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Somveille M, Bossu CM, DeSaix MG, Alvarado AH, Gómez Villaverde S, Rodríguez Otero G, Hernández-Baños BE, Smith TB, Ruegg KC. Broad-scale seasonal climate tracking is a consequence, not a driver, of avian migratory connectivity. Ecol Lett 2024; 27:e14496. [PMID: 39132717 DOI: 10.1111/ele.14496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Revised: 07/22/2024] [Accepted: 07/23/2024] [Indexed: 08/13/2024]
Abstract
Tracking climatic conditions throughout the year is often assumed to be an adaptive behaviour underlying seasonal migration patterns in animal populations. We investigate this hypothesis using genetic markers data to map migratory connectivity for 27 genetically distinct bird populations from 7 species. We found that the variation in seasonal climate tracking across our suite of populations at a continental scale is more likely a consequence, rather than a direct driver, of migratory connectivity, which is primarily shaped by energy efficiency-i.e., optimizing the balance between accessing available resources and movement costs. However, our results also suggest that regional-scale seasonal precipitation tracking affects population migration destinations, thus revealing a potential scale dependency of ecological processes driving migration. Our results have implications for the conservation of these migratory species under climate change, as populations tracking climate seasonally are potentially at higher risk if they adapt to a narrow range of climatic conditions.
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Affiliation(s)
- Marius Somveille
- Department of Genetics, Evolution and Environment, Centre for Biodiversity and Environment Research, University College London, London, UK
- Department of Biology, Colorado State University, Fort Collins, Colorado, USA
- School of Environmental Sciences, University of East Anglia, Norwich, UK
| | - Christen M Bossu
- Department of Biology, Colorado State University, Fort Collins, Colorado, USA
| | - Matthew G DeSaix
- Department of Biology, Colorado State University, Fort Collins, Colorado, USA
| | - Allison H Alvarado
- Department of Biology, California State University Channel Islands, Camarillo, California, USA
| | | | - Genaro Rodríguez Otero
- Museo de Zoología, Departmento de Biología Evolutiva, Facultad de Ciencias, Universidad Nacional Autónoma de México (UNAM), Ciudad Universitaria, Mexico City, Mexico
| | - Blanca E Hernández-Baños
- Museo de Zoología, Departmento de Biología Evolutiva, Facultad de Ciencias, Universidad Nacional Autónoma de México (UNAM), Ciudad Universitaria, Mexico City, Mexico
| | - Thomas B Smith
- Center for Tropical Research, Institute for the Environment and Sustainability, University of California, Los Angeles, California, USA
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, California, USA
| | - Kristen C Ruegg
- Department of Biology, Colorado State University, Fort Collins, Colorado, USA
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2
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Gu Z, Dixon A, Zhan X. Genetics and Evolution of Bird Migration. Annu Rev Anim Biosci 2024; 12:21-43. [PMID: 37906839 DOI: 10.1146/annurev-animal-021122-092239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2023]
Abstract
Bird migration has long been a subject of fascination for humankind and is a behavior that is both intricate and multifaceted. In recent years, advances in technology, particularly in the fields of genomics and animal tracking, have enabled significant progress in our understanding of this phenomenon. In this review, we provide an overview of the latest advancements in the genetics of bird migration, with a particular focus on genomics, and examine various factors that contribute to the evolution of this behavior, including climate change. Integration of research from the fields of genomics, ecology, and evolution can enhance our comprehension of the complex mechanisms involved in bird migration and inform conservation efforts in a rapidly changing world.
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Affiliation(s)
- Zhongru Gu
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China;
- Cardiff University-Institute of Zoology Joint Laboratory for Biocomplexity Research, Chinese Academy of Sciences, Beijing, China
| | - Andrew Dixon
- Mohamed Bin Zayed Raptor Conservation Fund, Abu Dhabi, United Arab Emirates
| | - Xiangjiang Zhan
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China;
- Cardiff University-Institute of Zoology Joint Laboratory for Biocomplexity Research, Chinese Academy of Sciences, Beijing, China
- Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, China
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3
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Cohen JM, Fink D, Zuckerberg B. Spatial and seasonal variation in thermal sensitivity within North American bird species. Proc Biol Sci 2023; 290:20231398. [PMID: 37935364 PMCID: PMC10645114 DOI: 10.1098/rspb.2023.1398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Accepted: 10/09/2023] [Indexed: 11/09/2023] Open
Abstract
Responses of wildlife to climate change are typically quantified at the species level, but physiological evidence suggests significant intraspecific variation in thermal sensitivity given adaptation to local environments and plasticity required to adjust to seasonal environments. Spatial and temporal variation in thermal responses may carry important implications for climate change vulnerability; for instance, sensitivity to extreme weather may increase in specific regions or seasons. Here, we leverage high-resolution observational data from eBird to understand regional and seasonal variation in thermal sensitivity for 21 bird species. Across their ranges, most birds demonstrated regional and seasonal variation in both thermal peak and range, or the temperature and range of temperatures when observations peaked. Some birds demonstrated constant thermal peaks or ranges across their geographical distributions, while others varied according to local and current environmental conditions. Across species, birds typically demonstrated either geographical or seasonal adaptation to climate. Local adaptation and phenotypic plasticity are likely important but neglected aspects of organismal responses to climate change.
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Affiliation(s)
- Jeremy M. Cohen
- Department of Forest and Wildlife Ecology, University of Wisconsin, Madison, WI, 53706, USA
- Department of Ecology and Evolutionary Biology, and
- Center for Biodiversity and Global Change, Yale University, New Haven, CT, 06520, USA
| | - Daniel Fink
- Cornell Lab of Ornithology, Cornell University, Ithaca, NY, 14850, USA
| | - Benjamin Zuckerberg
- Department of Forest and Wildlife Ecology, University of Wisconsin, Madison, WI, 53706, USA
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4
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Gregory KA, Francesiaz C, Jiguet F, Besnard A. A synthesis of recent tools and perspectives in migratory connectivity studies. MOVEMENT ECOLOGY 2023; 11:69. [PMID: 37891684 PMCID: PMC10605477 DOI: 10.1186/s40462-023-00388-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2022] [Accepted: 04/17/2023] [Indexed: 10/29/2023]
Abstract
Migration movements connect breeding and non-breeding bird populations over the year. Such links, referred to as migratory connectivity, have important implications for migratory population dynamics as they dictate the consequences of localised events for the whole population network. This calls for concerted efforts to understand migration processes for large-scale conservation. Over the last 20 years, the toolbox to investigate connectivity patterns has expanded and studies now consider migratory connectivity over a broader range of species and contexts. Here, we summarise recent developments in analysing migratory connectivity, focusing on strategies and challenges to pooling various types of data to both optimise and broaden the scope of connectivity studies. We find that the different approaches used to investigate migratory connectivity still have complementary strengths and weaknesses, whether in terms of cost, spatial and temporal resolution, or challenges in obtaining large sample sizes or connectivity estimates. Certain recent developments offer particularly promising prospects: robust quantitative models for banding data, improved precision of geolocators and accessibility of telemetry tracking systems, and increasingly precise probabilistic assignments based on genomic markers or large-scale isoscapes. In parallel, studies have proposed various ways to combine the information of different datasets, from simply comparing the connectivity patterns they draw to formally integrating their analyses. Such data combinations have proven to be more accurate in estimating connectivity patterns, particularly for integrated approaches that offer promising flexibility. Given the diversity of available tools, future studies would benefit from a rigorous comparative evaluation of the different methodologies to guide data collection to complete migration atlases: where and when should data be collected during the migratory cycle to best describe connectivity patterns? Which data are most favourable to combine, and under what conditions? Are there methods for combining data that are better than others? Can combination methods be improved by adjusting the contribution of the various data in the models? How can we fully integrate connectivity with demographic and environmental data? Data integration shows strong potential to deepen our understanding of migratory connectivity as a dynamic ecological process, especially if the gaps can be bridged between connectivity, population and environmental models.
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Affiliation(s)
- Killian A Gregory
- Master de Biologie, École Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Université de Lyon, Lyon, France.
- CESCO, MNHN-CNRS-Sorbonne Université, Paris, France.
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France.
| | | | | | - Aurélien Besnard
- CEFE, Univ Montpellier, CNRS, EPHE-PSL University, IRD, Montpellier, France
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5
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Turbek SP, Funk WC, Ruegg KC. Where to draw the line? Expanding the delineation of conservation units to highly mobile taxa. J Hered 2023; 114:300-311. [PMID: 36815497 DOI: 10.1093/jhered/esad011] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Accepted: 02/21/2023] [Indexed: 02/24/2023] Open
Abstract
Conservation units (CUs) are an essential tool for maximizing evolutionary potential and prioritizing areas across a species' range for protection when implementing conservation and management measures. However, current workflows for identifying CUs on the basis of neutral and adaptive genomic variation largely ignore information contained in patterns of isolation by distance (IBD), frequently the primary signal of population structure in highly mobile taxa, such as birds, bats, and marine organisms with pelagic larval stages. While individuals located on either end of a species' distribution may exhibit clear genetic, phenotypic, and ecological differences, IBD produces subtle changes in allele frequencies across space, making it difficult to draw clear boundaries for conservation purposes in the absence of discrete population structure. Here, we highlight potential pitfalls that arise when applying common methods for delineating CUs to continuously distributed organisms and review existing methods for detecting subtle breakpoints in patterns of IBD that can indicate barriers to gene flow in highly mobile taxa. In addition, we propose a new framework for identifying CUs in all organisms, including those characterized by continuous genomic differentiation, and suggest several possible ways to harness the information contained in patterns of IBD to guide conservation and management decisions.
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Affiliation(s)
- Sheela P Turbek
- Department of Biology, Colorado State University, Fort Collins, CO, United States
| | - W Chris Funk
- Department of Biology, Colorado State University, Fort Collins, CO, United States
| | - Kristen C Ruegg
- Department of Biology, Colorado State University, Fort Collins, CO, United States
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6
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Callaghan CT, Palacio FX, Benedetti Y, Morelli F, Bowler DE. Large-scale spatial variability in urban tolerance of birds. J Anim Ecol 2023; 92:403-416. [PMID: 36477754 DOI: 10.1111/1365-2656.13862] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 11/28/2022] [Indexed: 12/13/2022]
Abstract
Quantifying intraspecific and interspecific trait variability is critical to our understanding of biogeography, ecology and conservation. But quantifying such variability and understanding the importance of intraspecific and interspecific variability remain challenging. This is especially true of large geographic scales as this is where the differences between intraspecific and interspecific variability are likely to be greatest. Our goal is to address this research gap using broad-scale citizen science data to quantify intraspecific variability and compare it with interspecific variability, using the example of bird responses to urbanization across the continental United States. Using more than 100 million observations, we quantified urban tolerance for 338 species within randomly sampled spatial regions and then calculated the standard deviation of each species' urban tolerance. We found that species' spatial variability in urban tolerance (i.e. standard deviation) was largely explained by the variability of urban cover throughout a species' range (R2 = 0.70). Variability in urban tolerance was greater in species that were more tolerant of urban cover (i.e. the average urban tolerance throughout their range), suggesting that generalist life histories are better suited to adapt to novel anthropogenic environments. Overall, species differences explained most of the variability in urban tolerance across spatial regions. Together, our results indicate that (1) intraspecific variability is largely predicted by local environmental variability in urban cover at a large spatial scale and (2) interspecific variability is greater than intraspecific variability, supporting the common use of mean values (i.e. collapsing observations across a species' range) when assessing species-environment relationships. Further studies, across different taxa, traits and species-environment relationships are needed to test the role of intraspecific variability, but nevertheless, we recommend that when possible, ecologists should avoid using discrete categories to classify species in how they respond to the environment.
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Affiliation(s)
- Corey T Callaghan
- Department of Wildlife Ecology and Conservation, Fort Lauderdale Research and Education Center, University of Florida, Davie, Florida, USA.,German Centre for Integrative Biodiversity Research (iDiv) Halle - Jena - Leipzig, Leipzig, Germany.,Institute of Biology, Martin Luther University Halle - Wittenberg, Halle (Saale), Germany.,Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Prague, Czech Republic
| | - Facundo X Palacio
- Facultad de Ciencias Naturales y Museo, Universidad Nacional de la Plata, La Plata, Argentina
| | - Yanina Benedetti
- Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Prague, Czech Republic
| | - Federico Morelli
- Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Prague, Czech Republic.,Institute of Biological Sciences, University of Zielona Góra, Zielona Góra, Poland
| | - Diana E Bowler
- German Centre for Integrative Biodiversity Research (iDiv) Halle - Jena - Leipzig, Leipzig, Germany.,Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany.,Helmoholtz Center for Environmental Research - UFZ, Department of Ecosystem Services, Leipzig, Germany
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7
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Spence AR, LeWinter H, Tingley MW. Anna's hummingbird (Calypte anna) physiological response to novel thermal and hypoxic conditions at high elevations. J Exp Biol 2022; 225:275376. [PMID: 35617822 DOI: 10.1242/jeb.243294] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Accepted: 03/09/2022] [Indexed: 12/19/2022]
Abstract
Many species have not tracked their thermal niches upslope as predicted by climate change, potentially because higher elevations are associated with abiotic challenges beyond temperature. To better predict whether organisms can continue to move upslope with rising temperatures, we need to understand their physiological performance when subjected to novel high-elevation conditions. Here, we captured Anna's hummingbirds - a species expanding their elevational distribution in concordance with rising temperatures - from across their current elevational distribution and tested their physiological response to novel abiotic conditions. First, at a central aviary within their current elevational range, we measured hovering metabolic rate to assess their response to oxygen conditions and torpor use to assess their response to thermal conditions. Second, we transported the hummingbirds to a location 1200 m above their current elevational range limit to test for an acute response to novel oxygen and thermal conditions. Hummingbirds exhibited lower hovering metabolic rates above their current elevational range limit, suggesting lower oxygen availability may reduce performance after an acute exposure. Alternatively, hummingbirds showed a facultative response to thermal conditions by using torpor more frequently and for longer. Finally, post-experimental dissection found that hummingbirds originating from higher elevations within their range had larger hearts, a potential plastic response to hypoxic environments. Overall, our results suggest lower oxygen availability and low air pressure may be difficult challenges to overcome for hummingbirds shifting upslope as a consequence of rising temperatures, especially if there is little to no long-term acclimatization. Future studies should investigate how chronic exposure and acclimatization to novel conditions, as opposed to acute experiments, may result in alternative outcomes that help organisms better respond to abiotic challenges associated with climate-induced range shifts.
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Affiliation(s)
- Austin R Spence
- Ecology & Evolutionary Biology, University of Connecticut, 75 N. Eagleville Road, Unit 3043, Storrs, CT 06269, USA
| | - Hannah LeWinter
- Wildlife Conservation & Management, Humboldt State University, 1 Harpst St. Arcata, CA 95521, USA
| | - Morgan W Tingley
- Ecology & Evolutionary Biology, University of California - Los Angeles, 621 Charles E. Young Dr. S. #951606, Los Angeles, CA 90095, USA
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8
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Abstract
Restriction enzymes have been one of the primary tools in the population genetics toolkit for 50 years, being coupled with each new generation of technology to provide a more detailed view into the genetics of natural populations. Restriction site-Associated DNA protocols, which joined enzymes with short-read sequencing technology, have democratized the field of population genomics, providing a means to assay the underlying alleles in scores of populations. More than 10 years on, the technique has been widely applied across the tree of life and served as the basis for many different analysis techniques. Here, we provide a detailed protocol to conduct a RAD analysis from experimental design to de novo analysis-including parameter optimization-as well as reference-based analysis, all in Stacks version 2, which is designed to work with paired-end reads to assemble RAD loci up to 1000 nucleotides in length. The protocol focuses on major points of friction in the molecular approaches and downstream analysis, with special attention given to validating experimental analyses. Finally, the protocol provides several points of departure for further analysis.
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Affiliation(s)
- Angel G Rivera-Colón
- Department of Evolution, Ecology, and Behavior, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Julian Catchen
- Department of Evolution, Ecology, and Behavior, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
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9
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Climate Change Impacts on Himalayan Biodiversity: Evidence-Based Perception and Current Approaches to Evaluate Threats Under Climate Change. J Indian Inst Sci 2021. [DOI: 10.1007/s41745-021-00237-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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