Phosphorus nutrition and mycorrhiza effects on grass leaf growth. P status- and size-mediated effects on growth zone kinematics

Integrated analyses reveal the response of peanut to phosphorus deficiency on phenotype, transcriptome and metabolome

BACKGROUND

Phosphorus (P) is one of the most essential macronutrients for crops. The growth and yield of peanut (Arachis hypogaea L.) are always limited by P deficiency. However, the transcriptional and metabolic regulatory mechanisms were less studied. In this study, valuable phenotype, transcriptome and metabolome data were analyzed to illustrate the regulatory mechanisms of peanut under P deficiency stress.

RESULT

In present study, two treatments of P level in deficiency with no P application (-P) and in sufficiency with 0.6 mM P application (+ P) were used to investigate the response of peanut on morphology, physiology, transcriptome, microRNAs (miRNAs), and metabolome characterizations. The growth and development of plants were significantly inhibited under -P treatment. A total of 6088 differentially expressed genes (DEGs) were identified including several transcription factor family genes, phosphate transporter genes, hormone metabolism related genes and antioxidant enzyme related genes that highly related to P deficiency stress. The Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses indicated that 117 genes were annotated in the phenylpropanoid biosynthesis pathway under P deficiency stress. A total of 6 miRNAs have been identified significantly differential expression between + P and -P group by high-throughput sequencing of miRNAs, including two up-regulated miRNAs (ahy-miR160-5p and ahy-miR3518) and four down-regulated miRNAs (ahy-miR408-5p, ahy-miR408-3p, ahy-miR398, and ahy-miR3515). Further, the predicted 22 target genes for 6 miRNAs and cis-elements in 2000 bp promoter region of miRNA genes were analyzed. A total of 439 differentially accumulated metabolites (DAMs) showed obviously differences in two experimental conditions.

CONCLUSIONS

According to the result of transcripome and metabolome analyses, we can draw a conclusion that by increasing the content of lignin, amino acids, and levan combining with decreasing the content of LPC, cell reduced permeability, maintained stability, raised the antioxidant capacity, and increased the P uptake in struggling for survival under P deficiency stress.

Screening tolerance to phosphorus starvation and haplotype analysis using phosphorus uptake 1 (Pup1) QTL linked markers in rice genotypes

Phosphorus (P) deficiency tolerance is a pivotal trait for plant growth and development. Most of the commercial modern cultivars lack this trait and reported it as a very serious problem limiting crop productivity. This trait is advantageous if present in modern high yielding varieties as it increases the yield under the phosphorus-deficient soil conditions. With the importance of phosphorus deficiency tolerance, the present investigation was carried out with an objective to screen for tolerance to phosphorus deficiency using solution culture and phosphorus uptake 1 (Pup1) locus linked markers in 30 diverse rice genotypes. A wide range of varied responses to P deficiency in rice genotypes for all the traits were observed. Root length and enzyme activity showed increased mean performance under the - P condition when compared to + P condition. Medium to high heritability estimates were obtained for most of the traits. Correlation analysis showed that the traits: root P content, fresh shoot weight, dry shoot weight, and shoot length showed highly significant correlations with each other under - P conditions. Based on the hydroponics and molecular screening, three genotypes viz., ADT (R) 48, Improved Pusa Basmati 1 and UPLRI 5 were classified as tolerant for its response to P deficiency as they possessed significant increase in desirable root and shoot traits, increased acid phosphatase enzyme and these genotypes also possessed the Pup1 allele for all the five markers. The selected genotypes may be useful for the exploration of novel genes conferring phosphorus deficiency tolerance and used as donor parents in the breeding programs. Absence of this allele in the rice genotypes viz., drought tolerant (Anna (R) 4) and submergence tolerant (CR 1009 Sub 1) may warrant the development of multiple abiotic stress tolerance cultivars for upland and submergence cropping systems in future rice breeding program.

Photosynthesis, Ecological Stoichiometry, and Non-Structural Carbohydrate Response to Simulated Nitrogen Deposition and Phosphorus Addition in Chinese Fir Forests

Phosphorus (P) deficiency in soil affects plant growth and primary production. Accelerated nitrogen (N) deposition can cause ecological carbon:nitrogen:phosphorus (C:N:P) stoichiometry imbalance and increase the degree of relative P deficiency in the soil. However, it remains unclear how N deposition affects P uptake and C:N:P stoichiometry in coniferous timber forests, and whether P addition diminishes the effect of N-induced P limitation on plant growth. From January 2017 to April 2018, we investigated the effects of nine different N and P addition treatments on 10-year old trees of Chinese fir, Cunninghamia lanceolata (Lamb.) Hook. Our results demonstrated that N and P additions at a high concentration could improve the photosynthetic capacity in Chinese fir by increasing the chlorophyll content and stimulating the photosynthesis activity. The C:N:P stoichiometry varied with the season under different N and P addition treatments, indicating that N addition at a moderate concentration could diminish the effect of the P limitation on the growth of Chinese fir. The soluble sugar content in the leaves displayed more stable seasonal variations, compared with those of starch. However, the non-structural carbohydrate (NSC) content in the leaves did not vary with the season under both P and N addition treatment. The data suggested that N and P combination treatment at moderate concentrations promoted carbon assimilation by accelerating the photosynthetic rate. Thus, our results provide new insights into the adaptation mechanisms of coniferous timber forest ecosystems to the effects of N deposition under P deficiency and can help to estimate the ecological effects of environmental changes linked to human management practices.

Molecular mechanisms underpinning phosphorus-use efficiency in rice

Orthophosphate (H₂ PO₄^- , Pi) is an essential macronutrient integral to energy metabolism as well as a component of membrane lipids, nucleic acids, including ribosomal RNA, and therefore essential for protein synthesis. The Pi concentration in the solution of most soils worldwide is usually far too low for maximum growth of crops, including rice. This has prompted the massive use of inefficient, polluting, and nonrenewable phosphorus (P) fertilizers in agriculture. We urgently need alternative and more sustainable approaches to decrease agriculture's dependence on Pi fertilizers. These include manipulating crops by (a) enhancing the ability of their roots to acquire limiting Pi from the soil (i.e. increased P-acquisition efficiency) and/or (b) increasing the total biomass/yield produced per molecule of Pi acquired from the soil (i.e. increased P-use efficiency). Improved P-use efficiency may be achieved by producing high-yielding plants with lower P concentrations or by improving the remobilization of acquired P within the plant so as to maximize growth and biomass allocation to developing organs. Membrane lipid remodelling coupled with hydrolysis of RNA and smaller P-esters in senescing organs fuels P remobilization in rice, the world's most important cereal crop.

Functional Assessment of an Overexpressed Arabidopsis Purple Acid Phosphatase Gene (AtPAP26) in Tobacco Plants

BACKGROUND

Overexpression of known genes encoding key phosphate (Pi)-metabolizing enzymes, such as acid phosphatases (APases), is presumed to help plants with Pi availability and absorption as they are mostly exposed to suboptimal environmental conditions for this vital element.

OBJECTIVES

In this study, the overexpression effect of AtPAP26, one of the main contributors in retrieving Pi from intracellular and extracellular compounds, was evaluated from various viewes in tobacco plant.

MATERIALS AND METHODS

As a heterologous expression system, the encoding cDNA sequence of AtPAP26 was transferred into tobacco plants.

RESULTS

A high growth rate of the transgenic lines was observed which could be due to an increased APase activity, leading to the high total phosphorus as well as the free Pi content of the transgenic plants. Interestingly, a significant increased activity of the other APases was also noticed, indicating a networking among them. These were accompanied by less branched and short primary roots and a decreased lateral root numbers grown in Pi-starvation condition compared to the wild type seedlings. Besides, a delayed germination and dwarf phenotype indicates the possible reduction in gibberellic acid biosynthesis in the transgenic lines.

CONCLUSIONS

Such transgenic plants are of interest not only for increased yield but also for the reduced need for chemical fertilizers and removal of excessive Pi accumulation in soils as a consequence of fertilizers' or poultry wastes' over-usage.

Nitrogen stress affects the turnover and size of nitrogen pools supplying leaf growth in a grass

The effect of nitrogen (N) stress on the pool system supplying currently assimilated and (re)mobilized N for leaf growth of a grass was explored by dynamic ¹⁵N labeling, assessment of total and labeled N import into leaf growth zones, and compartmental analysis of the label import data. Perennial ryegrass (Lolium perenne) plants, grown with low or high levels of N fertilization, were labeled with ¹⁵NO₃⁻/¹⁴NO₃⁻ from 2 h to more than 20 d. In both treatments, the tracer time course in N imported into the growth zones fitted a two-pool model (r² > 0.99). This consisted of a "substrate pool," which received N from current uptake and supplied the growth zone, and a recycling/mobilizing "store," which exchanged with the substrate pool. N deficiency halved the leaf elongation rate, decreased N import into the growth zone, lengthened the delay between tracer uptake and its arrival in the growth zone (2.2 h versus 0.9 h), slowed the turnover of the substrate pool (half-life of 3.2 h versus 0.6 h), and increased its size (12.4 μg versus 5.9 μg). The store contained the equivalent of approximately 10 times (low N) and approximately five times (high N) the total daily N import into the growth zone. Its turnover agreed with that of protein turnover. Remarkably, the relative contribution of mobilization to leaf growth was large and similar (approximately 45%) in both treatments. We conclude that turnover and size of the substrate pool are related to the sink strength of the growth zone, whereas the contribution of the store is influenced by partitioning between sinks.

A size-mediated effect can compensate for transient chilling stress affecting maize (Zea mays) leaf extension

*In this study, we examined the impact of transient chilling in maize (Zea mays). We investigated the respective roles of the direct effects of stressing temperatures and indirect whorl size-mediated effects on the growth of leaves chilled at various stages of development. *Cell production, individual leaf extension and final leaf size of plants grown in a glasshouse under three temperature regimes (a control and two short chilling transfers) were studied using two genotypes contrasting in terms of their architecture. *The kinetics of all the leaves emerging after the stress were affected, but not all final leaf lengths were affected. No size-mediated propagation of an initial growth reduction was observed, but a size-mediated effect was associated with a longer duration of leaf elongation which compensated for reduced leaf elongation rates when leaves were stressed during their early growth. Both cell division and cell expansion contributed to explaining cold-induced responses at the leaf level. *These results demonstrate that leaf elongation kinetics and final leaf length are under the control of processes at the n - 1 (cell proliferation and expansion) and n + 1 (whorl size signal) scales. Both levels may respond to chilling stress with different time lags, making it possible to buffer short-term responses.

How meristem plasticity in response to soil nutrients and light affects plant growth in four Festuca grass species

Investigation of responses of meristems to environmental conditions is important for understanding the mechanisms and consequences of plant phenotypic plasticity. Here, we examined how meristem plasticity to light and soil nutrients affected leaf growth and relative growth rate (RGR) in fast- and slow-growing Festuca grass species. Activity in shoot apical meristems was measured by leaf appearance rate, and that in leaf meristems by the duration and rate of cell production, which was further divided into single cell cycle time and the number of dividing cells. Light and soil nutrients affected activity in shoot apical meristems similarly. The high nutrient supply increased the number of dividing cells, which was responsible for enhancement of cell production rate; shaded conditions extended the duration of cell production. As a result, leaf length increased under high nutrient and shaded conditions. The RGR was correlated positively with the total meristem size of the shoot under a low nutrient supply, implying inhibition of RGR by cell production under nutrient-limited conditions. Fast-growing species were more plastic for cell production rate and specific leaf area (SLA) but less plastic for RGR than slow-growing species. This study demonstrates that meristem plasticity plays key roles in characterizing environmental responses of plant species.

Environmental effects on spatial and temporal patterns of leaf and root growth

Leaves and roots live in dramatically different habitats, but are parts of the same organism. Automated image processing of time-lapse records of these organs has led to understanding of spatial and temporal patterns of growth on time scales from minutes to weeks. Growth zones in roots and leaves show distinct patterns during a diel cycle (24 h period). In dicot leaves under nonstressful conditions these patterns are characterized by endogenous rhythms, sometimes superimposed upon morphogenesis driven by environmental variation. In roots and monocot leaves the growth patterns depend more strongly on environmental fluctuations. Because the impact of spatial variations and temporal fluctuations of above- and belowground environmental parameters must be processed by the plant body as an entire system whose individual modules interact on different levels, growth reactions of individual modules are often highly nonlinear. A mechanistic understanding of plant resource use efficiency and performance in a dynamically fluctuating environment therefore requires an accurate analysis of leaf and root growth patterns in conjunction with knowledge of major intraplant communication systems and metabolic pathways.

A study of ryegrass architecture as a self-regulated system, using functional-structural plant modelling

The canopy structure of grasslands is a major determinant of their use-value, as it affects the quantity and quality of the forage removed when mowed or grazed. The structure of this canopy is determined by individual plant architecture, which is highly sensitive to both environmental variations and management practices such as cutting regimes. In the case of perennial ryegrass (Lolium perenne L.), this architectural plasticity may partially be mediated by a self-regulation process, i.e. the actual state of the architecture (e.g. length of the pseudostem) may indirectly control some morphogenetic processes. To test the robustness of this hypothesis, we designed an exploratory model of ryegrass morphogenesis exhibiting this cybernetic behaviour. This functional-structural model is based on the L-system formalism. It was able to capture satisfactorily the major quantitative architectural traits of ryegrass under non-limiting growing conditions and under a cutting constraint. From these simulation results it appears that (i) self-regulation rules could be of practical use to ryegrass modelling, and (ii) when activated in an integrated model, they are not markedly incompatible with observations.

Nitrogen deficiency inhibits leaf blade growth in Lolium perenne by increasing cell cycle duration and decreasing mitotic and post-mitotic growth rates

Nitrogen deficiency severely inhibits leaf growth. This response was analysed at the cellular level by growing Lolium perenne L. under 7.5 mM (high) or 1 mM (low) nitrate supply, and performing a kinematic analysis to assess the effect of nitrogen status on cell proliferation and cell growth in the leaf blade epidermis. Low nitrogen supply reduced leaf elongation rate (LER) by 43% through a similar decrease in the cell production rate and final cell length. The former was entirely because of a decreased average cell division rate (0.023 versus 0.032 h(-1)) and thus longer cell cycle duration (30 versus 22 h). Nitrogen status did not affect the number of division cycles of the initial cell's progeny (5.7), and accordingly the meristematic cell number (53). Meristematic cell length was unaffected by nitrogen deficiency, implying that the division and mitotic growth rates were equally impaired. The shorter mature cell length arose from a considerably reduced post-mitotic growth rate (0.033 versus 0.049 h(-1)). But, nitrogen stress did not affect the position where elongation stopped, and increased cell elongation duration. In conclusion, nitrogen deficiency limited leaf growth by increasing the cell cycle duration and decreasing mitotic and post-mitotic elongation rates, delaying cell maturation.

A novel image-analysis technique for kinematic study of growth and curvature

Kinematic analysis has provided important insights into the biology of growth by revealing the distribution of expansion within growing organs. Modern methods of kinematic analysis have made use of new image-tracking algorithms and computer-assisted evaluation, but these methods have yet to be adapted for examination of growth in a variety of plant species or for analysis of graviresponse. Therefore, a new image-analysis program, KineRoot, was developed to study spatio-temporal patterns of growth and curvature of roots. Graphite particles sprinkled on the roots create random patterns that can be followed by image analysis. KineRoot tracks the displacement of patterns created by the graphite particles over space and time using three search algorithms. Following pattern tracking, the edges of the roots are identified automatically by an edge detection algorithm that provides root diameter and root midline. Local growth rate of the root is measured by projecting the tracked points on the midline. From the shape of the root midline, root curvature is calculated. By combining curvature measurement with root diameter, the differential growth ratio between the greater and lesser curvature edges of a bending root is calculated. KineRoot is capable of analyzing a large number of images to generate local root growth and root curvature data over several hours, permitting kinematic analysis of growth and gravitropic responses for a variety of root types.

Phosphorus deficiency decreases cell division and elongation in grass leaves

Leaf growth in monocotyledons results from the flux of newly born cells out of the division zone and into the adjacent elongation-only zone, where cells reach their final length. We used a kinematic method to analyze the effect of phosphorus nutrition status on cell division and elongation parameters in the epidermis of Lolium perenne. Phosphorus deficiency reduced the leaf elongation rate by 39% due to decreases in the cell production rate (-19%) and final cell length (-20%). The former was solely due to a lower average cell division rate (0.028 versus 0.046 cell cell(-1) h(-1)) and, thus, a lengthened average cell cycle duration (25 versus 15 h). The number of division cycles of the initial cell progeny (five to six) and, as a result, the number of meristematic cells (32-64) and division zone length were independent of phosphorus status. Accordingly, low-phosphorus cells maintained meristematic activity longer. Lack of effect of phosphorus deficiency on meristematic cell length implies that a lower division rate was matched to a lower elongation rate. Phosphorus deficiency did not affect the elongation-only zone length, thus leading to longer cell elongation duration (99 versus 75 h). However, the substantially reduced postmitotic average relative elongation rate (0.045 versus 0.064 mm mm(-1) h(-1)) resulted in shorter mature cells. In summary, phosphorus deficiency did not affect the general controls of cell morphogenesis, but, by slowing down the rates of cell division and expansion, it slowed down its pace.

Arbuscular mycorrhizal colonization on carbon economy in perennial ryegrass: quantification by 13CO2/12CO2 steady-state labelling and gas exchange

Effects of the arbuscular mycorrhizal fungus (AMF) Glomus hoi on the carbon economy of perennial ryegrass (Lolium perenne) were investigated by comparing nonmycorrhizal and mycorrhizal plants of the same size, morphology and phosphorus status. Plants were grown in the presence of CO2 sources with different C isotope composition (delta13C -1 or -44). Relative respiration and gross photosynthesis rates, and belowground allocation of C assimilated during one light period ('new C'), as well as its contribution to respiration, were quantified by the concerted use of 13CO2/12CO2 steady-state labelling and 13CO2/12CO2 gas-exchange techniques. AMF (G. hoi) enhanced the relative respiration rate of the root + soil system by 16%, inducing an extra C flow amounting to 3% of daily gross photosynthesis. Total C flow into AMF growth and respiration was estimated at < 8% of daily gross photosynthesis. This was associated with a greater amount of new C allocated belowground and respired in mycorrhizal plants. AMF colonization affected the sources supplying belowground respiration, indicating a greater importance of plant C stores in supplying respiration and/or the participation of storage pools within fungal tissues. When ontogenetic and nutritional effects were accounted for, AMF increased belowground C costs, which were not compensated by increased photosynthesis rates. Therefore the instantaneous relative growth rate was lower in mycorrhizal plants.