Contrasting mechanisms underlie short- and longer-term soil respiration responses to experimental warming in a dryland ecosystem

Stronger compensatory thermal adaptation of soil microbial respiration with higher substrate availability

Ongoing global warming is expected to augment soil respiration by increasing the microbial activity, driving self-reinforcing feedback to climate change. However, the compensatory thermal adaptation of soil microorganisms and substrate depletion may weaken the effects of rising temperature on soil respiration. To test this hypothesis, we collected soils along a large-scale forest transect in eastern China spanning a natural temperature gradient, and we incubated the soils at different temperatures with or without substrate addition. We combined the exponential thermal response function and a data-driven model to study the interaction effect of thermal adaptation and substrate availability on microbial respiration and compared our results to those from two additional continental and global independent datasets. Modeled results suggested that the effect of thermal adaptation on microbial respiration was greater in areas with higher mean annual temperatures, which is consistent with the compensatory response to warming. In addition, the effect of thermal adaptation on microbial respiration was greater under substrate addition than under substrate depletion, which was also true for the independent datasets reanalyzed using our approach. Our results indicate that thermal adaptation in warmer regions could exert a more pronounced negative impact on microbial respiration when the substrate availability is abundant. These findings improve the body of knowledge on how substrate availability influences the soil microbial community-temperature interactions, which could improve estimates of projected soil carbon losses to the atmosphere through respiration.

On the phenology of soil organisms: Current knowledge and future steps

Phenology is the study of timing of periodic activities in biological life cycles. It describes an inherent component of ecosystem dynamics, and shifts in biological activity have been increasingly recognized as an indicator of global change. Although phenology is mainly studied above the ground, major ecosystem processes, such as decomposition, mineralization, and nutrient cycling, are soil-dependent. Therefore, the phenology of soil organisms is a crucial, but understudied, aspect of terrestrial ecosystem functioning. We performed a systematic review of 96 studies, which reported 228 phenological observations, to evaluate the current knowledge of soil microbial and animal phenology. Despite the increasing number of soil phenology reports, most research is still concentrated in a few countries (centered in the Northern Hemisphere) and taxa (microbiota), with significant gaps in the most diverse regions of the globe (i.e., tropics) and important taxa (e.g., ants, termites, and earthworms). Moreover, biotic predictors (e.g., biodiversity and species interactions) have rarely been considered as possible drivers of soil organisms' phenology. We present recommendations for future soil phenology research based on an evaluation of the reported geographical, taxonomic, and methodologic trends that bias current soil phenology research. First, we highlight papers that depict good soil phenology practice, either regarding the research foci, methodological approaches, or results reporting. Then, we discuss the gaps, challenges, and opportunities for future research. Overall, we advocate that focusing both on highly diverse ecosystems and key soil organisms, while testing for the direct and indirect effects of biodiversity loss and climatic stressors, could increase our knowledge of soil functioning and enhance the accuracy of predictions depicting the effects of global change on terrestrial ecosystem functioning as a whole.

Low soil moisture suppresses the thermal compensatory response of microbial respiration

The thermal compensatory response of microbial respiration contributes to a decrease in warming-induced enhancement of soil respiration over time, which could weaken the positive feedback between the carbon cycle and climate warming. Climate warming is also predicted to cause a worldwide decrease in soil moisture, which has an effect on the microbial metabolism of soil carbon. However, whether and how changes in moisture affect the thermal compensatory response of microbial respiration are unexplored. Here, using soils from an 8-year warming experiment in an alpine grassland, we assayed the thermal response of microbial respiration rates at different soil moisture levels. The results showed that relatively low soil moisture suppressed the thermal compensatory response of microbial respiration, leading to an enhanced response to warming. A subsequent moisture incubation experiment involving off-plot soils also showed that the response of microbial respiration to 100 d warming shifted from a slight compensatory response to an enhanced response with decreasing incubation moisture. Further analysis revealed that such respiration regulation by moisture was associated with shifts in enzymatic activities and carbon use efficiency. Our findings suggest that future drought induced by climate warming might weaken the thermal compensatory capacity of microbial respiration, with important consequences for carbon-climate feedback.

Optimal growth temperature of Arctic soil bacterial communities increases under experimental warming

Future climate warming in the Arctic will likely increase the vulnerability of soil carbon stocks to microbial decomposition. However, it remains uncertain to what extent decomposition rates will change in a warmer Arctic, because extended soil warming could induce temperature adaptation of bacterial communities. Here we show that experimental warming induces shifts in the temperature-growth relationships of bacterial communities, which is driven by community turnover and is common across a diverse set of 8 (sub) Arctic soils. The optimal growth temperature (T_opt ) of the soil bacterial communities increased 0.27 ± 0.039 (SE) and 0.07 ± 0.028°C per °C of warming over a 0-30°C gradient, depending on the sampling moment. We identify a potential role for substrate depletion and time-lag effects as drivers of temperature adaption in soil bacterial communities, which possibly explain discrepancies between earlier incubation and field studies. The changes in T_opt were accompanied by species-level shifts in bacterial community composition, which were mostly soil specific. Despite the clear physiological responses to warming, there was no evidence for a common set of temperature-responsive bacterial amplicon sequence variants. This implies that community composition data without accompanying physiological measurements may have limited utility for the identification of (potential) temperature adaption of soil bacterial communities in the Arctic. Since bacterial communities in Arctic soils are likely to adapt to increasing soil temperature under future climate change, this adaptation to higher temperature should be implemented in soil organic carbon modeling for accurate predictions of the dynamics of Arctic soil carbon stocks.

Biocrusts Modulate Climate Change Effects on Soil Organic Carbon Pools: Insights From a 9-Year Experiment

Accumulating evidence suggests that warming associated with climate change is decreasing the total amount of soil organic carbon (SOC) in drylands, although scientific research has not given enough emphasis to particulate (POC) and mineral-associated organic carbon (MAOC) pools. Biocrusts are a major biotic feature of drylands and have large impacts on the C cycle, yet it is largely unknown whether they modulate the responses of POC and MAOC to climate change. Here, we assessed the effects of simulated climate change (control, reduced rainfall (RE), warming (WA), and RE + WA) and initial biocrust cover (low (< 20%) versus high (> 50%)) on the mineral protection of soil C and soil organic matter quality in a dryland ecosystem in central Spain for 9 years. At low initial biocrust cover levels, both WA and RE + WA increased SOC, especially POC but also MAOC, and promoted a higher contribution of carbohydrates, relative to aromatic compounds, to the POC fraction. These results suggest that the accumulation of soil C under warming treatments may be transitory in soils with low initial biocrust cover. In soils with high initial biocrust cover, climate change treatments did not affect SOC, neither POC nor MAOC fraction. Overall, our results indicate that biocrust communities modulate the negative effect of climate change on SOC, because no losses of soil C were observed with the climate manipulations under biocrusts. Future work should focus on determining the long-term persistence of the observed buffering effect by biocrust-forming lichens, as they are known to be negatively affected by warming.

Supplementary Information

The online version contains supplementary material available at 10.1007/s10021-022-00779-0.

Reference for different sensitivities of greenhouse gases effluxes to warming climate among types of desert biological soil crust

There is much uncertainty about how climate warming will impact greenhouse gases (GHG) budget in dry environments due to the lack of available data for desert biocrust soil. We implemented a 2.5-year field measurement of CO₂, CH₄ and N₂O effluxes in cyanobacteria-dominated, moss-dominated and mixed (cyanobacteria, moss and lichen) biocrust soils using open-top-chambers to simulate climate warming (1.2 °C on average). Desert biocrust soils generally acted as a weak sink of atmospheric CH₄ and N₂O. Although warming effects on daily CO₂, CH₄, and N₂O effluxes varied depending on sampling date and biocrust soil, there was no significant difference in daily, monthly and seasonal average CO₂, CH₄ and N₂O effluxes between warming and control in most cases for three biocrust soils. However, warming caused a marginal (p = 0.06) decrease (14.2%) in annual accumulative CO₂ efflux in moss-dominated biocrust soil due to the drought effects caused by warming indirectly and OTC sheltering of precipitation directly, while there was no significant difference between warming and control for cyanobacteria-dominated and mixed biocrust soils, implying a neutral response of GHG effluxes to climate warming. These results suggest that the GHG budget in arid desert biocrust soil would not be significantly changed in the warmer future when the direct negative effects of drought on CO₂ effluxes were excluded. Therefore, a marginal decrease of accumulative CO₂ effluxes in response to warming coupled with drought for moss-dominated biocrust soil might offer a weak negative feedback to warming and drier climate change pattern.

Effects of warming and precipitation changes on soil GHG fluxes: A meta-analysis

Increased atmospheric greenhouse gas (GHG) concentrations resulting from human activities lead to climate change, including global warming and changes of precipitation patterns worldwide, which in turn would have profound effects on soil GHG emissions. Nonetheless, the impact of the combination of warming and precipitation changes on all three major biogenic GHGs (CO₂, CH₄ and N₂O) has not been synthesized, to build a global synthesis. In this study, we conducted a global meta-analysis concerning the effects of warming and precipitation changes and their interactions on soil GHG fluxes and explored the potential factors by synthesizing 39 published studies worldwide. Across all studies, combination of warming and increased precipitation showed more significant effect on CO₂ emissions (24.0%) than the individual effect of warming (8.6%) and increased precipitation (20.8%). Additionally, warming increased N₂O emissions (28.3%), and decreased precipitation reduced CO₂ (-8.5%) and N₂O (-7.1%) emissions, while the combination of warming and decreased precipitation also showed negative effects on CO₂ (-7.6%) and N₂O (-14.6%) emissions. The interactive effects of warming and precipitation changes on CO₂ emissions were usually additive, whereas CO₂ and N₂O emissions were dominated by synergistic effects under warming and decreased precipitation. Moreover, climate, biome, duration, and season of manipulations also affected soil GHG fluxes as well. Furthermore, we also found the threshold effects of changes in soil temperature and moisture on CO₂ and N₂O emissions under warming and precipitation changes. The findings indicate that both warming and precipitation changes substantially affect GHG emissions and highlight the urgent need to study the effect of the combination of warming and precipitation changes on C and N cycling under ongoing climate change.

Species-specific effects of biocrust-forming lichens on soil properties under simulated climate change are driven by functional traits

Biocrusts are key drivers of ecosystem functioning in drylands, yet our understanding of how climate change will affect the chemistry of biocrust-forming species and their impacts on carbon (C) and nitrogen (N) cycling is still very limited. Using a manipulative experiment conducted with common biocrust-forming lichens with distinct morphology and chemistry (Buellia zoharyi, Diploschistes diacapsis, Psora decipiens and Squamarina lentigera), we evaluated changes in lichen total and isotopic C and N and several soil C and N variables after 50 months of simulated warming and rainfall reduction. Climate change treatments reduced δ¹³ C and the C : N ratio in B. zoharyi, and increased δ¹⁵ N in S. lentigera. Lichens had species-specific effects on soil dissolved organic N (DON), NH4+ , β-glucosidase and acid phosphatase activity regardless of climate change treatments, while these treatments changed how lichens affected several soil properties regardless of biocrust species. Changes in thallus δ¹³ C, N and C : N drove species-specific effects on dissolved organic nitrogen (DON), NH4+ , β-glucosidase and acid phosphatase activity. Our findings indicate that warmer and drier conditions will alter the chemistry of biocrust-forming lichens, affecting soil nutrient cycling, and emphasize their key role as modulators of climate change impacts in dryland soils.