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Kreling SES, Reese EM, Cavalluzzi OM, Bozzi NB, Messinger R, Schell CJ, Long RA, Prugh LR. City divided: Unveiling family ties and genetic structuring of coyotes in Seattle. Mol Ecol 2024; 33:e17427. [PMID: 38837263 DOI: 10.1111/mec.17427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2024] [Revised: 05/02/2024] [Accepted: 05/13/2024] [Indexed: 06/07/2024]
Abstract
Linear barriers pose significant challenges for wildlife gene flow, impacting species persistence, adaptation, and evolution. While numerous studies have examined the effects of linear barriers (e.g., fences and roadways) on partitioning urban and non-urban areas, understanding their influence on gene flow within cities remains limited. Here, we investigated the impact of linear barriers on coyote (Canis latrans) population structure in Seattle, Washington, where major barriers (i.e., interstate highways and bodies of water) divide the city into distinct quadrants. Just under 1000 scats were collected to obtain genetic data between January 2021 and December 2022, allowing us to identify 73 individual coyotes. Notably, private allele analysis underscored limited interbreeding among quadrants. When comparing one quadrant to each other, there were up to 16 private alleles within a single quadrant, representing nearly 22% of the population allelic diversity. Our analysis revealed weak isolation by distance, and despite being a highly mobile species, genetic structuring was apparent between quadrants even with extremely short geographic distance between individual coyotes, implying that Interstate 5 and the Ship Canal act as major barriers. This study uses coyotes as a model species for understanding urban gene flow and its consequences in cities, a crucial component for bolstering conservation of rarer species and developing wildlife friendly cities.
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Affiliation(s)
- Samantha E S Kreling
- School of Environmental and Forest Sciences, University of Washington, Seattle, Washington, USA
| | - Ellen M Reese
- School of Environmental and Forest Sciences, University of Washington, Seattle, Washington, USA
| | - Olivia M Cavalluzzi
- School of Environmental and Forest Sciences, University of Washington, Seattle, Washington, USA
| | - Natalee B Bozzi
- School of Environmental and Forest Sciences, University of Washington, Seattle, Washington, USA
| | - Riley Messinger
- School of Environmental and Forest Sciences, University of Washington, Seattle, Washington, USA
| | - Christopher J Schell
- Department of Environmental Science, Policy, and Management, University of California-Berkeley, Berkeley, California, USA
| | | | - Laura R Prugh
- School of Environmental and Forest Sciences, University of Washington, Seattle, Washington, USA
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2
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Bouchez-Zacria M, Payne A, Girard S, Richomme C, Boschiroli ML, Marsot M, Durand B, Desvaux S. Spatial association of Mycobacterium bovis infection in cattle and badgers at the pasture interface in an endemic area in France. Prev Vet Med 2023; 220:106044. [PMID: 37865009 DOI: 10.1016/j.prevetmed.2023.106044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 10/02/2023] [Accepted: 10/06/2023] [Indexed: 10/23/2023]
Abstract
Despite control and surveillance programmes, Mycobacterium bovis, the main aetiologic agent of bovine tuberculosis (bTB), is still detected on cattle farms and in wildlife populations in France, especially in badgers in the French Côte-d'Or département. The aim of our study was to find out if infected badgers were trapped significantly closer to pastures of infected farms than non-infected badgers and, if so, to determine the most efficient distance around those pastures for badger trapping, particularly for surveillance purposes. We studied two subareas (southern and northern), chosen based on natural barriers to badger movements and according to the presence of pastures belonging to infected farms (POIFs) and infected or non-infected badgers. In each subarea, we computed the shortest distances D0 and D between badgers trapped a given year n between 2015 and 2019 (n = 59 infected and n = 1535 non-infected badgers for D0; n = 53 infected and n = 1476 non-infected badgers for D) and POIFs designated as infected between the year n - 4 and n + 1 (respectively n = 373 and n = 388 POIFs). D0 was calculated without considering spoligotypes, while D was calculated considering the possible epidemiological link between infected badgers and POIFs by using bTB spoligotype information. Then, we computed the observed mean and median of the D0 and D distances and used a bootstrap analysis to test if infected badgers were found significantly closer to POIFs than non-infected badgers. We observed that infection of badgers was not independent of distance from POIF in both subareas but distances (D0 or D) were different between the northern and southern subarea. In the northern subarea, which displays a mosaic landscape (mean and median D distances were respectively 612 m and 303 m for infected badgers), infected badgers indeed were trapped closer to POIFs, considering D0 and D. In the southern subarea, predominantly forested, infected badgers were significantly closer to POIFs than non-infected badgers when considering D0 but not for D (mean and median D distances were respectively 7148 m and 4831 m for infected badgers). These results will help to determine the most efficient distance from POIFs to trap badgers to determine their infection status in countryside landscapes. They also highlight the need to better understand the epidemiological systems at play in more forested landscapes where badgers may behave differently or other susceptible sympatric wild species might play a more important role in the circulation of M. bovis, both phenomena contributing to badger infection at greater distances from POIFs.
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Affiliation(s)
- Malika Bouchez-Zacria
- Independent Researcher, Audincthun, France; OFB (French Office for Biodiversity), Research and Scientific Support Direction, 01330 Birieux, France
| | - Ariane Payne
- OFB (French Office for Biodiversity), Research and Scientific Support Direction, Orléans, France
| | - Sébastien Girard
- DRAAF BFC (Food, Agriculture and Forest Regional Direction of Bourgogne Franche-Comté), 21078 Cedex Dijon, France
| | - Céline Richomme
- Anses, Nancy Laboratory for Rabies and Wildlife, 54220 Malzéville, France
| | | | - Maud Marsot
- Anses, Laboratory for Animal Health, University Paris-Est, Maisons-Alfort, France
| | - Benoit Durand
- Anses, Laboratory for Animal Health, University Paris-Est, Maisons-Alfort, France
| | - Stéphanie Desvaux
- OFB (French Office for Biodiversity), Research and Scientific Support Direction, 01330 Birieux, France.
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Bouchez-Zacria M, Ruette S, Richomme C, Lesellier S, Payne A, Boschiroli ML, Courcoul A, Durand B. Analysis of a multi-type resurgence of Mycobacterium bovis in cattle and badgers in Southwest France, 2007-2019. Vet Res 2023; 54:41. [PMID: 37138355 PMCID: PMC10158257 DOI: 10.1186/s13567-023-01168-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2022] [Accepted: 03/30/2023] [Indexed: 05/05/2023] Open
Abstract
Although control measures to tackle bovine tuberculosis (bTB) in cattle have been successful in many parts of Europe, this disease has not been eradicated in areas where Mycobacterium bovis circulates in multi-host systems. Here we analyzed the resurgence of 11 M. bovis genotypes (defined based on spoligotyping and MIRU-VNTR) detected in 141 farms between 2007 and 2019, in an area of Southwestern France where wildlife infection was also detected from 2012 in 65 badgers. We used a spatially-explicit model to reconstruct the simultaneous diffusion of the 11 genotypes in cattle farms and badger populations. Effective reproduction number R was estimated to be 1.34 in 2007-2011 indicating a self-sustained M. bovis transmission by a maintenance community although within-species Rs were both < 1, indicating that neither cattle nor badger populations acted as separate reservoir hosts. From 2012, control measures were implemented, and we observed a decrease of R below 1. Spatial contrasts of the basic reproduction ratio suggested that local field conditions may favor (or penalize) local spread of bTB upon introduction into a new farm. Calculation of generation time distributions showed that the spread of M. bovis has been more rapid from cattle farms (0.5-0.7 year) than from badger groups (1.3-2.4 years). Although eradication of bTB appears possible in the study area (since R < 1), the model suggests it is a long-term prospect, because of the prolonged persistence of infection in badger groups (2.9-5.7 years). Supplementary tools and efforts to better control bTB infection in badgers (including vaccination for instance) appear necessary.
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Affiliation(s)
- Malika Bouchez-Zacria
- Laboratory for Animal Health, French Agency for Food, Environmental and Occupational Health and Safety (ANSES), University Paris-Est, 14 Rue Pierre Et Marie Curie, 94700, Maisons-Alfort, France
- Independent Researcher, Audincthun, France
| | - Sandrine Ruette
- French Office for Biodiversity (OFB), Research and Scientific Support Direction, Vincennes, France
| | - Céline Richomme
- Nancy Laboratory for Rabies and Wildlife, French Agency for Food, Environmental and Occupational Health and Safety (ANSES), Malzéville, France
| | - Sandrine Lesellier
- Nancy Laboratory for Rabies and Wildlife, French Agency for Food, Environmental and Occupational Health and Safety (ANSES), Malzéville, France
| | - Ariane Payne
- French Office for Biodiversity (OFB), Research and Scientific Support Direction, Vincennes, France
| | - Maria-Laura Boschiroli
- Laboratory for Animal Health, French Agency for Food, Environmental and Occupational Health and Safety (ANSES), University Paris-Est, 14 Rue Pierre Et Marie Curie, 94700, Maisons-Alfort, France
- Tuberculosis Reference Laboratory, Bacterial Zoonosis Unit, Laboratory for Animal Health, Paris-Est University, ANSES, 94700, Maisons‑Alfort, France
| | - Aurélie Courcoul
- Laboratory for Animal Health, French Agency for Food, Environmental and Occupational Health and Safety (ANSES), University Paris-Est, 14 Rue Pierre Et Marie Curie, 94700, Maisons-Alfort, France
- Oniris, Nantes, France
| | - Benoit Durand
- Laboratory for Animal Health, French Agency for Food, Environmental and Occupational Health and Safety (ANSES), University Paris-Est, 14 Rue Pierre Et Marie Curie, 94700, Maisons-Alfort, France.
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Barroso P, Breslin P, McGrath G, Madden JM, Tratalos JA, More SJ, Ryan E, Byrne AW, Barrett D. Is there an association between road building and bovine tuberculosis herd risk? A three time-point study in Ireland, 2011-2019. Prev Vet Med 2021; 198:105542. [PMID: 34798305 DOI: 10.1016/j.prevetmed.2021.105542] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Revised: 11/09/2021] [Accepted: 11/11/2021] [Indexed: 10/19/2022]
Abstract
Bovine tuberculosis (bTB) is a chronic infectious disease caused by Mycobacterium bovis which results in a significant economic cost to cattle industries and governments where it is endemic. In Ireland, the European badger is the main wildlife reservoir of infection. In this study, we investigated whether (motorway) road construction was associated with an increased risk of bTB in associated cattle herds. For this study, we considered three observation periods: pre-construction (2011-2014), construction (2015-2017) and post-construction (2018-2019). We selected 1543 herds situated, based on proximity, between >50 m and <5 km of the roadworks, and extracted information about their herd-size, herd-type, inward animal movements, bTB history, and distance to the roadworks. Generalized linear mixed models were performed, whose outcome were whether a herd experienced a bTB breakdown with ≥1 or ≥3 standard reactor/s, respectively. Herds located at a distance of >3 km from the roadworks were found to be at reduced risk of a bTB breakdown over the construction period compared with those situated within 1 km of the roadworks for ≥1 reactor/s (>3 km and construction vs. <1 km: OR: 0.595, 95 % Confidence Interval (CI): 0.354-0.999) or ≥3 reactors (>3 km and construction vs. <1 km: OR: 0.431, 95 % CI: 0.174-1.067). Other previously reported risk factors such as inward movements, herd-size and herd-type were also associated with bTB risk in the final models (≥1 reactor/s and ≥3 reactors). These findings appear to be consistent with bTB breakdowns being a consequence as opposed to coincident to road construction, given the temporal and spatial consistency of the evidence. The potential for badger social group disturbance leading to the spatial spread of infection to cattle herds, as previously described in the United Kingdom, could be a hypothetical mechanism to explain these findings. However, our findings are not consistent with previous Irish studies, including recent work from another road construction project, albeit running alongside and cross over an existing road rather than construction of a new road as in this case, or experiences from national targeted badger removal. Further research is warranted to verify this pattern occurs elsewhere, and the underlying biological mechanism. Until further data are available, we recommend that badgers are vaccinated, as a precautionary measure, in advance of the commencement of major roadworks.
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Affiliation(s)
- Patricia Barroso
- Grupo SaBio, Instituto de Investigación en Recursos Cinegéticos (UCLM-CSIC), Ciudad Real, Spain.
| | - Philip Breslin
- Ruminant Animal Health Division, Department of Agriculture, Food and the Marine (DAFM), Backweston, Co. Dublin, Ireland
| | - Guy McGrath
- Centre for Veterinary Epidemiology and Risk Analysis (CVERA), School of Veterinary Medicine, University College Dublin, Belfield, Dublin D04 W6F6, Ireland
| | - Jamie M Madden
- Centre for Veterinary Epidemiology and Risk Analysis (CVERA), School of Veterinary Medicine, University College Dublin, Belfield, Dublin D04 W6F6, Ireland
| | - Jamie A Tratalos
- Centre for Veterinary Epidemiology and Risk Analysis (CVERA), School of Veterinary Medicine, University College Dublin, Belfield, Dublin D04 W6F6, Ireland
| | - Simon J More
- Centre for Veterinary Epidemiology and Risk Analysis (CVERA), School of Veterinary Medicine, University College Dublin, Belfield, Dublin D04 W6F6, Ireland
| | - Eoin Ryan
- Ruminant Animal Health Division, Department of Agriculture, Food and the Marine (DAFM), Backweston, Co. Dublin, Ireland
| | - Andrew W Byrne
- One Health Scientific Support Unit, National Disease Control Centre (NDCC), Department of Agriculture, Food and the Marine (DAFM), Agriculture House, Dublin 2, Ireland
| | - Damien Barrett
- One Health Scientific Support Unit, National Disease Control Centre (NDCC), Department of Agriculture, Food and the Marine (DAFM), Agriculture House, Dublin 2, Ireland
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5
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Gaughran A, Mullen E, MacWhite T, Maher P, Kelly DJ, Kelly R, Good M, Marples NM. Badger territoriality maintained despite disturbance of major road construction. PLoS One 2021; 16:e0242586. [PMID: 34478443 PMCID: PMC8415604 DOI: 10.1371/journal.pone.0242586] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Accepted: 08/19/2021] [Indexed: 11/23/2022] Open
Abstract
Road ecology has traditionally focused on the impact of in-situ and functional roads on wildlife. However, road construction also poses a major, yet understudied, threat and the implications for key aspects of animal behaviour are unknown. Badgers (Meles meles) have been implicated in the transmission of tuberculosis to cattle. There are concerns that environmental disturbances, including major road construction, can disrupt badger territoriality, promoting the spread of the disease to cattle. To address these knowledge gaps the ranging behaviour of a medium-density Irish badger population was monitored using GPS-tracking collars before, during, and after a major road realignment project that bisected the study area. We estimated badgers' home range sizes, nightly distances travelled, and the distance and frequency of extra-territorial excursions during each phase of the study and quantified any changes to these parameters. We show that road construction had a very limited effect on ranging behaviour. A small increase in nightly distance during road construction did not translate into an increase in home range size, nor an increase in the distance or frequency of extra-territorial excursions during road construction. In addition, suitable mitigation measures to prevent badger deaths appeared to ensure that normal patterns of ranging behaviour continued once the new road was in place. We recommend that continuous badger-proof fencing be placed along the entire length of new major roads, in combination with appropriately sited underpasses. Our analysis supports the view that road construction did not cause badgers to change their ranging behaviour in ways likely to increase the spread of tuberculosis.
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Affiliation(s)
- Aoibheann Gaughran
- Department of Zoology, School of Natural Sciences, Trinity College Dublin, Dublin, Ireland
| | - Enda Mullen
- Department of Housing, Local Government and Heritage, National Parks and Wildlife Service, Dublin, Ireland
| | - Teresa MacWhite
- Department of Agriculture, Food and the Marine, Dublin, Ireland
| | - Peter Maher
- Department of Agriculture, Food and the Marine, Dublin, Ireland
| | - David J. Kelly
- Department of Zoology, School of Natural Sciences, Trinity College Dublin, Dublin, Ireland
| | - Ruth Kelly
- Agri-Food and Biosciences Institute, Northern Ireland, Belfast, United Kingdom
| | - Margaret Good
- Department of Zoology, School of Natural Sciences, Trinity College Dublin, Dublin, Ireland
| | - Nicola M. Marples
- Department of Zoology, School of Natural Sciences, Trinity College Dublin, Dublin, Ireland
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6
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Figueiredo-Vázquez C, Lourenço A, Velo-Antón G. Riverine barriers to gene flow in a salamander with both aquatic and terrestrial reproduction. Evol Ecol 2021. [DOI: 10.1007/s10682-021-10114-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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7
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Burbrink FT, Gehara M, McKelvy AD, Myers EA. Resolving spatial complexities of hybridization in the context of the gray zone of speciation in North American ratsnakes (Pantherophis obsoletus complex). Evolution 2021; 75:260-277. [PMID: 33346918 DOI: 10.1111/evo.14141] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Revised: 10/01/2020] [Accepted: 11/17/2020] [Indexed: 01/04/2023]
Abstract
Inferring the history of divergence between species in a framework that permits the presence of gene flow has been crucial for characterizing the "gray zone" of speciation, which is the period of time where lineages have diverged but have not yet achieved strict reproductive isolation. However, estimates of both divergence times and rates of gene flow often ignore spatial information, for example when considering the location and width of hybrid zones with respect to changes in the environment between lineages. Using population genomic data from the North American ratsnake complex (Pantherophis obsoletus), we connected phylogeographic estimates of lineage structure, migration, historical demography, and timing of divergence with hybrid zone dynamics. We examined the spatial context of diversification by linking migration and timing of divergence to the location and widths of hybrid zones. Artificial neural network approaches were applied to understand how landscape features and past climate have influenced population genetic structure among these lineages. We found that rates of migration between lineages were associated with the overall width of hybrid zones. Timing of divergence was not related to migration rate or hybrid zone width across species pairs but may be related to the number of alleles weakly introgressing through hybrid zones. This research underscores how incomplete reproductive isolation can be better understood by considering differential allelic introgression and the effects of historical and contemporary landscape features on the formation of lineages as well as overall genomic estimates of migration rates through time.
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Affiliation(s)
- Frank T Burbrink
- Department of Herpetology, The American Museum of Natural History, Central Park West and 79th Street, New York, New York, 10024
| | - Marcelo Gehara
- Department of Biological Sciences, Rutgers University Newark, 195 University Ave, Newark, New Jersey, 07102
| | - Alexander D McKelvy
- Department of Biology, The Graduate School and Center, City University of New York, New York, New York, 10016
| | - Edward A Myers
- Department of Herpetology, The American Museum of Natural History, Central Park West and 79th Street, New York, New York, 10024.,Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC
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8
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Skorupski J. Fifty Years of Research on European Mink Mustela lutreola L., 1761 Genetics: Where Are We Now in Studies on One of the Most Endangered Mammals? Genes (Basel) 2020; 11:E1332. [PMID: 33187363 PMCID: PMC7696698 DOI: 10.3390/genes11111332] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Revised: 10/28/2020] [Accepted: 11/06/2020] [Indexed: 02/06/2023] Open
Abstract
The purpose of this review is to present the current state of knowledge about the genetics of European mink Mustela lutreola L., 1761, which is one of the most endangered mammalian species in the world. This article provides a comprehensive description of the studies undertaken over the last 50 years in terms of cytogenetics, molecular genetics, genomics (including mitogenomics), population genetics of wild populations and captive stocks, phylogenetics, phylogeography, and applied genetics (including identification by genetic methods, molecular ecology, and conservation genetics). An extensive and up-to-date review and critical analysis of the available specialist literature on the topic is provided, with special reference to conservation genetics. Unresolved issues are also described, such as the standard karyotype, systematic position, and whole-genome sequencing, and hotly debated issues are addressed, like the origin of the Southwestern population of the European mink and management approaches of the most distinct populations of the species. Finally, the most urgent directions of future research, based on the research questions arising from completed studies and the implementation of conservation measures to save and restore M. lutreola populations, are outlined. The importance of the popularization of research topics related to European mink genetics among scientists is highlighted.
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Affiliation(s)
- Jakub Skorupski
- Institute of Marine and Environmental Sciences, University of Szczecin, Adama Mickiewicza 16 St., 70-383 Szczecin, Poland; ; Tel.: +48-914-441-685
- Polish Society for Conservation Genetics LUTREOLA, Maciejkowa 21 St., 71-784 Szczecin, Poland
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9
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Jacquier M, Vandel JM, Léger F, Duhayer J, Pardonnet S, Queney G, Kaerle C, Say L, Ruette S, Devillard S. Population genetic structures at multiple spatial scales: importance of social groups in European badgers. J Mammal 2020. [DOI: 10.1093/jmammal/gyaa090] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
AbstractPopulation viability and metapopulation dynamics are strongly affected by gene flow. Identifying ecological correlates of genetic structure and gene flow in wild populations is therefore a major issue both in evolutionary ecology and species management. Studying the genetic structure of populations also enables identification of the spatial scale at which most gene flow occurs, hence the scale of the functional connectivity, which is of paramount importance for species ecology. In this study, we examined the genetic structure of a social, continuously distributed mammal, the European badger (Meles meles), both at large spatial scales (among populations) and fine (within populations) spatial scales. The study was carried out in 11 sites across France utilizing a noninvasive hair trapping protocol at 206 monitored setts. We identified 264 badgers genotyped at 24 microsatellite DNA loci. At the large scale, we observed high and significant genetic differentiation among populations (global Fst = 0.139; range of pairwise Fst [0.046–0.231]) that was not related to the geographic distance among sites, suggesting few large-scale dispersal events. Within populations, we detected a threshold value below which badgers were genetically close (< 400 m), highlighting that sociality is the major structuring process within badger populations at the fine scale.
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Affiliation(s)
- Mickaël Jacquier
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, UMR5558 LBBE, Villeurbanne, France
- Office Français de la Biodiversité, Unité-PAD, Montfort, Birieux, France
| | - Jean-Michel Vandel
- Office Français de la Biodiversité, Unité-PAD, Montfort, Birieux, France
| | - François Léger
- Office Français de la Biodiversité, Unité-PAD, Gerstheim, France
| | - Jeanne Duhayer
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, UMR5558 LBBE, Villeurbanne, France
| | - Sylvia Pardonnet
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, UMR5558 LBBE, Villeurbanne, France
| | | | | | - Ludovic Say
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, UMR5558 LBBE, Villeurbanne, France
| | - Sandrine Ruette
- Office Français de la Biodiversité, Unité-PAD, Montfort, Birieux, France
| | - Sébastien Devillard
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, UMR5558 LBBE, Villeurbanne, France
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10
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Rutten A, Cox K, Scheppers T, Broecke BV, Leirs H, Casaer J. Analysing the recolonisation of a highly fragmented landscape by wild boar using a landscape genetic approach. WILDLIFE BIOLOGY 2019. [DOI: 10.2981/wlb.00542] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Affiliation(s)
| | - Karen Cox
- K. Cox, Res. Inst. for Nature and Forest (INBO), Geraardsbergen, Belgium
| | | | - Bram Vanden Broecke
- B. Vanden Broecke and H. Leirs, Dept of Biology, Univ. of Antwerp, Universiteitsplein 1, BE-2610 Antwerp, Belgium
| | - Herwig Leirs
- B. Vanden Broecke and H. Leirs, Dept of Biology, Univ. of Antwerp, Universiteitsplein 1, BE-2610 Antwerp, Belgium
| | - Jim Casaer
- J. Casaer, Res. Inst. for Nature and Forest (INBO), Brussels, Belgium
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11
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Beer SD, Cornett S, Austerman P, Trometer B, Hoffman T, Bartron ML. Genetic diversity, admixture, and hatchery influence in Brook Trout ( Salvelinus fontinalis) throughout western New York State. Ecol Evol 2019; 9:7455-7479. [PMID: 31346416 PMCID: PMC6635958 DOI: 10.1002/ece3.5237] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Revised: 03/22/2019] [Accepted: 04/16/2019] [Indexed: 02/06/2023] Open
Abstract
Although Brook Trout are distributed across most of eastern North America, population numbers have declined in many regions due to habitat loss, climate change, and competition with non-native species. In New York State, Brook Trout habitat has been substantially reduced, with many areas showing complete extirpation of Brook Trout populations, predominantly in the western portion of the state. Small, fragmented populations are at risk of genetic diversity loss, inbreeding depression, and reduced fitness, leading to a greater potential for local extirpation. Genetic monitoring is a practical tool that can facilitate further conservation-decision making regarding small populations. In this study, we used 12 microsatellite loci to examine 3,436 sampled Brook Trout, representing 75 sites from the Allegheny, Erie/Niagara, Genesee, Oswego, Lake Ontario, and Susquehanna drainage basins throughout western New York State. Three Brook Trout hatchery strains were also genetically characterized to evaluate the degree of hatchery introgression between wild populations and hatchery strains stocked in the region. Overall, estimates of genetic diversity varied widely: Allelic richness ranged from 2.23 to 7.485, and expected heterozygosity ranged from 0.402 to 0.766. As observed for Brook Trout in other regions, we found a high degree of genetic differentiation among populations, with all comparisons except one showing significant F ST values. Hatchery introgression was found to be minimal, with estimates ranging from 1.96% to 3.10% of wild individuals exhibiting membership proportions to a hatchery strain cluster exceeding 10% (q ≥ 0.10). Results from this investigation can be used to prioritize management efforts for Brook Trout in western New York State and act as a baseline to monitor future population trends.
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Affiliation(s)
| | - Scott Cornett
- New York State Department of Environmental ConservationAlleganyNew York
| | - Peter Austerman
- New York State Department of Environmental ConservationAvonNew York
| | - Betsy Trometer
- U.S. Fish and Wildlife ServiceLower Great Lakes Fish and Wildlife Conservation OfficeBasomNew York
| | - Thomas Hoffman
- U.S. Fish and Wildlife ServiceLower Great Lakes Fish and Wildlife Conservation OfficeBasomNew York
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12
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Berkman LK, Frair JL, Marquardt PE, Donner DM, Kilgo JC, Whipps CM. Spatial genetic analysis of coyotes in New York State. WILDLIFE SOC B 2019. [DOI: 10.1002/wsb.960] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Leah K. Berkman
- The State University of New York College of Environmental Science and Forestry1 Forestry DriveSyracuseNY13210USA
| | - Jacqueline L. Frair
- The State University of New York College of Environmental Science and Forestry1 Forestry DriveSyracuseNY13210USA
| | - Paula E. Marquardt
- U.S. Department of Agriculture Forest ServiceNorthern Research Station5985 Highway KRhinelanderWI54501USA
| | - Deahn M. Donner
- U.S. Department of Agriculture Forest ServiceNorthern Research Station5985 Highway KRhinelanderWI54501USA
| | - John C. Kilgo
- U.S. Department of Agriculture Forest ServiceSouthern Research StationP.O. Box 700New EllentonSC29809USA
| | - Christopher M. Whipps
- The State University of New York College of Environmental Science and Forestry1 Forestry DriveSyracuseNY13210USA
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13
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Sainsbury KA, Shore RF, Schofield H, Croose E, Campbell RD, Mcdonald RA. Recent history, current status, conservation and management of native mammalian carnivore species in Great Britain. Mamm Rev 2019. [DOI: 10.1111/mam.12150] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Katherine A. Sainsbury
- Environment and Sustainability InstituteUniversity of Exeter Penryn Campus Penryn TR10 9FE UK
| | - Richard F. Shore
- Centre for Ecology & HydrologyLancaster Environment Centre Lancaster LA1 4AP UK
| | - Henry Schofield
- The Vincent Wildlife Trust 3 & 4 Bronsil Courtyard, Eastnor Ledbury HR8 1EP UK
| | - Elizabeth Croose
- The Vincent Wildlife Trust 3 & 4 Bronsil Courtyard, Eastnor Ledbury HR8 1EP UK
| | | | - Robbie A. Mcdonald
- Environment and Sustainability InstituteUniversity of Exeter Penryn Campus Penryn TR10 9FE UK
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14
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Do roads act as a barrier to gene flow of subterranean small mammals? A case study with Ctenomys minutus. CONSERV GENET 2019. [DOI: 10.1007/s10592-018-01139-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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15
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Habitat suitability vs landscape connectivity determining roadkill risk at a regional scale: a case study on European badger (Meles meles). EUR J WILDLIFE RES 2019. [DOI: 10.1007/s10344-018-1241-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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16
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Pelletier TA, Carstens BC. Geographical range size and latitude predict population genetic structure in a global survey. Biol Lett 2018; 14:rsbl.2017.0566. [PMID: 29343561 DOI: 10.1098/rsbl.2017.0566] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Accepted: 12/11/2017] [Indexed: 12/31/2022] Open
Abstract
While genetic diversity within species is influenced by both geographical distance and environmental gradients, it is unclear what other factors are likely to promote population genetic structure. Using a machine learning framework and georeferenced DNA sequences from more than 8000 species, we demonstrate that geographical attributes of the species range, including total size, latitude and elevation, are the most important predictors of which species are likely to contain structured genetic variation. While latitude is well known as an important predictor of biodiversity, our work suggests that it also plays a key role in shaping diversity within species.
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Affiliation(s)
- Tara A Pelletier
- Department of Evolution, Ecology, and Organismal Biology, Ohio State University, 318 W. 12th Avenue, Columbus, OH 43210-1293, USA
| | - Bryan C Carstens
- Department of Evolution, Ecology, and Organismal Biology, Ohio State University, 318 W. 12th Avenue, Columbus, OH 43210-1293, USA
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17
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Guerrero J, Byrne AW, Lavery J, Presho E, Kelly G, Courcier EA, O'Keeffe J, Fogarty U, O'Meara DB, Ensing D, McCormick C, Biek R, Skuce RA, Allen AR. The population and landscape genetics of the European badger ( Meles meles) in Ireland. Ecol Evol 2018; 8:10233-10246. [PMID: 30397461 PMCID: PMC6206220 DOI: 10.1002/ece3.4498] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Revised: 07/20/2018] [Accepted: 07/27/2018] [Indexed: 01/06/2023] Open
Abstract
The population genetic structure of free-ranging species is expected to reflect landscape-level effects. Quantifying the role of these factors and their relative contribution often has important implications for wildlife management. The population genetics of the European badger (Meles meles) have received considerable attention, not least because the species acts as a potential wildlife reservoir for bovine tuberculosis (bTB) in Britain and Ireland. Herein, we detail the most comprehensive population and landscape genetic study of the badger in Ireland to date-comprised of 454 Irish badger samples, genotyped at 14 microsatellite loci. Bayesian and multivariate clustering methods demonstrated continuous clinal variation across the island, with potentially distinct differentiation observed in Northern Ireland. Landscape genetic analyses identified geographic distance and elevation as the primary drivers of genetic differentiation, in keeping with badgers exhibiting high levels of philopatry. Other factors hypothesized to affect gene flow, including earth worm habitat suitability, land cover type, and the River Shannon, had little to no detectable effect. By providing a more accurate picture of badger population structure and the factors effecting it, these data can guide current efforts to manage the species in Ireland and to better understand its role in bTB.
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Affiliation(s)
- Jimena Guerrero
- Centre D'Ecologie Fonctionelle et EvolutiveCEFE‐CNRSMontpellierFrance
| | - Andrew W. Byrne
- Veterinary Sciences DivisionAgri‐Food and Biosciences Institute (AFBI)BelfastUK
| | - John Lavery
- Veterinary Sciences DivisionAgri‐Food and Biosciences Institute (AFBI)BelfastUK
| | - Eleanor Presho
- Veterinary Sciences DivisionAgri‐Food and Biosciences Institute (AFBI)BelfastUK
| | - Gavin Kelly
- Veterinary Sciences DivisionAgri‐Food and Biosciences Institute (AFBI)BelfastUK
| | - Emily A. Courcier
- Department of Agriculture, Environment and Rural Affairs Northern Ireland (DAERA‐NI)Veterinary Epidemiology UnitBelfastUK
| | - James O'Keeffe
- Department of Agriculture Food and the Marine (DAFM)DublinIreland
| | | | - Denise B. O'Meara
- Department of Chemical and Life SciencesWaterford Institute of TechnologyWaterfordIreland
| | - Dennis Ensing
- Agriculture, Sustainable Agri‐Food Sciences DivisionAgri‐Food and Biosciences InstituteBelfastUK
| | - Carl McCormick
- Veterinary Sciences DivisionAgri‐Food and Biosciences Institute (AFBI)BelfastUK
| | - Roman Biek
- Institute of Biodiversity Animal Health and Comparative MedicineUniversity of GlasgowGlasgowUK
| | - Robin A. Skuce
- Veterinary Sciences DivisionAgri‐Food and Biosciences Institute (AFBI)BelfastUK
| | - Adrian R. Allen
- Veterinary Sciences DivisionAgri‐Food and Biosciences Institute (AFBI)BelfastUK
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18
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Leedale AE, Sharp SP, Simeoni M, Robinson EJH, Hatchwell BJ. Fine-scale genetic structure and helping decisions in a cooperatively breeding bird. Mol Ecol 2018. [DOI: 10.1111/mec.14553] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Amy E. Leedale
- Department of Animal and Plant Sciences; University of Sheffield; Sheffield UK
| | - Stuart P. Sharp
- Lancaster Environment Centre; Lancaster University; Lancaster UK
| | - Michelle Simeoni
- Department of Animal and Plant Sciences; University of Sheffield; Sheffield UK
| | - Elva J. H. Robinson
- York Centre for Complex Systems Analysis & Department of Biology; University of York; York UK
| | - Ben J. Hatchwell
- Department of Animal and Plant Sciences; University of Sheffield; Sheffield UK
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19
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Sun Z, Pan T, Wang H, Pang M, Zhang B. Yangtze River, an insignificant genetic boundary in tufted deer ( Elaphodus cephalophus): the evidence from a first population genetics study. PeerJ 2016; 4:e2654. [PMID: 27843712 PMCID: PMC5103815 DOI: 10.7717/peerj.2654] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2016] [Accepted: 10/04/2016] [Indexed: 12/02/2022] Open
Abstract
Great rivers were generally looked at as the geographical barrier to gene flow for many taxonomic groups. The Yangtze River is the third largest river in the world, and flows across South China and into the East China Sea. Up until now, few studies have been carried out to evaluate its effect as a geographical barrier. In this study, we attempted to determine the barrier effect of the Yangtze River on the tufted deer (Elaphodus cephalophus) using the molecular ecology approach. Using mitochondrial DNA control region (CR) sequences and 13 nuclear microsatellite loci, we explored the genetic structure and gene flow in two adjacent tufted deer populations (Dabashan and Wulingshan populations), which are separated by the Yangtze River. Results indicated that there are high genetic diversity levels in the two populations, but no distinguishable haplotype group or potential genetic cluster was detected which corresponded to specific geographical population. At the same time, high gene flow was observed between Wulingshan and Dabashan populations. The tufted deer populations experienced population decrease from 0.3 to 0.09 Ma BP, then followed by a distinct population increase. A strong signal of recent population decline (T = 4,396 years) was detected in the Wulingshan population by a Markov-Switching Vector Autoregressions(MSVAR) process population demography analysis. The results indicated that the Yangtze River may not act as an effective barrier to gene flow in the tufted deer. Finally, we surmised that the population demography of the tufted deer was likely affected by Pleistocene climate fluctuations and ancient human activities.
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Affiliation(s)
- Zhonglou Sun
- School of Life Sciences, Anhui University, Hefei, Anhui, China
| | - Tao Pan
- School of Life Sciences, Anhui University, Hefei, Anhui, China
| | - Hui Wang
- School of Life Sciences, Anhui University, Hefei, Anhui, China
| | - Mujia Pang
- School of Life Sciences, Anhui University, Hefei, Anhui, China
| | - Baowei Zhang
- School of Life Sciences, Anhui University, Hefei, Anhui, China.,School of Biosciences, Cardiff University, Cardiff, United Kingdom
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20
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Grilo C, Del Cerro I, Centeno-Cuadros A, Ramiro V, Román J, Molina-Vacas G, Fernández-Aguilar X, Rodríguez J, Porto-Peter F, Fonseca C, Revilla E, Godoy JA. Heterogeneous road networks have no apparent effect on the genetic structure of small mammal populations. THE SCIENCE OF THE TOTAL ENVIRONMENT 2016; 565:706-713. [PMID: 27219505 DOI: 10.1016/j.scitotenv.2016.05.074] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2016] [Revised: 05/11/2016] [Accepted: 05/11/2016] [Indexed: 06/05/2023]
Abstract
Roads are widely recognized to represent a barrier to individual movements and, conversely, verges can act as potential corridors for the dispersal of many small mammals. Both barrier and corridor effects should generate a clear spatial pattern in genetic structure. Nevertheless, the effect of roads on the genetic structure of small mammal populations still remains unclear. In this study, we examine the barrier effect that different road types (4-lane highway, 2-lane roads and single-lane unpaved roads) may have on the population genetic structure of three species differing in relevant life history traits: southern water vole Arvicola sapidus, the Mediterranean pine vole Microtus duodecimcostatus and the Algerian mouse Mus spretus. We also examine the corridor effect of highway verges on the Mediterranean pine vole and the Algerian mouse. We analysed the population structure through pairwise estimates of FST among subpopulations bisected by roads, identified genetic clusters through Bayesian assignment approaches, and used simple and partial Mantel tests to evaluate the relative barrier or corridor effect of roads. No strong evidences were found for an effect of roads on population structure of these three species. The barrier effect of roads seems to be site-specific and no corridor effect of verges was found for the pine vole and Algerian mouse populations. The lack of consistent results among species and for each road type lead us to believe that the ability of individual dispersers to use those crossing structures or the habitat quality in the highway verges may have a relatively higher influence on gene flow among populations than the presence of crossing structures per se. Further research should include microhabitat analysis and the estimates of species abundance to understand the mechanisms that underlie the genetic structure observed at some sites.
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Affiliation(s)
- Clara Grilo
- Departamento de Biología de la Conservación, Estación Biológica de Doñana (EBD-CSIC), Calle Américo Vespucio s/n, E-41092 Sevilla, Spain; Centro Brasileiro de Estudos em Ecologia de Estradas/Setor Ecologia, Departamento de Biologia, Universidade Federal de Lavras, Campus Universitário, 37200-000 Lavras, Minas Gerais, Brazil.
| | - Irene Del Cerro
- Department of Biology & CESAM, University of Aveiro, Campus de Santiago, Aveiro, Portugal.
| | - Alejandro Centeno-Cuadros
- Department of Molecular Biology and Biochemical Engineering, University Pablo de Olavide, Sevilla, Spain.
| | - Victor Ramiro
- Universidade de Lisboa, Fundação da Faculdade de Ciências, C2 5º 1749-016 Lisboa, Portugal.
| | - Jacinto Román
- Departamento de Biología de la Conservación, Estación Biológica de Doñana (EBD-CSIC), Calle Américo Vespucio s/n, E-41092 Sevilla, Spain.
| | - Guillem Molina-Vacas
- Universidade de Lisboa, Fundação da Faculdade de Ciências, C2 5º 1749-016 Lisboa, Portugal.
| | | | - Juan Rodríguez
- Universidade de Lisboa, Fundação da Faculdade de Ciências, C2 5º 1749-016 Lisboa, Portugal.
| | - Flávia Porto-Peter
- Universidade de Lisboa, Fundação da Faculdade de Ciências, C2 5º 1749-016 Lisboa, Portugal.
| | - Carlos Fonseca
- Department of Biology & CESAM, University of Aveiro, Campus de Santiago, Aveiro, Portugal.
| | - Eloy Revilla
- Departamento de Biología de la Conservación, Estación Biológica de Doñana (EBD-CSIC), Calle Américo Vespucio s/n, E-41092 Sevilla, Spain.
| | - José A Godoy
- Departamento de Biología de la Conservación, Estación Biológica de Doñana (EBD-CSIC), Calle Américo Vespucio s/n, E-41092 Sevilla, Spain.
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21
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Russo IRM, Sole CL, Barbato M, von Bramann U, Bruford MW. Landscape determinants of fine-scale genetic structure of a small rodent in a heterogeneous landscape (Hluhluwe-iMfolozi Park, South Africa). Sci Rep 2016; 6:29168. [PMID: 27406468 PMCID: PMC4942783 DOI: 10.1038/srep29168] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2015] [Accepted: 06/13/2016] [Indexed: 12/05/2022] Open
Abstract
Small mammals provide ecosystem services, acting, for example, as pollinators and seed dispersers. In addition, they are also disease reservoirs that can be detrimental to human health and they can also act as crop pests. Knowledge of their dispersal preferences is therefore useful for population management and landscape planning. Genetic data were used alongside landscape data to examine the influence of the landscape on the demographic connectedness of the Natal multimammate mouse (Mastomys natalensis) and to identify landscape characteristics that influence the genetic structure of this species across a spatially and temporally varying environment. The most significant landscape features shaping gene flow were aspect, vegetation cover, topographic complexity (TC) and rivers, with western facing slopes, topographic complexity and rivers restricting gene flow. In general, thicket vegetation was correlated with increased gene flow. Identifying features of the landscape that facilitate movement/dispersal in M. natalensis potentially has application for other small mammals in similar ecosystems. As the primary reservoir host of the zoonotic Lassa virus, a landscape genetics approach may have applications in determining areas of high disease risk to humans. Identifying these landscape features may also be important in crop management due to damage by rodent pests.
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Affiliation(s)
- Isa-Rita M Russo
- Cardiff School of Biosciences, Sir Martin Evans Building, Cardiff University, Museum Avenue, Cardiff, CF10 3AX United Kingdom
| | - Catherine L Sole
- Department of Zoology and Entomology, University of Pretoria, Private Bag X20, Hatfield, 0028 South Africa
| | - Mario Barbato
- Cardiff School of Biosciences, Sir Martin Evans Building, Cardiff University, Museum Avenue, Cardiff, CF10 3AX United Kingdom
| | - Ullrich von Bramann
- Technische Universität Braunschweig, Institut für Geosysteme und Bioindikation, Langer Kamp 19c, Braunschweig, 38106 Germany
| | - Michael W Bruford
- Cardiff School of Biosciences, Sir Martin Evans Building, Cardiff University, Museum Avenue, Cardiff, CF10 3AX United Kingdom
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22
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Amaral KE, Palace M, O'Brien KM, Fenderson LE, Kovach AI. Anthropogenic Habitats Facilitate Dispersal of an Early Successional Obligate: Implications for Restoration of an Endangered Ecosystem. PLoS One 2016; 11:e0148842. [PMID: 26954014 PMCID: PMC4783018 DOI: 10.1371/journal.pone.0148842] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2015] [Accepted: 01/25/2016] [Indexed: 01/15/2023] Open
Abstract
Landscape modification and habitat fragmentation disrupt the connectivity of natural landscapes, with major consequences for biodiversity. Species that require patchily distributed habitats, such as those that specialize on early successional ecosystems, must disperse through a landscape matrix with unsuitable habitat types. We evaluated landscape effects on dispersal of an early successional obligate, the New England cottontail (Sylvilagus transitionalis). Using a landscape genetics approach, we identified barriers and facilitators of gene flow and connectivity corridors for a population of cottontails in the northeastern United States. We modeled dispersal in relation to landscape structure and composition and tested hypotheses about the influence of habitat fragmentation on gene flow. Anthropogenic and natural shrubland habitats facilitated gene flow, while the remainder of the matrix, particularly development and forest, impeded gene flow. The relative influence of matrix habitats differed between study areas in relation to a fragmentation gradient. Barrier features had higher explanatory power in the more fragmented site, while facilitating features were important in the less fragmented site. Landscape models that included a simultaneous barrier and facilitating effect of roads had higher explanatory power than models that considered either effect separately, supporting the hypothesis that roads act as both barriers and facilitators at all spatial scales. The inclusion of LiDAR-identified shrubland habitat improved the fit of our facilitator models. Corridor analyses using circuit and least cost path approaches revealed the importance of anthropogenic, linear features for restoring connectivity between the study areas. In fragmented landscapes, human-modified habitats may enhance functional connectivity by providing suitable dispersal conduits for early successional specialists.
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Affiliation(s)
- Katrina E Amaral
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, New Hampshire, United States of America
| | - Michael Palace
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, New Hampshire, United States of America.,Institute for the Study of Earth, Oceans, and Space, University of New Hampshire, Durham, New Hampshire, United States of America
| | - Kathleen M O'Brien
- United States Fish and Wildlife Service, Rachel Carson National Wildlife Refuge, Wells, Maine, United States of America
| | - Lindsey E Fenderson
- United States Fish and Wildlife Service, Northeast Fishery Center, Conservation Genetics Lab, Lamar, Pennsylvania, United States of America
| | - Adrienne I Kovach
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, New Hampshire, United States of America
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23
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Kierepka EM, Latch EK. Fine-scale landscape genetics of the American badger (Taxidea taxus): disentangling landscape effects and sampling artifacts in a poorly understood species. Heredity (Edinb) 2016; 116:33-43. [PMID: 26243136 PMCID: PMC4675871 DOI: 10.1038/hdy.2015.67] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2014] [Revised: 06/05/2015] [Accepted: 06/12/2015] [Indexed: 11/09/2022] Open
Abstract
Landscape genetics is a powerful tool for conservation because it identifies landscape features that are important for maintaining genetic connectivity between populations within heterogeneous landscapes. However, using landscape genetics in poorly understood species presents a number of challenges, namely, limited life history information for the focal population and spatially biased sampling. Both obstacles can reduce power in statistics, particularly in individual-based studies. In this study, we genotyped 233 American badgers in Wisconsin at 12 microsatellite loci to identify alternative statistical approaches that can be applied to poorly understood species in an individual-based framework. Badgers are protected in Wisconsin owing to an overall lack in life history information, so our study utilized partial redundancy analysis (RDA) and spatially lagged regressions to quantify how three landscape factors (Wisconsin River, Ecoregions and land cover) impacted gene flow. We also performed simulations to quantify errors created by spatially biased sampling. Statistical analyses first found that geographic distance was an important influence on gene flow, mainly driven by fine-scale positive spatial autocorrelations. After controlling for geographic distance, both RDA and regressions found that Wisconsin River and Agriculture were correlated with genetic differentiation. However, only Agriculture had an acceptable type I error rate (3-5%) to be considered biologically relevant. Collectively, this study highlights the benefits of combining robust statistics and error assessment via simulations and provides a method for hypothesis testing in individual-based landscape genetics.
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Affiliation(s)
- E M Kierepka
- Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, USA
| | - E K Latch
- Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, USA
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24
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Renner SC, Suarez-Rubio M, Wiesner KR, Drögemüller C, Gockel S, Kalko EKV, Ayasse M, Frantz AC. Using multiple landscape genetic approaches to test the validity of genetic clusters in a species characterized by an isolation-by-distance pattern. Biol J Linn Soc Lond 2015. [DOI: 10.1111/bij.12737] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Swen C. Renner
- Institute of Zoology; University of Natural Resources and Life Sciences; Gregor-Mendel-Straße 33 1180 Vienna Austria
- Smithsonian Conservation Biology Institute; Smithsonian Institution; Front Royal 1500 Remount Road VA 22630 USA
| | - Marcela Suarez-Rubio
- Institute of Zoology; University of Natural Resources and Life Sciences; Gregor-Mendel-Straße 33 1180 Vienna Austria
| | - Kerstin R. Wiesner
- Department of Ecology and Ecosystem Management; Technische Universität München; Hans-Carl-von-Carlowitz-Platz 2 85354 Freising Germany
| | - Cord Drögemüller
- Institute of Genetics; University of Berne; Bremgartenstraße 109a 3001 Berne Switzerland
| | - Sonja Gockel
- Department of Ecology and Ecosystem Management; Technische Universität München; Hans-Carl-von-Carlowitz-Platz 2 85354 Freising Germany
| | | | - Manfred Ayasse
- Institute of Ecology; University of Ulm; Albert-Einstein-Allee 11 89069 Ulm Germany
| | - Alain C. Frantz
- Musée National d'Histoire Naturelle; 25 rue Münster 2160 Luxembourg Luxembourg
- Fondation faune-flore; 25 rue Münster 2160 Luxembourg Luxembourg
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25
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Dijk RE, Covas R, Doutrelant C, Spottiswoode CN, Hatchwell BJ. Fine‐scale genetic structure reflects sex‐specific dispersal strategies in a population of sociable weavers (
Philetairus socius
). Mol Ecol 2015; 24:4296-311. [DOI: 10.1111/mec.13308] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2014] [Revised: 06/29/2015] [Accepted: 07/06/2015] [Indexed: 02/04/2023]
Affiliation(s)
- René E. Dijk
- Department of Animal and Plant Sciences University of Sheffield Western Bank Sheffield S10 2TN UK
| | - Rita Covas
- CIBIO Research Centre in Biodiversity and Genetic Resources University of Porto Campus Agrário de Vairão, Rua Padre Armando Quintas no 7 4485‐661 Vairão Portugal
- Biology Department Science Faculty University of Porto Rua Campo Alegre s/n 4169‐007 Porto Portugal
- Percy FitzPatrick Institute of African Ornithology DST‐NRF Centre of Excellence University of Cape Town Rondebosch 7701 South Africa
| | - Claire Doutrelant
- Percy FitzPatrick Institute of African Ornithology DST‐NRF Centre of Excellence University of Cape Town Rondebosch 7701 South Africa
- CEFE‐CNRS 1919 Route de Mende Cedex 5 F 34293 Montpellier France
| | - Claire N. Spottiswoode
- Percy FitzPatrick Institute of African Ornithology DST‐NRF Centre of Excellence University of Cape Town Rondebosch 7701 South Africa
- Department of Zoology University of Cambridge Downing Street Cambridge CB2 3EJ UK
| | - Ben J. Hatchwell
- Department of Animal and Plant Sciences University of Sheffield Western Bank Sheffield S10 2TN UK
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26
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Vergara M, Basto MP, Madeira MJ, Gómez-Moliner BJ, Santos-Reis M, Fernandes C, Ruiz-González A. Inferring Population Genetic Structure in Widely and Continuously Distributed Carnivores: The Stone Marten (Martes foina) as a Case Study. PLoS One 2015; 10:e0134257. [PMID: 26222680 PMCID: PMC4519273 DOI: 10.1371/journal.pone.0134257] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2015] [Accepted: 07/07/2015] [Indexed: 11/20/2022] Open
Abstract
The stone marten is a widely distributed mustelid in the Palaearctic region that exhibits variable habitat preferences in different parts of its range. The species is a Holocene immigrant from southwest Asia which, according to fossil remains, followed the expansion of the Neolithic farming cultures into Europe and possibly colonized the Iberian Peninsula during the Early Neolithic (ca. 7,000 years BP). However, the population genetic structure and historical biogeography of this generalist carnivore remains essentially unknown. In this study we have combined mitochondrial DNA (mtDNA) sequencing (621 bp) and microsatellite genotyping (23 polymorphic markers) to infer the population genetic structure of the stone marten within the Iberian Peninsula. The mtDNA data revealed low haplotype and nucleotide diversities and a lack of phylogeographic structure, most likely due to a recent colonization of the Iberian Peninsula by a few mtDNA lineages during the Early Neolithic. The microsatellite data set was analysed with a) spatial and non-spatial Bayesian individual-based clustering (IBC) approaches (STRUCTURE, TESS, BAPS and GENELAND), and b) multivariate methods [discriminant analysis of principal components (DAPC) and spatial principal component analysis (sPCA)]. Additionally, because isolation by distance (IBD) is a common spatial genetic pattern in mobile and continuously distributed species and it may represent a challenge to the performance of the above methods, the microsatellite data set was tested for its presence. Overall, the genetic structure of the stone marten in the Iberian Peninsula was characterized by a NE-SW spatial pattern of IBD, and this may explain the observed disagreement between clustering solutions obtained by the different IBC methods. However, there was significant indication for contemporary genetic structuring, albeit weak, into at least three different subpopulations. The detected subdivision could be attributed to the influence of the rivers Ebro, Tagus and Guadiana, suggesting that main watercourses in the Iberian Peninsula may act as semi-permeable barriers to gene flow in stone martens. To our knowledge, this is the first phylogeographic and population genetic study of the species at a broad regional scale. We also wanted to make the case for the importance and benefits of using and comparing multiple different clustering and multivariate methods in spatial genetic analyses of mobile and continuously distributed species.
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Affiliation(s)
- María Vergara
- Department of Zoology and Animal Cell Biology, Zoology Laboratory, University of the Basque Country (UPV/EHU), Vitoria-Gasteiz, Spain
- Systematics, Biogeography and Population Dynamics Research Group, Lascaray Research Center, University of the Basque Country (UPV/EHU), Vitoria-Gasteiz, Spain
| | - Mafalda P. Basto
- CE3C—Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - María José Madeira
- Department of Zoology and Animal Cell Biology, Zoology Laboratory, University of the Basque Country (UPV/EHU), Vitoria-Gasteiz, Spain
- Systematics, Biogeography and Population Dynamics Research Group, Lascaray Research Center, University of the Basque Country (UPV/EHU), Vitoria-Gasteiz, Spain
| | - Benjamín J. Gómez-Moliner
- Department of Zoology and Animal Cell Biology, Zoology Laboratory, University of the Basque Country (UPV/EHU), Vitoria-Gasteiz, Spain
- Systematics, Biogeography and Population Dynamics Research Group, Lascaray Research Center, University of the Basque Country (UPV/EHU), Vitoria-Gasteiz, Spain
| | - Margarida Santos-Reis
- CE3C—Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Carlos Fernandes
- CE3C—Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Aritz Ruiz-González
- Department of Zoology and Animal Cell Biology, Zoology Laboratory, University of the Basque Country (UPV/EHU), Vitoria-Gasteiz, Spain
- Systematics, Biogeography and Population Dynamics Research Group, Lascaray Research Center, University of the Basque Country (UPV/EHU), Vitoria-Gasteiz, Spain
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Cabria MT, Gonzalez EG, Gomez-Moliner BJ, Michaux JR, Skumatov D, Kranz A, Fournier P, Palazon S, Zardoya R. Patterns of genetic variation in the endangered European mink (Mustela lutreola L., 1761). BMC Evol Biol 2015; 15:141. [PMID: 26183103 PMCID: PMC4504092 DOI: 10.1186/s12862-015-0427-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2015] [Accepted: 07/02/2015] [Indexed: 11/14/2022] Open
Abstract
BACKGROUND The European mink (Mustela lutreola, L. 1761) is a critically endangered mustelid, which inhabits several main river drainages in Europe. Here, we assess the genetic variation of existing populations of this species, including new sampling sites and additional molecular markers (newly developed microsatellite loci specific to European mink) as compared to previous studies. Probabilistic analyses were used to examine genetic structure within and between existing populations, and to infer phylogeographic processes and past demography. RESULTS According to both mitochondrial and nuclear microsatellite markers, Northeastern (Russia, Estonia and Belarus) and Southeastern (Romania) European populations showed the highest intraspecific diversity. In contrast, Western European (France and Spain) populations were the least polymorphic, featuring a unique mitochondrial DNA haplotype. The high differentiation values detected between Eastern and Western European populations could be the result of genetic drift in the latter due to population isolation and reduction. Genetic differences among populations were further supported by Bayesian clustering and two main groups were confirmed (Eastern vs. Western Europe) along with two contained subgroups at a more local scale (Northeastern vs. Southeastern Europe; France vs. Spain). CONCLUSIONS Genetic data and performed analyses support a historical scenario of stable European mink populations, not affected by Quaternary climate oscillations in the Late Pleistocene, and posterior expansion events following river connections in both North- and Southeastern European populations. This suggests an eastern refuge during glacial maxima (as already proposed for boreal and continental species). In contrast, Western Europe was colonised more recently following either natural expansions or putative human introductions. Low levels of genetic diversity observed within each studied population suggest recent bottleneck events and stress the urgent need for conservation measures to counteract the demographic decline experienced by the European mink.
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Affiliation(s)
- Maria Teresa Cabria
- Departamento de Zoología y B.C.A., Facultad de Farmacia, Universidad del País Vasco UPV/EHU, Paseo de las Universidades, 7, 01006, Vitoria-Gasteiz, Spains.
- Laboratoire de Biologie Évolutive, Institut de Botanique (Bat.22), Université de Liège (Sart Tilman), Boulevard du Rectorat, 27, B4000, Liège, Belgium.
| | - Elena G Gonzalez
- Departamento de Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales, CSIC, José Gutiérrez Abascal, 2, 28006, Madrid, Spain.
| | - Benjamin J Gomez-Moliner
- Departamento de Zoología y B.C.A., Facultad de Farmacia, Universidad del País Vasco UPV/EHU, Paseo de las Universidades, 7, 01006, Vitoria-Gasteiz, Spains.
| | - Johan R Michaux
- Laboratoire de Biologie Évolutive, Institut de Botanique (Bat.22), Université de Liège (Sart Tilman), Boulevard du Rectorat, 27, B4000, Liège, Belgium.
- Centre de Biologie et de Gestion des Populations, CBGP, Campus international de Baillarguet, CS 30016, 34988, Montferrier-sur-Lez, Cedex, France.
| | - Dimitry Skumatov
- Russian Research Institute of Game Management and Fur Farming, Engels Street, 79, Kirov, Russia.
| | - Andreas Kranz
- Institute of Wildlife Biology and Game Management, BOKU University of Natural Resources and Life Sciences, Gregor Mendel Street 33, 1180, Vienna, Austria.
| | - Pascal Fournier
- Groupe de Recherche et d'Etudes pour la Gestion de l'Environnement (GREGE), Route de Préchac, 33730, Villandraut, France.
| | - Santiago Palazon
- Departament de Biologia Animal, Facultat de Biologia, Universitat de Barcelona, Diagonal 643, 2ª planta, 08028, Barcelona, Spain.
| | - Rafael Zardoya
- Departamento de Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales, CSIC, José Gutiérrez Abascal, 2, 28006, Madrid, Spain.
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28
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Horreo JL, Fitze P. Population structure of three Psammodromusspecies in the Iberian Peninsula. PeerJ 2015; 3:e994. [PMID: 26056622 PMCID: PMC4458133 DOI: 10.7717/peerj.994] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Accepted: 05/12/2015] [Indexed: 11/20/2022] Open
Affiliation(s)
- Jose L. Horreo
- Department of Ecology and Evolution, University of Lausanne, Biophore, Lausanne, Switzerland
| | - Patrick Fitze
- Department of Ecology and Evolution, University of Lausanne, Biophore, Lausanne, Switzerland
- Instituto Pirenaico de Ecología (IPE-CSIC), Jaca, Spain
- Fundación Araid, Zaragoza, Spain
- Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales (MNCN-CSIC), Madrid, Spain
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Červinka J, Riegert J, Grill S, Šálek M. Large-scale evaluation of carnivore road mortality: the effect of landscape and local scale characteristics. MAMMAL RES 2015. [DOI: 10.1007/s13364-015-0226-0] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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30
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Fenderson LE, Kovach AI, Litvaitis JA, O'Brien KM, Boland KM, Jakubas WJ. A multiscale analysis of gene flow for the New England cottontail, an imperiled habitat specialist in a fragmented landscape. Ecol Evol 2014; 4:1853-75. [PMID: 24963381 PMCID: PMC4063480 DOI: 10.1002/ece3.1068] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2013] [Revised: 03/12/2014] [Accepted: 03/14/2014] [Indexed: 11/21/2022] Open
Abstract
Landscape features of anthropogenic or natural origin can influence organisms' dispersal patterns and the connectivity of populations. Understanding these relationships is of broad interest in ecology and evolutionary biology and provides key insights for habitat conservation planning at the landscape scale. This knowledge is germane to restoration efforts for the New England cottontail (Sylvilagus transitionalis), an early successional habitat specialist of conservation concern. We evaluated local population structure and measures of genetic diversity of a geographically isolated population of cottontails in the northeastern United States. We also conducted a multiscale landscape genetic analysis, in which we assessed genetic discontinuities relative to the landscape and developed several resistance models to test hypotheses about landscape features that promote or inhibit cottontail dispersal within and across the local populations. Bayesian clustering identified four genetically distinct populations, with very little migration among them, and additional substructure within one of those populations. These populations had private alleles, low genetic diversity, critically low effective population sizes (3.2-36.7), and evidence of recent genetic bottlenecks. Major highways and a river were found to limit cottontail dispersal and to separate populations. The habitat along roadsides, railroad beds, and utility corridors, on the other hand, was found to facilitate cottontail movement among patches. The relative importance of dispersal barriers and facilitators on gene flow varied among populations in relation to landscape composition, demonstrating the complexity and context dependency of factors influencing gene flow and highlighting the importance of replication and scale in landscape genetic studies. Our findings provide information for the design of restoration landscapes for the New England cottontail and also highlight the dual influence of roads, as both barriers and facilitators of dispersal for an early successional habitat specialist in a fragmented landscape.
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Affiliation(s)
- Lindsey E Fenderson
- 114 James Hall, Department of Natural Resources and the Environment, University of New Hampshire Durham, New Hampshire, 03824
| | - Adrienne I Kovach
- 114 James Hall, Department of Natural Resources and the Environment, University of New Hampshire Durham, New Hampshire, 03824
| | - John A Litvaitis
- 114 James Hall, Department of Natural Resources and the Environment, University of New Hampshire Durham, New Hampshire, 03824
| | - Kathleen M O'Brien
- United States Fish and Wildlife Service, Rachel Carson National Wildlife Refuge 321 Port Road, Wells, Maine, 04090
| | - Kelly M Boland
- United States Fish and Wildlife Service, Rachel Carson National Wildlife Refuge 321 Port Road, Wells, Maine, 04090
| | - Walter J Jakubas
- Maine Department of Inland Fisheries & Wildlife 650 State Street, Bangor, Maine, 04401
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31
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Laurence S, Smith MJ, Schulte-Hostedde AI. Effects of structural connectivity on fine scale population genetic structure of muskrat, Ondatra zibethicus. Ecol Evol 2013; 3:3524-35. [PMID: 24223287 PMCID: PMC3797496 DOI: 10.1002/ece3.741] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2013] [Revised: 07/21/2013] [Accepted: 07/24/2013] [Indexed: 11/10/2022] Open
Abstract
In heterogeneous landscapes, physical barriers and loss of structural connectivity have been shown to reduce gene flow and therefore lead to population structuring. In this study, we assessed the influence of landscape features on population genetic structure and gene flow of a semiaquatic species, the muskrat. A total of 97 muskrats were sampled from three watersheds near Sudbury, Ontario, Canada. We estimated population genetic structure using 11 microsatellite loci and identified a single genetic cluster and no genetic differences were found among the watersheds as a result of high levels of gene flow. At finer scales, we assessed the correlation between individual pairwise genetic distances and Euclidean distance as well as different models of least cost path (LCP). We used a range of cost values for the landscape types in order to build our LCP models. We found a positive relationship between genetic distance and least cost distance when we considered roads as corridors for movements. Open landscapes and urban areas seemed to restrict but not prevent gene flow within the study area. Our study underlines the high-dispersal ability of generalist species in their use of landscape and highlights how landscape features often considered barriers to animal movements are corridors for other species.
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Affiliation(s)
- Sophie Laurence
- Department of Biology, Laurentian University 935 Ramsey Lake Road, Sudbury, Ontario, P3E 2C6, Canada
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32
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Joshi A, Vaidyanathan S, Mondol S, Edgaonkar A, Ramakrishnan U. Connectivity of tiger (Panthera tigris) populations in the human-influenced forest mosaic of Central India. PLoS One 2013; 8:e77980. [PMID: 24223132 PMCID: PMC3819329 DOI: 10.1371/journal.pone.0077980] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2013] [Accepted: 09/06/2013] [Indexed: 11/22/2022] Open
Abstract
Today, most wild tigers live in small, isolated Protected Areas within human dominated landscapes in the Indian subcontinent. Future survival of tigers depends on increasing local population size, as well as maintaining connectivity between populations. While significant conservation effort has been invested in increasing tiger population size, few initiatives have focused on landscape-level connectivity and on understanding the effect different landscape elements have on maintaining connectivity. We combined individual-based genetic and landscape ecology approaches to address this issue in six protected areas with varying tiger densities and separation in the Central Indian tiger landscape. We non-invasively sampled 55 tigers from different protected areas within this landscape. Maximum-likelihood and Bayesian genetic assignment tests indicate long-range tiger dispersal (on the order of 650 km) between protected areas. Further geo-spatial analyses revealed that tiger connectivity was affected by landscape elements such as human settlements, road density and host-population tiger density, but not by distance between populations. Our results elucidate the importance of landscape and habitat viability outside and between protected areas and provide a quantitative approach to test functionality of tiger corridors. We suggest future management strategies aim to minimize urban expansion between protected areas to maximize tiger connectivity. Achieving this goal in the context of ongoing urbanization and need to sustain current economic growth exerts enormous pressure on the remaining tiger habitats and emerges as a big challenge to conserve wild tigers in the Indian subcontinent.
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Affiliation(s)
- Aditya Joshi
- Post-graduate Program in Wildlife Biology and Conservation, Wildlife Conservation Society-India Program, National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India
| | - Srinivas Vaidyanathan
- Foundation for Ecological Research, Advocacy & Learning, Pondicherry Campus, Auroville Post, Tamil Nadu, India
| | - Samrat Mondol
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India
| | - Advait Edgaonkar
- Indian Institute of Forest Management, Nehru nagar, Bhopal, India
| | - Uma Ramakrishnan
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India
- * E-mail:
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35
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Talbot B, Garant D, Rioux Paquette S, Mainguy J, Pelletier F. Lack of genetic structure and female-specific effect of dispersal barriers in a rabies vector, the striped skunk (Mephitis mephitis). PLoS One 2012; 7:e49736. [PMID: 23166760 PMCID: PMC3498222 DOI: 10.1371/journal.pone.0049736] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2012] [Accepted: 10/11/2012] [Indexed: 11/28/2022] Open
Abstract
Evaluating the permeability of potential barriers to movement, dispersal and gene exchanges can help describe spreading patterns of wildlife diseases. Here, we used landscape genetics methods to assess the genetic structure of the striped skunk (Mephitis mephitis), which is a frequent vector of rabies, a lethal zoonosis of great concern for public health. Our main objective was to identify landscape elements shaping the genetic structure of this species in Southern Québec, Canada, in an area where the raccoon rabies variant has been detected. We hypothesised that geographic distance and landscape barriers, such as highways and major rivers, would modulate genetic structure. We genotyped a total of 289 individuals sampled across a large area (22,000 km2) at nice microsatellite loci. Genetic structure analyses identified a single genetic cluster in the study area. Major rivers and highways, however, influenced the genetic relatedness among sampled individuals. Sex-specific analyses revealed that rivers significantly limited dispersal only for females while highways only had marginal effects. Rivers and highways did not significantly affect male dispersal. These results support the contention that female skunks are more philopatric than males. Overall, our results suggest that the effects of major rivers and highways on dispersal are sex-specific and rather weak and are thus unlikely to prevent the spread of rabies within and among striped skunk populations.
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Affiliation(s)
- Benoit Talbot
- Département de Biologie, Université de Sherbrooke, Sherbrooke, Québec, Canada.
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36
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Blair ME, Melnick DJ. Scale-dependent effects of a heterogeneous landscape on genetic differentiation in the Central American squirrel monkey (Saimiri oerstedii). PLoS One 2012; 7:e43027. [PMID: 22905197 PMCID: PMC3419685 DOI: 10.1371/journal.pone.0043027] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2012] [Accepted: 07/16/2012] [Indexed: 11/30/2022] Open
Abstract
Landscape genetic studies offer a fine-scale understanding of how habitat heterogeneity influences population genetic structure. We examined population genetic structure and conducted a landscape genetic analysis for the endangered Central American Squirrel Monkey (Saimiri oerstedii) that lives in the fragmented, human-modified habitats of the Central Pacific region of Costa Rica. We analyzed non-invasively collected fecal samples from 244 individuals from 14 groups for 16 microsatellite markers. We found two geographically separate genetic clusters in the Central Pacific region with evidence of recent gene flow among them. We also found significant differentiation among groups of S. o. citrinellus using pairwise FST comparisons. These groups are in fragments of secondary forest separated by unsuitable “matrix” habitats such as cattle pasture, commercial African oil palm plantations, and human residential areas. We used an individual-based landscape genetic approach to measure spatial patterns of genetic variance while taking into account landscape heterogeneity. We found that large, commercial oil palm plantations represent moderate barriers to gene flow between populations, but cattle pastures, rivers, and residential areas do not. However, the influence of oil palm plantations on genetic variance was diminished when we restricted analyses to within population pairs, suggesting that their effect is scale-dependent and manifests during longer dispersal events among populations. We show that when landscape genetic methods are applied rigorously and at the right scale, they are sensitive enough to track population processes even in species with long, overlapping generations such as primates. Thus landscape genetic approaches are extremely valuable for the conservation management of a diverse array of endangered species in heterogeneous, human-modified habitats. Our results also stress the importance of explicitly considering the heterogeneity of matrix habitats in landscape genetic studies, instead of assuming that all matrix habitats have a uniform effect on population genetic processes.
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Affiliation(s)
- Mary E Blair
- Department of Ecology, Evolution and Environmental Biology, Columbia University, New York, New York, United States of America.
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37
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McDevitt AD, Oliver MK, Piertney SB, Szafrańska PA, Konarzewski M, Zub K. Individual variation in dispersal associated with phenotype influences fine-scale genetic structure in weasels. CONSERV GENET 2012. [DOI: 10.1007/s10592-012-0376-4] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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38
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Frantz AC, Bertouille S, Eloy MC, Licoppe A, Chaumont F, Flamand MC. Comparative landscape genetic analyses show a Belgian motorway to be a gene flow barrier for red deer (Cervus elaphus), but not wild boars (Sus scrofa). Mol Ecol 2012; 21:3445-57. [PMID: 22607276 DOI: 10.1111/j.1365-294x.2012.05623.x] [Citation(s) in RCA: 87] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
While motorways are often assumed to influence the movement behaviour of large mammals, there are surprisingly few studies that show an influence of these linear structures on the genetic make-up of wild ungulate populations. Here, we analyse the spatial genetic structure of red deer (Cervus elaphus) and wild boars (Sus scrofa) along a stretch of motorway in the Walloon part of Belgium. Altogether, 876 red deer were genotyped at 13 microsatellite loci, and 325 wild boars at 14 loci. In the case of the red deer, different genetic clustering tools identified two genetic subpopulations whose borders matched the motorway well. Conversely, no genetic structure was identified in the case of the wild boar. Analysis of isolation-by-distance patterns of pairs of individuals on the same side and on different sides of the motorway also suggested that the road was a barrier to red deer, but not to wild boar movement. While telemetry studies seem to confirm that red deer are more affected by motorways than wild boar, the red deer sample size was also much larger than that of the wild boars. We therefore repeated the analysis of genetic structure in the red deer with randomly sub-sampled data sets of decreasing size. The power to detect the genetic structure using clustering methods decreased with decreasing sample size.
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Affiliation(s)
- A C Frantz
- Institute of Zoology, University of Greifswald, J.-S. Bach Str. 11/12, D-17489 Greifswald, Germany.
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Reding DM, Bronikowski AM, Johnson WE, Clark WR. Pleistocene and ecological effects on continental-scale genetic differentiation in the bobcat (Lynx rufus). Mol Ecol 2012; 21:3078-93. [PMID: 22548482 DOI: 10.1111/j.1365-294x.2012.05595.x] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
The potential for widespread, mobile species to exhibit genetic structure without clear geographic barriers is a topic of growing interest. Yet the patterns and mechanisms of structure--particularly over broad spatial scales--remain largely unexplored for these species. Bobcats occur across North America and possess many characteristics expected to promote gene flow. To test whether historical, topographic or ecological factors have influenced genetic differentiation in this species, we analysed 1 kb mtDNA sequence and 15 microsatellite loci from over 1700 samples collected across its range. The primary signature in both marker types involved a longitudinal cline with a sharp transition, or suture zone, occurring along the Great Plains. Thus, the data distinguished bobcats in the eastern USA from those in the western half, with no obvious physical barrier to gene flow. Demographic analyses supported a scenario of expansion from separate Pleistocene refugia, with the Great Plains representing a zone of secondary contact. Substructure within the two main lineages likely reflected founder effects, ecological factors, anthropogenic/topographic effects or a combination of these forces. Two prominent topographic features, the Mississippi River and Rocky Mountains, were not supported as significant genetic barriers. Ecological regions and environmental correlates explained a small but significant proportion of genetic variation. Overall, results implicate historical processes as the primary cause of broad-scale genetic differentiation, but contemporary forces seem to also play a role in promoting and maintaining structure. Despite the bobcat's mobility and broad niche, large-scale landscape changes have contributed to significant and complex patterns of genetic structure.
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Affiliation(s)
- Dawn M Reding
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, 251 Bessey Hall, Ames, IA 50011, USA.
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40
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YANNIC GLENN, PELLISSIER LOÏC, DUBEY SYLVAIN, VEGA RODRIGO, BASSET PATRICK, MAZZOTTI STEFANO, PECCHIOLI ELENA, VERNESI CRISTIANO, HAUFFE HEIDIC, SEARLE JEREMYB, HAUSSER JACQUES. Multiple refugia and barriers explain the phylogeography of the Valais shrew, Sorex antinorii (Mammalia: Soricomorpha). Biol J Linn Soc Lond 2012. [DOI: 10.1111/j.1095-8312.2011.01824.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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41
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Thimmayya AC, Buskirk SW. Genetic connectivity and diversity of pygmy rabbits (Brachylagus idahoensis) in southern Wyoming. J Mammal 2012. [DOI: 10.1644/11-mamm-a-045.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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Vander Wal E, Paquet PC, Andrés JA. Influence of landscape and social interactions on transmission of disease in a social cervid. Mol Ecol 2012; 21:1271-82. [PMID: 22289112 DOI: 10.1111/j.1365-294x.2011.05431.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The mechanisms of pathogen transmission are often social behaviours. These occur at local scales and are affected by landscape-scale population structure. Host populations frequently exist in patchy and isolated environments that create a continuum of genetic and social familiarity. Such variability has an important multispatial effect on pathogen spread. We assessed elk dispersal (i.e. likelihood of interdeme pathogen transmission) through spatially explicit genetic analyses. At a landscape scale, the elk population was composed of one cluster within a southeast-to-northwest cline spanning three spatially discrete subpopulations of elk across two protected areas in Manitoba (Canada). Genetic data are consistent with spatial variability in apparent prevalence of bovine tuberculosis (TB) in elk. Given the existing population structure, between-subpopulation spread of disease because of elk dispersal is unlikely. Furthermore, to better understand the risk of spread and distribution of the TB, we used a combination of close-contact logging biotelemetry and genetic data, which highlights how social intercourse may affect pathogen transmission. Our results indicate that close-contact interaction rate and duration did not covary with genetic relatedness. Thus, direct elk-to-elk transmission of disease is unlikely to be constrained to related individuals. That social intercourse in elk is not limited to familial groups provides some evidence pathogen transmission may be density-dependent. We show that the combination of landscape-scale genetics, relatedness and local-scale social behaviours is a promising approach to understand and predict landscape-level pathogen transmission within our system and within all social ungulate systems affected by transmissible diseases.
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Affiliation(s)
- Eric Vander Wal
- Department of Biology, University of Saskatchewan112 Science Place, Saskatoon, SK, Canada.
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Côté H, Garant D, Robert K, Mainguy J, Pelletier F. Genetic structure and rabies spread potential in raccoons: the role of landscape barriers and sex-biased dispersal. Evol Appl 2012; 5:393-404. [PMID: 25568059 DOI: 10.1111/j.1752-4571.2012.00238.x] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2011] [Accepted: 12/09/2011] [Indexed: 11/29/2022] Open
Abstract
Identifying natural barriers to movements of hosts associated with infectious diseases is essential for developing effective control strategies. Raccoon rabies variant (RRV) is a zoonosis of concern for humans because its main vector, the raccoon (Procyon lotor), is found near residential areas. In Québec, Canada, all cases of RRV found in raccoons since 2006 were detected on the eastern side of the Richelieu River, suggesting that this river acts as a barrier to gene flow and thus the potential for RRV to spread. The objectives of this study were to characterize the genetic structure of raccoon populations and assess the effect of the Richelieu River on the population structure in southern Québec, Canada. We also evaluated whether RRV spread potential differed between sex and at a larger spatial scale. Our analyses revealed a weak signal of genetic differentiation among individuals located on each side of the Richelieu River. At a larger spatial scale, genetic structuring was weak. Our results suggest that rivers might not always efficiently restrain raccoon movements and spread of RRV. We suggest that the difference in genetic structure found between sexes can be partly explained by male movements during the breeding season in winter, when ice bridges allow passage over most rivers in Québec.
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Affiliation(s)
- Héloïse Côté
- Département de biologie, Université de Sherbrooke Sherbrooke, QC, Canada ; Canada Research Chair in Evolutionary Demography and Conservation, Département de biologie, Université de Sherbrooke Sherbrooke, QC, Canada
| | - Dany Garant
- Département de biologie, Université de Sherbrooke Sherbrooke, QC, Canada
| | - Karine Robert
- Département de biologie, Université de Sherbrooke Sherbrooke, QC, Canada ; Canada Research Chair in Evolutionary Demography and Conservation, Département de biologie, Université de Sherbrooke Sherbrooke, QC, Canada
| | - Julien Mainguy
- Ministère des Ressources naturelles et de la Faune, Direction de l'expertise sur la faune et ses habitats, Service de la biodiversité et des maladies de la faune Québec city, QC, Canada
| | - Fanie Pelletier
- Département de biologie, Université de Sherbrooke Sherbrooke, QC, Canada ; Canada Research Chair in Evolutionary Demography and Conservation, Département de biologie, Université de Sherbrooke Sherbrooke, QC, Canada
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Beatty WS, Beasley JC, Dharmarajan G, Rhodes OE. Genetic structure of a Virginia opossum (Didelphis virginiana) population inhabiting a fragmented agricultural ecosystem. CAN J ZOOL 2012. [DOI: 10.1139/z11-119] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Fragmentation has drastically altered the quality of habitats throughout numerous ecosystems, often leading to dramatic changes in the composition of wildlife communities. The ecology and associated movement behavior of a species may also be modified as a result of forest fragmentation, resulting in changes in genetic composition of the affected species. In this research, we evaluated the genetic structure of the Virginia opossum ( Didelphis virginiana Kerr, 1792) at the landscape and local scales in a fragmented, agricultural ecosystem in northern Indiana using 13 microsatellite loci. We examined 290 samples from opossums inhabiting 28 discrete habitat patches, and evaluated partitioning of genetic variation of opossums among and within habitat patches. We observed low but significant levels of genetic structure (FST = 0.005) overall, and pairwise comparisons of FST values among habitat patches also were relatively low. Relatedness within patches was highly variable (–0.077 ≤ rxy ≤ 0.060), with a few patches exhibiting significantly higher levels of relatedness than random expectations, and we detected no evidence of sex-biased natal dispersal. These results contrast with previous field studies that documented male-biased dispersal in the Virginia opossum, indicating dispersal in this species is plastic and dependent upon local environmental conditions.
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Affiliation(s)
- William S. Beatty
- Department of Forestry and Natural Resources, Purdue University, 195 Marsteller Street, West Lafayette, IN 47907, USA
| | - James C. Beasley
- Department of Forestry and Natural Resources, Purdue University, 195 Marsteller Street, West Lafayette, IN 47907, USA
| | - Guha Dharmarajan
- Department of Forestry and Natural Resources, Purdue University, 195 Marsteller Street, West Lafayette, IN 47907, USA
| | - Olin E. Rhodes
- Department of Forestry and Natural Resources, Purdue University, 195 Marsteller Street, West Lafayette, IN 47907, USA
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Fenwick NID. Modelled impacts of badger culling on cattle TB in a real area with geographic boundaries. Vet Rec 2011; 170:177. [PMID: 22158270 DOI: 10.1136/vr.100051] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
As a part of bovine tuberculosis eradication strategy, the Welsh Government has proposed a badger cull in a defined area in and around North Pembrokeshire, and has published information on herd densities and incidence levels within and close to the area. In the present study, three sets of previously published data relating the impact of badger culling inside and around previous culling areas to distances from culling area boundaries have been used to model possible impacts of the proposed cull, taking account of three possible scenarios in which geographic boundaries reduce, to varying extents, adverse effects caused by increased badger movements. For the scenarios considered, the results predict average changes in confirmed herd incidences (CHIs) in the range -15.7 (-29.1 to 1.6 per cent) to -25.3 per cent (-52.2 to 46.1 per cent) over a period of 10 years, comprising average changes in the culling area in the range -26.1 (-34.8 to -14.8 per cent) to -32.6 per cent (-59.6 to 47.6 per cent), and average changes on adjoining land in the range 4.5 (-21.8 to 39.8 per cent) to 7.8 per cent (-16.1 to 38.5 per cent). The overall impacts equate to average reductions in the number of CHIs of between 122 (37 to 187) and 158 (-254 to 304).
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Affiliation(s)
- N I D Fenwick
- Llys Amaeth, Plas Gogerddan, Aberystwyth, Ceredigion SY23 3BT, UK.
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Born C, Le Roux PC, Spohr C, McGeoch MA, Van Vuuren BJ. Plant dispersal in the sub-Antarctic inferred from anisotropic genetic structure. Mol Ecol 2011; 21:184-94. [PMID: 22129220 DOI: 10.1111/j.1365-294x.2011.05372.x] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Climatic conditions and landscape features often strongly affect species' local distribution patterns, dispersal, reproduction and survival and may therefore have considerable impacts on species' fine-scale spatial genetic structure (SGS). In this study, we demonstrate the efficacy of combining fine-scale SGS analyses with isotropic and anisotropic spatial autocorrelation techniques to infer the impact of wind patterns on plant dispersal processes. We genotyped 1304 Azorella selago (Apiaceae) specimens, a wind-pollinated and wind-dispersed plant, from four populations distributed across sub-Antarctic Marion Island. SGS was variable with Sp values ranging from 0.001 to 0.014, suggesting notable variability in dispersal distance and wind velocities between sites. Nonetheless, the data supported previous hypotheses of a strong NW-SE gradient in wind strength across the island. Anisotropic autocorrelation analyses further suggested that dispersal is strongly directional, but varying between sites depending on the local prevailing winds. Despite the high frequency of gale-force winds on Marion Island, gene dispersal distance estimates (σ) were surprisingly low (<10 m), most probably because of a low pollen dispersal efficiency. An SGS approach in association with isotropic and anisotropic analyses provides a powerful means to assess the relative influence of abiotic factors on dispersal and allow inferences that would not be possible without this combined approach.
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Affiliation(s)
- Céline Born
- Evolutionary Genomics Group, Department of Botany and Zoology, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa.
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Latch EK, Boarman WI, Walde A, Fleischer RC. Fine-scale analysis reveals cryptic landscape genetic structure in desert tortoises. PLoS One 2011; 6:e27794. [PMID: 22132143 PMCID: PMC3221657 DOI: 10.1371/journal.pone.0027794] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2011] [Accepted: 10/25/2011] [Indexed: 12/02/2022] Open
Abstract
Characterizing the effects of landscape features on genetic variation is essential for understanding how landscapes shape patterns of gene flow and spatial genetic structure of populations. Most landscape genetics studies have focused on patterns of gene flow at a regional scale. However, the genetic structure of populations at a local scale may be influenced by a unique suite of landscape variables that have little bearing on connectivity patterns observed at broader spatial scales. We investigated fine-scale spatial patterns of genetic variation and gene flow in relation to features of the landscape in desert tortoise (Gopherus agassizii), using 859 tortoises genotyped at 16 microsatellite loci with associated data on geographic location, sex, elevation, slope, and soil type, and spatial relationship to putative barriers (power lines, roads). We used spatially explicit and non-explicit Bayesian clustering algorithms to partition the sample into discrete clusters, and characterize the relationships between genetic distance and ecological variables to identify factors with the greatest influence on gene flow at a local scale. Desert tortoises exhibit weak genetic structure at a local scale, and we identified two subpopulations across the study area. Although genetic differentiation between the subpopulations was low, our landscape genetic analysis identified both natural (slope) and anthropogenic (roads) landscape variables that have significantly influenced gene flow within this local population. We show that desert tortoise movements at a local scale are influenced by features of the landscape, and that these features are different than those that influence gene flow at larger scales. Our findings are important for desert tortoise conservation and management, particularly in light of recent translocation efforts in the region. More generally, our results indicate that recent landscape changes can affect gene flow at a local scale and that their effects can be detected almost immediately.
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Affiliation(s)
- Emily K Latch
- Behavioral and Molecular Ecology Research Group, Department of Biological Sciences, University of Wisconsin, Milwaukee, Wisconsin, United States of America.
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Guivier E, Galan M, Chaval Y, Xuéreb A, Ribas Salvador A, Poulle ML, Voutilainen L, Henttonen H, Charbonnel N, Cosson JF. Landscape genetics highlights the role of bank vole metapopulation dynamics in the epidemiology of Puumala hantavirus. Mol Ecol 2011; 20:3569-83. [PMID: 21819469 DOI: 10.1111/j.1365-294x.2011.05199.x] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
Rodent host dynamics and dispersal are thought to be critical for hantavirus epidemiology as they determine pathogen persistence and transmission within and between host populations. We used landscape genetics to investigate how the population dynamics of the bank vole Myodes glareolus, the host of Puumala hantavirus (PUUV), vary with forest fragmentation and influence PUUV epidemiology. We sampled vole populations within the Ardennes, a French PUUV endemic area. We inferred demographic features such as population size, isolation and migration with regard to landscape configuration. We next analysed the influence of M. glareolus population dynamics on PUUV spatial distribution. Our results revealed that the global metapopulation dynamics of bank voles were strongly shaped by landscape features, including suitable patch size and connectivity. Large effective size in forest might therefore contribute to the higher observed levels of PUUV prevalence. By contrast, populations from hedge networks highly suffered from genetic drift and appeared strongly isolated from all other populations. This might result in high probabilities of local extinction for both M. glareolus and PUUV. Besides, we detected signatures of asymmetric bank vole migration from forests to hedges. These movements were likely to sustain PUUV in fragmented landscapes. In conclusion, our study provided arguments in favour of source-sink dynamics shaping PUUV persistence and spread in heterogeneous, Western European temperate landscapes. It illustrated the potential contribution of landscape genetics to the understanding of the epidemiological processes occurring at this local scale.
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Affiliation(s)
- E Guivier
- INRA, UMR CBGP, Campus international de Baillarguet, CS 30016, F-34988 Montferrier-sur-Lez Cedex, France
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Korn M, Green AJ, Machado M, García-de-Lomas J, Cristo M, Cancela da Fonseca L, Frisch D, Pérez-Bote JL, Hundsdoerfer AK. Phylogeny, molecular ecology and taxonomy of southern Iberian lineages of Triops mauritanicus (Crustacea: Notostraca). ORG DIVERS EVOL 2010. [DOI: 10.1007/s13127-010-0026-y] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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