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Madeira P, Reddy MM, Assis J, Bolton JJ, Rothman MD, Anderson RJ, Kandjengo L, Kreiner A, Coleman MA, Wernberg T, De Clerck O, Leliaert F, Bandeira S, Ada AM, Neiva J, Pearson GA, Serrão EA. Cryptic diversity in southern African kelp. Sci Rep 2024; 14:11071. [PMID: 38745036 PMCID: PMC11093989 DOI: 10.1038/s41598-024-61336-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 05/04/2024] [Indexed: 05/16/2024] Open
Abstract
The southern coast of Africa is one of the few places in the world where water temperatures are predicted to cool in the future. This endemism-rich coastline is home to two sister species of kelps of the genus Ecklonia maxima and Ecklonia radiata, each associated with specific thermal niches, and occuring primarily on opposite sides of the southern tip of Africa. Historical distribution records indicate that E. maxima has recently shifted its distribution ~ 70 km eastward, to sites where only E. radiata was previously reported. The contact of sister species with contrasting thermal affinities and the occurrence of mixed morphologies raised the hypothesis that hybridization might be occurring in this contact zone. Here we describe the genetic structure of the genus Ecklonia along the southern coast of Africa and investigate potential hybridization and cryptic diversity using a combination of nuclear microsatellites and mitochondrial markers. We found that both species have geographically discrete genetic clusters, consistent with expected phylogeographic breaks along this coastline. In addition, depth-isolated populations were found to harbor unique genetic diversity, including a third Ecklonia lineage. Mito-nuclear discordance and high genetic divergence in the contact zones suggest multiple hybridization events between Ecklonia species. Discordance between morphological and molecular identification suggests the potential influence of abiotic factors leading to convergent phenotypes in the contact zones. Our results highlight an example of cryptic diversity and hybridization driven by contact between two closely related keystone species with contrasting thermal affinities.
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Affiliation(s)
- Pedro Madeira
- CCMAR, University of Algarve, Gambelas, Faro, Portugal.
| | - Maggie M Reddy
- Department of Biological Sciences, University of Cape Town, Cape Town, 7701, South Africa.
| | - Jorge Assis
- CCMAR, University of Algarve, Gambelas, Faro, Portugal
- Faculty of Bioscience and Aquaculture, Nord Universitet, Bodø, Norway
| | - John J Bolton
- Department of Biological Sciences, University of Cape Town, Cape Town, 7701, South Africa.
| | - Mark D Rothman
- Department of Biological Sciences, University of Cape Town, Cape Town, 7701, South Africa.
- Department of Environment, Forestry and Fisheries, Private Bag X2, Vlaeberg, 8012, South Africa.
| | - Robert J Anderson
- Department of Biological Sciences, University of Cape Town, Cape Town, 7701, South Africa
| | - Lineekela Kandjengo
- Department of Fisheries and Ocean Sciences, University of Namibia, Sam Nujoma Campus, Henties Bay, Namibia
| | - Anja Kreiner
- National Marine Information and Research Centre, Ministry of Fisheries and Marine Resources, Swakopmund, Namibia
| | - Melinda A Coleman
- New South Wales Fisheries, National Marine Science Centre, 2 Bay Drive, Coffs Harbour, NSW, 2450, Australia
- National Marine Science Centre, Southern Cross University, 2 Bay Drive, Coffs Harbour, NSW, 2450, Australia
- UWA Oceans Institute and School of Biological Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia
| | - Thomas Wernberg
- UWA Oceans Institute and School of Biological Sciences, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia
| | - Olivier De Clerck
- Biology Department, Ghent University, Krijgslaan 281 S8, 9000, Ghent, Belgium
| | | | - Salomão Bandeira
- Department of Biological Sciences, Eduardo Mondlane University, Maputo, Mozambique
| | - Abdul M Ada
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, 70803, USA
| | - João Neiva
- CCMAR, University of Algarve, Gambelas, Faro, Portugal
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Saenz‐Agudelo P, Peluso L, Nespolo R, Broitman BR, Haye PA, Lardies MA. Population genomic analyses reveal hybridization and marked differences in genetic structure of
Scurria
limpet sister species with parapatric distributions across the South Eastern Pacific. Ecol Evol 2022; 12:e8888. [PMID: 35571762 PMCID: PMC9078047 DOI: 10.1002/ece3.8888] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Revised: 03/30/2022] [Accepted: 04/08/2022] [Indexed: 11/08/2022] Open
Affiliation(s)
- Pablo Saenz‐Agudelo
- Instituto de Ciencias Ambientales y Evolutivas Universidad Austral de Chile Valdivia Chile
- ANID‐ Millennium Science Initiative Nucleus (NUTME) Las Cruces Chile
| | - Lívia Peluso
- Instituto de Ciencias Ambientales y Evolutivas Universidad Austral de Chile Valdivia Chile
- Doctorado en Ciencias Mención Ecología y Evolución Escuela de Graduados Facultad de Ciencias Universidad Austral de Chile Valdivia Chile
| | - Roberto Nespolo
- Instituto de Ciencias Ambientales y Evolutivas Universidad Austral de Chile Valdivia Chile
- ANID‐ Millennium Science Initiative Nucleus (LiLi) Valdivia Chile
- Center for Applied Ecology and Sustainability (CAPES) Santiago Chile
- Millennium Institute for Integrative Biology (iBio) Santiago Chile
| | - Bernardo R. Broitman
- Departamento de Ciencias Facultad de Artes Liberales Universidad Adolfo Ibañez Santiago Chile
- ANID‐ Millennium Science Initiative Nucleus UPWELL Santiago Chile
- Instituto Milenio en Socio‐Ecología Costera (SECOS) Santiago Chile
| | - Pilar A. Haye
- Instituto Milenio en Socio‐Ecología Costera (SECOS) Santiago Chile
- Departamento de Biología Marina Universidad Católica del Norte Coquimbo Chile
| | - Marco A. Lardies
- Departamento de Ciencias Facultad de Artes Liberales Universidad Adolfo Ibañez Santiago Chile
- Instituto Milenio en Socio‐Ecología Costera (SECOS) Santiago Chile
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Zhan SH, Chen L, Liao CP, Chang WR, Li CC, Tang GY, Liou CY, Wang WL, Wang SW, Liu SL. Geographic distance, sedimentation, and substrate shape cryptic crustose coralline algal assemblages in the world's largest subtropical intertidal algal reef. Mol Ecol 2022; 31:3056-3071. [PMID: 35377521 DOI: 10.1111/mec.16455] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 03/14/2022] [Accepted: 03/28/2022] [Indexed: 11/30/2022]
Abstract
Algal reefs, concreted by crustose coralline algae (CCA), are the main biotic reefs in temperate waters but rare in the subtropics and tropics. The world's largest known intertidal algal reef in the subtropics is the Taoyuan Algal Reef (TAR) located in the northwestern coast of Taiwan. The biodiversity and ecology of the TAR are scarcely explored, and now the reef is imperiled by industrialization. Here, we document cryptic species of CCA in Taiwan, particularly the TAR, by sequencing the psbA genes of over 1,800 specimens collected across Taiwan. We also examine the ecological background of the TAR by surveying its benthic composition and measuring its environmental parameters. Our data reveal that the TAR harbors a high diversity of cryptic CCA species (27 molecular operational taxonomic units, or mOTUs), many of which are potentially new to science (18 mOTUs) and/or endemic to the TAR (9 mOTUs). Comparing the CCA species inventory of the TAR with the rest of Taiwan shows that the TAR represents a unique hotspot of CCA taxa in the waters of Taiwan. Our analyses show that variation in the CCA assemblages in the TAR is associated with geographic distance, sedimentation, and substrate type (for example, reef versus hermit crab shell), suggesting that dispersal limitation and contemporary environmental selection shape the CCA assemblages in the TAR. The data from this study can inform the monitoring of human impacts on the health of the TAR and contribute to our understanding of the ecological processes underlying algal reef development.
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Affiliation(s)
- Shing Hei Zhan
- Department of Zoology & Biodiversity Research Centre, University of British Columbia, BC, Canada
| | - Ling Chen
- Department of Life Science & Center for Ecology and Environment, Tunghai University, Taichung, 40704, Taiwan
| | - Chen-Pan Liao
- Department of Life Science & Center for Ecology and Environment, Tunghai University, Taichung, 40704, Taiwan.,Department of Biology, National Museum of Natural Science, Taichung, 404, Taiwan
| | - Wun-Ruei Chang
- Department of Life Science & Center for Ecology and Environment, Tunghai University, Taichung, 40704, Taiwan
| | - Cheng-Chin Li
- Department of Life Science & Center for Ecology and Environment, Tunghai University, Taichung, 40704, Taiwan
| | - Guang-You Tang
- Department of Life Science & Center for Ecology and Environment, Tunghai University, Taichung, 40704, Taiwan
| | - Ching-Yu Liou
- Endemic Species Research Institute, Jiji, Nantou, 552, Taiwan
| | - Wei-Lung Wang
- Department of Biology, National Changhua University of Education, Changhua, 500, Taiwan
| | - Shih-Wei Wang
- Department of Geology, National Museum of Natural Science, Taichung, 404, Taiwan
| | - Shao-Lun Liu
- Department of Life Science & Center for Ecology and Environment, Tunghai University, Taichung, 40704, Taiwan
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Ma KCK, Redelinghuys S, Gusha MNC, Dyantyi SB, McQuaid CD, Porri F. Intertidal estimates of sea urchin abundance reveal congruence in spatial structure for a guild of consumers. Ecol Evol 2021; 11:11930-11944. [PMID: 34522351 PMCID: PMC8427589 DOI: 10.1002/ece3.7958] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Revised: 06/22/2021] [Accepted: 06/24/2021] [Indexed: 11/27/2022] Open
Abstract
We hypothesized congruence in the spatial structure of abundance data sampled across multiple scales for an ecological guild of consumers that exploit similar nutritional and habitat resources. We tested this hypothesis on the spatial organization of abundance of an herbivorous guild of sea urchins. We also examined whether the amount of local along-shore rocky habitat can explain the observed spatial patterns of abundance. Standardized estimates of abundance of four intertidal sea urchins-Diadema cf. savignyi, Echinometra mathaei, Parechinus angulosus, and Stomopneustes variolaris-were determined by six observers at 105 sites across 2,850 km of coast of South Africa. For each species and observer, wavelet analysis was used on abundance estimates, after controlling for potential biases, to examine their spatial structure. The relationship between local sea urchin abundance and the amount of upstream and downstream rocky habitat, as defined by the prevailing ocean current, was also investigated. All species exhibited robust structure at scales of 75-220 km, despite variability among observers. Less robust structure in the abundances of three species was detected at larger scales of 430-898 km. Abundance estimates of sympatric populations of two species (D. cf. savignyi and E. mathaei) were positively correlated with the amount of rocky habitat upstream of the site, suggesting that upstream populations act as larval sources across a wide range of scales. No relationship between abundance and habitat size was found for P. angulosus or S. variolaris. Within the range of scales examined, we found robust congruence in spatial structure in abundance at the lower, but not the larger, range of scales for all four species. The relationship between abundance and upstream habitat availability in two species suggests that larval supply from upstream populations was probably the mechanism linking habitat size and abundance.
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Affiliation(s)
- Kevin C. K. Ma
- Department of Zoology and EntomologyRhodes UniversityGrahamstownSouth Africa
| | - Suzanne Redelinghuys
- Department of Zoology and EntomologyRhodes UniversityGrahamstownSouth Africa
- South African Institute for Aquatic BiodiversityGrahamstownSouth Africa
| | - Molline N. C. Gusha
- Department of Zoology and EntomologyRhodes UniversityGrahamstownSouth Africa
| | | | | | - Francesca Porri
- Department of Zoology and EntomologyRhodes UniversityGrahamstownSouth Africa
- South African Institute for Aquatic BiodiversityGrahamstownSouth Africa
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