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Ndah FA, Michelsen A, Rinnan R, Maljanen M, Mikkonen S, Kivimäenpää M. Impact of three decades of warming, increased nutrient availability, and increased cloudiness on the fluxes of greenhouse gases and biogenic volatile organic compounds in a subarctic tundra heath. GLOBAL CHANGE BIOLOGY 2024; 30:e17416. [PMID: 38994730 DOI: 10.1111/gcb.17416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Revised: 06/24/2024] [Accepted: 06/26/2024] [Indexed: 07/13/2024]
Abstract
Climate change is exposing subarctic ecosystems to higher temperatures, increased nutrient availability, and increasing cloud cover. In this study, we assessed how these factors affect the fluxes of greenhouse gases (GHGs) (i.e., methane (CH4), nitrous oxide (N2O), and carbon dioxide (CO2)), and biogenic volatile organic compounds (BVOCs) in a subarctic mesic heath subjected to 34 years of climate change related manipulations of temperature, nutrient availability, and light. GHGs were sampled from static chambers and gases analyzed with gas chromatograph. BVOCs were measured using the push-pull method and gases analyzed with chromatography-mass spectrometry. The soil temperature and moisture content in the warmed and shaded plots did not differ significantly from that in the controls during GHG and BVOC measurements. Also, the enclosure temperatures during BVOC measurements in the warmed and shaded plots did not differ significantly from temperatures in the controls. Hence, this allowed for assessment of long-term effects of the climate treatment manipulations without interference of temperature and moisture differences at the time of measurements. Warming enhanced CH4 uptake and the emissions of CO2, N2O, and isoprene. Increased nutrient availability increased the emissions of CO2 and N2O but caused no significant changes in the fluxes of CH4 and BVOCs. Shading (simulating increased cloudiness) enhanced CH4 uptake but caused no significant changes in the fluxes of other gases compared to the controls. The results show that climate warming and increased cloudiness will enhance CH4 sink strength of subarctic mesic heath ecosystems, providing negative climate feedback, while climate warming and enhanced nutrient availability will provide positive climate feedback through increased emissions of CO2 and N2O. Climate warming will also indirectly, through vegetation changes, increase the amount of carbon lost as isoprene from subarctic ecosystems.
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Affiliation(s)
- Flobert A Ndah
- Department of Environmental and Biological Sciences, University of Eastern Finland, Kuopio, Finland
| | - Anders Michelsen
- Terrestrial Ecology Section, Department of Biology, University of Copenhagen, Copenhagen Ø, Denmark
| | - Riikka Rinnan
- Terrestrial Ecology Section, Department of Biology, University of Copenhagen, Copenhagen Ø, Denmark
- Department of Biology, Center for Volatile Interactions (VOLT), University of Copenhagen, Copenhagen Ø, Denmark
| | - Marja Maljanen
- Department of Environmental and Biological Sciences, University of Eastern Finland, Kuopio, Finland
| | - Santtu Mikkonen
- Department of Environmental and Biological Sciences, University of Eastern Finland, Kuopio, Finland
- Department of Technical Physics, University of Eastern Finland, Kuopio, Finland
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Habteweld A, Kantor M, Kantor C, Handoo Z. Understanding the dynamic interactions of root-knot nematodes and their host: role of plant growth promoting bacteria and abiotic factors. FRONTIERS IN PLANT SCIENCE 2024; 15:1377453. [PMID: 38745927 PMCID: PMC11091308 DOI: 10.3389/fpls.2024.1377453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Accepted: 04/11/2024] [Indexed: 05/16/2024]
Abstract
Root-knot nematodes (Meloidogyne spp., RKN) are among the most destructive endoparasitic nematodes worldwide, often leading to a reduction of crop growth and yield. Insights into the dynamics of host-RKN interactions, especially in varied biotic and abiotic environments, could be pivotal in devising novel RKN mitigation measures. Plant growth-promoting bacteria (PGPB) involves different plant growth-enhancing activities such as biofertilization, pathogen suppression, and induction of systemic resistance. We summarized the up-to-date knowledge on the role of PGPB and abiotic factors such as soil pH, texture, structure, moisture, etc. in modulating RKN-host interactions. RKN are directly or indirectly affected by different PGPB, abiotic factors interplay in the interactions, and host responses to RKN infection. We highlighted the tripartite (host-RKN-PGPB) phenomenon with respect to (i) PGPB direct and indirect effect on RKN-host interactions; (ii) host influence in the selection and enrichment of PGPB in the rhizosphere; (iii) how soil microbes enhance RKN parasitism; (iv) influence of host in RKN-PGPB interactions, and (v) the role of abiotic factors in modulating the tripartite interactions. Furthermore, we discussed how different agricultural practices alter the interactions. Finally, we emphasized the importance of incorporating the knowledge of tripartite interactions in the integrated RKN management strategies.
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Affiliation(s)
- Alemayehu Habteweld
- Mycology and Nematology Genetic Diversity and Biology Laboratory, USDA, ARS, Northeast Area, Beltsville, MD, United States
| | - Mihail Kantor
- Plant Pathology and Environmental Microbiology Department, Pennsylvania State University, University Park, PA, United States
| | - Camelia Kantor
- Huck Institutes of the Life Sciences, Pennsylvania State University, State College, PA, United States
| | - Zafar Handoo
- Mycology and Nematology Genetic Diversity and Biology Laboratory, USDA, ARS, Northeast Area, Beltsville, MD, United States
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Wang T, Kalalian C, Fillion D, Perrier S, Chen J, Domine F, Zhang L, George C. Sunlight Induces the Production of Atmospheric Volatile Organic Compounds (VOCs) from Thermokarst Ponds. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:17363-17373. [PMID: 37903215 DOI: 10.1021/acs.est.3c03303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/01/2023]
Abstract
Ground subsidence caused by permafrost thawing causes the formation of thermokarst ponds, where organic compounds from eroding permafrost accumulate. We photolyzed water samples from two such ponds in Northern Quebec and discovered the emission of volatile organic compounds (VOCs) using mass spectrometry. One pond near peat-covered permafrost mounds was organic-rich, while the other near sandy mounds was organic-poor. Compounds up to C10 were detected, comprising the atoms of O, N, and S. The main compounds were methanol, acetaldehyde, and acetone. Hourly VOC fluxes under actinic fluxes similar to local solar fluxes might reach up to 1.7 nmol C m-2 s-1. Unexpectedly, the fluxes of VOCs from the organic-poor pond were greater than those from the organic-rich pond. We suggest that different segregations of organics at the air/water interface may partly explain this observation. This study indicates that sunlit thermokarst ponds are a significant source of atmospheric VOCs, which may affect the environment and climate via ozone and aerosol formation. Further work is required for understanding the relationship between the pond's organic composition and VOC emission fluxes.
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Affiliation(s)
- Tao Wang
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, IRCELYON, 69626 Villeurbanne, France
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, China
| | - Carmen Kalalian
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, IRCELYON, 69626 Villeurbanne, France
| | - Daniel Fillion
- Takuvik Joint International Laboratory, Université Laval (Canada) and CNRS-INSU (France), Pavillon Alexandre-Vachon, Québec G1V 0A6, Canada
- Centre d'Études Nordiques, Université Laval, Pavillon Abitibi-Price, Québec G1 V 0A6, Canada
- Department of Chemistry, Université Laval, Pavillon Alexandre-Vachon, Québec G1 V 0A6, Canada
| | - Sébastien Perrier
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, IRCELYON, 69626 Villeurbanne, France
| | - Jianmin Chen
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, China
| | - Florent Domine
- Takuvik Joint International Laboratory, Université Laval (Canada) and CNRS-INSU (France), Pavillon Alexandre-Vachon, Québec G1V 0A6, Canada
- Centre d'Études Nordiques, Université Laval, Pavillon Abitibi-Price, Québec G1 V 0A6, Canada
- Department of Chemistry, Université Laval, Pavillon Alexandre-Vachon, Québec G1 V 0A6, Canada
| | - Liwu Zhang
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, China
| | - Christian George
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, IRCELYON, 69626 Villeurbanne, France
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Qin Y, Wang N, Zheng L, Li Q, Wang L, Xu X, Yin X. Study of Archaeal Diversity in the Arctic Meltwater Lake Region. BIOLOGY 2023; 12:1023. [PMID: 37508452 PMCID: PMC10376139 DOI: 10.3390/biology12071023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 07/04/2023] [Accepted: 07/16/2023] [Indexed: 07/30/2023]
Abstract
Two typical lakes formed from meltwater in the Ny-Ålesund area were taken as the study subjects in 2018. To investigate the archaeal community compositions of the two lakes, 16S rRNA genes from soil samples from the intertidal and subtidal zones of the two lakes were sequenced with high throughput. At the phylum level, the intertidal zone was dominated by Crenarchaeota and the subtidal zone was dominated by Halobacter; at the genus level, the intertidal zone was dominated by Nitrososphaeraceae_unclassified and Candidatus_Nitrocosmicus, while the subtidal zone was dominated by Methanoregula. The soil physicochemical factors pH, moisture content (MC), total organic carbon (TOC), total organic nitrogen (TON), nitrite nitrogen (NO2--N), and nitrate nitrogen (NO3--N) were significantly different in the intertidal and subtidal zones of the lake. By redundancy analysis, the results indicated that NH4+-N, SiO32--Si, MC, NO3--N, and NO2--N have had highly significant effects on the archaeal diversity and distribution. A weighted gene co-expression network analysis (WGCNA) was used to search for hub archaea associated with physicochemical factors. The results suggested that these physicochemical factors play important roles in the diversity and structure of the archaeal community at different sites by altering the abundance of certain hub archaea. In addition, Woesearchaeales was found to be the hub archaea genus at every site.
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Affiliation(s)
- Yiling Qin
- First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China
| | - Nengfei Wang
- School of Chemistry and Chemical Engineering, Linyi University, Linyi 276000, China
| | - Li Zheng
- First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China
| | - Qinxin Li
- College of Chemistry and Chemical Engineering, Qingdao University, Qingdao 266071, China
| | - Long Wang
- Department of Bioengineering, College of Marine Sciences and Biological Engineering, Qingdao University of Science & Technology, Qingdao 266042, China
| | - Xiaoyu Xu
- School of Chemistry and Chemical Engineering, Linyi University, Linyi 276000, China
| | - Xiaofei Yin
- First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China
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Doting EL, Davie-Martin CL, Johansen A, Benning LG, Tranter M, Rinnan R, Anesio AM. Greenland Ice Sheet Surfaces Colonized by Microbial Communities Emit Volatile Organic Compounds. Front Microbiol 2022; 13:886293. [PMID: 35747370 PMCID: PMC9211068 DOI: 10.3389/fmicb.2022.886293] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 04/25/2022] [Indexed: 11/13/2022] Open
Abstract
Volatile organic compounds (VOCs) are emitted by organisms for a range of physiological and ecological reasons. They play an important role in biosphere–atmosphere interactions and contribute to the formation of atmospheric secondary aerosols. The Greenland ice sheet is home to a variety of microbial communities, including highly abundant glacier ice algae, yet nothing is known about the VOCs emitted by glacial communities. For the first time, we present VOC emissions from supraglacial habitats colonized by active microbial communities on the southern Greenland ice sheet during July 2020. Emissions of C5–C30 compounds from bare ice, cryoconite holes, and red snow were collected using a push–pull chamber active sampling system. A total of 92 compounds were detected, yielding mean total VOC emission rates of 3.97 ± 0.70 μg m–2 h–1 from bare ice surfaces (n = 31), 1.63 ± 0.13 μg m–2 h–1 from cryoconite holes (n = 4), and 0.92 ± 0.08 μg m–2 h–1 from red snow (n = 2). No correlations were found between VOC emissions and ice surface algal counts, but a weak positive correlation (r = 0.43, p = 0.015, n = 31) between VOC emission rates from bare ice surfaces and incoming shortwave radiation was found. We propose that this may be due to the stress that high solar irradiance causes in bare ice microbial communities. Acetophenone, benzaldehyde, and phenylmaleic anhydride, all of which have reported antifungal activity, accounted for 51.1 ± 11.7% of emissions from bare ice surfaces, indicating a potential defense strategy against fungal infections. Greenland ice sheet microbial habitats are, hence, potential sources of VOCs that may play a role in supraglacial microbial interactions, as well as local atmospheric chemistry, and merit future research efforts.
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Affiliation(s)
- Eva L. Doting
- Department of Environmental Science, iClimate, Aarhus University, Roskilde, Denmark
- *Correspondence: Eva L. Doting,
| | - Cleo L. Davie-Martin
- Terrestrial Ecology Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Anders Johansen
- Department of Environmental Science, iClimate, Aarhus University, Roskilde, Denmark
| | - Liane G. Benning
- Interface Geochemistry, German Research Centre for Geosciences, GFZ Potsdam, Potsdam, Germany
- Department of Earth Sciences, Freie Universität Berlin, Berlin, Germany
| | - Martyn Tranter
- Department of Environmental Science, iClimate, Aarhus University, Roskilde, Denmark
| | - Riikka Rinnan
- Terrestrial Ecology Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Alexandre M. Anesio
- Department of Environmental Science, iClimate, Aarhus University, Roskilde, Denmark
- Alexandre M. Anesio,
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Cai M, An C, Guy C, Lu C, Mafakheri F. Assessing the regional biogenic methanol emission from spring wheat during the growing season: A Canadian case study. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 287:117602. [PMID: 34182392 DOI: 10.1016/j.envpol.2021.117602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 06/03/2021] [Accepted: 06/13/2021] [Indexed: 06/13/2023]
Abstract
As a volatile organic compound existing in the atmosphere, methanol plays a key role in atmospheric chemistry due to its comparatively high abundance and long lifetime. Croplands are a significant source of biogenic methanol, but there is a lack of systematic assessment for the production and emission of methanol from crops in various phases. In this study, methanol emissions from spring wheat during the growing period were estimated using a developed emission model. The temporal and spatial variations of methanol emissions of spring wheat in a Canadian province were investigated. The averaged methanol emission of spring wheat is found to be 37.94 ± 7.5 μg·m-2·h-1, increasing from north to south and exhibiting phenological peak to valley characteristics. Moreover, cold crop districts are projected to be with higher increase in air temperature and consequent methanol emissions during 2020-2099. Furthermore, the seasonality of methanol emissions is found to be positively correlated to concentrations of CO, filterable particulate matter, and PM10 but negatively related to NO2 and O3. The uncertainty and sensitivity analysis results suggest that methanol emissions show a Gamma probabilistic distribution, and growth length, air temperature, solar radiation and leafage are the most important influencing variables. In most cases, methanol emissions increase with air temperature in the range of 3-35 °C while the excessive temperature may result in decreased methanol emissions because of inactivated enzyme activity or increased instant methanol emissions due to heat injury. Notably, induced emission might be the major source of biogenic methanol of mature leaves. The results of this study can be used to develop appropriate strategies for regional emission management of cropping systems.
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Affiliation(s)
- Mengfan Cai
- Department of Building, Civil and Environmental Engineering, Faculty of Engineering and Computer Science, Concordia University, Montreal, QC H3G 1M8, Canada
| | - Chunjiang An
- Department of Building, Civil and Environmental Engineering, Faculty of Engineering and Computer Science, Concordia University, Montreal, QC H3G 1M8, Canada.
| | - Christophe Guy
- Department of Chemical and Materials Engineering, Concordia University, Montreal, QC H3G 1M8, Canada
| | - Chen Lu
- Institute for Energy, Environment and Sustainable Communities, University of Regina, Regina, SK S4S 0A2, Canada
| | - Fereshteh Mafakheri
- Concordia Institute for Information Systems Engineering, Concordia University, Montreal, H3G 1M8, Canada
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Naamala J, Smith DL. Microbial Derived Compounds, a Step Toward Enhancing Microbial Inoculants Technology for Sustainable Agriculture. Front Microbiol 2021; 12:634807. [PMID: 33679668 PMCID: PMC7930237 DOI: 10.3389/fmicb.2021.634807] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2020] [Accepted: 01/29/2021] [Indexed: 11/16/2022] Open
Abstract
Sustainable agriculture remains a focus for many researchers, in an effort to minimize environmental degradation and climate change. The use of plant growth promoting microorganisms (PGPM) is a hopeful approach for enhancing plant growth and yield. However, the technology faces a number of challenges, especially inconsistencies in the field. The discovery, that microbial derived compounds can independently enhance plant growth, could be a step toward minimizing shortfalls related to PGPM technology. This has led many researchers to engage in research activities involving such compounds. So far, the findings are promising as compounds have been reported to enhance plant growth under stressed and non-stressed conditions in a wide range of plant species. This review compiles current knowledge on microbial derived compounds, taking a reader through a summarized protocol of their isolation and identification, their relevance in present agricultural trends, current use and limitations, with a view to giving the reader a picture of where the technology has come from, and an insight into where it could head, with some suggestions regarding the probable best ways forward.
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Affiliation(s)
- Judith Naamala
- Smith Laboratory, Department of Plant Science, McGill University, Quebec, QC, Canada
| | - Donald L Smith
- Smith Laboratory, Department of Plant Science, McGill University, Quebec, QC, Canada
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Adedeji AA, Babalola OO. Secondary metabolites as plant defensive strategy: a large role for small molecules in the near root region. PLANTA 2020; 252:61. [PMID: 32965531 DOI: 10.1007/s00425-020-03468-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Accepted: 09/12/2020] [Indexed: 05/20/2023]
Abstract
The roles of plant roots are not merely limited to the provision of mechanical support, nutrients and water, but also include more specific roles, such as the capacity to secrete diverse chemical substances. These metabolites are actively secreted in the near root and play specific and significant functions in plant defense and communication. In this review, we detail the various preventive roles of these powerful substances in the rhizosphere with a perspective as to how plants recruit microbes as a preventive measure against other pathogenic microbes, also, briefly about how the rhizosphere can repel insect pests, and how these chemical substances alter microbial dynamics and enhance symbiotic relationships. We also highlight the need for more research in this area to detail the mode of action and quantification of these compounds in the environment and their roles in some important biological processes in microorganisms and plants.
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Affiliation(s)
- Atilade Adedayo Adedeji
- Food Security and Safety Niche Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho, 2735, South Africa
- Department of Biochemistry and Microbiology, School of Environmental and Biological Sciences, Rutgers University, New Brunswick, NJ, USA
| | - Olubukola Oluranti Babalola
- Food Security and Safety Niche Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho, 2735, South Africa.
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de Boer W, Li X, Meisner A, Garbeva P. Pathogen suppression by microbial volatile organic compounds in soils. FEMS Microbiol Ecol 2020; 95:5527321. [PMID: 31265069 DOI: 10.1093/femsec/fiz105] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2019] [Accepted: 06/30/2019] [Indexed: 12/15/2022] Open
Abstract
There is increasing evidence that microbial volatile organic compounds (mVOCs) play an important role in interactions between microbes in soils. In this minireview, we zoom in on the possible role of mVOCs in the suppression of plant-pathogenic soil fungi. In particular, we have screened the literature to see what the actual evidence is that mVOCs in soil atmospheres can contribute to pathogen suppression. Furthermore, we discuss biotic and abiotic factors that influence the production of suppressive mVOCs in soils. Since microbes producing mVOCs in soils are part of microbial communities, community ecological aspects such as diversity and assembly play an important role in the composition of produced mVOC blends. These aspects have not received much attention so far. In addition, the fluctuating abiotic conditions in soils, such as changing moisture contents, influence mVOC production and activity. The biotic and abiotic complexity of the soil environment hampers the extrapolation of the production and suppressing activity of mVOCs by microbial isolates on artificial growth media. Yet, several pathogen suppressive mVOCs produced by pure cultures do also occur in soil atmospheres. Therefore, an integration of lab and field studies on the production of mVOCs is needed to understand and predict the composition and dynamics of mVOCs in soil atmospheres. This knowledge, together with the knowledge of the chemistry and physical behaviour of mVOCs in soils, forms the basis for the development of sustainable management strategies to enhance the natural control of soil-borne pathogens with mVOCs. Possibilities for the mVOC-based control of soil-borne pathogens are discussed.
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Affiliation(s)
- Wietse de Boer
- Department of Microbial Ecology, Netherlands Institute of Ecology, NIOO-KNAW, Droevendaalsesteeg 10, 6708PB Wageningen, The Netherlands.,Soil Biology Group, Wageningen University, Droevendaalsesteeg 3, 6708PB Wageningen, The Netherlands
| | - Xiaogang Li
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Longpan Road 159, 210037 Nanjing, China
| | - Annelein Meisner
- Department of Microbial Ecology, Netherlands Institute of Ecology, NIOO-KNAW, Droevendaalsesteeg 10, 6708PB Wageningen, The Netherlands.,Microbial Ecology, Department of Biology, Lund University, Ecology Building, Sölvegatan 37, SE-22363 Lund, Sweden
| | - Paolina Garbeva
- Department of Microbial Ecology, Netherlands Institute of Ecology, NIOO-KNAW, Droevendaalsesteeg 10, 6708PB Wageningen, The Netherlands
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Zhou L, Zhou Y, Yao X, Cai J, Liu X, Tang X, Zhang Y, Jang KS, Jeppesen E. Decreasing diversity of rare bacterial subcommunities relates to dissolved organic matter along permafrost thawing gradients. ENVIRONMENT INTERNATIONAL 2020; 134:105330. [PMID: 31759274 DOI: 10.1016/j.envint.2019.105330] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 11/10/2019] [Accepted: 11/12/2019] [Indexed: 05/28/2023]
Abstract
Dissolved organic matter (DOM) released from permafrost thaw greatly influences the biogeochemical cycles of, among others, downstream carbon, nitrogen and phosphorus cycles; yet, knowledge of the linkages between bacterial communities with permafrost DOM heterogeneity is limited. Here, we aim at unravelling the responses of bacterial diversities and metabolic profiles to DOM quantity and composition across permafrost thawing gradients by coupling an extensive field investigation with bio-incubation experiments. Richness, evenness and dissimilarities of the whole and rare communities decreased from thermokarst pits to headstreams and to downstream rivers. The assemblages of the abundant subcommunities were mainly determined by ecological drift-driven stochastic processes. Both the optical and the molecular composition of DOM were significantly related to the changes of the whole (rare) bacterial communities (Mantel's correlation > 0.5, p < 0.01). Diversity indices of the whole and rare communities decreased with decreasing relative abundance of tannins, condensed aromatics and more aromatic and oxidized lignins as well as with decreased dissolved organic carbon and intensities of all fluorescence components. Laboratory DOM bio-incubation experiments further confirmed microbial consumption of more aromatic and oxidized compounds as well as decreasing metabolic diversities in terms of microbial degradation and production along permafrost thawing gradients. Our findings suggest that changes in the sources of permafrost-derived DOM induced by global warming can have different influences on the diversity and metabolism of bacterial communities and thus on permafrost carbon climate feedbacks along permafrost thawing gradients.
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Affiliation(s)
- Lei Zhou
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yongqiang Zhou
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaolong Yao
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jian Cai
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xin Liu
- Shanghai Municipal Engineering Design Institute (Group) CO., LTD, Shanghai 200092, China
| | - Xiangming Tang
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yunlin Zhang
- Taihu Laboratory for Lake Ecosystem Research, State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Kyoung-Soon Jang
- Biomedical Omics Group, Korea Basic Science Institute, Cheongju 28119, South Korea
| | - Erik Jeppesen
- Department of Bioscience and Arctic Research Centre, Aarhus University, DK-8600 Silkeborg, Denmark; Sino-Danish Centre for Education and Research, Beijing 100190, China; Limnology Laboratory and EKOSAM, Department of Biological Sciences, Middle East Technical University, Ankara, Turkey
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