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Purcell AM, Dijkstra P, Hungate BA, McMillen K, Schwartz E, van Gestel N. Rapid growth rate responses of terrestrial bacteria to field warming on the Antarctic Peninsula. THE ISME JOURNAL 2023; 17:2290-2302. [PMID: 37872274 PMCID: PMC10689830 DOI: 10.1038/s41396-023-01536-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 10/05/2023] [Accepted: 10/09/2023] [Indexed: 10/25/2023]
Abstract
Ice-free terrestrial environments of the western Antarctic Peninsula are expanding and subject to colonization by new microorganisms and plants, which control biogeochemical cycling. Measuring growth rates of microbial populations and ecosystem carbon flux is critical for understanding how terrestrial ecosystems in Antarctica will respond to future warming. We implemented a field warming experiment in early (bare soil; +2 °C) and late (peat moss-dominated; +1.2 °C) successional glacier forefield sites on the western Antarctica Peninsula. We used quantitative stable isotope probing with H218O using intact cores in situ to determine growth rate responses of bacterial taxa to short-term (1 month) warming. Warming increased the growth rates of bacterial communities at both sites, even doubling the number of taxa exhibiting significant growth at the early site. Growth responses varied among taxa. Despite that warming induced a similar response for bacterial relative growth rates overall, the warming effect on ecosystem carbon fluxes was stronger at the early successional site-likely driven by increased activity of autotrophs which switched the ecosystem from a carbon source to a carbon sink. At the late-successional site, warming caused a significant increase in growth rate of many Alphaproteobacteria, but a weaker and opposite gross ecosystem productivity response that decreased the carbon sink-indicating that the carbon flux rates were driven more strongly by the plant communities. Such changes to bacterial growth and ecosystem carbon cycling suggest that the terrestrial Antarctic Peninsula can respond fast to increases in temperature, which can have repercussions for long-term elemental cycling and carbon storage.
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Affiliation(s)
- Alicia M Purcell
- Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA.
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA.
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA.
| | - Paul Dijkstra
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
| | - Bruce A Hungate
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
| | - Kelly McMillen
- Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA
| | - Egbert Schwartz
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, USA
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
| | - Natasja van Gestel
- Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA
- TTU Climate Center, Texas Tech University, Lubbock, TX, USA
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2
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Sun S, Ma B, Wang G, Tan X. Linking microbial biogeochemical cycling genes to the rhizosphere of pioneering plants in a glacier foreland. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 872:161944. [PMID: 36737018 DOI: 10.1016/j.scitotenv.2023.161944] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Revised: 01/27/2023] [Accepted: 01/27/2023] [Indexed: 06/18/2023]
Abstract
Glacier retreat raises global concerns but brings about the moment to study soil and ecosystem development. In nutrient-limited glacier forelands, the adaptability of pioneering plant and microbial species is facilitated by their interactions, including rhizosphere effects, but the details of this adaptability are not yet understood. In the rhizosphere of five pioneering plants, we comprehensively deciphered the microbial taxonomic and functional compositions. Two nitrogen-fixing microbial genera, Bradyrhizobium and Mesorhizobium, were among the most abundant taxa in the rhizomicrobiome. Moreover, several rhizobial genera, including Rhizobium, Pararhizobium, Allohrizobium, and Sinorhizobium, head the list of major modules in microbial co-occurrence networks, highlighting the vital roles of nitrogen-cycling taxa in the rhizomicrobiome of pioneering plants. Microbial genes involved in nitrogen, sulfur, phosphorus, and methane cycles were simultaneously correlated with microbial community dissimilarity, and 12 functional pathways were detected with distinct relative abundances among soils. Zooming in on the nitrogen-cycling genes, nifW, narC, nasA, nasB, and nirA were mainly responsible for the significant differences between soils. Furthermore, soil pH and the carbon/nitrogen ratio were among the topsoil properties interacting with nitrogen and sulfur cycling gene dissimilarity. These results explicitly linked biogeochemical cycling genes to the rhizomicrobiome and soil properties, revealing the roles of these genes as microbial drivers in mediating rhizosphere soil-plant-microbiome interactions.
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Affiliation(s)
- Shouqin Sun
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Water Resource and Hydropower, Sichuan University, Chengdu 610065, China.
| | - Bin Ma
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Genxu Wang
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Water Resource and Hydropower, Sichuan University, Chengdu 610065, China.
| | - Xiangfeng Tan
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Institute of Digital Agriculture, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
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3
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Chen X, Qi X, Ren G, Chang R, Qin X, Liu G, Zhuang G, Ma A. Niche-mediated bacterial community composition in continental glacier alluvial valleys under cold and arid environments. Front Microbiol 2023; 14:1120151. [PMID: 36970702 PMCID: PMC10033870 DOI: 10.3389/fmicb.2023.1120151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Accepted: 02/14/2023] [Indexed: 03/11/2023] Open
Abstract
IntroductionBacteria are an essential component of glacier-fed ecosystems and play a dominant role in driving elemental cycling in the hydrosphere and pedosphere. However, studies of bacterial community composition mechanisms and their potential ecological functions from the alluvial valley of mountain glaciers are extremely scarce under cold and arid environments.MethodsHere, we analyzed the effects of major physicochemical parameters related to soil on the bacterial community compositions in an alluvial valley of the Laohugou Glacier No. 12 from the perspective of core, other, and unique taxa and explored their functional composition characteristics.Results and discussionThe different characteristics of core, other, and unique taxa highlighted the conservation and difference in bacterial community composition. The bacterial community structure of the glacial alluvial valley was mainly affected by the above sea level, soil organic carbon, and water holding capacity. In addition, the most common and active carbon metabolic pathways and their spatial distribution patterns along the glacial alluvial valley were revealed by FAPTOTAX. Collectively, this study provides new insights into the comprehensive assessment of glacier-fed ecosystems in glacial meltwater ceasing or glacier disappearance.
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Affiliation(s)
- Xianke Chen
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- Sino-Danish College, University of Chinese Academy of Sciences, Beijing, China
- Sino-Danish Center for Education and Research, Beijing, China
| | - Xiangning Qi
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Ge Ren
- National Institute of Metrology, Beijing, China
| | - Ruiying Chang
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, China
| | - Xiang Qin
- Qilian Shan Station of Glaciology and Eco-Environment, State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, China
| | - Guohua Liu
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Guoqiang Zhuang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Anzhou Ma
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
- *Correspondence: Anzhou Ma
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Zhang J, Ma A, Zhou H, Chen X, Zhou X, Liu G, Zhuang X, Qin X, Priemé A, Zhuang G. Unexpected high carbon losses in a continental glacier foreland on the Tibetan Plateau. ISME COMMUNICATIONS 2022; 2:68. [PMID: 37938688 PMCID: PMC9723710 DOI: 10.1038/s43705-022-00148-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Revised: 06/19/2022] [Accepted: 06/28/2022] [Indexed: 10/21/2023]
Abstract
Closely related with microbial activities, soil developments along the glacier forelands are generally considered a carbon sink; however, those of continental glacier forelands remain unclear. Continental glaciers are characterized by dry conditions and low temperature that limit microbial growth. We investigated the carbon characteristics along a chronosequence of the Laohugou Glacier No. 12 foreland, a typical continental glacier on the Tibetan Plateau, by analyzing soil bacterial community structure and microbial carbon-related functional potentials. We found an unexpected carbon loss in which soil organic carbon decreased from 22.21 g kg-1 to 10.77 g kg-1 after receding 50 years. Structural equation modeling verified the important positive impacts from bacterial community. Lower carbon fixation efficiency along the chronosequence was supported by less autotrophic bacteria and carbon fixation genes relating to the reductive tricarboxylic acid cycle. Lower carbon availability and higher carbon requirements were identified by an increasing bacterial copy number and a shift of the dominant bacterial community from Proteobacteria and Bacteroidetes (r-strategists) to Actinobacteria and Acidobacteria (K-strategists). Our findings show that the carbon loss of continental glacier foreland was significantly affected by the changes of bacterial community, and can help to avoid overestimating the carbon sink characteristics of glacier forelands in climate models.
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Affiliation(s)
- Jiejie Zhang
- Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- Sino-Danish College of University of Chinese Academy of Sciences, Beijing, 101400, China
- Sino-Danish Center for Education and Research, Beijing, 101400, China
| | - Anzhou Ma
- Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China.
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China.
| | - Hanchang Zhou
- Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xianke Chen
- Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- Sino-Danish College of University of Chinese Academy of Sciences, Beijing, 101400, China
- Sino-Danish Center for Education and Research, Beijing, 101400, China
| | - Xiaorong Zhou
- Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Guohua Liu
- Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xuliang Zhuang
- Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
- Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - Xiang Qin
- Qilian Shan Station of Glaciology and Eco-environment, State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Anders Priemé
- Department of Biology, University of Copenhagen, Copenhagen, DK-2100, Denmark
- Center for Permafrost, University of Copenhagen, Copenhagen, DK-1350, Denmark
| | - Guoqiang Zhuang
- Research Centre for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China.
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China.
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Klarenberg IJ, Keuschnig C, Russi Colmenares AJ, Warshan D, Jungblut AD, Jónsdóttir IS, Vilhelmsson O. Long-term warming effects on the microbiome and nifH gene abundance of a common moss species in sub-Arctic tundra. THE NEW PHYTOLOGIST 2022; 234:2044-2056. [PMID: 34719786 DOI: 10.1111/nph.17837] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 10/17/2021] [Indexed: 06/13/2023]
Abstract
Bacterial communities form the basis of biogeochemical processes and determine plant growth and health. Mosses harbour diverse bacterial communities that are involved in nitrogen fixation and carbon cycling. Global climate change is causing changes in aboveground plant biomass and shifting species composition in the Arctic, but little is known about the response of moss microbiomes in these environments. Here, we studied the total and potentially active bacterial communities associated with Racomitrium lanuginosum in response to a 20-yr in situ warming in an Icelandic heathland. We evaluated the effect of warming and warming-induced shrub expansion on the moss bacterial community composition and diversity, and nifH gene abundance. Warming changed both the total and the potentially active bacterial community structure, while litter abundance only affected the total bacterial community structure. The abundance of nifH genes was negatively affected by litter abundance. We also found shifts in the potentially nitrogen-fixing community, with Nostoc decreasing and noncyanobacterial diazotrophs increasing in relative abundance. Our data suggest that the moss microbial community and potentially nitrogen fixing taxa will be sensitive to future warming, partly via changes in litter and shrub abundance.
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Affiliation(s)
- Ingeborg J Klarenberg
- Natural Resource Sciences, University of Akureyri, Borgir i Nordurslod, Akureyri, 600, Iceland
- Faculty of Life and Environmental Sciences, University of Iceland, Sturlugata 7, 102, Reykjavík, Iceland
| | - Christoph Keuschnig
- Environmental Microbial Genomics, Laboratoire Ampère, École Centrale de Lyon, Université de Lyon, Avenue Guy de Collongue 36, Écully, 69134, France
| | - Ana J Russi Colmenares
- Faculty of Life and Environmental Sciences, University of Iceland, Sturlugata 7, 102, Reykjavík, Iceland
| | - Denis Warshan
- Faculty of Life and Environmental Sciences, University of Iceland, Sturlugata 7, 102, Reykjavík, Iceland
| | - Anne D Jungblut
- Life Sciences Department, Natural History Museum, Cromwell Road, London, SW7 5BD, UK
| | - Ingibjörg S Jónsdóttir
- Faculty of Life and Environmental Sciences, University of Iceland, Sturlugata 7, 102, Reykjavík, Iceland
| | - Oddur Vilhelmsson
- Natural Resource Sciences, University of Akureyri, Borgir i Nordurslod, Akureyri, 600, Iceland
- BioMedical Center, University of Iceland, Vatnsmýrarvegur 16, 101, Reykjavík, Iceland
- School of Biological Sciences, University of Reading, Whiteknights, Reading, RG6 6AJ, UK
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6
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Abstract
The glaciers in China have an important role as one of the most climate-sensitive constituents of the Tibetan Plateau which is known as the Asian Water Tower. Although the cryosphere is one of the most extreme environments for organisms, the soils of the glacier foreland harbor surprisingly rich microbiomes. A large amount of accelerated glacier retreat accompanied by global warming will not only raise the sea level, but it will also lead to the massive release of a considerable amount of carbon stored in these glaciers. The responses of glacier microbiomes could alter the biogeochemical cycle of carbon and have a complex impact on climate change. Thus, understanding present-day and future glacier microbiome changes is crucial to assess the feedback on climate change and the impacts on ecosystems. To this end, we discuss here the diversity and biogeochemical functions of the microbiomes in Chinese mountain glacier ecosystems.
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7
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Varliero G, Anesio AM, Barker GLA. A Taxon-Wise Insight Into Rock Weathering and Nitrogen Fixation Functional Profiles of Proglacial Systems. Front Microbiol 2021; 12:627437. [PMID: 34621246 PMCID: PMC8491546 DOI: 10.3389/fmicb.2021.627437] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Accepted: 08/05/2021] [Indexed: 11/13/2022] Open
Abstract
The Arctic environment is particularly affected by global warming, and a clear trend of the ice retreat is observed worldwide. In proglacial systems, the newly exposed terrain represents different environmental and nutrient conditions compared to later soil stages. Therefore, proglacial systems show several environmental gradients along the soil succession where microorganisms are active protagonists of the soil and carbon pool formation through nitrogen fixation and rock weathering. We studied the microbial succession of three Arctic proglacial systems located in Svalbard (Midtre Lovénbreen), Sweden (Storglaciären), and Greenland (foreland close to Kangerlussuaq). We analyzed 65 whole shotgun metagenomic soil samples for a total of more than 400 Gb of sequencing data. Microbial succession showed common trends typical of proglacial systems with increasing diversity observed along the forefield chronosequence. Microbial trends were explained by the distance from the ice edge in the Midtre Lovénbreen and Storglaciären forefields and by total nitrogen (TN) and total organic carbon (TOC) in the Greenland proglacial system. Furthermore, we focused specifically on genes associated with nitrogen fixation and biotic rock weathering processes, such as nitrogenase genes, obcA genes, and genes involved in cyanide and siderophore synthesis and transport. Whereas we confirmed the presence of these genes in known nitrogen-fixing and/or rock weathering organisms (e.g., Nostoc, Burkholderia), in this study, we also detected organisms that, even if often found in soil and proglacial systems, have never been related to nitrogen-fixing or rock weathering processes before (e.g., Fimbriiglobus, Streptomyces). The different genera showed different gene trends within and among the studied systems, indicating a community constituted by a plurality of organisms involved in nitrogen fixation and biotic rock weathering, and where the latter were driven by different organisms at different soil succession stages.
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Affiliation(s)
- Gilda Varliero
- School of Biological Sciences, University of Bristol, Bristol, United Kingdom
| | | | - Gary L. A. Barker
- School of Biological Sciences, University of Bristol, Bristol, United Kingdom
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8
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Chen Y, Liu F, Kang L, Zhang D, Kou D, Mao C, Qin S, Zhang Q, Yang Y. Large-scale evidence for microbial response and associated carbon release after permafrost thaw. GLOBAL CHANGE BIOLOGY 2021; 27:3218-3229. [PMID: 33336478 DOI: 10.1111/gcb.15487] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Accepted: 12/04/2020] [Indexed: 06/12/2023]
Abstract
Permafrost thaw could trigger the release of greenhouse gases through microbial decomposition of the large quantities of carbon (C) stored within frozen soils. However, accurate evaluation of soil C emissions from thawing permafrost is still a big challenge, partly due to our inadequate understanding about the response of microbial communities and their linkage with soil C release upon permafrost thaw. Based on a large-scale permafrost sampling across 24 sites on the Tibetan Plateau, we employed meta-genomic technologies (GeoChip and Illumina MiSeq sequencing) to explore the impacts of permafrost thaw (permafrost samples were incubated for 11 days at 5°C) on microbial taxonomic and functional communities, and then conducted a laboratory incubation to investigate the linkage of microbial taxonomic and functional diversity with soil C release after permafrost thaw. We found that bacterial and fungal α diversity decreased, but functional gene diversity and the normalized relative abundance of C degradation genes increased after permafrost thaw, reflecting the rapid microbial response to permafrost thaw. Moreover, both the microbial taxonomic and functional community structures differed between the thawed permafrost and formerly frozen soils. Furthermore, soil C release rate over five month incubation was associated with microbial functional diversity and C degradation gene abundances. By contrast, neither microbial taxonomic diversity nor community structure exhibited any significant effects on soil C release over the incubation period. These findings demonstrate that permafrost thaw could accelerate C emissions by altering the function potentials of microbial communities rather than taxonomic diversity, highlighting the crucial role of microbial functional genes in mediating the responses of permafrost C cycle to climate warming.
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Affiliation(s)
- Yongliang Chen
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Futing Liu
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Luyao Kang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Dianye Zhang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Dan Kou
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Chao Mao
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Shuqi Qin
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Qiwen Zhang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Yuanhe Yang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
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Ma K, Ma A, Zheng G, Ren G, Xie F, Zhou H, Yin J, Liang Y, Zhuang X, Zhuang G. Mineralosphere Microbiome Leading to Changed Geochemical Properties of Sedimentary Rocks from Aiqigou Mud Volcano, Northwest China. Microorganisms 2021; 9:560. [PMID: 33803112 PMCID: PMC7998385 DOI: 10.3390/microorganisms9030560] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 03/03/2021] [Accepted: 03/04/2021] [Indexed: 12/26/2022] Open
Abstract
The properties of rocks can be greatly affected by seepage hydrocarbons in petroleum-related mud volcanoes. Among them, the color of sedimentary rocks can reflect the changes of sedimentary environment and weathering history. However, little is known about the microbial communities and their biogeochemical significance in these environments. In this study, contrasting rock samples were collected from the Aiqigou mud volcano on the southern margin of the Junggar Basin in Northwest China as guided by rock colors indicative of redox conditions. The physicochemical properties and mineral composition are similar under the same redox conditions. For example, the content of chlorite, muscovite, quartz, and total carbon were higher, and the total iron was lower under reduced conditions compared with oxidized environments. High-throughput sequencing of 16S rRNA gene amplicons revealed that different functional microorganisms may exist under different redox conditions; microbes in oxidized conditions have higher diversity. Statistical analysis and incubation experiments indicated that the microbial community structure is closely related to the content of iron which may be an important factor for color stratification of continental sedimentary rocks in the Aiqigou mud volcano. The interactions between organics and iron-bearing minerals mediated by microorganisms have also been hypothesized.
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Affiliation(s)
- Ke Ma
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (K.M.); (F.X.); (H.Z.); (J.Y.); (Y.L.); (X.Z.)
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
- Sino-Danish College, University of Chinese Academy of Sciences, Beijing 101400, China
- Sino-Danish Center for Education and Research, Beijing 101400, China
| | - Anzhou Ma
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (K.M.); (F.X.); (H.Z.); (J.Y.); (Y.L.); (X.Z.)
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guodong Zheng
- Key Laboratory of Petroleum Resources, Institute of Geology and Geophysics, Chinese Academy of Sciences, Lanzhou 730000, China;
| | - Ge Ren
- National Institute of Metrology, Beijing 100029, China;
| | - Fei Xie
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (K.M.); (F.X.); (H.Z.); (J.Y.); (Y.L.); (X.Z.)
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hanchang Zhou
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (K.M.); (F.X.); (H.Z.); (J.Y.); (Y.L.); (X.Z.)
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jun Yin
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (K.M.); (F.X.); (H.Z.); (J.Y.); (Y.L.); (X.Z.)
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yu Liang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (K.M.); (F.X.); (H.Z.); (J.Y.); (Y.L.); (X.Z.)
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xuliang Zhuang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (K.M.); (F.X.); (H.Z.); (J.Y.); (Y.L.); (X.Z.)
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guoqiang Zhuang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (K.M.); (F.X.); (H.Z.); (J.Y.); (Y.L.); (X.Z.)
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
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10
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Xia J, Wang J, Niu S. Research challenges and opportunities for using big data in global change biology. GLOBAL CHANGE BIOLOGY 2020; 26:6040-6061. [PMID: 32799353 DOI: 10.1111/gcb.15317] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Accepted: 07/13/2020] [Indexed: 06/11/2023]
Abstract
Global change biology has been entering a big data era due to the vast increase in availability of both environmental and biological data. Big data refers to large data volume, complex data sets, and multiple data sources. The recent use of such big data is improving our understanding of interactions between biological systems and global environmental changes. In this review, we first explore how big data has been analyzed to identify the general patterns of biological responses to global changes at scales from gene to ecosystem. After that, we investigate how observational networks and space-based big data have facilitated the discovery of emergent mechanisms and phenomena on the regional and global scales. Then, we evaluate the predictions of terrestrial biosphere under global changes by big modeling data. Finally, we introduce some methods to extract knowledge from big data, such as meta-analysis, machine learning, traceability analysis, and data assimilation. The big data has opened new research opportunities, especially for developing new data-driven theories for improving biological predictions in Earth system models, tracing global change impacts across different organismic levels, and constructing cyberinfrastructure tools to accelerate the pace of model-data integrations. These efforts will uncork the bottleneck of using big data to understand biological responses and adaptations to future global changes.
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Affiliation(s)
- Jianyang Xia
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, Research Center for Global Change and Ecological Forecasting, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Jing Wang
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, Research Center for Global Change and Ecological Forecasting, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
- Shanghai Institute of Pollution Control and Ecological Security, Shanghai, China
| | - Shuli Niu
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
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Xie F, Ma A, Zhou H, Liang Y, Yin J, Ma K, Zhuang X, Zhuang G. Niche differentiation of denitrifying anaerobic methane oxidizing bacteria and archaea leads to effective methane filtration in a Tibetan alpine wetland. ENVIRONMENT INTERNATIONAL 2020; 140:105764. [PMID: 32371309 DOI: 10.1016/j.envint.2020.105764] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2020] [Revised: 04/21/2020] [Accepted: 04/22/2020] [Indexed: 06/11/2023]
Abstract
Denitrifying anaerobic methane oxidation (DAMO) is a vital methane sink in wetlands. However, the interactions and niche partitioning of DAMO bacteria and archaea in freshwater wetland soils, in addition to the interactions among microorganisms that couple methane and nitrogen cycling is still unclear, despite that these factors may govern the fate of methane and nitrogen in wetlands. Here, we evaluated the vertical distribution of DAMO bacteria and archaea in soil layers along with the potential interactions among populations in the methane-coupled nitrogen cycling microbial community of Tibetan freshwater wetlands. A combination of molecular biology, stable isotope tracer technology, and microbial bioinformatics was used to evaluate these interrelated dynamics. The abundances and potential methane oxidation rates indicated that DAMO bacteria and archaea differentially occupy surface and subsurface soil layers, respectively. The inferred interactions between DAMO bacteria and nitrogen cycling microorganisms within their communities are complex, DAMO bacteria apparently achieve an advantage in the highly competitive environment of surface soils layers and occupy a specific niche in those environments. Conversely, the apparent relationships between DAMO archaea and nitrogen cycling microorganisms are relatively simple, wherein high levels of cooperation are inferred between DAMO archaea and nitrate-producing organisms in subsurface soils layers. These results suggest that the vertical distribution patterns of DAMO bacteria and archaea enable them to play significant roles in the methane oxidation activity of different soil layers and collectively form an effective methane filtration consortium.
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Affiliation(s)
- Fei Xie
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Anzhou Ma
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China.
| | - Hanchang Zhou
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Yu Liang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Jun Yin
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Ke Ma
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China; Sino-Danish College of University of Chinese Academy of Sciences, 101400 Beijing, China
| | - Xuliang Zhuang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China
| | - Guoqiang Zhuang
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085 Beijing, China; University of Chinese Academy of Sciences, 100049 Beijing, China.
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