sciences, University of Exeter, Exeter, England, UK
| | - Konrad Lohse
- Institute of Ecology and Evolution, The University of Edinburgh, Edinburgh, Scotland, UK
| | - Roger Vila
- Institut de Biologia Evolutiva, CSIC - Universitat Pompeu Fabra, Barcelona, Spain
| | - Dominik R. Laetsch
- Institute of Ecology and Evolution, The University of Edinburgh, Edinburgh, Scotland, UK
| | | | - Wellcome Sanger Institute Tree of Life programme
- College of Life and Environmental Sciences, University of Exeter, Exeter, England, UK
- Institute of Ecology and Evolution, The University of Edinburgh, Edinburgh, Scotland, UK
- Institut de Biologia Evolutiva, CSIC - Universitat Pompeu Fabra, Barcelona, Spain
- Department of Evolutionary Ecology, Lund University, Lund, Sweden
| | - Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective
- College of Life and Environmental Sciences, University of Exeter, Exeter, England, UK
- Institute of Ecology and Evolution, The University of Edinburgh, Edinburgh, Scotland, UK
- Institut de Biologia Evolutiva, CSIC - Universitat Pompeu Fabra, Barcelona, Spain
- Department of Evolutionary Ecology, Lund University, Lund, Sweden
| | - Tree of Life Core Informatics collective
- College of Life and Environmental Sciences, University of Exeter, Exeter, England, UK
- Institute of Ecology and Evolution, The University of Edinburgh, Edinburgh, Scotland, UK
- Institut de Biologia Evolutiva, CSIC - Universitat Pompeu Fabra, Barcelona, Spain
- Department of Evolutionary Ecology, Lund University, Lund, Sweden
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Findlay JD, Foster G. The genome sequence of a riffle beetle, Elmis aenea (Müller, 1806). Wellcome Open Res 2023; 8:322. [PMID: 37990650 PMCID: PMC10660300 DOI: 10.12688/wellcomeopenres.19778.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/20/2023] [Indexed: 11/23/2023] Open
Abstract
We present a genome assembly from an individual female Elmis aenea (a riffle beetle; Arthropoda; Insecta; Coleoptera; Elmidae). The genome sequence is 516.5 megabases in span. Most of the assembly is scaffolded into 9 chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 18.06 kilobases in length.
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Affiliation(s)
| | - Garth Foster
- Aquatic Coleoptera Conservation Trust, Ayr, Scotland, UK
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Christenhusz MJM, Bell D, Twyford AD. The genome sequence of common ivy, Hedera helix L., 1753. Wellcome Open Res 2023; 8:325. [PMID: 38046190 PMCID: PMC10690035 DOI: 10.12688/wellcomeopenres.19662.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/03/2023] [Indexed: 12/05/2023] Open
Abstract
We present a genome assembly from a specimen of Hedera helix (common ivy; Streptophyta; Magnoliopsida; Apiales; Araliaceae). The genome sequence is 1,199.4 megabases in span. Most of the assembly is scaffolded into 24 chromosomal pseudomolecules. The mitochondrial and plastid genomes have also been assembled and are 609.2 and 162.2 kilobases in length respectively.
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Affiliation(s)
| | - David Bell
- Royal Botanic Garden Edinburgh, Edinburgh, Scotland, UK
| | - Alex D. Twyford
- Royal Botanic Garden Edinburgh, Edinburgh, Scotland, UK
- The University of Edinburgh, Edinburgh, Scotland, UK
| | | | | | - Plant Genome Sizing collective
- Royal Botanic Gardens Kew, Richmond, England, UK
- Royal Botanic Garden Edinburgh, Edinburgh, Scotland, UK
- The University of Edinburgh, Edinburgh, Scotland, UK
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Boyes D, Chua P. The genome sequence of the Oak Hook-tip, Watsonalla binaria (Hufnagel, 1767). Wellcome Open Res 2023; 8:324. [PMID: 37885811 PMCID: PMC10598455 DOI: 10.12688/wellcomeopenres.19634.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/27/2023] [Indexed: 10/28/2023] Open
Abstract
We present a genome assembly from an individual female Watsonalla binaria (the Oak Hook-tip; Arthropoda; Insecta; Lepidoptera; Drepanidae). The genome sequence is 333.0 megabases in span. Most of the assembly is scaffolded into 33 chromosomal pseudomolecules, including the W and Z sex chromosomes. The mitochondrial genome has also been assembled and is 15.24 kilobases in length. Gene annotation of this assembly on Ensembl identified 16,002 protein coding genes.
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Affiliation(s)
- Douglas Boyes
- UK Centre for Ecology & Hydrology, Wallingford, England, UK
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Schley RJ, Leitch IJ, Christenhusz MJM. The genome sequence of the tree of heaven, Ailanthus altissima (Mill.) Swingle, 1916. Wellcome Open Res 2023; 8:321. [PMID: 37663793 PMCID: PMC10472066 DOI: 10.12688/wellcomeopenres.19628.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/30/2023] [Indexed: 09/05/2023] Open
Abstract
We present a genome assembly from an individual Ailanthus altissima (tree of heaven; Streptophyta; Magnoliopsida; Sapindales; Simaroubaceae). The genome sequence is 939 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies are 661.1 kilobases and 161.1 kilobases long, respectively.
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