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Liu N, Guo Q, Shi F, Gao L, Liu Y, Wang Y, Gong Z, Liu H, Sun Y, Li B, Ni B, Zhu RL, Zhao Q. Developmentally controlled subcellular remodeling and VND-initiated vacuole-executed PCD module shape xylem-like cells in peat moss. Commun Biol 2024; 7:1323. [PMID: 39402183 DOI: 10.1038/s42003-024-07003-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 10/02/2024] [Indexed: 10/17/2024] Open
Abstract
Peat moss (Sphagnum) is a non-vascular higher plant with unique xylem-like hyaline (H) cells that are accompanied by photosynthetic chlorophyllous cells. These cellular structures play crucial roles in water storage and carbon sequestration. However, it is largely unknown how peat moss develops the H cells. This study systematically explored the Sphagnum Developmental Cell Atlas and Lineage and classified leaf cell development into two lineages with six stages (S0-S5) based on changes in key cellular traits, including the formation of spiral secondary cell walls (S4) and the presence of water pores (S5). Cell lineage-specific subcellular remodeling was transcriptionally regulated during leaf development, and vacuole-mediated clearance of organelles and cell death led to mature dead H cells. Interestingly, expression of land plant conserved Vascular-related NAC Domain (VND) genes correlated with H cell formation. Overall, these results suggest that the origination of xylem-like H cells is related to VND, likely through the neofunctionalization of vacuole-mediated cell death to attempt xylem formation in peat moss, suggesting potential uncoupling of xylem and phloem cell origins. This study positions peat moss as a potential model organism for studying integrative evolutionary cell biology.
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Affiliation(s)
- Ningjing Liu
- School of Life Sciences, East China Normal University, 200241, Shanghai, China
| | - Qiuqi Guo
- School of Life Sciences, East China Normal University, 200241, Shanghai, China
| | - Fangming Shi
- School of Life Sciences, East China Normal University, 200241, Shanghai, China
| | - Lei Gao
- The IDG/McGovern Institute for Brain Research, School of Life Sciences, Tsinghua University, Beijing, China
| | - Yongqi Liu
- Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agriculture Sciences in Weifang, Weifang, Shandong, China
| | - Yiwen Wang
- School of Life Sciences, East China Normal University, 200241, Shanghai, China
| | - Zhiwei Gong
- School of Life Sciences, East China Normal University, 200241, Shanghai, China
| | - Haoran Liu
- School of Life Sciences, East China Normal University, 200241, Shanghai, China
| | - Yue Sun
- School of Life Sciences, East China Normal University, 200241, Shanghai, China
| | - Bosheng Li
- Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agriculture Sciences in Weifang, Weifang, Shandong, China
| | - Bing Ni
- School of Life Sciences, East China Normal University, 200241, Shanghai, China
| | - Rui-Liang Zhu
- School of Life Sciences, East China Normal University, 200241, Shanghai, China
| | - Qiong Zhao
- School of Life Sciences, East China Normal University, 200241, Shanghai, China.
- Institute of Eco-Chongming, Shanghai, China.
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Deshmukh CS, Susanto AP, Nardi N, Nurholis N, Kurnianto S, Suardiwerianto Y, Hendrizal M, Rhinaldy A, Mahfiz RE, Desai AR, Page SE, Cobb AR, Hirano T, Guérin F, Serça D, Prairie YT, Agus F, Astiani D, Sabiham S, Evans CD. Net greenhouse gas balance of fibre wood plantation on peat in Indonesia. Nature 2023; 616:740-746. [PMID: 37020018 PMCID: PMC10132972 DOI: 10.1038/s41586-023-05860-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Accepted: 02/16/2023] [Indexed: 04/07/2023]
Abstract
Tropical peatlands cycle and store large amounts of carbon in their soil and biomass1-5. Climate and land-use change alters greenhouse gas (GHG) fluxes of tropical peatlands, but the magnitude of these changes remains highly uncertain6-19. Here we measure net ecosystem exchanges of carbon dioxide, methane and soil nitrous oxide fluxes between October 2016 and May 2022 from Acacia crassicarpa plantation, degraded forest and intact forest within the same peat landscape, representing land-cover-change trajectories in Sumatra, Indonesia. This allows us to present a full plantation rotation GHG flux balance in a fibre wood plantation on peatland. We find that the Acacia plantation has lower GHG emissions than the degraded site with a similar average groundwater level (GWL), despite more intensive land use. The GHG emissions from the Acacia plantation over a full plantation rotation (35.2 ± 4.7 tCO2-eq ha-1 year-1, average ± standard deviation) were around two times higher than those from the intact forest (20.3 ± 3.7 tCO2-eq ha-1 year-1), but only half of the current Intergovernmental Panel on Climate Change (IPCC) Tier 1 emission factor (EF)20 for this land use. Our results can help to reduce the uncertainty in GHG emissions estimates, provide an estimate of the impact of land-use change on tropical peat and develop science-based peatland management practices as nature-based climate solutions.
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Affiliation(s)
- Chandra S Deshmukh
- Asia Pacific Resources International Ltd., Pelalawan Regency, Indonesia.
| | - Ari P Susanto
- Asia Pacific Resources International Ltd., Pelalawan Regency, Indonesia
| | - Nardi Nardi
- Asia Pacific Resources International Ltd., Pelalawan Regency, Indonesia
| | - Nurholis Nurholis
- Asia Pacific Resources International Ltd., Pelalawan Regency, Indonesia
| | - Sofyan Kurnianto
- Asia Pacific Resources International Ltd., Pelalawan Regency, Indonesia
| | | | - M Hendrizal
- Asia Pacific Resources International Ltd., Pelalawan Regency, Indonesia
| | - Ade Rhinaldy
- Asia Pacific Resources International Ltd., Pelalawan Regency, Indonesia
| | - Reyzaldi E Mahfiz
- Asia Pacific Resources International Ltd., Pelalawan Regency, Indonesia
| | - Ankur R Desai
- Department of Atmospheric and Oceanic Sciences, University of Wisconsin-Madison, Madison, WI, USA
| | - Susan E Page
- School of Geography, Geology and the Environment, University of Leicester, Leicester, UK
| | - Alexander R Cobb
- Singapore-MIT Alliance for Research and Technology, Singapore, Singapore
| | - Takashi Hirano
- Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan
| | - Frédéric Guérin
- Géosciences Environnement Toulouse, CNRS, IRD, Université Paul-Sabatier, Toulouse, France
| | - Dominique Serça
- LAERO, Université de Toulouse, CNRS, IRD, UT3, Toulouse, France
| | - Yves T Prairie
- UNESCO Chair in Global Environmental Change, Université du Québec à Montréal, Montréal, Québec, Canada
| | - Fahmuddin Agus
- National Research and Innovation Agency (BRIN), Cibinong, Indonesia
| | - Dwi Astiani
- Faculty of Forestry, Tanjungpura University, Pontianak, Indonesia
| | - Supiandi Sabiham
- Department of Soil Science and Land Resources, IPB University, Bogor, Indonesia
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