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Assour HR, Ashman TL, Turcotte MM. Neopolyploidy-induced changes in giant duckweed (Spirodela polyrhiza) alter herbivore preference and performance and plant population performance. AMERICAN JOURNAL OF BOTANY 2024; 111:e16301. [PMID: 38468124 DOI: 10.1002/ajb2.16301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 02/01/2024] [Accepted: 02/02/2024] [Indexed: 03/13/2024]
Abstract
PREMISE Polyploidy is a widespread mutational process in angiosperms that may alter population performance of not only plants but also their interacting species. Yet, knowledge of whether polyploidy affects plant-herbivore dynamics is scarce. Here, we tested whether aphid herbivores exhibit preference for diploid or neopolyploid plants, whether polyploidy impacts plant and herbivore performance, and whether these interactions depend on the plant genetic background. METHODS Using independently synthesized neotetraploid strains paired with their diploid progenitors of greater duckweed (Spirodela polyrhiza), we evaluated the effect of neopolyploidy on duckweed's interaction with the water-lily aphid (Rhopalosiphum nymphaeae). Using paired-choice experiments, we evaluated feeding preference of the herbivore. We then evaluated the consequences of polyploidy on aphid and plant performance by measuring population growth over multiple generations. RESULTS Aphids preferred neopolyploids when plants were provided at equal abundances but not at equal surface areas, suggesting the role of plant population surface area in driving this preference. Additionally, neopolyploidy increased aphid population performance, but this result was dependent on the plant's genetic lineage. Lastly, the impact of herbivory on neopolyploid vs. diploid duckweed varied greatly with genetic lineage, where neopolyploids appeared to be variably tolerant compared to diploids, sometimes mirroring the effect on herbivore performance. CONCLUSIONS By experimentally testing the impacts of polyploidy on trophic species interactions, we showed that polyploidization can impact the preference and performance of herbivores on their plant hosts. These results have significant implications for the establishment and persistence of plants and herbivores in the face of plant polyploidy.
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Affiliation(s)
- Hannah R Assour
- Department of Biological Sciences, University of Pittsburgh, Dietrich School of Arts and Sciences, Pittsburgh, 15260, PA, USA
| | - Tia-Lynn Ashman
- Department of Biological Sciences, University of Pittsburgh, Dietrich School of Arts and Sciences, Pittsburgh, 15260, PA, USA
| | - Martin M Turcotte
- Department of Biological Sciences, University of Pittsburgh, Dietrich School of Arts and Sciences, Pittsburgh, 15260, PA, USA
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2
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Zhang X, Zheng Z, Wang J, Li Y, Gao Y, Li L, Pang Y, Bian F. In vitro induction of tetraploids and their phenotypic and transcriptome analysis in Glehnia littoralis. BMC PLANT BIOLOGY 2024; 24:439. [PMID: 38778255 PMCID: PMC11110393 DOI: 10.1186/s12870-024-05154-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Accepted: 05/15/2024] [Indexed: 05/25/2024]
Abstract
BACKGROUND Glehnia littoralis is a medicinal and edible plant species having commercial value and has several hundred years of cultivation history. Polyploid breeding is one of the most important and fastest ways to generate novel varieties. To obtain tetraploids of G. littoralis in vitro, colchicine treatment was given to the seeds and then were screened based on morphology, flow cytometry, and root tip pressing assays. Furthermore, transcriptome analysis was performed to identity the differentially expressed genes associated with phenotypic changes in tetraploid G. littoralis. RESULTS The results showed that 0.05% (w/v) colchicine treatment for 48 h was effective in inducing tetraploids in G. littoralis. The tetraploid G. littoralis (2n = 4x = 44) was superior in leaf area, leaf thickness, petiole diameter, SPAD value (Chl SPAD), stomatal size, epidermal tissues thickness, palisade tissues thickness, and spongy tissues thickness to the diploid ones, while the stomatal density of tetraploids was significantly lower. Transcriptome sequencing revealed, a total of 1336 differentially expressed genes (DEGs) between tetraploids and diploids. Chromosome doubling may lead to DNA content change and gene dosage effect, which directly affects changes in quantitative traits, with changes such as increased chlorophyll content, larger stomata and thicker tissue of leaves. Several up-regulated DEGs were found related to growth and development in tetraploid G. littoralis such as CKI, PPDK, hisD and MDP1. KEGG pathway enrichment analyses showed that most of DEGs were enriched in metabolic pathways. CONCLUSIONS This is the first report of the successful induction of tetraploids in G. littoralis. The information presented in this study facilitate breeding programs and molecular breeding of G. littoralis varieties.
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Affiliation(s)
- Xin Zhang
- College of Life Science, Yantai University, Yantai, Shandong, 264005, China
| | - Ziyu Zheng
- College of Life Science, Yantai University, Yantai, Shandong, 264005, China
| | - Jing Wang
- College of Life Science, Yantai University, Yantai, Shandong, 264005, China
| | - Yuwen Li
- College of Life Science, Yantai University, Yantai, Shandong, 264005, China
| | - Yan Gao
- Kunyushan Forest Farm, Yantai, Shandong, 264112, China
| | - Lixia Li
- College of Life Science, Yantai University, Yantai, Shandong, 264005, China
| | - Yujuan Pang
- College of Life Science, Yantai University, Yantai, Shandong, 264005, China
| | - Fuhua Bian
- College of Life Science, Yantai University, Yantai, Shandong, 264005, China.
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3
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Bhat S, Sharma A, Sharma P, Singh K, Kundan M, Fayaz M, Wajid MA, Gairola S, Misra P. Development and analysis of de novo transcriptome assemblies of multiple genotypes of Cymbopogon spp. reveal candidate genes involved in the biosynthesis of aromatic monoterpenes. Int J Biol Macromol 2023; 253:127508. [PMID: 37865377 DOI: 10.1016/j.ijbiomac.2023.127508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Revised: 09/25/2023] [Accepted: 10/07/2023] [Indexed: 10/23/2023]
Abstract
Despite the high economic value of the monoterpene-rich essential oils from different genotypes of Cymbopogon, the knowledge about the genes and metabolic route(s) involved in the biosynthesis of aromatic monoterpenes in this genus is limited. In the present study, a comprehensive transcriptome analysis of four genotypes of Cymbopogon, displaying diverse quantitative and qualitative profiles of volatile monoterpenes in their essential oils has been carried out. The comparative analysis of the deduced protein sequences corresponding to the transcriptomes of the four genotypes revealed 4609 genotype-specific orthogroups, which might contribute in defining genotype-specific phenotypes. The transcriptome data mining led to the identification of unigenes involved in the isoprenogenesis. The homology searches, combined with the phylogenetic and expression analyses provided information about candidate genes concerning the biosynthesis of monoterpene aldehyde, monoterpene alcohol, and monoterpene esters. In addition, the present study suggests a potential role of geranial reductase like enzyme in the biosynthesis of monoterpene aldehyde in Cymbopogon spp. The detailed analysis of the candidate pathway genes suggested that multiple enzymatic routes might be involved in the biosynthesis of aromatic monoterpenes in the genus Cymbopogon. The present study provides deeper insights into the biosynthesis of monoterpenes, which will be useful for the genetic improvement of these aromatic grasses.
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Affiliation(s)
- Sheetal Bhat
- Plant Sciences and Agrotechnology Division, CSIR-Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Arti Sharma
- Plant Sciences and Agrotechnology Division, CSIR-Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India
| | - Priyanka Sharma
- Plant Sciences and Agrotechnology Division, CSIR-Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Kanwaljeet Singh
- Plant Sciences and Agrotechnology Division, CSIR-Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India
| | - Maridul Kundan
- Plant Sciences and Agrotechnology Division, CSIR-Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Mohd Fayaz
- Plant Sciences and Agrotechnology Division, CSIR-Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Mir Abdul Wajid
- Plant Sciences and Agrotechnology Division, CSIR-Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Sumeet Gairola
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India; Department of Botany and Microbiology, HNB Garhwal University, Srinagar, Garhwal 246174, Uttarakhand, India.
| | - Prashant Misra
- Plant Sciences and Agrotechnology Division, CSIR-Indian Institute of Integrative Medicine, Canal Road, Jammu 180001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
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4
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Wu YJ, Chen SY, Hsu FC, Wu WL, Hsieh TF, Su JF, Lai YH, Lai PC, Chen WH, Chen HH. PeCIN8 expression correlates with flower size and resistance to yellow leaf disease in Phalaenopsis orchids. BMC PLANT BIOLOGY 2023; 23:545. [PMID: 37936061 PMCID: PMC10629045 DOI: 10.1186/s12870-023-04567-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 10/27/2023] [Indexed: 11/09/2023]
Abstract
BACKGROUND The orchid industry has seen a recent surge in export values due to the floral morphology and versatile applications of orchids in various markets for medicinal, food additive, and cosmetic usages. However, plant-related diseases, including the yellow leaf disease caused by Fusarium solani, have caused significant losses in the production value of Phalaenopsis (up to 30%). RESULTS In this study, 203 Phalaenopsis cultivars were collected from 10 local orchid nurseries, and their disease severity index and correlation with flower size were evaluated. Larger flowers had weaker resistance to yellow leaf disease, and smaller flowers had stronger resistance. For the genetic relationship of disease resistance to flower size, the genetic background of all cultivars was assessed using OrchidWiz Orchid Database Software and principal component analysis. In addition, we identified the orthologous genes of BraTCP4, namely PeIN6, PeCIN7, and PeCIN8, which are involved in resistance to pathogens, and analyzed their gene expression. The expression of PeCIN8 was significantly higher in the most resistant cultivars (A7403, A11294, and A2945) relative to the most susceptible cultivars (A10670, A6390, and A10746). CONCLUSIONS We identified a correlation between flower size and resistance to yellow leaf disease in Phalaenopsis orchids. The expression of PeCIN8 may regulate the two traits in the disease-resistant cultivars. These findings can be applied to Phalaenopsis breeding programs to develop resistant cultivars against yellow leaf disease.
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Affiliation(s)
- Yan-Jeng Wu
- Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan
| | - Shu-Yun Chen
- Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan
- Present Address: Department of Agronomy, National Chung-Hsin University, Taichung, Taiwan
| | - Fu-Cheng Hsu
- Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan
| | - Wen-Luan Wu
- Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan
| | - Ting-Fang Hsieh
- Plant Pathology Division, Taiwan Agricultural Research Institute, Ministry of Agriculture, Taichung, 413008, Taiwan
| | - Jiunn-Feng Su
- Plant Pathology Division, Taiwan Agricultural Research Institute, Ministry of Agriculture, Taichung, 413008, Taiwan
| | - Yung-Hsiang Lai
- Taida Horticultural Co., Ltd., Dacun Township, Changhua County, 515002, Taiwan
| | - Pen-Chih Lai
- Taida Horticultural Co., Ltd., Dacun Township, Changhua County, 515002, Taiwan
| | - Wen-Huei Chen
- Orchid Research and Development Center, National Cheng Kung University, Tainan, 701, Taiwan
| | - Hong-Hwa Chen
- Department of Life Sciences, National Cheng Kung University, Tainan, 701, Taiwan.
- Orchid Research and Development Center, National Cheng Kung University, Tainan, 701, Taiwan.
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Anneberg TJ, Turcotte MM, Ashman TL. Plant neopolyploidy and genetic background differentiate the microbiome of duckweed across a variety of natural freshwater sources. Mol Ecol 2023; 32:5849-5863. [PMID: 37750335 DOI: 10.1111/mec.17142] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Accepted: 09/06/2023] [Indexed: 09/27/2023]
Abstract
Whole-genome duplication has long been appreciated for its role in driving phenotypic novelty in plants, often altering the way organisms interface with the abiotic environment. Only recently, however, have we begun to investigate how polyploidy influences interactions of plants with other species, despite the biotic niche being predicted as one of the main determinants of polyploid establishment. Nevertheless, we lack information about how polyploidy affects the diversity and composition of the microbial taxa that colonize plants, and whether this is genotype-dependent and repeatable across natural environments. This information is a first step towards understanding whether the microbiome contributes to polyploid establishment. We, thus, tested the immediate effect of polyploidy on the diversity and composition of the bacterial microbiome of the aquatic plant Spirodela polyrhiza using four pairs of diploids and synthetic autotetraploids. Under controlled conditions, axenic plants were inoculated with pond waters collected from 10 field sites across a broad environmental gradient. Autotetraploids hosted 4%-11% greater bacterial taxonomic and phylogenetic diversity than their diploid progenitors. Polyploidy, along with its interactions with the inoculum source and genetic lineage, collectively explained 7% of the total variation in microbiome composition. Furthermore, polyploidy broadened the core microbiome, with autotetraploids having 15 unique bacterial taxa in addition to the 55 they shared with diploids. Our results show that whole-genome duplication directly leads to novelty in the plant microbiome and importantly that the effect is dependent on the genetic ancestry of the polyploid and generalizable over many environmental contexts.
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Affiliation(s)
- Thomas J Anneberg
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Martin M Turcotte
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Tia-Lynn Ashman
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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Escrich A, Hidalgo D, Bonfill M, Palazon J, Sanchez-Muñoz R, Moyano E. Polyploidy as a strategy to increase taxane production in yew cell cultures: Obtaining and characterizing a Taxus baccata tetraploid cell line. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2023; 334:111776. [PMID: 37343603 DOI: 10.1016/j.plantsci.2023.111776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 05/24/2023] [Accepted: 06/14/2023] [Indexed: 06/23/2023]
Abstract
Novel approaches to optimize the production of plant specialized metabolites are crucial to reach maximum productivity of plant biofactories. Plant polyploidization frequently enhances protein synthesis and thereby increases the biosynthesis of specialized metabolites. Paclitaxel is a valuable anticancer agent scarcely produced in nature. Therefore, plant biofactories represent a sustainable alternative source of this compound and related taxanes. With the aim of improving the productivity of Taxus spp. cell cultures, we induced polyploidy in vitro by treating immature embryos of Taxus baccata with colchicine. To obtain the polyploid cell lines, calli were induced from T. baccata plantlets previously treated with colchicine and ploidy levels were accurately identified using flow cytometry. In terms of cell morphology, tetraploid cells were about 3-fold bigger than the diploid cells. The expression of taxane pathway genes was higher in the tetraploid cell line compared to the diploid cells. Moreover, taxane production was 6.2-fold higher and the production peak was achieved 8 days earlier than in the diploid cell line, indicating a higher productivity. The obtained tetraploid cell line proved to be highly productive, constituting a step forward towards the development of a bio-sustainable production system for this chemotherapeutic drug.
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Affiliation(s)
- Ainoa Escrich
- Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Barcelona, Spain
| | - Diego Hidalgo
- Department of Biology, Healthcare and the Environment, Faculty of Pharmacy and Food Science, Universitat de Barcelona, Barcelona, Spain
| | - Mercedes Bonfill
- Department of Biology, Healthcare and the Environment, Faculty of Pharmacy and Food Science, Universitat de Barcelona, Barcelona, Spain
| | - Javier Palazon
- Department of Biology, Healthcare and the Environment, Faculty of Pharmacy and Food Science, Universitat de Barcelona, Barcelona, Spain
| | - Raul Sanchez-Muñoz
- Laboratory of Functional Plant Biology, Department of Biology, Ghent University, Ghent, Belgium.
| | - Elisabeth Moyano
- Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Barcelona, Spain.
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Quintanilla LG, Aranda I, Clemente-Moreno MJ, Pons-Perpinyà J, Gago J. Ecophysiological Differentiation among Two Resurrection Ferns and Their Allopolyploid Derivative. PLANTS (BASEL, SWITZERLAND) 2023; 12:1529. [PMID: 37050155 PMCID: PMC10096763 DOI: 10.3390/plants12071529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 03/27/2023] [Accepted: 03/30/2023] [Indexed: 06/19/2023]
Abstract
Theoretically, the coexistence of diploids and related polyploids is constrained by reproductive and competitive mechanisms. Although niche differentiation can explain the commonly observed co-occurrence of cytotypes, the underlying ecophysiological differentiation among cytotypes has hardly been studied. We compared the leaf functional traits of the allotetraploid resurrection fern Oeosporangium tinaei (HHPP) and its diploid parents, O. hispanicum (HH) and O. pteridioides (PP), coexisting in the same location. Our experimental results showed that all three species can recover physiological status after severe leaf dehydration, which confirms their 'resurrection' ability. However, compared with PP, HH had much higher investment per unit area of light-capturing surface, lower carbon assimilation rate per unit mass for the same midday water potential, higher non-enzymatic antioxidant capacity, higher carbon content, and lower contents of nitrogen, phosphorus, and other macronutrients. These traits allow HH to live in microhabitats with less availability of water and nutrients (rock crevices) and to have a greater capacity for resurrection. The higher assimilation capacity and lower antioxidant capacity of PP explain its more humid and nutrient-rich microhabitats (shallow soils). HHPP traits were mostly intermediate between those of HH and PP, and they allow the allotetraploid to occupy the free niche space left by the diploids.
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Affiliation(s)
- Luis G. Quintanilla
- School of Environmental Sciences and Technology (ESCET), University Rey Juan Carlos, 28922 Móstoles, Spain
| | - Ismael Aranda
- National Institute for Agricultural and Food Research and Technology (INIA), Spanish National Research Council, 28040 Madrid, Spain
| | - María José Clemente-Moreno
- Agro-Environmental and Water Economics Institute (INAGEA), University of the Balearic Islands, 07122 Palma de Mallorca, Spain
| | - Joan Pons-Perpinyà
- Agro-Environmental and Water Economics Institute (INAGEA), University of the Balearic Islands, 07122 Palma de Mallorca, Spain
| | - Jorge Gago
- Agro-Environmental and Water Economics Institute (INAGEA), University of the Balearic Islands, 07122 Palma de Mallorca, Spain
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8
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Buono D, Albach DC. Infrared spectroscopy for ploidy estimation: An example in two species of Veronica using fresh and herbarium specimens. APPLICATIONS IN PLANT SCIENCES 2023; 11:e11516. [PMID: 37051581 PMCID: PMC10083463 DOI: 10.1002/aps3.11516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Accepted: 12/20/2022] [Indexed: 06/19/2023]
Abstract
PREMISE Polyploidy has become a central factor in plant evolutionary biological research in recent decades. Methods such as flow cytometry have revealed the widespread occurrence of polyploidy; however, its inference relies on expensive lab equipment and is largely restricted to fresh or recently dried material. METHODS Here, we assess the applicability of infrared spectroscopy to infer ploidy in two related species of Veronica (Plantaginaceae). Infrared spectroscopy relies on differences in the absorbance of tissues, which could be affected by primary and secondary metabolites related to polyploidy. We sampled 33 living plants from the greenhouse and 74 herbarium specimens with ploidy known through flow cytometrical measurements and analyzed the resulting spectra using discriminant analysis of principal components (DAPC) and neural network (NNET) classifiers. RESULTS Living material of both species combined was classified with 70% (DAPC) to 75% (NNET) accuracy, whereas herbarium material was classified with 84% (DAPC) to 85% (NNET) accuracy. Analyzing both species separately resulted in less clear results. DISCUSSION Infrared spectroscopy is quite reliable but is not a certain method for assessing intraspecific ploidy level differences in two species of Veronica. More accurate inferences rely on large training data sets and herbarium material. This study demonstrates an important way to expand the field of polyploid research to herbaria.
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Affiliation(s)
- Daniele Buono
- AG Plant Biodiversity and EvolutionCarl von Ossietzky UniversityAmmerlaender Heerstrasse 114‐11826129OldenburgGermany
- Institute of BotanyTechnical University of DresdenObergraben 601097DresdenGermany
- Present address:
Systematik, Biodiversität und Evolution der PflanzenLudwig‐Maximilians‐UniversityMenzinger Str. 6780638MunichGermany
| | - Dirk C. Albach
- AG Plant Biodiversity and EvolutionCarl von Ossietzky UniversityAmmerlaender Heerstrasse 114‐11826129OldenburgGermany
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Mudassir Jeelani S, Shahnawaz M, Prakash Gupta A, Lattoo SK. Phytochemical Diversity in Relation to Cytogenetic Variability in Inula racemosa Hook.f., an Endangered Medicinal Plant of Himalayas. Chem Biodivers 2022; 19:e202200486. [PMID: 36263992 DOI: 10.1002/cbdv.202200486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Accepted: 10/18/2022] [Indexed: 12/27/2022]
Abstract
Inula racemosa, a resourceful critically endangered medicinal herb in the Himalayas is traditionally utilized to cure various human disorders. The species is a wealthy source of sesquiterpene lactones has many pharmacological properties. To quantify and identify the best genetic stocks for a maximum build-up of desired metabolites (isoalantolactone and alantolactone) among existent cytotypes in the species, LC-MS/MS analysis was made. The other comprehensive experiments carried out at present included detailed meiotic examinations of different populations collected from different areas of Kashmir Himalayas. The results presented the occurrence of variable chromosome numbers as n=10 and n=20 in different populations, but the tetraploid cytotype (n=20) is new for the species. The LC-MS/MS investigation revealed significant variability in the content of sesquiterpene lactones in different plant tissues (stem, leaf, and root). An upsurge in the quantity of isoalantolactone and alantolactone was noticed with increasing ploidy levels along the increasing altitudes. Therefore, a habit to accumulate abundant quantities of secondary metabolites and increased adaptability by species/cytotypes thriving at higher altitudes is seen among tetraploid cytotypes during the present investigation. Also, the chromosomal variations seem to enhance the flexibility of polyploid species primarily at upper elevations. Thus, the present study strongly provides quantification of elite cytotypes/chemotypes with optimum concentration of secondary metabolites.
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Affiliation(s)
- Syed Mudassir Jeelani
- Plant Biotechnology Division, CSIR- Indian Institute of Integrative Medicine, Canal Road, Jammu, 180001, India
| | - Mohd Shahnawaz
- Plant Biotechnology Division, CSIR- Indian Institute of Integrative Medicine, Canal Road, Jammu, 180001, India
| | - Ajai Prakash Gupta
- Quality Control and Quality Assurance Division, CSIR- Indian Institute of Integrative Medicine, Canal Road, Jammu, 180001, India
| | - Surrinder K Lattoo
- Plant Biotechnology Division, CSIR- Indian Institute of Integrative Medicine, Canal Road, Jammu, 180001, India
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10
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Sikdar A, Sharma U, Barua R, Igamberdiev AU, Debnath SC. Epigenomic insight of lingonberry and health-promoting traits during micropropagation. Sci Rep 2022; 12:12487. [PMID: 35864145 PMCID: PMC9304418 DOI: 10.1038/s41598-022-16530-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2021] [Accepted: 07/12/2022] [Indexed: 11/09/2022] Open
Abstract
Epigenetic variation plays a role in developmental gene regulation and responses to the environment. An efficient interaction of zeatin-induced cytosine methylation and secondary compounds has been displayed for the first time in tissue-culture shoots/plants of lingonberry (Vaccinium vitis-idaea L.) cultivar Erntedank in vitro (NC1, in a liquid medium; NC2, on a semi-solid medium), ex vitro (NC3, node culture-derived plants; LC1, leaf culture-derived plants) and its cutting-propagated (ED) plants. Through methylation-sensitive amplification polymorphism (MSAP) assay, we observed highest methylated sites in leaf regenerants (LC1) from all primer combinations (108 bands), along with the highest secondary metabolites. The four types of tissue culture-derived shoots/plants (NC1, NC2, NC3, LC1) showed higher methylation bands than cutting propagated donor plants (ED) that exhibited 79 bands of methylation, which is comparatively low. Our study showed more methylation in micropropagated shoots/plants than those derived from ED plants. On the contrary, we observed higher secondary metabolites in ED plants but comparatively less in micropropagated shoots (NC1, NC2) and plants (NC3, LC1).
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Affiliation(s)
- Arindam Sikdar
- St. John's Research and Development Centre, Agriculture and Agri-Food Canada, St. John's, Newfoundland and Labrador, Canada.,Department of Biology, Memorial University of Newfoundland, St. John's, Newfoundland and Labrador, Canada
| | - Umanath Sharma
- St. John's Research and Development Centre, Agriculture and Agri-Food Canada, St. John's, Newfoundland and Labrador, Canada.,Department of Biology, Memorial University of Newfoundland, St. John's, Newfoundland and Labrador, Canada
| | - Rajesh Barua
- St. John's Research and Development Centre, Agriculture and Agri-Food Canada, St. John's, Newfoundland and Labrador, Canada.,Department of Biology, Memorial University of Newfoundland, St. John's, Newfoundland and Labrador, Canada
| | - Abir U Igamberdiev
- Department of Biology, Memorial University of Newfoundland, St. John's, Newfoundland and Labrador, Canada
| | - Samir C Debnath
- St. John's Research and Development Centre, Agriculture and Agri-Food Canada, St. John's, Newfoundland and Labrador, Canada.
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Shah S, Rastogi S, Vashisth D, Rout PK, Lal RK, Lavania UC, Shasany AK. Altered Developmental and Metabolic Gene Expression in Basil Interspecific Hybrids. PLANTS (BASEL, SWITZERLAND) 2022; 11:1873. [PMID: 35890507 PMCID: PMC9321874 DOI: 10.3390/plants11141873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Revised: 06/07/2022] [Accepted: 06/08/2022] [Indexed: 06/15/2023]
Abstract
To understand the altered developmental changes and associated gene expression in inter-genomic combinations, a study was planned in two diverse yet closely related species of Ocimum, targeting their hybrid F1 and amphidiploids. The existing developmental variations between F1 and amphidiploids was analyzed through phenotypical and anatomical assessments. The absence of 8330 transcripts of F1 in amphidiploids and the exclusive presence of two transcripts related to WNK lysine-deficient protein kinase and geranylgeranyl transferase type-2 subunit beta 1-like proteins in amphidiploids provided a set of genes to compare the suppressed and activated functions between F1 and amphidiploids. The estimation of eugenol and methyleugenol, flavonoid, lignin and chlorophyll content was correlated with the average FPKM and differential gene expression values and further validated through qRT-PCR. Differentially expressed genes of stomatal patterning and development explained the higher density of stomata in F1 and the larger size of stomata in amphidiploids. Gene expression study of several transcription factors putatively involved in the growth and developmental processes of plants clearly amalgamates the transcriptome data linking the phenotypic differences in F1 and amphidiploids. This investigation describes the influence of interspecific hybridization on genes and transcription factors leading to developmental changes and alleviation of intergenomic instability in amphidiploids.
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Affiliation(s)
- Saumya Shah
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow 226015, India; (S.S.); (S.R.); (D.V.)
| | - Shubhra Rastogi
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow 226015, India; (S.S.); (S.R.); (D.V.)
| | - Divya Vashisth
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow 226015, India; (S.S.); (S.R.); (D.V.)
| | - Prashant Kumar Rout
- Department of Phytochemistry, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow 226015, India;
| | - Raj Kishori Lal
- Department of Genetics and Plant Breeding, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow 226015, India; (R.K.L.); (U.C.L.)
| | - Umesh Chandra Lavania
- Department of Genetics and Plant Breeding, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow 226015, India; (R.K.L.); (U.C.L.)
- Department of Botany, University of Lucknow, Lucknow 226007, India
| | - Ajit Kumar Shasany
- Biotechnology Division, CSIR-Central Institute of Medicinal and Aromatic Plants, Lucknow 226015, India; (S.S.); (S.R.); (D.V.)
- ICAR-National Institute for Plant Biotechnology (NIPB), Pusa Campus, New Delhi 110012, India
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12
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Vimala Y, Lavania UC, Singh M, Lavania S, Srivastava S, Basu S. Realization of Lodging Tolerance in the Aromatic Grass, Cymbopogon khasianus Through Ploidy Intervention. FRONTIERS IN PLANT SCIENCE 2022; 13:908659. [PMID: 35615136 PMCID: PMC9125236 DOI: 10.3389/fpls.2022.908659] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Accepted: 04/20/2022] [Indexed: 06/15/2023]
Abstract
Artificial polyploidy that brings about increase in cell size confers changes in histo-morphology leading to altered phenotype, causing changes in physiological attributes and enhanced concentration of secondary metabolites. The altered phenotype is generally a manifestation of tissue hardiness reflected as robust plant type. Based on a case study undertaken on an industrially important grass, Cymbopogon khasianus (2n = 60) valued for its citral rich essential oil, here we report that the artificial polyploidy not only brings about enhancement in concentration of essential oil but also facilitates lodging tolerance. The latter is contributed by ploidy mediated changes that occur to the cells and tissues in various plant organs by way of increased wall thickening, tissue enhancement and epidermal depositions that enable robust features. An exhaustive illustrated account covering various micro-/macro-morphological, skeletal and histochemical features constituting growth and development vis-a-vis ploidy mediated changes is presented highlighting the novelties realized on account of induced polyploidy.
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Affiliation(s)
- Yerramilli Vimala
- Department of Botany, Chaudhary Charan Singh (CCS) University, Meerut, India
| | | | - Madhavi Singh
- Department of Botany, University of Lucknow, Lucknow, India
| | - Seshu Lavania
- Department of Botany, University of Lucknow, Lucknow, India
| | - Sarita Srivastava
- Department of Botany, Chowdhary Mahadev Prasad (CMP) College (Constituent College of Central University of Allahabad), Prayagraj, India
| | - Surochita Basu
- Department of Botany, Tripura University (A Central University), Agartala, India
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13
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Tel-Zur N. Breeding an underutilized fruit crop: a long-term program for Hylocereus. HORTICULTURE RESEARCH 2022; 9:uhac078. [PMID: 35707296 PMCID: PMC9189603 DOI: 10.1093/hr/uhac078] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Accepted: 03/17/2022] [Indexed: 06/15/2023]
Abstract
This review describes three decades of introduction, agro-technology development, breeding and selection of Hylocereus species, known as pitaya or dragon fruit, as an example of a holistic program aimed to develop the horticultural potential of a perennial underutilized fruit crop. Interspecific homoploid and interploid crosses and embryo rescue procedures produced improved hybrids, some of which have been released to farmers. Molecular tools and morphological and phenological comparisons between the parental species and the resulting hybrids provided valuable information on dominant/recessive traits and on genetic relationships that could be exploited for further hybridizations. In addition, Hylocereus were crossed with species of the closely related genus Selenicereus, producing valuable intergeneric hybrids. In situ chromosome doubling resulted in the production of autopolyploid lines, from which an understanding of the effect of increased ploidy on fruit traits and metabolomic profiles was obtained. Gamete-derived lines were produced, adding to our biobank homozygote lines that were subsequently used for further hybridization. Spontaneous chromosome doubling occurred in haploid gamete-derived Hylocereus monacanthus lines and in interspecific interploid Hylocereus megalanthus × H. undatus hybrids obtained from an embryo rescue procedure, resulting in plants with double the expected ploidy. Challenging technical problems were addressed by the development of protocols for DNA isolation, flow cytometry, in situ chromosome doubling, androgenesis, gynogenesis and embryo rescue following interspecific and interploidy crosses. Current research leading to the development of genomics and molecular tools, including a draft genome of H. undatus, is also presented. Perspectives for further development of Hylocereus species and hybrids are discussed.
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Wu J, Cheng X, Kong B, Zhou Q, Sang Y, Zhang P. In vitro octaploid induction of Populus hopeiensis with colchicine. BMC PLANT BIOLOGY 2022; 22:176. [PMID: 35387617 PMCID: PMC8985302 DOI: 10.1186/s12870-022-03571-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/12/2022] [Accepted: 03/31/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Autopolyploids, especially artificial lines, provide model systems for understanding the mechanisms of gene dosage effects on trait variation owing to their relatively uniform genetic background. Here, a protocol for in vitro octaploid induction of Populus hopeiensis from leaf blades with colchicine treatment was established through investigation of the effects of different pre-culture durations, colchicine concentrations, and exposure times. RESULTS We found that pre-culture duration, colchicine concentration, and exposure time had significant effects on the survival rate, shoot regeneration rate, and octaploid induction rate of P. hopeiensis leaf blades. The highest octaploid induction rate (8.61%) was observed when leaf blades pre-cultured for 9 days were treated for 4 days with 100 μM colchicine. The ploidy level of all regenerated plantlets was analyzed by flow cytometry and further confirmed by chromosome counting. A total of 14 octaploids were obtained. The stomatal length, width, and density of leaf blades significantly differed between tetraploid and octaploid plants. Compared with diploid and tetraploid plants, octaploids had a slower growth rate, smaller leaf blade size, and shorter internodes. CONCLUSIONS We established an effective protocol for inducing octaploids in vitro from autotetraploid P. hopeiensis leaf blades by colchicine treatment.
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Affiliation(s)
- Jian Wu
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, 100083, China
- Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Beijing Forestry University, Beijing, 100083, China
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
| | - Xuetong Cheng
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, 100083, China
- Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Beijing Forestry University, Beijing, 100083, China
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
| | - Bo Kong
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, 100083, China
- Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Beijing Forestry University, Beijing, 100083, China
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
| | - Qing Zhou
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, 100083, China
- Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Beijing Forestry University, Beijing, 100083, China
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
| | - Yaru Sang
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, 100083, China
- Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Beijing Forestry University, Beijing, 100083, China
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China
| | - Pingdong Zhang
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, 100083, China.
- Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Beijing Forestry University, Beijing, 100083, China.
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.
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15
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Zhao Z, Wei Y, Li L, Liu B, Yang K, Yang H, Li J. Chromosome doubling influences the morphological, physiological, biochemical and genetic traits related to essential oil biosynthesis of peppermint (Mentha piperita) under salinity stress. JOURNAL OF PLANT RESEARCH 2022; 135:93-104. [PMID: 34727276 DOI: 10.1007/s10265-021-01347-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Accepted: 09/15/2021] [Indexed: 06/13/2023]
Abstract
Peppermint (Mentha piperita L.) is an important medicinal aromatic plant. In this study, the morphology, physiology, biochemistry and gene expression of chromosomes doubling peppermint (D1 lines) were analyzed. The analysis showed that D1 lines had larger, thicker and darker leaves, and stronger roots when planted in the pots, but delayed growth in the field condition. Under NaCl stress, the D1 lines increased cell oxidative defense through more active antioxidant enzymes and decreased the oxidative damages of cell membrane, leading to a significantly greater survival rate and photosynthesis intensity than WT lines. The size and density of glandular trichomes of D1 lines was larger, which contributed to its higher essential oil yield. In addition, chromosome doubling reduced the inhibition of NaCl stress on essential oil yield and quality, through changing the expression of genes in the oil biosynthesis pathway. The traits of chromosome doubling peppermint provide new technical and theoretical evidence for peppermint germplasm improvement.
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Affiliation(s)
- Zhongjuan Zhao
- Shandong Province Key Laboratory of Applied Microbiology, Ecology Institute of Shandong Academy of Sciences, Qilu University of Technology, No. 28789, Jingshi East Road, Jinan City, 250103, Shandong Province, China
| | - Yanli Wei
- Shandong Province Key Laboratory of Applied Microbiology, Ecology Institute of Shandong Academy of Sciences, Qilu University of Technology, No. 28789, Jingshi East Road, Jinan City, 250103, Shandong Province, China
| | - Ling Li
- Shandong Province Key Laboratory of Applied Microbiology, Ecology Institute of Shandong Academy of Sciences, Qilu University of Technology, No. 28789, Jingshi East Road, Jinan City, 250103, Shandong Province, China
| | - Baojun Liu
- Shandong Province Key Laboratory of Applied Microbiology, Ecology Institute of Shandong Academy of Sciences, Qilu University of Technology, No. 28789, Jingshi East Road, Jinan City, 250103, Shandong Province, China
| | - Kai Yang
- Shandong Province Key Laboratory of Applied Microbiology, Ecology Institute of Shandong Academy of Sciences, Qilu University of Technology, No. 28789, Jingshi East Road, Jinan City, 250103, Shandong Province, China
| | - Hetong Yang
- Shandong Province Key Laboratory of Applied Microbiology, Ecology Institute of Shandong Academy of Sciences, Qilu University of Technology, No. 28789, Jingshi East Road, Jinan City, 250103, Shandong Province, China
| | - Jishun Li
- Shandong Province Key Laboratory of Applied Microbiology, Ecology Institute of Shandong Academy of Sciences, Qilu University of Technology, No. 28789, Jingshi East Road, Jinan City, 250103, Shandong Province, China.
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16
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da Silva AJ, Clarindo WR, Simiqueli GF, Praça-Fontes MM, Mendes LA, Martins GF, Borém A. Short-term changes related to autotetraploidy in essential oil composition of Eucalyptus benthamii Maiden & Cambage and its applications in different bioassays. Sci Rep 2021; 11:24408. [PMID: 34949763 PMCID: PMC8702542 DOI: 10.1038/s41598-021-03916-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Accepted: 12/13/2021] [Indexed: 11/10/2022] Open
Abstract
Some forest trees have been polyploidized to improve their traits and to supply new germplasms for breeding programs. As trees have a long juvenile stage, the early characterization of the chromosome set doubling effects is crucial for previous selection. Thus, we aimed to characterize the chemical variability of essential oils from diploid and autotetraploid germplasms (autotetraploid A and B) of Eucalyptus benthamii, as well as to evaluate their larvicidal and allelopathic effects. Autotetraploid A showed a higher essential oil yield than diploid and autotetraploid B, which did not differ quantitatively. Aromadendrene, viridiflorol and α-pinene were the major compounds in the diploid essential oil. In contrast, compounds were present in autotetraploids, such as 1,8-cineole, limonene, α-terpineol, and α-terpinyl-acetate. Essential oils from the diploid at 50-200 ppm were twice as larvicidal than those from autotetraploids against Aedes aegypti larvae. Considering the phytotoxicity bioassays using Lactuca sativa, essential oils from both ploidy levels affected root growth. Moreover, the essential oils inhibited shoot growth at all concentrations tested (187.5; 375; 750; 1500; and 3000 ppm). Autotetraploid A and B had the same effect on shoot growth as glyphosate. The essential oils had no cytogenotoxic effect on root meristematic cells of L. sativa, whereas phytotoxic potential was identified mainly in shoot growth. This work demonstrated a dramatic change in secondary metabolism (terpene composition) related to an increase in the ploidy level in Eucalyptus germplasms. In addition, we report the novelty of the chemical composition of essential oils among germplasms and their potential use as larvicidal and post-emergence weed control agents.
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Affiliation(s)
- Alex Junior da Silva
- Departament of Agronomy, Federal University of Viçosa, Viçosa, MG, ZIP 36570-900, Brazil
| | | | | | | | - Luiza Alves Mendes
- Departament of Chemistry, Federal University of Viçosa, Viçosa, MG, ZIP 36570-900, Brazil
| | | | - Aluízio Borém
- Departament of Agronomy, Federal University of Viçosa, Viçosa, MG, ZIP 36570-900, Brazil
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Tavan M, Sarikhani H, Mirjalili MH, Rigano MM, Azizi A. Triterpenic and phenolic acids production changed in Salvia officinalis via in vitro and in vivo polyploidization: A consequence of altered genes expression. PHYTOCHEMISTRY 2021; 189:112803. [PMID: 34144408 DOI: 10.1016/j.phytochem.2021.112803] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Revised: 04/27/2021] [Accepted: 05/05/2021] [Indexed: 05/02/2023]
Abstract
The induction of polyploidy is an efficient technique for creating a diversity of genetic, phenotypic, and phytochemical novelties in plant taxa. Sage (Salvia officinalis L.) is a well-known medicinal plant rich of valuable bioactive molecules such as triterpenic and phenolic acids. In the present study, the effect of in vitro and in vivo polyploidization on morphological characteristics, anatomical structures, phytochemical traits, and expression level of the genes involved in the biosynthesis of major triterpenic acids (ursolic, betulinic, and oleanolic acids) of the plant was studied. The sterile seeds treated with different concentrations (0, 0.05, 0.1, and 0.2%) of colchicine for 24 and 48 h were considered for polyploidy induction. Flow cytometry and chromosome counting were used to confirm the ploidy level of diploid (2n = 2x = 14, 2C DNA = 1.10 pg) and tetraploid (2n = 4x = 28, 2C DNA = 2.12 pg) plants after seven months. The highest polyploidy induction was obtained by applying 0.1% (w/v) colchicine for 48 h with an efficiency of 19.05% in vitro tetraploidy. Polyploids showed differences in leaf shape and color, leaf and stem thickness, trichrome density, root length, plant height, and number of leaves compared to diploid plants. There was also a significant decrease in rosmarinic acid content in polyploid (plants) as compared to diploid plants. Although a significant decrease in ursolic acid content was observed in polyploids, betulinic acid content associated with the expression levels of genes encoding enzymes being active in triterpene biosynthesis such as squalene epoxidase (SQE) and lupeol synthase (LUS). The expression of SQE and LUS was significantly increased in in vitro tertaploids (2.9-fold) and in vivo mixoploids (2.4-fold). The results confirm the idea that induced polyploidy can randomly alter breeding traits of plants as well as the content of bioactive compounds.
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Affiliation(s)
- Mansoureh Tavan
- Department of Horticultural Science, Faculty of Agriculture, Bu Ali Sina University, 65174, Hamedan, Iran.
| | - Hassan Sarikhani
- Department of Horticultural Science, Faculty of Agriculture, Bu Ali Sina University, 65174, Hamedan, Iran.
| | - Mohammad Hossein Mirjalili
- Department of Agriculture, Medicinal Plants and Drugs Research Institute, Shahid Beheshti University, 1983969411, Tehran, Iran.
| | - Maria Manuela Rigano
- Department of Agricultural Sciences, University of Naples Federico II, Portici, 80055, Naples, Italy.
| | - Ali Azizi
- Department of Horticultural Science, Faculty of Agriculture, Bu Ali Sina University, 65174, Hamedan, Iran.
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18
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Likhanov A, Oliinyk M, Pashkevych N, Churilov A, Kozyr M. The Role of Flavonoids in Invasion Strategy of Solidago canadensis L. PLANTS 2021; 10:plants10081748. [PMID: 34451793 PMCID: PMC8401302 DOI: 10.3390/plants10081748] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 08/15/2021] [Accepted: 08/19/2021] [Indexed: 12/05/2022]
Abstract
This study provides data on the problem of potential complexation of phenolic compounds synthesized by the plants Solidago canadensis L. and Solidago gigantea Ait. with ammonium forms of nitrogen, partly immobilized in the soil. A comparative analysis of secondary metabolites of the studied plants was performed by HPLC. The leaves of invasively active Solidago canadensis contain nine times more rutin than the plants of Solidago gigantea. Adding to the leaf extracts (v/v1/20) aqueous ammonia solution to pH 8.0 on the chromatograms decreases the intensity or completely causes peaks of flavonoids to disappear; instead, there are peaks of new polar substances (tR 1.5 and 2.0 min). The selective effect of the phenol-ammonium complex on various plant species was revealed. At a concentration of 20 μg/mL, these substances stimulated the formation of lateral roots in soybean seedlings and chrysanthemum cuttings. The suppression of root growth in radish seedlings occurred at a concentration of flavonoids in the extract of 25 μg/mL. In addition, a positive chemotaxis of the Pseudomonas putida (PGPR) was detected in the nitrogen-containing complex based on rutin (5 μg/mL). The identified feature allows PGPR colonization of the root system of Solidago canadensis with corresponding changes in the structure of the microbial community. The ability of the obtained nitrogen-containing polar complexes to regulate the growth processes of plants at extremely low concentration points to promising research in this direction.
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Affiliation(s)
- Artur Likhanov
- Institute for Evolutionary Ecology NAS Ukraine, Akademika Lebedeva 37, 03143 Kyiv, Ukraine; (M.O.); (M.K.)
- Department of Botany, Dendrology and Forest Tree Breeding, The National University of Life and Environmental Sciences of Ukraine, Henerala Rodimtseva 19, 03041 Kyiv, Ukraine;
- Correspondence: ; Tel.: +38-063-619-19-71
| | - Marian Oliinyk
- Institute for Evolutionary Ecology NAS Ukraine, Akademika Lebedeva 37, 03143 Kyiv, Ukraine; (M.O.); (M.K.)
| | - Nataliia Pashkevych
- M.G. Kholodny Institute of Botany of the NAS of Ukraine, Tereshchenkivska 2, 01601 Kyiv, Ukraine;
| | - Andrii Churilov
- Department of Botany, Dendrology and Forest Tree Breeding, The National University of Life and Environmental Sciences of Ukraine, Henerala Rodimtseva 19, 03041 Kyiv, Ukraine;
| | - Mykola Kozyr
- Institute for Evolutionary Ecology NAS Ukraine, Akademika Lebedeva 37, 03143 Kyiv, Ukraine; (M.O.); (M.K.)
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19
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Richardson BA, Germino MJ, Warwell MV, Buerki S. The role of genome duplication in big sagebrush growth and fecundity. AMERICAN JOURNAL OF BOTANY 2021; 108:1405-1416. [PMID: 34460105 DOI: 10.1002/ajb2.1714] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2020] [Accepted: 03/05/2021] [Indexed: 06/13/2023]
Abstract
PREMISE Adaptive traits can be dramatically altered by genome duplication. The study of interactions among traits, ploidy, and the environment are necessary to develop an understanding of how polyploidy affects niche differentiation and to develop restoration strategies for resilient native ecosystems. METHODS Growth and fecundity were measured in common gardens for 39 populations of big sagebrush (Artemisia tridentata) containing two subspecies and two ploidy levels. General linear mixed-effect models assessed how much of the trait variation could be attributed to genetics (i.e., ploidy and climatic adaptation), environment, and gene-environment interactions. RESULTS Growth and fecundity variation were explained well by the mixed models (80% and 91%, respectively). Much of the trait variation was attributed to environment, and 15% of variation in growth and 34% of variation in seed yield were attributed to genetics. Genetic trait variation was mostly attributable to ploidy, with much higher growth and seed production in diploids, even in a warm-dry environment typically dominated by tetraploids. Population-level genetic variation was also evident and was related to the climate of each population's origin. CONCLUSIONS Ploidy is a strong predictor growth and seed yield, regardless of common-garden environment. The superior growth and fecundity of diploids across environments raises the question as to how tetraploids can be more prevalent than diploids, especially in warm-dry environments. Two hypotheses that may explain the abundance of tetraploids on the landscape include selection for drought resistance at the seedling stage, and greater competitive ability in water uptake in the upper soil horizon.
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Affiliation(s)
| | - Matthew J Germino
- U.S. Geological Survey, Forest and Rangeland Ecosystem Service Center, Boise, ID, USA
| | | | - Sven Buerki
- Department of Biological Sciences, Boise State University, Boise, ID, USA
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20
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Jeelani SM, Singh J, Sharma A, Rather GA, Ali SA, Gupta AP, Singh S, Lattoo SK. In-vitro cytotoxicity in relation to chemotypic diversity in diploid and tetraploid populations of Gentiana kurroo Royle. JOURNAL OF ETHNOPHARMACOLOGY 2021; 274:113966. [PMID: 33647427 DOI: 10.1016/j.jep.2021.113966] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Revised: 11/27/2020] [Accepted: 02/22/2021] [Indexed: 06/12/2023]
Abstract
ETHNOPHARMACOLOGICAL RELEVANCE Gentiana kurroo is a multipurpose critically endangered medicinal herb prescribed as medicine in Ayurveda in India and exhibits various pharmacological properties including anti-cancer activity. The species is rich repository of pharmacologically active secondary metabolites together with secoiridoidal glycosides. AIM OF THE STUDY The study aimed to investigate the chemical diversity in different populations/cytotypes prevailing in G. kurroo to identify elite genetic stocks in terms of optimum accumulation/biosynthesis of desired metabolites and having higher in-vitro cytotoxicity potential in relation to chemotypic diversity. MATERIAL AND METHODS The wild plants of the species were collected from different ranges of altitudes from the Kashmir Himalayas. For cytological evaluation, the standard meiotic analysis was performed. The standard LC-MS/MS technique was employed for phytochemical analysis based on different marker compounds viz. sweroside, swertiamarin, and gentiopicroside. Different tissues such as root-stock, aerial parts, and flowers were used for chemo-profiling. Further, the methanolic extracts of diploid and tetraploid cytotypes were assessed for cytotoxic activity by using MTT assay against four different human cancer cell lines. RESULTS The quantification of major bioactive compounds based on tissue- and location-specific comparison, as well as in-vitro cytotoxic potential among extant cytotypes, was evaluated. The comprehensive cytomorphological studies of the populations from NW Himalayas revealed the occurrence of different chromosomal races viz. n = 13, 26. The tetraploid cytotype was hitherto unreported. The tissue-specific chemo-profiling revealed relative dominance of different phytoconstituents in root-stock. There was a noticeable increase in the quantity of the analyzed compounds in relation to increasing ploidy status along the increasing altitudes. The MTT assay of methanolic extracts of diploid and tetraploid cytotypes displayed significant cytotoxicity potential in tetraploids. The root-stock extracts of tetraploids were highly active extracts with IC50 value ranges from 5.65 to 8.53 μg/mL against HCT-116 colon cancer. CONCLUSION The chemical evaluation of major bioactive compounds in diverse cytotypes from different plant parts along different altitudes presented an appreciable variability in sweroside, swertiamarin, and gentiopicroside contents. Additionally, the concentrations of these phytoconstituents varied for cytotoxicity potential among different screened cytotypes. This quantitative difference of active bio-constituents was in correspondence with the growth inhibition percentage of different tested cancer cell lines. Thus, the present investigation strongly alludes towards a prognostic approach for the identification of elite cytotypes/chemotypes with significant pharmacological potential.
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Affiliation(s)
- Syed Mudassir Jeelani
- Plant Biotechnology Division, CSIR- Indian Institute of Integrative Medicine, Canal Road, Jammu, 180001, India.
| | - Jasvinder Singh
- Cancer Pharmacology Division, CSIR-Indian Institute of Integrative Medicine, Jammu, 180001, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-Indian Institute of Integrative Medicine, Jammu, 180001, India
| | - Arti Sharma
- Plant Biotechnology Division, CSIR- Indian Institute of Integrative Medicine, Canal Road, Jammu, 180001, India
| | - Gulzar A Rather
- Plant Biotechnology Division, CSIR- Indian Institute of Integrative Medicine, Canal Road, Jammu, 180001, India
| | - Sheikh Abid Ali
- Division of Biotechnology, CSIR- Indian Institute of Integrative Medicine, Branch Laboratory, Sanat Nagar, Srinagar, 190005, India
| | - Ajai Prakash Gupta
- Quality Control and Quality Assurance Division, CSIR- Indian Institute of Integrative Medicine, Canal Road, Jammu, 180001, India
| | - Shashank Singh
- Cancer Pharmacology Division, CSIR-Indian Institute of Integrative Medicine, Jammu, 180001, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-Indian Institute of Integrative Medicine, Jammu, 180001, India
| | - Surrinder K Lattoo
- Plant Biotechnology Division, CSIR- Indian Institute of Integrative Medicine, Canal Road, Jammu, 180001, India.
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21
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Shaikh N, Verma RC, Khah MA, Filimban FZ, Albaz AA, Alam Q. Morphological and Chromosomal Characterization of Diploid and Colchicine Induced Autotetraploid Plants of Commelina benghalensis L. (Commelinaceae). CYTOLOGIA 2021. [DOI: 10.1508/cytologia.86.167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
| | | | | | - Faten Zubair Filimban
- Division of Botany, Department of Biology, College of Sciences, King Abdulaziz University
| | | | - Qamre Alam
- Department of Botany, Shri JJT University
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22
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Yang X, Cheng J, Yao B, Lu H, Zhang Y, Xu J, Song X, Sowndhararajan K, Qiang S. Polyploidy‐promoted phenolic metabolism confers the increased competitive ability of
Solidago canadensis. OIKOS 2021. [DOI: 10.1111/oik.08280] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Xianghong Yang
- Weed Research Laboratory, College of Life Sciences, Nanjing Agricultural Univ. Nanjing China
| | - Jiliang Cheng
- Weed Research Laboratory, College of Life Sciences, Nanjing Agricultural Univ. Nanjing China
| | - Beibei Yao
- Weed Research Laboratory, College of Life Sciences, Nanjing Agricultural Univ. Nanjing China
| | - Huan Lu
- Weed Research Laboratory, College of Life Sciences, Nanjing Agricultural Univ. Nanjing China
| | - Yu Zhang
- Weed Research Laboratory, College of Life Sciences, Nanjing Agricultural Univ. Nanjing China
| | - Jingxuan Xu
- Weed Research Laboratory, College of Life Sciences, Nanjing Agricultural Univ. Nanjing China
| | - Xiaoling Song
- Weed Research Laboratory, College of Life Sciences, Nanjing Agricultural Univ. Nanjing China
| | | | - Sheng Qiang
- Weed Research Laboratory, College of Life Sciences, Nanjing Agricultural Univ. Nanjing China
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Esposito S, Aversano R, Tripodi P, Carputo D. Whole-Genome Doubling Affects Pre-miRNA Expression in Plants. PLANTS 2021; 10:plants10051004. [PMID: 34069771 PMCID: PMC8157229 DOI: 10.3390/plants10051004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Revised: 04/09/2021] [Accepted: 05/10/2021] [Indexed: 11/16/2022]
Abstract
Whole-genome doubling (polyploidy) is common in angiosperms. Several studies have indicated that it is often associated with molecular, physiological, and phenotypic changes. Mounting evidence has pointed out that micro-RNAs (miRNAs) may have an important role in whole-genome doubling. However, an integrative approach that compares miRNA expression in polyploids is still lacking. Here, a re-analysis of already published RNAseq datasets was performed to identify microRNAs’ precursors (pre-miRNAs) in diploids (2x) and tetraploids (4x) of five species (Arabidopsis thaliana L., Morus alba L., Brassica rapa L., Isatis indigotica Fort., and Solanum commersonii Dun). We found 3568 pre-miRNAs, three of which (pre-miR414, pre-miR5538, and pre-miR5141) were abundant in all 2x, and were absent/low in their 4x counterparts. They are predicted to target more than one mRNA transcript, many belonging to transcription factors (TFs), DNA repair mechanisms, and related to stress. Sixteen pre-miRNAs were found in common in all 2x and 4x. Among them, pre-miRNA482, pre-miRNA2916, and pre-miRNA167 changed their expression after polyploidization, being induced or repressed in 4x plants. Based on our results, a common ploidy-dependent response was triggered in all species under investigation, which involves DNA repair, ATP-synthesis, terpenoid biosynthesis, and several stress-responsive transcripts. In addition, an ad hoc pre-miRNA expression analysis carried out solely on 2x vs. 4x samples of S. commersonii indicated that ploidy-dependent pre-miRNAs seem to actively regulate the nucleotide metabolism, probably to cope with the increased requirement for DNA building blocks caused by the augmented DNA content. Overall, the results outline the critical role of microRNA-mediated responses following autopolyploidization in plants.
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Affiliation(s)
- Salvatore Esposito
- CREA Research Centre for Cereal and Industrial Crops, 71122 Foggia, Italy;
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy;
| | - Riccardo Aversano
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy;
| | - Pasquale Tripodi
- CREA Research Centre for Vegetable and Ornamental Crops, 84098 Pontecagnano, Italy;
| | - Domenico Carputo
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy;
- Correspondence: ; Tel.: +39-08-1252-9225
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Garcia-Lozano M, Natarajan P, Levi A, Katam R, Lopez-Ortiz C, Nimmakayala P, Reddy UK. Altered chromatin conformation and transcriptional regulation in watermelon following genome doubling. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 106:588-600. [PMID: 33788333 DOI: 10.1111/tpj.15256] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2020] [Accepted: 03/26/2021] [Indexed: 06/12/2023]
Abstract
Polyploidy has played a crucial role in plant evolution, development and function. Synthetic autopolyploid represents an ideal system to investigate the effects of polyploidization on transcriptional regulation. In this study, we deciphered the impact of genome duplication at phenotypic and molecular levels in watermelon. Overall, 88% of the genes in tetraploid watermelon followed a >1:1 dosage effect, and accordingly, differentially expressed genes were largely upregulated. In addition, a great number of hypomethylated regions (1688) were identified in an isogenic tetraploid watermelon. These differentially methylated regions were localized in promoters and intergenic regions and near transcriptional start sites of the identified upregulated genes, which enhances the importance of methylation in gene regulation. These changes were reflected in sophisticated higher-order chromatin structures. The genome doubling caused switching of 108 A and 626 B compartments that harbored genes associated with growth, development and stress responses.
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Affiliation(s)
- Marleny Garcia-Lozano
- Department of Biology, Gus R. Douglass Institute, West Virginia State University Institute, Charleston, WV, USA
| | - Purushothaman Natarajan
- Department of Biology, Gus R. Douglass Institute, West Virginia State University Institute, Charleston, WV, USA
| | - Amnon Levi
- USDA, ARS, U.S. Vegetable Lab, Charleston, SC, USA
| | - Ramesh Katam
- Department of Biological Sciences, Florida A&M University, Tallahassee, FL, USA
| | - Carlos Lopez-Ortiz
- Department of Biology, Gus R. Douglass Institute, West Virginia State University Institute, Charleston, WV, USA
| | - Padma Nimmakayala
- Department of Biology, Gus R. Douglass Institute, West Virginia State University Institute, Charleston, WV, USA
| | - Umesh K Reddy
- Department of Biology, Gus R. Douglass Institute, West Virginia State University Institute, Charleston, WV, USA
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25
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Wipf HML, Coleman-Derr D. Evaluating domestication and ploidy effects on the assembly of the wheat bacterial microbiome. PLoS One 2021; 16:e0248030. [PMID: 33735198 PMCID: PMC7971525 DOI: 10.1371/journal.pone.0248030] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Accepted: 02/17/2021] [Indexed: 02/01/2023] Open
Abstract
While numerous studies implicate the microbiome in host fitness, contributions of host evolution to microbial recruitment remain largely uncharacterized. Past work has shown that plant polyploidy and domestication can influence plant biotic and abiotic interactions, yet impacts on broader microbiome assembly are still unknown for many crop species. In this study, we utilized three approaches-two field studies and one greenhouse-based experiment-to determine the degree to which patterns in bacterial community assembly in wheat (Triticum sp.) roots and rhizospheres are attributable to the host factors of ploidy level (2n, 4n, 6n) and domestication status (cultivated vs. wild). Profiling belowground bacterial communities with 16S rRNA gene amplicon sequencing, we analyzed patterns in diversity and composition. From our initial analyses of a subsetted dataset, we observed that host ploidy level was statistically significant in explaining variation in alpha and beta diversity for rhizosphere microbiomes, as well as correlated with distinct phylum-level shifts in composition, in the field. Using a reduced complexity field soil inoculum and controlled greenhouse conditions, we found some evidence suggesting that genomic lineage and ploidy level influence root alpha and beta diversity (p-value<0.05). However, in a follow-up field experiment using an expanded set of Triticum genomes that included both wild and domesticated varieties, we did not find a strong signal for either diploid genome lineages, domestication status, or ploidy level in shaping rhizosphere bacterial communities. Taken together, these results suggest that while host ploidy and domestication may have some minor influence on microbial assembly, these impacts are subtle and difficult to assess in belowground compartments for wheat varieties. By improving our understanding of the degree to which host ploidy and cultivation factors shape the plant microbiome, this research informs perspectives on what key driving forces may underlie microbiome structuring, as well as where future efforts may be best directed towards fortifying plant growth by microbial means. The greatest influence of the host on the wheat microbiome appeared to occur in the rhizosphere compartment, and we suggest that future work focuses on this environment to further characterize how host genomic and phenotypic changes influence plant-microbe communications.
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Affiliation(s)
- Heidi M. L. Wipf
- Department of Plant and Microbial Biology, University of California, Berkeley, California, United States of America
| | - Devin Coleman-Derr
- Department of Plant and Microbial Biology, University of California, Berkeley, California, United States of America
- Plant Gene Expression Center, USDA-ARS, Albany, California, United States of America
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Tantray YR, Wani MS, Pradhan SK, Hamid M, Jan I, Singhal VK, Gupta RC, Habeeb TH. Morphological, cytological and phytochemical studies in naturally occurring diploid and tetraploid populations of Physochlaina praealta from high altitudes of Trans-Himalaya. JPC-J PLANAR CHROMAT 2021. [DOI: 10.1007/s00764-020-00075-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Tohidi B, Rahimmalek M, Arzani A. Variation in Phytochemical, Morphological, and Ploidy Levels of Iranian Thymus Species. Chem Biodivers 2021; 18:e2000911. [PMID: 33438342 DOI: 10.1002/cbdv.202000911] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2020] [Accepted: 01/11/2021] [Indexed: 11/08/2022]
Abstract
Thymus is one of the most important genera of the Lamiaceae family. This work was performed to assess inter and intra species variation, which is an indispensable prerequisite for the selection and the exploitation of the germplasm, using yield, secondary metabolites, and ploidy level criteria. Nineteen Iranian populations belonging to 11 Thymus species which includes T. vulgaris were used in this study. The results of cytological observations on the 19 populations revealed the three root-tip chromosome numbers of 2n=2x=30, 2n=4x=56 or 60 (diploid and tetraploid). This study also presents the results of a two-year field experiment that evaluates the agronomic and morphology of the 19 populations of Thymus spp. Cluster analysis grouped the populations into six groups and explained the relationships among ploidy levels, morphological traits, and essential oils (EOs). In general, diploid species belonged to the thymol chemotype, whilst carvacrol chemotype consistently dependent on the gene-dosage effect. Thymus migricus, T. daenensis-2, T. serpyllum, and T. trautvetteri populations with diverse thymol background were the best selection as the parents to improve thymol in a breeding program. Moreover, dry and fresh weight criteria can be used to improve EO content in thyme. Achieving this goal would be expected by crossing T. migricus and T. daenensis-2. Finally, providing relevant information on the ploidy level of Thymus species, with emphasis on morphology and EO components variations, may be recommended for the selection of populations or species to improve bioactive components as well as morphological traits in future breeding programs.
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Affiliation(s)
- Behnaz Tohidi
- Department of Agronomy and Plant Breeding, College of Agriculture, Isfahan University of Technology, Isfahan, 84156 83111, Iran
| | - Mehdi Rahimmalek
- Department of Agronomy and Plant Breeding, College of Agriculture, Isfahan University of Technology, Isfahan, 84156 83111, Iran.,Department of Horticulture, College of Agriculture, Isfahan University of Technology, Isfahan, 84156 83111, Iran
| | - Ahmad Arzani
- Department of Agronomy and Plant Breeding, College of Agriculture, Isfahan University of Technology, Isfahan, 84156 83111, Iran
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Gantait S, Mukherjee E. Induced autopolyploidy-a promising approach for enhanced biosynthesis of plant secondary metabolites: an insight. J Genet Eng Biotechnol 2021; 19:4. [PMID: 33417015 PMCID: PMC7794262 DOI: 10.1186/s43141-020-00109-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Accepted: 12/22/2020] [Indexed: 02/06/2023]
Abstract
Background Induced polyploidy serves as an efficient approach in extricating genetic potential of cells. During polyploidization, multiple sets of chromosomes are derived from the same organism resulting in the development of an autopolyploid. Alterations owing to artificially induced polyploidy level significantly influence internal homeostatic condition of resultant cells. Main text Induced autopolyploidy transpires as a result of an increase in the size of genome without any change in elementary genetic material. Such autopolyploidy, artificially induced via application of antimitotic agents, brings about a lot of beneficial changes in plants, coupled with very few detrimental effects. Induced autopolyploids exhibit superior adaptability, endurance to biotic and abiotic stresses, longer reproductive period and enzyme diversity coupled with enhanced rate of photosynthesis and gene action in comparison to their diploid counterparts. However, reduced rate of transpiration and growth, delay in flowering are some of the demerits of autopolyploids. Inspite of these slight unfavourable outcomes, induced autopolyploidization has been utilized in an array of instances wherein genetic improvement of plant species is concerned, since this technique usually boosts the biomass of concerned economic parts of a plant. In other way, it is also evident that multiplication of genome bestows enhanced production of secondary metabolites, which has contributed to a significant commercial value addition especially for plants with medicinal importance, in particular. Conclusion This review makes an attempt to explore the system and success of antimitotic agents vis-à-vis artificial autopolyploidization, interfered with the biosynthesis-cum-production of secondary metabolites having cutting-edge pharmaceutical importance.
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Affiliation(s)
- Saikat Gantait
- Crop Research Unit (Genetics and Plant Breeding), Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, West Bengal, 741252, India.
| | - Eashan Mukherjee
- Crop Research Unit (Genetics and Plant Breeding), Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, West Bengal, 741252, India
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29
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Podwyszyńska M, Markiewicz M, Broniarek-Niemiec A, Matysiak B, Marasek-Ciolakowska A. Apple Autotetraploids with Enhanced Resistance to Apple Scab ( Venturia inaequalis) Due to Genome Duplication-Phenotypic and Genetic Evaluation. Int J Mol Sci 2021; 22:E527. [PMID: 33430246 PMCID: PMC7825683 DOI: 10.3390/ijms22020527] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Revised: 01/04/2021] [Accepted: 01/05/2021] [Indexed: 11/16/2022] Open
Abstract
Among the fungal diseases of apple trees, serious yield losses are due to an apple scab caused by Venturia inaequalis. Protection against this disease is based mainly on chemical treatments, which are currently very limited. Therefore, it is extremely important to introduce cultivars with reduced susceptibility to this pathogen. One of the important sources of variability for breeding is the process of polyploidization. Newly obtained polyploids may acquire new features, including increased resistance to diseases. In our earlier studies, numerous tetraploids have been obtained for several apple cultivars with 'Free Redstar' tetraploids manifesting enhanced resistance to apple scab. In the present study, tetraploids of 'Free Redstar' were assessed in terms of phenotype and genotype with particular emphasis on the genetic background of their increased resistance to apple scab. Compared to diploid plants, tetraploids (own-rooted plants) were characterized with poor growth, especially during first growing season. They had considerably shorter shoots, fewer branches, smaller stem diameter, and reshaped leaves. In contrast to own-rooted plants, in M9-grafted three-year old trees, no significant differences between diplo- and tetraploids were observed, either in morphological or physiological parameters, with the exceptions of the increased leaf thickness and chlorophyll content recorded in tetraploids. Significant differences between sibling tetraploid clones were recorded, particularly in leaf shape and some physiological parameters. The amplified fragment length polymorphism (AFLP) analysis confirmed genetic polymorphism of tetraploid clones. Methylation-sensitive amplification polymorphism (MSAP) analysis showed that the level of DNA methylation was twice as high in young tetraploid plants as in a diploid donor tree, which may explain the weaker vigour of neotetraploids in the early period of their growth in the juvenile phase. Molecular analysis showed that 'Free Redstar' cultivar and their tetraploids bear six Rvi genes (Rvi5, Rvi6, Rvi8, Rvi11, Rvi14 and Rvi17). Transcriptome analysis confirmed enhanced resistance to apple scab of 'Free Redstar' tetraploids since the expression levels of genes related to resistance were strongly enhanced in tetraploids compared to their diploid counterparts.
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Affiliation(s)
- Małgorzata Podwyszyńska
- Department of Applied Biology, Research Institute of Horticulture, Konstytucji 3 Maja 1/3 Street, 96-100 Skierniewice, Poland; (M.M.); (B.M.); (A.M.-C.)
| | - Monika Markiewicz
- Department of Applied Biology, Research Institute of Horticulture, Konstytucji 3 Maja 1/3 Street, 96-100 Skierniewice, Poland; (M.M.); (B.M.); (A.M.-C.)
| | - Agata Broniarek-Niemiec
- Department of Phytopathology, Research Institute of Horticulture, Konstytucji 3 Maja 1/3 Street, 96-100 Skierniewice, Poland;
| | - Bożena Matysiak
- Department of Applied Biology, Research Institute of Horticulture, Konstytucji 3 Maja 1/3 Street, 96-100 Skierniewice, Poland; (M.M.); (B.M.); (A.M.-C.)
| | - Agnieszka Marasek-Ciolakowska
- Department of Applied Biology, Research Institute of Horticulture, Konstytucji 3 Maja 1/3 Street, 96-100 Skierniewice, Poland; (M.M.); (B.M.); (A.M.-C.)
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30
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Thakur RK, Rajpal VR, Raina SN, Kumar P, Sonkar A, Joshi L. UPLC-DAD Assisted Phytochemical Quantitation Reveals a Sex, Ploidy and Ecogeography Specificity in the Expression Levels of Selected Secondary Metabolites in Medicinal Tinospora cordifolia: Implications for Elites' Identification Program. Curr Top Med Chem 2020; 20:698-709. [PMID: 31976836 DOI: 10.2174/1568026620666200124105027] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Revised: 10/10/2019] [Accepted: 10/25/2019] [Indexed: 11/22/2022]
Abstract
BACKGROUND Medicinal phytochemistry involving UPLC-DAD in an exhaustive analysis involving quantification of eight commercially important phytochemicals viz. syringin, cordifolioside A, magnoflorine, tinocordiside, palmatine, 20β-hydroxyecdysone, L-tetrahydropalmatine and berberine has been done in 143 accessions from eight states and the union territories of Delhi and Jammu & Kashmir of India representing three different ploidy levels viz. diploid (2x), triploid (3x) and synthetic tetraploid (4x). The study was done to assess the effect of sex, ploidy level and ecogeography on the expression level of secondary metabolites in stems of dioecious, medicinally important shrub Tinospora cordifolia. METHODS Two different UPLC-DAD methods were used for the quantification of eight selected phytochemicals from the alcoholic stem extracts of T. cordifolia accessions. The Waters Acquity UPLC system hyphenated to the QTOF micromass system, equipped with PDA and ESI-Q-TOF detectors was utilized for the quantitative analysis, Mass Lynx v 4.0 software was used for data analysis. RESULTS Significant quantitative changes were observed in the analysed secondary metabolites among different accessions of T. cordifolia. The triploid (3x) cytotypes revealed higher amounts of seven out of eight analysed secondary metabolites than diploids and only 20β-hydroxyecdysone was observed to be present in significantly higher amount in diploid cytotypes. Further, at the tetraploid level, novel induced colchiploid (synthetic 4x) genotypes revealed increase in the yield of all of the analysed eight phytochemicals than their respective diploid counterparts. The quantity of active principles in tetraploid cytotypes were also higher than the average triploid levels at multiple locations in five out of eight tested phytochemicals, indicating the influence of ploidy on expression levels of secondary metabolites in T. cordifolia. Additionally, at each of the three ploidy levels (2x, 3x and synthetic 4x), a significant sex specificity could be observed in the expression levels of active principles, with female sex outperforming the male in the content of some phytochemicals, while others getting overexpressed in the male sex. The manifestation of diverse ecogeographies on secondary metabolism was observed in the form of identification of high yielding accessions from the states of Madhya Pradesh, Delhi and Himachal Pradesh and the Union territory of Jammu & Kashmir. Two triploid female accessions that contained approximately two- to eight fold higher amounts of five out of the eight analysed phytochemicals have been identified as superior elites from the wild from the states of Delhi and Madhya Pradesh. CONCLUSION The paper shows the first observations of ploidy specificity along with subtle sex and ecogeography influence on the expression levels of secondary metabolome in T. cordifolia.
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Affiliation(s)
- Rakesh Kr Thakur
- Amity institute of Biotechnology, Amity University, Noida, Uttar Pradesh, India
| | - Vijay Rani Rajpal
- Botany Department, Hansraj College, University of Delhi, New Delhi, India
| | - S N Raina
- Amity institute of Biotechnology, Amity University, Noida, Uttar Pradesh, India
| | - Pawan Kumar
- CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, India
| | - Anand Sonkar
- Botany Department, Hansraj College, University of Delhi, New Delhi, India
| | - Lata Joshi
- Amity institute of Biotechnology, Amity University, Noida, Uttar Pradesh, India
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Scarrow M, Wang Y, Sun G. Molecular regulatory mechanisms underlying the adaptability of polyploid plants. Biol Rev Camb Philos Soc 2020; 96:394-407. [PMID: 33098261 DOI: 10.1111/brv.12661] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 10/13/2020] [Accepted: 10/15/2020] [Indexed: 12/11/2022]
Abstract
Polyploidization influences the genetic composition and gene expression of an organism. This multi-level genetic change allows the formation of new regulatory pathways leading to increased adaptability. Although both forms of polyploidization provide advantages, autopolyploids were long thought to have little impact on plant divergence compared to allopolyploids due to their formation through genome duplication only, rather than in combination with hybridization. Recent advances have begun to clarify the molecular regulatory mechanisms such as microRNAs, alternative splicing, RNA-binding proteins, histone modifications, chromatin remodelling, DNA methylation, and N6 -methyladenosine (m6A) RNA methylation underlying the evolutionary success of polyploids. Such research is expanding our understanding of the evolutionary adaptability of polyploids and the regulatory pathways that allow adaptive plasticity in a variety of plant species. Herein we review the roles of individual molecular regulatory mechanisms and their potential synergistic pathways underlying plant evolution and adaptation. Notably, increasing interest in m6A methylation has provided a new component in potential mechanistic coordination that is still predominantly unexplored. Future research should attempt to identify and functionally characterize the evolutionary impact of both individual and synergistic pathways in polyploid plant species.
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Affiliation(s)
- Margaret Scarrow
- Department of Biology, Saint Mary's University, Halifax, Nova Scotia, B3H 3C3, Canada
| | - Yiling Wang
- College of Life Science, Shanxi Normal University, Linfen, Shanxi, 041000, China
| | - Genlou Sun
- Department of Biology, Saint Mary's University, Halifax, Nova Scotia, B3H 3C3, Canada
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Gaynor ML, Lim-Hing S, Mason CM. Impact of genome duplication on secondary metabolite composition in non-cultivated species: a systematic meta-analysis. ANNALS OF BOTANY 2020; 126:363-376. [PMID: 32504537 PMCID: PMC7424755 DOI: 10.1093/aob/mcaa107] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Accepted: 06/02/2020] [Indexed: 05/05/2023]
Abstract
BACKGROUND AND AIMS Whole-genome duplication is known to influence ecological interactions and plant physiology; however, despite abundant case studies, much is still unknown about the typical impact of genome duplication on plant secondary metabolites (PSMs). In this study, we assessed the impact of polyploidy events on PSM characteristics in non-cultivated plants. METHODS We conducted a systematic review and meta-analysis to compare composition and concentration of PSMs among closely related plant species or species complexes differing in ploidy level. KEY RESULTS We assessed 53 studies that focus on PSMs among multiple cytotypes, of which only 14 studies compared concentration quantitatively among cytotypes. We found that whole-genome duplication can have a significant effect on PSM concentration; however, these effects are highly inconsistent. CONCLUSION Overall, there was no consistent effect of whole-genome duplication on PSM concentrations or profiles.
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Affiliation(s)
- Michelle L Gaynor
- Department of Biology, University of Central Florida, Orlando, FL, USA
- Florida Museum of Natural History, University of Florida, Gainesville, FL, USA
- Department of Biology, University of Florida, Gainesville, FL, USA
| | - Simone Lim-Hing
- Department of Biology, University of Central Florida, Orlando, FL, USA
- Department of Plant Biology, University of Georgia, Athens, GA, USA
| | - Chase M Mason
- Department of Biology, University of Central Florida, Orlando, FL, USA
- For correspondence. E-mail
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Thakur RK, Rajpal VR, Rao SR, Singh A, Joshi L, Kaushal P, Raina SN. Induction and evaluation of colchitetraploids of two species of Tinospora Miers, 1851. COMPARATIVE CYTOGENETICS 2020; 14:211-229. [PMID: 32509238 PMCID: PMC7253504 DOI: 10.3897/compcytogen.v14i2.33394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/26/2019] [Accepted: 02/11/2020] [Indexed: 06/11/2023]
Abstract
Autotetraploidy, both natural and/or induced, has potential for genetic improvement of various crop species including that of medicinal importance. Tinospora cordifolia (Willdenow, 1806) Miers, 1851 ex Hooker et Thomson, 1855 and T. sinensis (Loureiro, 1790) Merrill, 1934 are two diploid species, which are dioecious, deciduous and climbing shrubs with high medicinal importance. Among the three methods used for induction of polyploidy by colchicine treatment, it was cotton swab method which successfully induced the polyploidy in both species. The morphological and cytogenetical features of the synthetic tetraploids were compared with their diploid counterparts. The tetraploids were morphologically distinct from diploid plants. They exhibited larger organs, such as stem, leaves, inflorescence, fruits, flowers and seeds. The tetraploids were characterized by the presence of low quadrivalent frequency and high bivalent average. Unequal distribution of chromosomes at anaphase I was found in 60% cells. The present study provides important information on the superiority of autotetraploids as compared to diploid counterparts in both species.
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Affiliation(s)
- Rakesh Kr. Thakur
- Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, 201313, IndiaAmity UniversityNoidaIndia
| | - Vijay Rani Rajpal
- Department of Botany, Hansraj College, University of Delhi, Delhi, 110007, IndiaUniversity of DelhiDelhiIndia
| | - Satyawada Rama Rao
- Department of Biotechnology & Bioinformatics, North Eastern Hill University, Shillong, Meghalaya, 793022, IndiaNorth Eastern Hill UniversityShillongIndia
| | - Apekshita Singh
- Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, 201313, IndiaAmity UniversityNoidaIndia
| | - Lata Joshi
- Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, 201313, IndiaAmity UniversityNoidaIndia
| | - Pankaj Kaushal
- ICAR- Indian Grassland and Fodder Research Institute, Jhansi, Uttar Pradesh, 284003, IndiaICAR- Indian Grassland and Fodder Research InstituteJhansiIndia
| | - Soom Nath Raina
- Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, 201313, IndiaAmity UniversityNoidaIndia
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Syngelaki E, Schinkel CCF, Klatt S, Hörandl E. Effects of Temperature Treatments on Cytosine-Methylation Profiles of Diploid and Autotetraploid Plants of the Alpine Species Ranunculus kuepferi (Ranunculaceae). FRONTIERS IN PLANT SCIENCE 2020; 11:435. [PMID: 32322263 PMCID: PMC7158262 DOI: 10.3389/fpls.2020.00435] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Accepted: 03/25/2020] [Indexed: 05/23/2023]
Abstract
The exposure to environmental stress can trigger epigenetic variation, which may have several evolutionary consequences. Polyploidy seems to affect the DNA methylation profiles. Nevertheless, it abides unclear whether temperature stress can induce methylations changes in different cytotypes and to what extent a treatment shift is translated to an epigenetic response. A suitable model system for studying these questions is Ranunculus kuepferi, an alpine perennial herb. Diploid and autotetraploid individuals of R. kuepferi were exposed to cold (+7°C day/+2°C night; frost treatment -1°C cold shocks for 3 nights per week) and warm (+15° day/+10°C night) conditions in climate growth chambers for two consecutive flowering periods and shifted from one condition to the other after the first flowering period. Methylation-sensitive amplified fragment-length polymorphism markers were applied for both years, to track down possible alterations induced by the stress treatments. Patterns of methylation suggested that cytotypes differed significantly in their profiles, independent from year of treatment. Likewise, the treatment shift had an impact on both cytotypes, resulting in significantly less epiloci, regardless the shift's direction. The AMOVAs revealed higher variation within than among treatments in diploids. In tetraploids, internally-methylated loci had a higher variation among than within treatments, as a response to temperature's change in both directions, and support the hypothesis of temperature stress affecting the epigenetic variation. Results suggest that the temperature-sensitivity of DNA methylation patterns shows a highly dynamic phenotypic plasticity in R. kuepferi, as both cytotypes responded to temperature shifts. Furthermore, ploidy level, even without effects of hybridization, has an important effect on epigenetic background variation, which may be correlated with the DNA methylation dynamics during cold acclimation.
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Affiliation(s)
- Eleni Syngelaki
- Department of Systematics, Biodiversity and Evolution of Plants (with Herbarium), Albrecht-von-Haller-Institute for Plant Sciences, Georg-August-Universität Göttingen, Göttingen, Germany
| | - Christoph C. F. Schinkel
- Department of Systematics, Biodiversity and Evolution of Plants (with Herbarium), Albrecht-von-Haller-Institute for Plant Sciences, Georg-August-Universität Göttingen, Göttingen, Germany
| | - Simone Klatt
- Section Safety and Environmental Protection, Georg-August-Universität Göttingen, Göttingen, Germany
| | - Elvira Hörandl
- Department of Systematics, Biodiversity and Evolution of Plants (with Herbarium), Albrecht-von-Haller-Institute for Plant Sciences, Georg-August-Universität Göttingen, Göttingen, Germany
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Rastogi S, Shah S, Kumar R, Kumar A, Shasany AK. Comparative temporal metabolomics studies to investigate interspecies variation in three Ocimum species. Sci Rep 2020; 10:5234. [PMID: 32251340 PMCID: PMC7089951 DOI: 10.1038/s41598-020-61957-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Accepted: 02/20/2020] [Indexed: 11/08/2022] Open
Abstract
Ocimum is one of the most revered medicinally useful plants which have various species. Each of the species is distinct in terms of metabolite composition as well as the medicinal property. Some basil types are used more often as an aromatic and flavoring ingredient. It would be informative to know relatedness among the species which though belong to the same genera while exclusively different in terms of metabolic composition and the operating pathways. In the present investigation the similar effort has been made in order to differentiate three commonly occurring Ocimum species having the high medicinal value, these are Ocimum sanctum, O. gratissimum and O. kilimandscharicum. The parameters for the comparative analysis of these three Ocimum species comprised of temporal changes in number leaf trichomes, essential oil composition, phenylpropanoid pathway genes expression and the activity of important enzymes. O. gratissimum was found to be richest in phenylpropanoid accumulation as well as their gene expression when compared to O. sanctum while O. kilimandscharicum was found to be accumulating terpenoid. In order to get an overview of this qualitative and quantitative regulation of terpenes and phenylpropenes, the expression pattern of some important transcription factors involved in secondary metabolism were also studied.
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Affiliation(s)
- Shubhra Rastogi
- Centre for Biotechnology, Shiksha 'O' Anusandhan University, Bhubaneswar, 751003, Odisha, India
| | - Saumya Shah
- Biotechnology Division, CSIR- Central Institute of Medicinal and Aromatic Plants, PO CIMAP, Lucknow, 226015, UP, India
| | - Ritesh Kumar
- Biotechnology Division, CSIR- Central Institute of Medicinal and Aromatic Plants, PO CIMAP, Lucknow, 226015, UP, India
| | - Ajay Kumar
- Biotechnology Division, CSIR- Central Institute of Medicinal and Aromatic Plants, PO CIMAP, Lucknow, 226015, UP, India
| | - Ajit Kumar Shasany
- Biotechnology Division, CSIR- Central Institute of Medicinal and Aromatic Plants, PO CIMAP, Lucknow, 226015, UP, India.
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Wu M, Ge Y, Xu C, Wang J. Metabolome and Transcriptome Analysis of Hexaploid Solidago canadensis Roots Reveals its Invasive Capacity Related to Polyploidy. Genes (Basel) 2020; 11:genes11020187. [PMID: 32050732 PMCID: PMC7074301 DOI: 10.3390/genes11020187] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2020] [Revised: 02/08/2020] [Accepted: 02/08/2020] [Indexed: 12/29/2022] Open
Abstract
Polyploid plants are more often invasive species than their diploid counterparts. As the invasiveness of a species is often linked to its production of allelopathic compounds, we hypothesize that differences in invasive ability between cytotypes may be due to their different ability to synthesize allelopathic metabolites. We test this using two cytotypes of Solidago canadensis as the model and use integrated metabolome and transcriptome data to resolve the question. Metabolome analysis identified 122 metabolites about flavonoids, phenylpropanoids and terpenoids, of which 57 were differentially accumulated between the two cytotypes. Transcriptome analysis showed that many differentially expressed genes (DEGs) were enriched in ‘biosynthesis of secondary metabolites’, ‘plant hormone signal transduction’, and ‘MAPK signaling’, covering most steps of plant allelopathic metabolite synthesis. Importantly, the differentially accumulated flavonoids, phenylpropanoids and terpenoids were closely correlated with related DEGs. Furthermore, 30 miRNAs were found to be negatively associated with putative targets, and they were thought to be involved in target gene expression regulation. These miRNAs probably play a vital role in the regulation of metabolite synthesis in hexaploid S. canadensis. The two cytotypes of S. canadensis differ in the allelopathic metabolite synthesis and this difference is associated with regulation of expression of a range of genes. These results suggest that changes in gene expression may underlying the increased invasive potential of the polyploidy.
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Zou L, Liu W, Zhang Z, Edwards EJ, Gathunga EK, Fan P, Duan W, Li S, Liang Z. Gene body demethylation increases expression and is associated with self-pruning during grape genome duplication. HORTICULTURE RESEARCH 2020; 7:84. [PMID: 32528696 PMCID: PMC7261773 DOI: 10.1038/s41438-020-0303-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 02/11/2020] [Accepted: 03/19/2020] [Indexed: 05/15/2023]
Abstract
A colchicine-induced autotetraploid grapevine exhibiting potentially valuable agronomic traits for grape production and breeding, including self-pruning, was identified. This study investigated DNA methylation variation and its role in gene expression during self-pruning in the autotetraploid grapevine. We used RNA-Seq to estimate differentially expressed genes between diploid and autotetraploid grapevine shoot tips. The genes showing increases in the autotetraploid were mainly related to stress response pathways, whereas those showing decreases in the autotetraploid were related to biological metabolism and biosynthesis. Whole-genome bisulfite sequencing was performed to produce single-base methylomes for the diploid and autotetraploid grapevines. Comparison between the methylomes revealed that they were conserved in CG and CHG contexts. In the autotetraploid grapevine, hypodifferentially methylated regions (DMRs) and hyper-DMRs in the gene body increased or decreased gene expression, respectively. Our results indicated that a hypo-DMR in the ACO1 gene body increased its expression and might promote self-pruning. This study reports that hypo-DMRs in the gene body increase gene expression in plants and reveals the mechanism underlying the changes in the modifications affecting gene expression during genome duplication. Overall, our results provide valuable information for understanding the relationships between DNA methylation, gene expression, and autotetraploid breeding in grape.
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Affiliation(s)
- Luming Zou
- Beijing Key Laboratory of Grape Science and Enology and CAS Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093 PR China
- University of the Chinese Academy of Sciences, Beijing, 100049 PR China
| | - Wenwen Liu
- Beijing Key Laboratory of Grape Science and Enology and CAS Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093 PR China
- University of the Chinese Academy of Sciences, Beijing, 100049 PR China
| | - Zhan Zhang
- Beijing Key Laboratory of Grape Science and Enology and CAS Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093 PR China
- University of the Chinese Academy of Sciences, Beijing, 100049 PR China
- College of Life Science, Shanxi Normal University, Shanxi, 041004 PR China
| | | | - Elias Kirabi Gathunga
- Beijing Key Laboratory of Grape Science and Enology and CAS Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093 PR China
- University of the Chinese Academy of Sciences, Beijing, 100049 PR China
| | - Peige Fan
- Beijing Key Laboratory of Grape Science and Enology and CAS Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093 PR China
| | - Wei Duan
- Beijing Key Laboratory of Grape Science and Enology and CAS Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093 PR China
| | - Shaohua Li
- Beijing Key Laboratory of Grape Science and Enology and CAS Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093 PR China
- University of the Chinese Academy of Sciences, Beijing, 100049 PR China
| | - Zhenchang Liang
- Beijing Key Laboratory of Grape Science and Enology and CAS Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093 PR China
- Sino-Africa Joint Research Center, Chinese Academy of Sciences, Wuhan, 430074 PR China
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Iannicelli J, Guariniello J, Tossi V, Regalado J, Di Ciaccio L, van Baren C, Pitta Álvarez S, Escandón A. The “polyploid effect” in the breeding of aromatic and medicinal species. SCIENTIA HORTICULTURAE 2020. [PMID: 0 DOI: 10.1016/j.scienta.2019.108854] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
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Li Y, Li W, Fu C, Song Y, Fu Q. Lonicerae japonicae flos and Lonicerae flos: a systematic review of ethnopharmacology, phytochemistry and pharmacology. PHYTOCHEMISTRY REVIEWS : PROCEEDINGS OF THE PHYTOCHEMICAL SOCIETY OF EUROPE 2020; 19:1-61. [PMID: 32206048 PMCID: PMC7088551 DOI: 10.1007/s11101-019-09655-7] [Citation(s) in RCA: 77] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2019] [Accepted: 11/11/2019] [Indexed: 05/05/2023]
Abstract
Lonicerae japonicae flos (called Jinyinhua, JYH in Chinese), flowers or flower buds of Lonicera japonica Thunberg, is an extremely used traditional edible-medicinal herb. Pharmacological studies have already proved JYH ideal clinical therapeutic effects on inflammation and infectious diseases and prominent effects on multiple targets in vitro and in vivo, such as pro-inflammatory protein inducible nitric oxide synthase, toll-like receptor 4, interleukin-1 receptor. JYH and Lonicerae flos [called Shanyinhua, SYH in Chinese, flowers or flower buds of Lonicera hypoglauca Miquel, Lonicera confusa De Candolle or Lonicera macrantha (D.Don) Spreng] which belongs to the same family of JYH were once recorded as same herb in multiple versions of Chinese Pharmacopoeia (ChP). However, they were listed as two different herbs in 2005 Edition ChP, leading to endless controversy since they have close proximity on plant species, appearances and functions, together with traditional applications. In the past decades, there has no literature regarding to systematical comparison on the similarity concerning research achievements of the two herbs. This review comprehensively presents similarities and differences between JYH and SYH retrospectively, particularly proposing them the marked differences in botanies, phytochemistry and pharmacological activities which can be used as evidence of separate list of JYH and SYH. Furthermore, deficiencies on present studies have also been discussed so as to further research could use for reference.
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Affiliation(s)
- Yuke Li
- Pharmacy College of Chengdu University of Traditional Chinese Medicine, Chengdu, 611137 People’s Republic of China
| | - Wen Li
- Pharmacy College of Chengdu University of Traditional Chinese Medicine, Chengdu, 611137 People’s Republic of China
| | - Chaomei Fu
- Pharmacy College of Chengdu University of Traditional Chinese Medicine, Chengdu, 611137 People’s Republic of China
| | - Ying Song
- Teaching Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu, 610075 People’s Republic of China
| | - Qiang Fu
- School of Pharmacy and Bioengineering, Chengdu University, Chengdu, 610106 People’s Republic of China
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Hadle JJ, Russell FL, Beck JB. Are buffalograss (Buchloë dactyloides) cytotypes spatially and ecologically differentiated? AMERICAN JOURNAL OF BOTANY 2019; 106:1116-1125. [PMID: 31334845 DOI: 10.1002/ajb2.1327] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2019] [Accepted: 05/13/2019] [Indexed: 06/10/2023]
Abstract
PREMISE Although autopolyploidy is common among dominant Great Plains grasses, the distribution of cytotypes within a given species is typically poorly understood. This study aims to establish the geographic distribution of cytotypes within buffalograss (Buchloë dactyloides) and to assess whether individual cytotypes have differing ecological tolerances. METHODS A range-wide set of 578 B. dactyloides individuals was obtained through field collecting and sampling from herbarium specimens. The cytotype of each sample was estimated by determining allele numbers at 13 simple sequence repeat loci, a strategy that was assessed by comparing estimated to known cytotype in 79 chromosome-counted samples. Ecological differentiation between the dominant tetraploid and hexaploid cytotypes was assessed with analyses of macroclimatic variables. RESULTS Simple sequence repeat variation accurately estimated cytotype in 89% of samples from which a chromosome count had been obtained. Applying this approach to samples of unknown ploidy established that diploids and pentaploids are rare, with the common tetraploid and hexaploid cytotypes generally occurring in sites to the north/west (tetraploid) or south/east (hexaploid) portions of the species range. Both MANOVA and niche modeling approaches identified significant but subtle differences in macroclimatic conditions at the set of locations occupied by these two dominant cytotypes. CONCLUSIONS Incorporating chromosome count vouchers and cytotype-estimated herbarium records allowed us to perform the largest study of cytotype niche differentiation to date. Buffalograss cytotypes differ greatly in frequency, the common tetraploid and hexaploid cytotypes are non-randomly distributed, and these two cytotypes are subtly ecologically differentiated.
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Affiliation(s)
- Jacob J Hadle
- Department of Biological Sciences, Wichita State University, Wichita, KS, 67260, USA
| | - F Leland Russell
- Department of Biological Sciences, Wichita State University, Wichita, KS, 67260, USA
| | - James B Beck
- Department of Biological Sciences, Wichita State University, Wichita, KS, 67260, USA
- Botanical Research Institute of Texas, Fort Worth, TX, 76107, USA
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Vogt G, Dorn NJ, Pfeiffer M, Lukhaup C, Williams BW, Schulz R, Schrimpf A. The dimension of biological change caused by autotriploidy: A meta-analysis with triploid crayfish Procambarus virginalis and its diploid parent Procambarus fallax. ZOOL ANZ 2019. [DOI: 10.1016/j.jcz.2019.06.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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Long YL, Qiao F, Jiang XF, Cong HQ, Sun ML, Xu ZJ. Screening and analysis on the differentially expression genes between diploid and autotetraploid watermelon by using of digital gene expression profile. BRAZ J BIOL 2019; 79:180-190. [DOI: 10.1590/1519-6984.174475] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2017] [Accepted: 12/27/2017] [Indexed: 11/22/2022] Open
Abstract
Abstract Synthetic polyploids are key breeding materials for watermelon. Compared with diploid watermelon, the tetraploid watermelon often exhibit wide phenotypic differences and differential gene expression. Digital gene expression (DGE) profile technique was performed in this study to present gene expression patterns in an autotetraploid and its progenitor diploid watermelon, and deferentially expressed genes (DEGs) related to the abiotic and biotic stress were also addressed. Altogether, 4,985 DEGs were obtained in the autotetraploid against its progenitor diploid, and 66.02% DEGs is up-regulated. GO analysis shows that these DEGs mainly distributed in ‘metabolic process’, ‘cell’ and ‘catalytic activity’. KEGG analysis revealed that these DEGs mainly cover ‘metabolic pathways’, ‘secondary metabolites’ and ‘ribosome’. Moreover, 134 tolerance related DEGs were identified which cover osmotic adjustment substance, protective enzymes/protein, signaling proteins and pathogenesis-related proteins. This study present the differential expression of stress related genes and global gene expression patterns at background level in autotetraploid watermelons. These new evidences could supplement the molecular theoretical basis for the better resistance after the genome doubling in the gourd family.
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Affiliation(s)
- Y. L. Long
- Hainan University, China; Chinese Academy of Tropical Agricultural Sciences, China
| | - F. Qiao
- Chinese Academy of Tropical Agricultural Sciences, China
| | | | - H. Q. Cong
- Chinese Academy of Tropical Agricultural Sciences, China
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Meiotic correlations and bound arm associations between the diploid and autotetraploid of Withania somnifera (L.) Dunal, and implications on genetic stability. THE NUCLEUS 2019. [DOI: 10.1007/s13237-018-0251-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
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Xu C, Ge Y, Wang J. Molecular basis underlying the successful invasion of hexaploid cytotypes of Solidago canadensis L.: Insights from integrated gene and miRNA expression profiling. Ecol Evol 2019; 9:4820-4852. [PMID: 31031947 PMCID: PMC6476842 DOI: 10.1002/ece3.5084] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Revised: 02/20/2019] [Accepted: 03/01/2019] [Indexed: 12/04/2022] Open
Abstract
Dissecting complex connections between cytogenetic traits (ploidy levels) and plant invasiveness has emerged as a popular research subject in the field of invasion biology. Although recent work suggests that polyploids are more likely to be invasive than their corresponding diploids, the molecular basis underlying the successful invasion of polyploids remains largely unexplored. To this end, we adopted an RNA-seq and sRNA-seq approach to describe how polyploids mediate invasiveness differences in two contrasting cytotypes of Solidago canadensis L., a widespread wild hexaploid invader with localized cultivated diploid populations. Our analysis of the leaf transcriptome revealed 116,801 unigenes, of which 12,897 unigenes displayed significant differences in expression levels. A substantial number of these differentially expressed unigenes (DEUs) were significantly associated with the biosynthesis of secondary metabolites, carbohydrate metabolism, lipid metabolism, and environmental adaptation pathways. Gene Ontology term enrichment-based categorization of DEU-functions was consistent with this observation, as terms related to single-organism, cellular, and metabolic processes including catalytic, binding, transporter, and enzyme regulator activity were over-represented. Concomitantly, 186 miRNAs belonging to 44 miRNA families were identified in the same leaf tissues, with 59 miRNAs being differentially expressed. Furthermore, we discovered 83 miRNA-target interacting pairs that were oppositely regulated, and a meticulous study of these targets depicted that several unigenes encoding transcription factors, DNA methyltransferase, and leucine-rich repeat receptor-like kinases involved in the stress response were greatly influenced. Collectively, these transcriptional and epigenetic data provide new insights into miRNA-mediated gene expression regulatory mechanisms that may operate in hexaploid cytotypes to favor successful invasion.
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Affiliation(s)
- Chanchan Xu
- State Key Laboratory of Hybrid Rice, College of Life SciencesWuhan UniversityWuhanChina
| | - Yimeng Ge
- State Key Laboratory of Hybrid Rice, College of Life SciencesWuhan UniversityWuhanChina
| | - Jianbo Wang
- State Key Laboratory of Hybrid Rice, College of Life SciencesWuhan UniversityWuhanChina
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Li QQ, Zhang J, Liu JH, Yu BY. Morphological and chemical studies of artificial Andrographis paniculata polyploids. Chin J Nat Med 2018; 16:81-89. [PMID: 29455732 DOI: 10.1016/s1875-5364(18)30033-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Indexed: 01/28/2023]
Abstract
Andrographis paniculata (Burm. f.) Nees (AP) is commonly used for the treatment of many infectious diseases and has been cultivated widely in Asian countries, and has been included in United States Pharmacopoeia as a dietary supplement, but the cultivars of A. paniculata are not abundant due to its self-pollinated. With the aims to enrich AP resources and provide materials for after breeding we explored the polyploidy induction. Different explants, colchicine concentration, and treatment time were tested. After identification by flow cytometry, eleven polyploid plants with different morphologic traits were obtained. The agronomic traits and andrographolide concentration of the polyploids were improved greatly. One of the polyploids (serial 3-7) was chosen for further study. The traits of the second and third generation polyploids (serial 3-7) were stable. Compared with the normal plants, the seeds (2nd generation) weight increased by 31%, and the andrographolide concentration of the leaves increased by 14% (2nd) and 28% (3rd). In conclusion, AP autopolyploids with different morphologic traits were established successfully for the first time, and the polyploids induction might be effective for crop improvement of AP.
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Affiliation(s)
- Qi-Qing Li
- Institute of Biotechnology for TCM research, School of Traditional Chinese Medicine, China Pharmaceutical University, Nanjing 211198, China
| | - Jian Zhang
- State Key Laboratory of Natural Medicines, China Pharmaceutical University, Nanjing 210009, China
| | - Ji-Hua Liu
- Institute of Biotechnology for TCM research, School of Traditional Chinese Medicine, China Pharmaceutical University, Nanjing 211198, China
| | - Bo-Yang Yu
- Jiangsu Key Laboratory of TCM Evaluation and Translational Research, China Pharmaceutical University, Nanjing 210009, China.
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Sharma SK, Yamamoto M, Mukai Y. Delineation of methylation and histone modification: the epigenetic regulatory marks show slightly altered distribution with the elevation in ploidy level in the orchid Dendrobium nobile. THE NUCLEUS 2018. [DOI: 10.1007/s13237-018-0231-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
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47
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Hao DC, Xiao PG. Deep in shadows: Epigenetic and epigenomic regulations of medicinal plants. CHINESE HERBAL MEDICINES 2018. [DOI: 10.1016/j.chmed.2018.02.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022] Open
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48
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Voyaging through chromosomal studies in hairy root cultures towards unravelling their relevance to medicinal plant research: An updated review. THE NUCLEUS 2018. [DOI: 10.1007/s13237-018-0227-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022] Open
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Dar TH, Raina SN, Goel S. Cytogenetic and molecular evidences revealing genomic changes after autopolyploidization: a case study of synthetic autotetraploid Phlox drummondii Hook. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2017; 23:641-650. [PMID: 28878502 PMCID: PMC5567706 DOI: 10.1007/s12298-017-0445-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2017] [Revised: 04/08/2017] [Accepted: 04/17/2017] [Indexed: 05/20/2023]
Abstract
Polyploidy is known to be common in plants; indeed most of the world's economically important crop plants are polyploids. Recent studies revealed extensive genomic changes in synthetic polyploids after genome doubling, although most of the information available is with regards to allopolyploids and little information have been generated in autopolyploids. In the present study, we used Phlox drummondii Hooker (2n = 2x = 14) as a model plant to observe genomic changes, if any, in synthetic autopolyploids. Colchitetraploids were produced and followed through different generations (C0, C1, C2 and C3). Male meiosis analysis showed differences between the frequency of both quadrivalents and bivalents from C0 to C2 generations. RAPD analysis revealed 2.8, 1.6, 2.1 and 3.2% polymorphism in C0, C1, C2 and C3 colchitetraploids respectively. The polymorphic fragments were further characterized after cloning. Dot blot assay was performed to confirm high copy/low copy nature of fragments showing variation. The analysis revealed changes in both repetitive and non-repetitive regions. Out of the six fragments only one fragment T01 was found to be of high copy, while four fragments were of the moderate copy and one fragment of the low copy nature.
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Affiliation(s)
- Tanvir H. Dar
- Department of Botany, University of Delhi, Delhi, 110007 India
- Centre for Biodiversity Studies, School of Biosciences & Biotechnology, Present Address: Baba Ghulam Shah Badshah University, Rajouri, 185234 Jammu and Kashmir India
| | - Soom N. Raina
- Amity Institute of Biotechnology, Amity University, Sector- 125, Noida, 201303 UP India
| | - Shailendra Goel
- Department of Botany, University of Delhi, Delhi, 110007 India
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Javadian N, Karimzadeh G, Sharifi M, Moieni A, Behmanesh M. In vitro polyploidy induction: changes in morphology, podophyllotoxin biosynthesis, and expression of the related genes in Linum album (Linaceae). PLANTA 2017; 245:1165-1178. [PMID: 28293732 DOI: 10.1007/s00425-017-2671-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Accepted: 03/04/2017] [Indexed: 05/22/2023]
Abstract
Induction of tetraploidy was performed and podophyllotoxin production increased by upregulating the expression level and enzyme activity of genes related to its biosynthesis in tetraploid compared to diploid Linum album. Linum album is a valuable medicinal plant that produces antiviral and anticancer compounds including podophyllotoxin (PTOX). To achieve homogeneous materials, in vitro diploid clones were established, and their nodal segments were exposed to different concentrations and durations of colchicine. This resulted in successful tetraploidy induction, confirmed by flow cytometry, and is being reported for the first time. The highest efficiency of tetraploid induction (22%) was achieved after 72 h exposure to 2.5-mM colchicine treatment. The stable tetraploids were produced after being subcultured three times, and their ploidy stability was confirmed after each subculture. The effects of autopolyploidy were measured on the morphological and phytochemical characteristics, as well as enzyme activity and the expression levels of some key genes involved in the PTOX biosynthetic pathway, including phenylalanine ammonia-lyase (PAL), cinnamoyl-Coa reductase (CCR), cinnamyl-alcohol dehydrogenase (CAD), and pinoresinol-lariciresinol reductase (PLR). The tetraploid plants had larger leaves and stomata (length and width) and lower density stomata. Increasing the ploidy level from diploid to tetraploid resulted in 1.39- and 1.23-fold enhancement of PTOX production, respectively, in the leaves and stem. The increase in PTOX content was associated with upregulated activities of some enzymes studied related to its biosynthetic pathway and the expression of the corresponding genes. The expression of the PAL gene and PLR enzymatic activity had the most positive correlation with the ploidy level in both leaf and stem tissues. Our results verified that autotetraploid induction is a useful breeding method, remarkably increasing the PTOX content in the leaves and stem of L. album.
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Affiliation(s)
- Neda Javadian
- Department of Plant Breeding, Faculty of Agriculture, Tarbiat Modares University, P. O. Box 14115-336, Tehran, Iran
| | - Ghasem Karimzadeh
- Department of Plant Breeding, Faculty of Agriculture, Tarbiat Modares University, P. O. Box 14115-336, Tehran, Iran.
| | - Mohsen Sharifi
- Department of Plant Biology, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran
| | - Ahmad Moieni
- Department of Plant Breeding, Faculty of Agriculture, Tarbiat Modares University, P. O. Box 14115-336, Tehran, Iran
| | - Mehrdad Behmanesh
- Department of Genetics, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran
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