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Ng S, De Clercq I, Van Aken O, Law SR, Ivanova A, Willems P, Giraud E, Van Breusegem F, Whelan J. Anterograde and retrograde regulation of nuclear genes encoding mitochondrial proteins during growth, development, and stress. MOLECULAR PLANT 2014; 7:1075-93. [PMID: 24711293 DOI: 10.1093/mp/ssu037] [Citation(s) in RCA: 120] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Mitochondrial biogenesis and function in plants require the expression of over 1000 nuclear genes encoding mitochondrial proteins (NGEMPs). The expression of these genes is regulated by tissue-specific, developmental, internal, and external stimuli that result in a dynamic organelle involved in both metabolic and a variety of signaling processes. Although the metabolic and biosynthetic machinery of mitochondria is relatively well understood, the factors that regulate these processes and the various signaling pathways involved are only beginning to be identified at a molecular level. The molecular components of anterograde (nuclear to mitochondrial) and retrograde (mitochondrial to nuclear) signaling pathways that regulate the expression of NGEMPs interact with chloroplast-, growth-, and stress-signaling pathways in the cell at a variety of levels, with common components involved in transmission and execution of these signals. This positions mitochondria as important hubs for signaling in the cell, not only in direct signaling of mitochondrial function per se, but also in sensing and/or integrating a variety of other internal and external signals. This integrates and optimizes growth with energy metabolism and stress responses, which is required in both photosynthetic and non-photosynthetic cells.
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Affiliation(s)
- Sophia Ng
- ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, Australia Joint Research Laboratory in Genomics and Nutriomics, College of Life Sciences, Zhejiang University, Hangzhou, 310058, P.R. China
| | - Inge De Clercq
- Department of Plant Systems Biology, VIB, and Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium
| | - Olivier Van Aken
- ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, Australia
| | - Simon R Law
- Department of Botany, ARC Centre of Excellence in Plant Energy Biology, School of Life Science, La Trobe University, Bundoora 3086, Victoria, Australia
| | - Aneta Ivanova
- Department of Botany, ARC Centre of Excellence in Plant Energy Biology, School of Life Science, La Trobe University, Bundoora 3086, Victoria, Australia
| | - Patrick Willems
- Department of Plant Systems Biology, VIB, and Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium Department of Medical Protein Research and Department of Biochemistry, 9000 Ghent, Belgium
| | - Estelle Giraud
- ARC Centre of Excellence in Plant Energy Biology, University of Western Australia, Australia Present address: Illumina, ANZ, 1 International Court, Scoresby Victoria 3179, Australia
| | - Frank Van Breusegem
- Department of Plant Systems Biology, VIB, and Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium
| | - James Whelan
- Department of Botany, ARC Centre of Excellence in Plant Energy Biology, School of Life Science, La Trobe University, Bundoora 3086, Victoria, Australia
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Ivanova A, Law SR, Narsai R, Duncan O, Lee JH, Zhang B, Van Aken O, Radomiljac JD, van der Merwe M, Yi K, Whelan J. A Functional Antagonistic Relationship between Auxin and Mitochondrial Retrograde Signaling Regulates Alternative Oxidase1a Expression in Arabidopsis. PLANT PHYSIOLOGY 2014; 165:1233-1254. [PMID: 24820025 PMCID: PMC4081334 DOI: 10.1104/pp.114.237495] [Citation(s) in RCA: 76] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2014] [Accepted: 05/04/2014] [Indexed: 05/18/2023]
Abstract
The perception and integration of stress stimuli with that of mitochondrion function are important during periods of perturbed cellular homeostasis. In a continuous effort to delineate these mitochondrial/stress-interacting networks, forward genetic screens using the mitochondrial stress response marker alternative oxidase 1a (AOX1a) provide a useful molecular tool to identify and characterize regulators of mitochondrial stress signaling (referred to as regulators of alternative oxidase 1a [RAOs] components). In this study, we reveal that mutations in genes coding for proteins associated with auxin transport and distribution resulted in a greater induction of AOX1a in terms of magnitude and longevity. Three independent mutants for polarized auxin transport, rao3/big, rao4/pin-formed1, and rao5/multidrug-resistance1/abcb19, as well as the Myb transcription factor rao6/asymmetric leaves1 (that displays altered auxin patterns) were identified and resulted in an acute sensitivity toward mitochondrial dysfunction. Induction of the AOX1a reporter system could be inhibited by the application of auxin analogs or reciprocally potentiated by blocking auxin transport. Promoter activation studies with AOX1a::GUS and DR5::GUS lines further confirmed a clear antagonistic relationship between the spatial distribution of mitochondrial stress and auxin response kinetics, respectively. Genome-wide transcriptome analyses revealed that mitochondrial stress stimuli, such as antimycin A, caused a transient suppression of auxin signaling and conversely, that auxin treatment repressed a part of the response to antimycin A treatment, including AOX1a induction. We conclude that mitochondrial stress signaling and auxin signaling are reciprocally regulated, balancing growth and stress response(s).
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Affiliation(s)
- Aneta Ivanova
- Australian Research Council Centre of Excellence in Plant Energy Biology, Department of Botany, School of Life Science, La Trobe University, Bundoora, Victoria 3086, Australia (A.I., S.R.L., O.D., B.Z., J.D.R., J.W.);Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (A.I., R.N., J.-H.L., O.V.A., J.D.R., M.v.d.M.); andState Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (K.Y.)
| | - Simon R Law
- Australian Research Council Centre of Excellence in Plant Energy Biology, Department of Botany, School of Life Science, La Trobe University, Bundoora, Victoria 3086, Australia (A.I., S.R.L., O.D., B.Z., J.D.R., J.W.);Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (A.I., R.N., J.-H.L., O.V.A., J.D.R., M.v.d.M.); andState Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (K.Y.)
| | - Reena Narsai
- Australian Research Council Centre of Excellence in Plant Energy Biology, Department of Botany, School of Life Science, La Trobe University, Bundoora, Victoria 3086, Australia (A.I., S.R.L., O.D., B.Z., J.D.R., J.W.);Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (A.I., R.N., J.-H.L., O.V.A., J.D.R., M.v.d.M.); andState Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (K.Y.)
| | - Owen Duncan
- Australian Research Council Centre of Excellence in Plant Energy Biology, Department of Botany, School of Life Science, La Trobe University, Bundoora, Victoria 3086, Australia (A.I., S.R.L., O.D., B.Z., J.D.R., J.W.);Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (A.I., R.N., J.-H.L., O.V.A., J.D.R., M.v.d.M.); andState Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (K.Y.)
| | - Jae-Hoon Lee
- Australian Research Council Centre of Excellence in Plant Energy Biology, Department of Botany, School of Life Science, La Trobe University, Bundoora, Victoria 3086, Australia (A.I., S.R.L., O.D., B.Z., J.D.R., J.W.);Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (A.I., R.N., J.-H.L., O.V.A., J.D.R., M.v.d.M.); andState Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (K.Y.)
| | - Botao Zhang
- Australian Research Council Centre of Excellence in Plant Energy Biology, Department of Botany, School of Life Science, La Trobe University, Bundoora, Victoria 3086, Australia (A.I., S.R.L., O.D., B.Z., J.D.R., J.W.);Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (A.I., R.N., J.-H.L., O.V.A., J.D.R., M.v.d.M.); andState Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (K.Y.)
| | - Olivier Van Aken
- Australian Research Council Centre of Excellence in Plant Energy Biology, Department of Botany, School of Life Science, La Trobe University, Bundoora, Victoria 3086, Australia (A.I., S.R.L., O.D., B.Z., J.D.R., J.W.);Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (A.I., R.N., J.-H.L., O.V.A., J.D.R., M.v.d.M.); andState Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (K.Y.)
| | - Jordan D Radomiljac
- Australian Research Council Centre of Excellence in Plant Energy Biology, Department of Botany, School of Life Science, La Trobe University, Bundoora, Victoria 3086, Australia (A.I., S.R.L., O.D., B.Z., J.D.R., J.W.);Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (A.I., R.N., J.-H.L., O.V.A., J.D.R., M.v.d.M.); andState Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (K.Y.)
| | - Margaretha van der Merwe
- Australian Research Council Centre of Excellence in Plant Energy Biology, Department of Botany, School of Life Science, La Trobe University, Bundoora, Victoria 3086, Australia (A.I., S.R.L., O.D., B.Z., J.D.R., J.W.);Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (A.I., R.N., J.-H.L., O.V.A., J.D.R., M.v.d.M.); andState Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (K.Y.)
| | - KeKe Yi
- Australian Research Council Centre of Excellence in Plant Energy Biology, Department of Botany, School of Life Science, La Trobe University, Bundoora, Victoria 3086, Australia (A.I., S.R.L., O.D., B.Z., J.D.R., J.W.);Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (A.I., R.N., J.-H.L., O.V.A., J.D.R., M.v.d.M.); andState Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (K.Y.)
| | - James Whelan
- Australian Research Council Centre of Excellence in Plant Energy Biology, Department of Botany, School of Life Science, La Trobe University, Bundoora, Victoria 3086, Australia (A.I., S.R.L., O.D., B.Z., J.D.R., J.W.);Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (A.I., R.N., J.-H.L., O.V.A., J.D.R., M.v.d.M.); andState Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China (K.Y.)
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