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Chockanathan U, Padmanabhan K. Differential disruptions in population coding along the dorsal-ventral axis of CA1 in the APP/PS1 mouse model of Aβ pathology. PLoS Comput Biol 2024; 20:e1012085. [PMID: 38709845 PMCID: PMC11098488 DOI: 10.1371/journal.pcbi.1012085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Revised: 05/16/2024] [Accepted: 04/17/2024] [Indexed: 05/08/2024] Open
Abstract
Alzheimer's Disease (AD) is characterized by a range of behavioral alterations, including memory loss and psychiatric symptoms. While there is evidence that molecular pathologies, such as amyloid beta (Aβ), contribute to AD, it remains unclear how this histopathology gives rise to such disparate behavioral deficits. One hypothesis is that Aβ exerts differential effects on neuronal circuits across brain regions, depending on the neurophysiology and connectivity of different areas. To test this, we recorded from large neuronal populations in dorsal CA1 (dCA1) and ventral CA1 (vCA1), two hippocampal areas known to be structurally and functionally diverse, in the APP/PS1 mouse model of amyloidosis. Despite similar levels of Aβ pathology, dCA1 and vCA1 showed distinct disruptions in neuronal population activity as animals navigated a virtual reality environment. In dCA1, pairwise correlations and entropy, a measure of the diversity of activity patterns, were decreased in APP/PS1 mice relative to age-matched C57BL/6 controls. However, in vCA1, APP/PS1 mice had increased pair-wise correlations and entropy as compared to age matched controls. Finally, using maximum entropy models, we connected the microscopic features of population activity (correlations) to the macroscopic features of the population code (entropy). We found that the models' performance increased in predicting dCA1 activity, but decreased in predicting vCA1 activity, in APP/PS1 mice relative to the controls. Taken together, we found that Aβ exerts distinct effects across different hippocampal regions, suggesting that the various behavioral deficits of AD may reflect underlying heterogeneities in neuronal circuits and the different disruptions that Aβ pathology causes in those circuits.
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Affiliation(s)
- Udaysankar Chockanathan
- Department of Neuroscience, University of Rochester School of Medicine and Dentistry, Rochester, New York, United States of America
- Neuroscience Graduate Program, University of Rochester School of Medicine and Dentistry, Rochester, New York, United States of America
- Medical Scientist Training Program, University of Rochester School of Medicine and Dentistry, Rochester, New York, United States of America
- Ernest J. Del Monte Institute for Neuroscience, University of Rochester School of Medicine and Dentistry, Rochester, New York, United States of America
| | - Krishnan Padmanabhan
- Department of Neuroscience, University of Rochester School of Medicine and Dentistry, Rochester, New York, United States of America
- Neuroscience Graduate Program, University of Rochester School of Medicine and Dentistry, Rochester, New York, United States of America
- Medical Scientist Training Program, University of Rochester School of Medicine and Dentistry, Rochester, New York, United States of America
- Ernest J. Del Monte Institute for Neuroscience, University of Rochester School of Medicine and Dentistry, Rochester, New York, United States of America
- Center for Visual Sciences, University of Rochester School of Medicine and Dentistry, Rochester, New York, United States of America
- Intellectual and Developmental Disabilities Research Center, University of Rochester School of Medicine and Dentistry, Rochester, New York, United States of America
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Feng G, Joseph A, Dholakia K, Shang F, Pfeifer CW, Power D, Padmanabhan K, Schallek J. High-resolution structural and functional retinal imaging in the awake behaving mouse. Commun Biol 2023; 6:572. [PMID: 37248385 PMCID: PMC10227058 DOI: 10.1038/s42003-023-04896-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Accepted: 05/02/2023] [Indexed: 05/31/2023] Open
Abstract
The laboratory mouse has provided tremendous insight to the underpinnings of mammalian central nervous system physiology. In recent years, it has become possible to image single neurons, glia and vascular cells in vivo by using head-fixed preparations combined with cranial windows to study local networks of activity in the living brain. Such approaches have also succeeded without the use of general anesthesia providing insights to the natural behaviors of the central nervous system. However, the same has not yet been developed for the eye, which is constantly in motion. Here we characterize a novel head-fixed preparation that enables high-resolution adaptive optics retinal imaging at the single-cell level in awake-behaving mice. We reveal three new functional attributes of the normal eye that are overlooked by anesthesia: 1) High-frequency, low-amplitude eye motion of the mouse that is only present in the awake state 2) Single-cell blood flow in the mouse retina is reduced under anesthesia and 3) Mouse retinae thicken in response to ketamine/xylazine anesthesia. Here we show key benefits of the awake-behaving preparation that enables study of retinal physiology without anesthesia to study the normal retinal physiology in the mouse.
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Affiliation(s)
- Guanping Feng
- Department of Biomedical Engineering, University of Rochester, Rochester, NY, 14620, USA
- Center for Visual Science, University of Rochester, Rochester, NY, 14627, USA
| | - Aby Joseph
- Center for Visual Science, University of Rochester, Rochester, NY, 14627, USA
- The Institute of Optics, University of Rochester, Rochester, NY, 14620, USA
| | - Kosha Dholakia
- Department of Biomedical Engineering, University of Rochester, Rochester, NY, 14620, USA
- Center for Visual Science, University of Rochester, Rochester, NY, 14627, USA
| | - Fei Shang
- Center for Visual Science, University of Rochester, Rochester, NY, 14627, USA
- Department of Neuroscience, University of Rochester, Rochester, NY, 14642, USA
| | - Charles W Pfeifer
- Center for Visual Science, University of Rochester, Rochester, NY, 14627, USA
- Flaum Eye Institute, University of Rochester, Rochester, NY, 14642, USA
| | - Derek Power
- Center for Visual Science, University of Rochester, Rochester, NY, 14627, USA
| | - Krishnan Padmanabhan
- Center for Visual Science, University of Rochester, Rochester, NY, 14627, USA
- Department of Neuroscience, University of Rochester, Rochester, NY, 14642, USA
- Intellectual and Developmental Disabilities Research Center, University of Rochester, Rochester, NY, 14642, USA
| | - Jesse Schallek
- Center for Visual Science, University of Rochester, Rochester, NY, 14627, USA.
- Department of Neuroscience, University of Rochester, Rochester, NY, 14642, USA.
- Flaum Eye Institute, University of Rochester, Rochester, NY, 14642, USA.
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Oyaga MR, Serra I, Kurup D, Koekkoek SKE, Badura A. Delay eyeblink conditioning performance and brain-wide c-Fos expression in male and female mice. Open Biol 2023; 13:220121. [PMID: 37161289 PMCID: PMC10170203 DOI: 10.1098/rsob.220121] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/11/2023] Open
Abstract
Delay eyeblink conditioning has been extensively used to study associative learning and the cerebellar circuits underlying this task have been largely identified. However, there is a little knowledge on how factors such as strain, sex and innate behaviour influence performance during this type of learning. In this study, we used male and female mice of C57BL/6J (B6) and B6CBAF1 strains to investigate the effect of sex, strain and locomotion in delay eyeblink conditioning. We performed a short and a long delay eyeblink conditioning paradigm and used a c-Fos immunostaining approach to explore the involvement of different brain areas in this task. We found that both B6 and B6CBAF1 females reach higher learning scores compared to males in the initial stages of learning. This sex-dependent difference was no longer present as the learning progressed. Moreover, we found a strong positive correlation between learning scores and voluntary locomotion irrespective of the training duration. c-Fos immunostainings after the short paradigm showed positive correlations between c-Fos expression and learning scores in the cerebellar cortex and brainstem, as well as previously unreported areas. By contrast, after the long paradigm, c-Fos expression was only significantly elevated in the brainstem. Taken together, we show that differences in voluntary locomotion and activity across brain areas correlate with performance in delay eyeblink conditioning across strains and sexes.
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Affiliation(s)
- Maria Roa Oyaga
- Department of Neuroscience, Erasmus MC, 3000 Rotterdam, the Netherlands
| | - Ines Serra
- Department of Neuroscience, Erasmus MC, 3000 Rotterdam, the Netherlands
| | - Devika Kurup
- Department of Neuroscience, Erasmus MC, 3000 Rotterdam, the Netherlands
| | | | - Aleksandra Badura
- Department of Neuroscience, Erasmus MC, 3000 Rotterdam, the Netherlands
- Netherlands Institute of Neuroscience, Royal Dutch Academy for Arts and Sciences, Amsterdam 1105 BA, the Netherlands
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Divergence in Population Coding for Space between Dorsal and Ventral CA1. eNeuro 2021; 8:ENEURO.0211-21.2021. [PMID: 34433573 PMCID: PMC8425966 DOI: 10.1523/eneuro.0211-21.2021] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Revised: 08/16/2021] [Accepted: 08/18/2021] [Indexed: 11/25/2022] Open
Abstract
Molecular, anatomic, and behavioral studies show that the hippocampus is structurally and functionally heterogeneous, with dorsal hippocampus implicated in mnemonic processes and spatial navigation and ventral hippocampus involved in affective processes. By performing electrophysiological recordings of large neuronal populations in dorsal and ventral CA1 in head-fixed mice navigating a virtual environment, we found that this diversity resulted in different strategies for population coding of space. Populations of neurons in dorsal CA1 showed more complex patterns of activity, which resulted in a higher dimensionality of neural representations that translated to more information being encoded, as compared ensembles in vCA1. Furthermore, a pairwise maximum entropy model was better at predicting the structure of these global patterns of activity in ventral CA1 as compared with dorsal CA1. Taken together, the different coding strategies we uncovered likely emerge from anatomic and physiological differences along the longitudinal axis of hippocampus and that may, in turn, underpin the divergent ethological roles of dorsal and ventral CA1.
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Chockanathan U, Crosier EJW, Waddle S, Lyman E, Gerkin RC, Padmanabhan K. Changes in pairwise correlations during running reshape global network state in the main olfactory bulb. J Neurophysiol 2021; 125:1612-1623. [PMID: 33656931 DOI: 10.1152/jn.00464.2020] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Neural codes for sensory inputs have been hypothesized to reside in a broader space defined by ongoing patterns of spontaneous activity. To understand the structure of this spontaneous activity in the olfactory system, we performed high-density recordings of neural populations in the main olfactory bulb of awake mice. We observed changes in pairwise correlations of spontaneous activity between mitral and tufted (M/T) cells when animals were running, which resulted in an increase in the entropy of the population. Surprisingly, pairwise maximum entropy models that described the population activity using only assumptions about the firing rates and correlations of neurons were better at predicting the global structure of activity when animals were stationary as compared to when they were running, implying that higher order (3rd, 4th order) interactions governed population activity during locomotion. Taken together, we found that locomotion alters the functional interactions that shape spontaneous population activity at the earliest stages of olfactory processing, one synapse away from the sensory receptors in the nasal epithelium. These data suggest that the coding space available for sensory representations responds adaptively to the animal's behavioral state.NEW & NOTEWORTHY The organization and structure of spontaneous population activity in the olfactory system places constraints of how odor information is represented. Using high-density electrophysiological recordings of mitral and tufted cells, we found that running increases the dimensionality of spontaneous activity, implicating higher order interactions among neurons during locomotion. Behavior, thus, flexibly alters neuronal activity at the earliest stages of sensory processing.
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Affiliation(s)
- Udaysankar Chockanathan
- Medical Scientist Training Program (MSTP), University of Rochester School of Medicine, Rochester, New York.,Department of Neuroscience and Neuroscience Graduate Program (NGP), University of Rochester School of Medicine, Rochester, New York
| | - Emily J W Crosier
- Department of Neuroscience and Neuroscience Graduate Program (NGP), University of Rochester School of Medicine, Rochester, New York
| | - Spencer Waddle
- Department of Physics, University of Delaware, Newark, Delaware
| | - Edward Lyman
- Department of Physics, University of Delaware, Newark, Delaware
| | - Richard C Gerkin
- School of Life Sciences, Arizona State University, Tempe, Arizona
| | - Krishnan Padmanabhan
- Medical Scientist Training Program (MSTP), University of Rochester School of Medicine, Rochester, New York.,Department of Neuroscience and Neuroscience Graduate Program (NGP), University of Rochester School of Medicine, Rochester, New York.,Center for Visual Sciences, University of Rochester School of Medicine, Rochester, New York
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Warner EJ, Padmanabhan K. Sex differences in head-fixed voluntary running behavior in C57BL/6J mice. Eur J Neurosci 2019; 51:721-730. [PMID: 31849113 PMCID: PMC7069786 DOI: 10.1111/ejn.14654] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2019] [Revised: 12/06/2019] [Accepted: 12/13/2019] [Indexed: 12/01/2022]
Abstract
Sex differences in running behaviors between female and male mice occur naturally in the wild. Recent experiments using head-fixed mice on a voluntary running wheel have exploited analogous locomotor activity to gain insight into the neural underpinnings of a number of behaviors ranging from spatial navigation to decision-making. It is however largely unknown if sex differences exist between females and males in a head-fixed experimental paradigm. To address this, we characterized locomotor activity in head-fixed female and male C57BL/6J mice on a voluntary running wheel. First, we found that over the initial 7-day period, on average, animals increased both the velocity and the time spent running. Furthermore, we found that female mice habituated to running forward over the initial 2 days of encountering the wheel, while male mice took up to 4 days to habituate to running forward. Taken together, we characterized features of a sexually divergent behavior in head-fixed running that should be considered in experiments employing female and male mice.
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Affiliation(s)
- Emily J Warner
- Department of Neuroscience, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA.,Neuroscience Graduate Program (NGP), University of Rochester School of Medicine and Dentistry, Rochester, NY, USA.,The Ernest J. Del Monte Institute for Neuroscience, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA
| | - Krishnan Padmanabhan
- Department of Neuroscience, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA.,Neuroscience Graduate Program (NGP), University of Rochester School of Medicine and Dentistry, Rochester, NY, USA.,The Ernest J. Del Monte Institute for Neuroscience, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA.,Center for Visual Science, University of Rochester School of Medicine and Dentistry, Rochester, NY, USA
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