1
|
Lorenz C, Vitale E, Hay-Mele B, Arena C. Plant growth promoting rhizobacteria (PGPR) application for coping with salinity and drought: a bibliometric network multi-analysis. PLANT BIOLOGY (STUTTGART, GERMANY) 2024; 26:777-788. [PMID: 38843103 DOI: 10.1111/plb.13661] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2023] [Accepted: 05/03/2024] [Indexed: 07/21/2024]
Abstract
Rhizobacteria play a crucial role in plant growth and yield, stimulating primary production and improving stress resistance. Climate change has several consequences worldwide that affect arable land and agriculture. Studies on plant-soil-microorganism interactions to enhance plant productivity and/or resistance to abiotic stress may open new perspectives. This strategy aims to make agricultural-relevant plant species able to complete their biological cycle in extreme soils with the help of inoculated or primed plant growth-promoting rhizobacteria (PGPR). We provide an overview of the evolution of interest in PGPR research in the last 30 years through: (i) a quantitative search on the Scopus database; (ii) keyword frequencies and clustering analysis, and (iii) a keyword network and time-gradient analysis. The review of scientific literature on PGPR highlighted an increase in publications in the last 15 years, and a specific time gradient on subtopics, such as abiotic stresses. The rise in PGPR as a keyword co-occurring with salinity and drought stresses aligns with the growing number of papers from countries directly or partly affected by climate change. The study of PGPR, its features, and related applications will be a key challenge in the next decades, considering climate change effects on agriculture. The increased interest in PGPR leads to deeper knowledge focused specifically on researching agriculturally sustainable solutions for soils affected by salinity and drought.
Collapse
Affiliation(s)
- C Lorenz
- Laboratory of Plant Ecology, Department of Biology, University of Naples Federico II, Naples, Italy
| | - E Vitale
- Laboratory of Plant Ecology, Department of Biology, University of Naples Federico II, Naples, Italy
| | - B Hay-Mele
- Laboratory of Plant Ecology, Department of Biology, University of Naples Federico II, Naples, Italy
| | - C Arena
- Laboratory of Plant Ecology, Department of Biology, University of Naples Federico II, Naples, Italy
- NBFC-National Biodiversity Future Center, Palermo, Italy
| |
Collapse
|
2
|
Rychel-Bielska S, Książkiewicz M, Kurasiak-Popowska D, Tomkowiak A, Bielski W, Weigt D, Niemann J, Surma A, Kozak B, Nawracała J. Molecular selection of soybean towards adaptation to Central European agroclimatic conditions. J Appl Genet 2024:10.1007/s13353-024-00889-6. [PMID: 38954397 DOI: 10.1007/s13353-024-00889-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 06/03/2024] [Accepted: 06/20/2024] [Indexed: 07/04/2024]
Abstract
Europe is highly dependent on soybean meal imports and anticipates an increase of domestic plant protein production. Ongoing climate change resulted in northward shift of plant hardiness zones, enabling spring-sowing of freezing-sensitive crops, including soybean. However, it requires efficient reselection of germplasm adapted to relatively short growing season and long-day photoperiod. In the present study, a PCR array has been implemented, targeting early maturity (E1-E4, E7, E9, and E10), pod shattering (qPHD1), and growth determination (Dt1) genes. This array was optimized for routine screening of soybean diversity panel (204 accessions), subjected to the 2018-2020 survey of phenology, morphology, and yield-related traits in a potential cultivation region in Poland. High broad-sense heritability (0.84-0.88) was observed for plant height, thousand grain weight, maturity date, and the first pod height. Significant positive correlations were identified between the number of seeds and pods per plant, between these two traits and seed yield per plant as well as between flowering, maturity, plant height, and first pod height. PCR array genotyping revealed high genetic diversity, yielding 98 allelic combinations. The most remarkable correlations were identified between flowering and E7 or E1, between maturity and E4 or E7 and between plant height and Dt1 or E4. The study demonstrated high applicability of this PCR array for molecular selection of soybean towards adaptation to Central Europe, designating recessive qPHD1 and dominant Dt1, E3, and E4 alleles as major targets to align soybean growth season requirements with the length of the frost-free period, improve plant performance, and increase yield.
Collapse
Affiliation(s)
- Sandra Rychel-Bielska
- Department of Genetics, Plant Breeding and Seed Production, Wroclaw University of Environmental and Life Sciences, 50-363, Wrocław, Poland
| | - Michał Książkiewicz
- Department of Gene Structure and Function, Institute of Plant Genetics, Polish Academy of Sciences, 60-479, Poznań, Poland.
| | - Danuta Kurasiak-Popowska
- Department of Genetics and Plant Breeding, Faculty of Agronomy, Horticulture and Bioengineering, Poznań University of Life Sciences, 60-632, Poznań, Poland
| | - Agnieszka Tomkowiak
- Department of Genetics and Plant Breeding, Faculty of Agronomy, Horticulture and Bioengineering, Poznań University of Life Sciences, 60-632, Poznań, Poland
| | - Wojciech Bielski
- Department of Gene Structure and Function, Institute of Plant Genetics, Polish Academy of Sciences, 60-479, Poznań, Poland
- Department of Genetics and Plant Breeding, Faculty of Agronomy, Horticulture and Bioengineering, Poznań University of Life Sciences, 60-632, Poznań, Poland
| | - Dorota Weigt
- Department of Genetics and Plant Breeding, Faculty of Agronomy, Horticulture and Bioengineering, Poznań University of Life Sciences, 60-632, Poznań, Poland
| | - Janetta Niemann
- Department of Genetics and Plant Breeding, Faculty of Agronomy, Horticulture and Bioengineering, Poznań University of Life Sciences, 60-632, Poznań, Poland
| | - Anna Surma
- Department of Gene Structure and Function, Institute of Plant Genetics, Polish Academy of Sciences, 60-479, Poznań, Poland
| | - Bartosz Kozak
- Department of Genetics, Plant Breeding and Seed Production, Wroclaw University of Environmental and Life Sciences, 50-363, Wrocław, Poland
| | - Jerzy Nawracała
- Department of Genetics and Plant Breeding, Faculty of Agronomy, Horticulture and Bioengineering, Poznań University of Life Sciences, 60-632, Poznań, Poland
| |
Collapse
|
3
|
Rotundo JL, Marshall R, McCormick R, Truong SK, Styles D, Gerde JA, Gonzalez-Escobar E, Carmo-Silva E, Janes-Bassett V, Logue J, Annicchiarico P, de Visser C, Dind A, Dodd IC, Dye L, Long SP, Lopes MS, Pannecoucque J, Reckling M, Rushton J, Schmid N, Shield I, Signor M, Messina CD, Rufino MC. European soybean to benefit people and the environment. Sci Rep 2024; 14:7612. [PMID: 38556523 PMCID: PMC10982307 DOI: 10.1038/s41598-024-57522-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 03/19/2024] [Indexed: 04/02/2024] Open
Abstract
Europe imports large amounts of soybean that are predominantly used for livestock feed, mainly sourced from Brazil, USA and Argentina. In addition, the demand for GM-free soybean for human consumption is project to increase. Soybean has higher protein quality and digestibility than other legumes, along with high concentrations of isoflavones, phytosterols and minerals that enhance the nutritional value as a human food ingredient. Here, we examine the potential to increase soybean production across Europe for livestock feed and direct human consumption, and review possible effects on the environment and human health. Simulations and field data indicate rainfed soybean yields of 3.1 ± 1.2 t ha-1 from southern UK through to southern Europe (compared to a 3.5 t ha-1 average from North America). Drought-prone southern regions and cooler northern regions require breeding to incorporate stress-tolerance traits. Literature synthesized in this work evidenced soybean properties important to human nutrition, health, and traits related to food processing compared to alternative protein sources. While acknowledging the uncertainties inherent in any modelling exercise, our findings suggest that further integrating soybean into European agriculture could reduce GHG emissions by 37-291 Mt CO2e year-1 and fertiliser N use by 0.6-1.2 Mt year-1, concurrently improving human health and nutrition.
Collapse
Affiliation(s)
- Jose L Rotundo
- Corteva Agriscience, Seville, Spain.
- Corteva Agriscience, Johnston, USA.
| | - Rachel Marshall
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
| | | | | | - David Styles
- School of Biological and Chemical Sciences, University of Galway, Galway, Ireland
| | - Jose A Gerde
- Instituto de Ciencias Agrarias de Rosario, UNR, CONICET, Zavalla, Argentina
| | | | | | | | - Jennifer Logue
- Lancaster Medical School, Lancaster University, Lancaster, UK
| | | | - Chris de Visser
- Wageningen University and Research, Wageningen, The Netherlands
| | - Alice Dind
- Research Institute of Organic Agriculture (FiBL), Frick, Switzerland
| | - Ian C Dodd
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
| | - Louise Dye
- School of Psychology and Food Science and Nutrition, University of Leeds, Leeds, UK
| | - Stephen P Long
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
- Departments of Crop Sciences and of Plant Biology, University of Illinois, Champaign, USA
| | - Marta S Lopes
- Sustainable Field Crops, Institute of Agrifood Research and Technology (IRTA), Lleida, Spain
| | - Joke Pannecoucque
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Merelbeke, Belgium
| | - Moritz Reckling
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany
- Department of Crop Production Ecology, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden
| | - Jonathan Rushton
- Centre of Excellence for Sustainable Food Systems, University of Liverpool, Liverpool, UK
| | - Nathaniel Schmid
- Research Institute of Organic Agriculture (FiBL), Frick, Switzerland
| | | | - Marco Signor
- Regional Agency for Rural Development (ERSA), Gorizia, Italy
| | | | - Mariana C Rufino
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
- School of Life Sciences, Technical University of Munich, München, Germany
| |
Collapse
|
4
|
Lamichhane JR, Varaillas C, Debaeke P. Seedling emergence and biomass production of soybean cultivars under wheat-soybean relay cropping. PLoS One 2023; 18:e0293671. [PMID: 37910575 PMCID: PMC10619765 DOI: 10.1371/journal.pone.0293671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 10/09/2023] [Indexed: 11/03/2023] Open
Abstract
Diversification and intensification of cropping systems can ensure farm profitability while reducing negative environmental impacts of agriculture. Wheat-soybean relay cropping (RC), which consists in planting soybean into standing wheat prior to its harvest, may have this potential although it is poorly adopted by French and European farmers. One of the reasons underlying this lack of adoption could be poor emergence rates and biomass production of soybean, due to a severe competition from the already established primary crop for water, light and nutrients during the co-growth or intercrop phase. All these constraints during the early plant growth could finally affect soybean grain yield and thus farm profitability. Here, we performed a laboratory experiment followed by a 2-year field trial (2021-2022) to investigate potential differences among seven soybean cultivars belonging to different maturity groups (from very early to late) in terms of early growth traits viz. seed germination, seedling emergence vigor and final rates, and early biomass production in wheat-soybean RC. A reference soybean variety belonging to late maturity group (cv. ES Pallador) was also sown under conventional cropping system as control treatment (hereafter referred to as CC). Under laboratory conditions, the base water potential for germination ranged from -0.65 to -0.45 MPa with significant differences (p<0.001) among the tested cultivars indicating their differential tolerance to water stress. Under field conditions, seedling emergence vigor, an index explaining the speed of emergence, ranged from 0.23 to 0.41 and from 0.24 to 0.33 while final emergence rates ranged from 69% to 93% and from 65 to 90% in 2021 and 2022, respectively. We found significant effect of cultivar, year and cultivar x year interaction on emergence vigor (p<0.001) and final emergence rates (p<0.01, p<0.05 and p<0.01, respectively) of soybean cultivars. Significantly higher emergence vigor of the referent cv. ES Pallador was observed in RC compared to CC cropping system in 2021 (0.40 and 0.34, respectively) but not in 2022 (0.29 and 0.31, respectively). Water stress in the seedbed was higher in RC compared to the CC and was the main cause affecting seed germination and seedling emergence vigor especially in 2022. We found a positive correlation between seedling emergence vigor and seedling final emergence rates indicating that a lower speed of seedling emergence, due to seedbed stress factors, affects final emergence rates of soybean. Post-emergence losses due to pigeons were significantly higher (p<0.001) in CC compared to RC (30% and 2% in 2021, and 29% and 2% in 2022 in CC and RC, respectively). Significantly higher biomass production was observed in CC compared to that in RC both in 2021 (162 vs 33 g/m2 of dry matter; p<0.001) and 2022 (252 vs 60 g/m2 of dry matter; p<0.001). Overall, pre-/post-emergence water stress in the seedbed and post-emergence damage due to pigeons are the most important factors affecting a uniform and robust soybean establishment under RC and CC, respectively under southern French conditions.
Collapse
Affiliation(s)
| | - Carla Varaillas
- INRAE, University of Toulouse, UMR AGIR, Castanet-Tolosan, France
| | - Philippe Debaeke
- INRAE, University of Toulouse, UMR AGIR, Castanet-Tolosan, France
| |
Collapse
|
5
|
Vollmann J, Škrabišová M. Going north: adaptation of soybean to long-day environments. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:2933-2936. [PMID: 37208832 DOI: 10.1093/jxb/erad105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Accepted: 03/16/2023] [Indexed: 05/21/2023]
Abstract
This article comments on:
Zhu X, Leiser WL, Hahn V, Würschum T. 2023. The genetic architecture of soybean photothermal adaptation to high latitudes. Journal of Experimental Botany 74,2987–3002
In plant breeding, understanding genetic variation in the photoperiodic control of flowering time of crop plants such as soybean is a prerequisite for managing adaptation to new environments. Zhu et al. (2023) analyzed a large diversity panel of >1500 early maturity soybean lines to disclose the genetic architecture behind the timing of flowering and maturity. Their findings confirm known maturity loci and reveal new candidate genes and alleles as well as environmental interactions of individual quantitative trait loci (QTLs) for flowering and maturity time. The results shed light on the complexity of the regulatory network which controls the timing of flowering in soybean. This supports the fine-tuning of plant architectures through the combination of stem termination and flowering genes towards a better adaptation of soybean to high latitudes or other stressful environments.
Collapse
Affiliation(s)
- Johann Vollmann
- Department of Crop Sciences, University of Natural Resources and Life Sciences Vienna, 3430 Tulln an der Donau, Austria
| | - Mária Škrabišová
- Department of Biochemistry, Faculty of Science, Palacký University in Olomouc, 78371 Olomouc, Czech Republic
| |
Collapse
|
6
|
Vlaminck L, Vanden Berghen B, Vranken L, Goormachtig S. It takes three to tango: citizen, fundamental and applied science. TRENDS IN PLANT SCIENCE 2023; 28:491-494. [PMID: 36907695 DOI: 10.1016/j.tplants.2023.02.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Revised: 02/21/2023] [Accepted: 02/21/2023] [Indexed: 05/22/2023]
Abstract
Citizen science is an undervalued tool in a scientist's toolbox with the potential to go beyond primary data collection to strengthen fundamental and applied science. We call for the integration of these three disciplines to make agriculture sustainable and adaptive to climate change, with North-Western European soybean cultivation as showcase.
Collapse
Affiliation(s)
- Lena Vlaminck
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
| | - Birgit Vanden Berghen
- Division of Bio-economics, Department of Earth and Environmental Sciences, KU Leuven, 3000 Leuven, Belgium
| | - Liesbet Vranken
- Division of Bio-economics, Department of Earth and Environmental Sciences, KU Leuven, 3000 Leuven, Belgium
| | - Sofie Goormachtig
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium.
| |
Collapse
|