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Jeong YY, Noh YS, Kim SW, Seo PJ. Efficient regeneration of protoplasts from Solanum lycopersicum cultivar Micro-Tom. Biol Methods Protoc 2024; 9:bpae008. [PMID: 38414647 PMCID: PMC10898868 DOI: 10.1093/biomethods/bpae008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Revised: 01/29/2024] [Accepted: 02/02/2024] [Indexed: 02/29/2024] Open
Abstract
Protoplast regeneration has become a key platform for genetic and genome engineering. However, we lack reliable and reproducible methods for efficient protoplast regeneration for tomato (Solanum lycopersicum) cultivars. Here, we optimized cell and tissue culture methods for protoplast isolation, microcallus proliferation, shoot regeneration, and plantlet establishment of the tomato cultivar Micro-Tom. A thin layer of alginate was applied to protoplasts isolated from third to fourth true leaves and cultured at an optimal density of 1 × 105 protoplasts/ml. We determined the optimal culture media for protoplast proliferation, callus formation, de novo shoot regeneration, and root regeneration. Regenerated plantlets exhibited morphologically normal growth and sexual reproduction. The entire regeneration process, from protoplasts to flowering plants, was accomplished within 5 months. The optimized protoplast regeneration platform enables biotechnological applications, such as genome engineering, as well as basic research on plant regeneration in Solanaceae species.
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Affiliation(s)
- Yeong Yeop Jeong
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
- Plant Genomics and Breeding Institute, Seoul National University, Seoul 08826, Korea
- Department of Biological Sciences, Sungkyunkwan University, Suwon 16419, Korea
| | - Yoo-Sun Noh
- School of Biological Sciences, Seoul National University, Seoul 08826, Korea
| | - Suk Weon Kim
- Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup 56212, Korea
| | - Pil Joon Seo
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
- Plant Genomics and Breeding Institute, Seoul National University, Seoul 08826, Korea
- Department of Biological Sciences, Sungkyunkwan University, Suwon 16419, Korea
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2
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Optimization of Isolation and Transformation of Protoplasts from Uncaria rhynchophylla and Its Application to Transient Gene Expression Analysis. Int J Mol Sci 2023; 24:ijms24043633. [PMID: 36835049 PMCID: PMC9962833 DOI: 10.3390/ijms24043633] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Revised: 02/02/2023] [Accepted: 02/10/2023] [Indexed: 02/16/2023] Open
Abstract
Protoplast-based engineering has become an important tool for basic plant molecular biology research and developing genome-edited crops. Uncaria rhynchophylla is a traditional Chinese medicinal plant with a variety of pharmaceutically important indole alkaloids. In this study, an optimized protocol for U. rhynchophylla protoplast isolation, purification, and transient gene expression was developed. The best protoplast separation protocol was found to be 0.8 M D-mannitol, 1.25% Cellulase R-10, and 0.6% Macerozyme R-10 enzymolysis for 5 h at 26 °C in the dark with constant oscillation at 40 rpm/min. The protoplast yield was as high as 1.5 × 107 protoplasts/g fresh weight, and the survival rate of protoplasts was greater than 90%. Furthermore, polyethylene glycol (PEG)-mediated transient transformation of U. rhynchophylla protoplasts was investigated by optimizing different crucial factors affecting transfection efficiency, including plasmid DNA amount, PEG concentration, and transfection duration. The U. rhynchophylla protoplast transfection rate was highest (71%) when protoplasts were transfected overnight at 24 °C with the 40 µg of plasmid DNA for 40 min in a solution containing 40% PEG. This highly efficient protoplast-based transient expression system was used for subcellular localization of transcription factor UrWRKY37. Finally, a dual-luciferase assay was used to detect a transcription factor promoter interaction by co-expressing UrWRKY37 with a UrTDC-promoter reporter plasmid. Taken together, our optimized protocols provide a foundation for future molecular studies of gene function and expression in U. rhynchophylla.
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3
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Bae SH, Noh YS, Seo PJ. REGENOMICS: A web-based application for plant REGENeration-associated transcriptOMICS analyses. Comput Struct Biotechnol J 2022; 20:3234-3247. [PMID: 35832616 PMCID: PMC9249971 DOI: 10.1016/j.csbj.2022.06.033] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 06/13/2022] [Accepted: 06/13/2022] [Indexed: 01/09/2023] Open
Abstract
In plants, differentiated somatic cells exhibit an exceptional ability to regenerate new tissues, organs, or whole plants. Recent studies have unveiled core genetic components and pathways underlying cellular reprogramming and de novo tissue regeneration in plants. Although high-throughput analyses have led to key discoveries in plant regeneration, a comprehensive organization of large-scale data is needed to further enhance our understanding of plant regeneration. Here, we collected all currently available transcriptome datasets related to wounding responses, callus formation, de novo organogenesis, somatic embryogenesis, and protoplast regeneration to construct REGENOMICS, a web-based application for plant REGENeration-associated transcriptOMICS analyses. REGENOMICS supports single- and multi-query analyses of plant regeneration-related gene-expression dynamics, co-expression networks, gene-regulatory networks, and single-cell expression profiles. Furthermore, it enables user-friendly transcriptome-level analysis of REGENOMICS-deposited and user-submitted RNA-seq datasets. Overall, we demonstrate that REGENOMICS can serve as a key hub of plant regeneration transcriptome analysis and greatly enhance our understanding on gene-expression networks, new molecular interactions, and the crosstalk between genetic pathways underlying each mode of plant regeneration. The REGENOMICS web-based application is available at http://plantregeneration.snu.ac.kr.
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Affiliation(s)
- Soon Hyung Bae
- Department of Chemistry, Seoul National University, Seoul 08826, South Korea
| | - Yoo-Sun Noh
- School of Biological Sciences, Seoul National University, Seoul 08826, South Korea
- Research Center for Plant Plasticity, Seoul National University, Seoul 08826, South Korea
| | - Pil Joon Seo
- Department of Chemistry, Seoul National University, Seoul 08826, South Korea
- Plant Genomics and Breeding Institute, Seoul National University, Seoul 08826, South Korea
- Research Institute of Basic Sciences, Seoul National University, Seoul 08826, South Korea
- Corresponding author at: Department of Chemistry, Seoul National University, Seoul 08826, South Korea.
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4
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Charlot F, Goudounet G, Nogué F, Perroud PF. Physcomitrium patens Protoplasting and Protoplast Transfection. Methods Mol Biol 2022; 2464:3-19. [PMID: 35258821 DOI: 10.1007/978-1-0716-2164-6_1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Protoplast production with the moss Physcomitrium (Physcomitrella) patens has a long and successful history. As a tool, it has not only been the base of reverse genetic studies covering research fields as diverse as development, metabolism, or gene network regulation but also allowed its development as a bioengineering platform for protein production. We present here a standardized protocol for protoplast production from Physcomitrium (Physcomitrella) patens protonemata. Additionally, we detail procedures for their transfection, their plating for optimal regeneration, and three alternative selection approaches. To improve the consistency of protoplast regeneration, we describe a new option for protoplast embedding. The use of an alginate matrix to regenerate moss protoplast alleviates the use of warm agarized medium. Thus, it optimizes transformed protoplast survival without any morphological detrimental effect or impact on transfection efficiency.
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Affiliation(s)
- Florence Charlot
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France
| | - Guillaume Goudounet
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France
| | - Fabien Nogué
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France
| | - Pierre-François Perroud
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France.
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5
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Yue JJ, Yuan JL, Wu FH, Yuan YH, Cheng QW, Hsu CT, Lin CS. Protoplasts: From Isolation to CRISPR/Cas Genome Editing Application. Front Genome Ed 2021; 3:717017. [PMID: 34713263 PMCID: PMC8525356 DOI: 10.3389/fgeed.2021.717017] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2021] [Accepted: 07/30/2021] [Indexed: 12/26/2022] Open
Abstract
In the clustered regulatory interspaced short palindromic repeats (CRISPR)/CRISPR associated protein (Cas) system, protoplasts are not only useful for rapidly validating the mutagenesis efficiency of various RNA-guided endonucleases, promoters, sgRNA designs, or Cas proteins, but can also be a platform for DNA-free gene editing. To date, the latter approach has been applied to numerous crops, particularly those with complex genomes, a long juvenile period, a tendency for heterosis, and/or self-incompatibility. Protoplast regeneration is thus a key step in DNA-free gene editing. In this report, we review the history and some future prospects for protoplast technology, including protoplast transfection, transformation, fusion, regeneration, and current protoplast applications in CRISPR/Cas-based breeding.
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Affiliation(s)
- Jin-Jun Yue
- Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou, China
| | - Jin-Ling Yuan
- Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou, China
| | - Fu-Hui Wu
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
| | - Yu-Hsuan Yuan
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
| | - Qiao-Wei Cheng
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
| | - Chen-Tran Hsu
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
| | - Choun-Sea Lin
- Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
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Jeong YY, Lee HY, Kim SW, Noh YS, Seo PJ. Optimization of protoplast regeneration in the model plant Arabidopsis thaliana. PLANT METHODS 2021; 17:21. [PMID: 33622383 PMCID: PMC7901198 DOI: 10.1186/s13007-021-00720-x] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Accepted: 02/08/2021] [Indexed: 05/06/2023]
Abstract
BACKGROUND Plants have a remarkable reprogramming potential, which facilitates plant regeneration, especially from a single cell. Protoplasts have the ability to form a cell wall and undergo cell division, allowing whole plant regeneration. With the growing need for protoplast regeneration in genetic engineering and genome editing, fundamental studies that enhance our understanding of cell cycle re-entry, pluripotency acquisition, and de novo tissue regeneration are essential. To conduct these studies, a reproducible and efficient protoplast regeneration method using model plants is necessary. RESULTS Here, we optimized cell and tissue culture methods for improving protoplast regeneration efficiency in Arabidopsis thaliana. Protoplasts were isolated from whole seedlings of four different Arabidopsis ecotypes including Columbia (Col-0), Wassilewskija (Ws-2), Nossen (No-0), and HR (HR-10). Among these ecotypes, Ws-2 showed the highest potential for protoplast regeneration. A modified thin alginate layer was applied to the protoplast culture at an optimal density of 1 × 106 protoplasts/mL. Following callus formation and de novo shoot regeneration, the regenerated inflorescence stems were used for de novo root organogenesis. The entire protoplast regeneration process was completed within 15 weeks. The in vitro regenerated plants were fertile and produced morphologically normal progenies. CONCLUSION The cell and tissue culture system optimized in this study for protoplast regeneration is efficient and reproducible. This method of Arabidopsis protoplast regeneration can be used for fundamental studies on pluripotency establishment and de novo tissue regeneration.
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Affiliation(s)
- Yeong Yeop Jeong
- Department of Chemistry, Seoul National University, Seoul, 08826, Korea
- Research Institute of Basic Sciences, Seoul National University, Seoul, 08826, Korea
- Department of Biological Sciences, Sungkyunkwan University, Suwon, 16419, Korea
| | - Hun-Young Lee
- Plant Genomics and Breeding Institute, Seoul National University, Seoul, 08826, Korea
| | - Suk Weon Kim
- Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup, 56212, Korea
| | - Yoo-Sun Noh
- Plant Genomics and Breeding Institute, Seoul National University, Seoul, 08826, Korea
- School of Biological Sciences, Seoul National University, Seoul, 08826, Korea
| | - Pil Joon Seo
- Department of Chemistry, Seoul National University, Seoul, 08826, Korea.
- Research Institute of Basic Sciences, Seoul National University, Seoul, 08826, Korea.
- Department of Biological Sciences, Sungkyunkwan University, Suwon, 16419, Korea.
- Plant Genomics and Breeding Institute, Seoul National University, Seoul, 08826, Korea.
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7
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Bidabadi SS, Jain SM. Cellular, Molecular, and Physiological Aspects of In Vitro Plant Regeneration. PLANTS 2020; 9:plants9060702. [PMID: 32492786 PMCID: PMC7356144 DOI: 10.3390/plants9060702] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Revised: 05/25/2020] [Accepted: 05/27/2020] [Indexed: 02/07/2023]
Abstract
Plants generally have the highest regenerative ability because they show a high degree of developmental plasticity. Although the basic principles of plant regeneration date back many years, understanding the cellular, molecular, and physiological mechanisms based on these principles is currently in progress. In addition to the significant effects of some factors such as medium components, phytohormones, explant type, and light on the regeneration ability of an explant, recent reports evidence the involvement of molecular signals in organogenesis and embryogenesis responses to explant wounding, induced plant cell death, and phytohormones interaction. However, some cellular behaviors such as the occurrence of somaclonal variations and abnormalities during the in vitro plant regeneration process may be associated with adverse effects on the efficacy of plant regeneration. A review of past studies suggests that, in some cases, regeneration in plants involves the reprogramming of distinct somatic cells, while in others, it is induced by the activation of relatively undifferentiated cells in somatic tissues. However, this review covers the most important factors involved in the process of plant regeneration and discusses the mechanisms by which plants monitor this process.
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Affiliation(s)
- Siamak Shirani Bidabadi
- Department of Horticulture, College of Agriculture, Isfahan University of Technology, Isfahan 84156-83111, Iran;
| | - S. Mohan Jain
- Department of Agricultural Sciences, University of Helsinki, PL-27 Helsinki, Finland
- Correspondence:
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8
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Liu W, Rudis MR, Cheplick MH, Millwood RJ, Yang JP, Ondzighi-Assoume CA, Montgomery GA, Burris KP, Mazarei M, Chesnut JD, Stewart CN. Lipofection-mediated genome editing using DNA-free delivery of the Cas9/gRNA ribonucleoprotein into plant cells. PLANT CELL REPORTS 2020; 39:245-257. [PMID: 31728703 DOI: 10.1007/s00299-019-02488-w] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Accepted: 11/06/2019] [Indexed: 05/23/2023]
Abstract
KEY MESSAGE A novel and robust lipofection-mediated transfection approach for the use of DNA-free Cas9/gRNA RNP for gene editing has demonstrated efficacy in plant cells. Precise genome editing has been revolutionized by CRISPR/Cas9 systems. DNA-based delivery of CRISPR/Cas9 is widely used in various plant species. However, protein-based delivery of the in vitro translated Cas9/guide RNA (gRNA) ribonucleoprotein (RNP) complex into plant cells is still in its infancy even though protein delivery has several advantages. These advantages include DNA-free delivery, gene-edited host plants that are not transgenic, ease of use, low cost, relative ease to be adapted to high-throughput systems, and low off-target cleavage rates. Here, we show a novel lipofection-mediated transfection approach for protein delivery of the preassembled Cas9/gRNA RNP into plant cells for genome editing. Two lipofection reagents, Lipofectamine 3000 and RNAiMAX, were adapted for successful delivery into plant cells of Cas9/gRNA RNP. A green fluorescent protein (GFP) reporter was fused in-frame with the C-terminus of the Cas9 protein and the fusion protein was successfully delivered into non-transgenic tobacco cv. 'Bright Yellow-2' (BY2) protoplasts. The optimal efficiencies for Lipofectamine 3000- and RNAiMAX-mediated protein delivery were 66% and 48%, respectively. Furthermore, we developed a biolistic method for protein delivery based on the known proteolistics technique. A transgenic tobacco BY2 line expressing an orange fluorescence protein reporter pporRFP was targeted for knockout. We found that the targeted mutagenesis frequency for our Lipofectamine 3000-mediated protein delivery was 6%. Our results showed that the newly developed lipofection-mediated transfection approach is robust for the use of the DNA-free Cas9/gRNA technology for genome editing in plant cells.
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Affiliation(s)
- Wusheng Liu
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, 37996, USA.
- Department of Horticultural Science, North Caroline State University, Raleigh, NC, 27607, USA.
| | - Mary R Rudis
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, 37996, USA
| | - Matthew H Cheplick
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, 37996, USA
| | - Reginald J Millwood
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, 37996, USA
| | - Jian-Ping Yang
- Synthetic Biology Research and Development, Thermo Fisher Scientific, Carlsbad, CA, 92008, USA
| | - Christine A Ondzighi-Assoume
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, 37996, USA
- Department of Agricultural and Environmental Sciences, Tennessee State University, Nashville, TN, 37209, USA
| | - Garrett A Montgomery
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, 37996, USA
| | - Kellie P Burris
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, 37996, USA
- Department of Food, Bioprocessing and Nutrition Sciences, North Caroline State University, Raleigh, NC, 27606, USA
| | - Mitra Mazarei
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, 37996, USA
| | - Jonathan D Chesnut
- Synthetic Biology Research and Development, Thermo Fisher Scientific, Carlsbad, CA, 92008, USA
| | - Charles Neal Stewart
- Department of Plant Sciences, University of Tennessee, Knoxville, TN, 37996, USA.
- Center for Agricultural Synthetic Biology, University of Tennessee Institute of Agriculture, Knoxville, TN, 37996, USA.
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9
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Yu Z, Boehm CR, Hibberd JM, Abell C, Haseloff J, Burgess SJ, Reyna-Llorens I. Droplet-based microfluidic analysis and screening of single plant cells. PLoS One 2018; 13:e0196810. [PMID: 29723275 PMCID: PMC5933695 DOI: 10.1371/journal.pone.0196810] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Accepted: 04/22/2018] [Indexed: 01/18/2023] Open
Abstract
Droplet-based microfluidics has been used to facilitate high-throughput analysis of individual prokaryote and mammalian cells. However, there is a scarcity of similar workflows applicable to rapid phenotyping of plant systems where phenotyping analyses typically are time-consuming and low-throughput. We report on-chip encapsulation and analysis of protoplasts isolated from the emergent plant model Marchantia polymorpha at processing rates of >100,000 cells per hour. We use our microfluidic system to quantify the stochastic properties of a heat-inducible promoter across a population of transgenic protoplasts to demonstrate its potential for assessing gene expression activity in response to environmental conditions. We further demonstrate on-chip sorting of droplets containing YFP-expressing protoplasts from wild type cells using dielectrophoresis force. This work opens the door to droplet-based microfluidic analysis of plant cells for applications ranging from high-throughput characterisation of DNA parts to single-cell genomics to selection of rare plant phenotypes.
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Affiliation(s)
- Ziyi Yu
- Department of Chemistry, University of Cambridge, Cambridge, United Kingdom
| | - Christian R. Boehm
- Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom
| | - Julian M. Hibberd
- Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom
| | - Chris Abell
- Department of Chemistry, University of Cambridge, Cambridge, United Kingdom
| | - Jim Haseloff
- Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom
| | - Steven J. Burgess
- Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom
- * E-mail: (SJB); (IR-L)
| | - Ivan Reyna-Llorens
- Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom
- * E-mail: (SJB); (IR-L)
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10
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Gözükirmizi N, Ari S, Oraler G, Okatan Y, Ünsal N. Callus induction, plant regeneration and chromosomal variations in barley. ACTA ACUST UNITED AC 2015. [DOI: 10.1111/j.1438-8677.1990.tb01416.x] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- N. Gözükirmizi
- Department of Biology; University of Istanbul; Vezneciler Istanbul Turkey
| | - S. Ari
- Department of Biology; University of Istanbul; Vezneciler Istanbul Turkey
| | - G. Oraler
- Department of Biology; University of Istanbul; Vezneciler Istanbul Turkey
| | - Y. Okatan
- Department of Biology; University of Istanbul; Vezneciler Istanbul Turkey
| | - N. Ünsal
- Department of Biology; University of Istanbul; Vezneciler Istanbul Turkey
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11
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Negrutiu I, Hinnisdaels S, Mouras A, Gill BS, Gharti-Chhetri GB, Davey MR, Gleba YY, Sidorov V, Jacobs M. Somatic versus sexual hybridization: features, facts and future. ACTA ACUST UNITED AC 2015. [DOI: 10.1111/j.1438-8677.1989.tb01350.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- I. Negrutiu
- Laboratory for Plant Genetics; Free University of Brussels; Paardenstraat 65 B1640 Sint-Genesius-Rode Belgium
| | - S. Hinnisdaels
- Laboratory for Plant Genetics; Free University of Brussels; Paardenstraat 65 B1640 Sint-Genesius-Rode Belgium
| | - A. Mouras
- Laboratory for Plant Genetics; Free University of Brussels; Paardenstraat 65 B1640 Sint-Genesius-Rode Belgium
- Laboratoire de Biologie Cellulaire; Université de Bordeaux II; Avenue des Facultés 33405 Talence France
| | - B. S. Gill
- Laboratory for Plant Genetics; Free University of Brussels; Paardenstraat 65 B1640 Sint-Genesius-Rode Belgium
- Kansas State University; Throckmorton Hall Manhattan Kansas 66506 USA
| | - G. B. Gharti-Chhetri
- Laboratory for Plant Genetics; Free University of Brussels; Paardenstraat 65 B1640 Sint-Genesius-Rode Belgium
| | - M. R. Davey
- Laboratory for Plant Genetics; Free University of Brussels; Paardenstraat 65 B1640 Sint-Genesius-Rode Belgium
- Department of Botany; University of Nottingham; Nottingham NG7 2RD UK
| | - Y. Y. Gleba
- Laboratory for Plant Genetics; Free University of Brussels; Paardenstraat 65 B1640 Sint-Genesius-Rode Belgium
- Academy of Sciences of Ukrainian SSR; Institute of Botany; Repina 2 252601, Kiev-GSP-1 USSR
| | - V. Sidorov
- Laboratory for Plant Genetics; Free University of Brussels; Paardenstraat 65 B1640 Sint-Genesius-Rode Belgium
- Academy of Sciences of Ukrainian SSR; Institute of Botany; Repina 2 252601, Kiev-GSP-1 USSR
| | - M. Jacobs
- Laboratory for Plant Genetics; Free University of Brussels; Paardenstraat 65 B1640 Sint-Genesius-Rode Belgium
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12
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Eeckhaut T, Lakshmanan PS, Deryckere D, Van Bockstaele E, Van Huylenbroeck J. Progress in plant protoplast research. PLANTA 2013. [PMID: 23955146 DOI: 10.1111/j.1399-3054.1992.tb04754.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
In this review we focus on recent progress in protoplast regeneration, symmetric and asymmetric hybridization and novel technology developments. Regeneration of new species and improved culture techniques opened new horizons for practical breeding in a number of crops. The importance of protoplast sources and embedding systems is discussed. The study of reactive oxygen species effects and DNA (de)condensation, along with thorough phytohormone monitoring, are in our opinion the most promising research topics in the further strive for rationalization of protoplast regeneration. Following, fusion and fragmentation progress is summarized. Genomic, transcriptomic and proteomic studies have led to better insights in fundamental processes such as cell wall formation, cell development and chromosome rearrangements in fusion products, whether or not obtained after irradiation. Advanced molecular screening methods of both genome and cytoplasmome facilitate efficient screening of both symmetric and asymmetric fusion products. We expect that emerging technologies as GISH, high resolution melting and next generation sequencing will pay major contributions to our insights of genome creation and stabilization, mainly after asymmetric hybridization. Finally, we demonstrate agricultural valorization of somatic hybridization through enumerating recent introgression of diverse traits in a number of commercial crops.
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Affiliation(s)
- Tom Eeckhaut
- Institute for Agricultural and Fisheries Research (ILVO), Plant Sciences Unit, Applied Genetics and Breeding, Caritasstraat 21, 9090, Melle, Belgium.
| | - Prabhu Shankar Lakshmanan
- Institute for Agricultural and Fisheries Research (ILVO), Plant Sciences Unit, Applied Genetics and Breeding, Caritasstraat 21, 9090, Melle, Belgium
- Department of Plant Production, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, 9000, Ghent, Belgium
| | - Dieter Deryckere
- Institute for Agricultural and Fisheries Research (ILVO), Plant Sciences Unit, Applied Genetics and Breeding, Caritasstraat 21, 9090, Melle, Belgium
| | - Erik Van Bockstaele
- Institute for Agricultural and Fisheries Research (ILVO), Plant Sciences Unit, Applied Genetics and Breeding, Caritasstraat 21, 9090, Melle, Belgium
- Department of Plant Production, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, 9000, Ghent, Belgium
| | - Johan Van Huylenbroeck
- Institute for Agricultural and Fisheries Research (ILVO), Plant Sciences Unit, Applied Genetics and Breeding, Caritasstraat 21, 9090, Melle, Belgium
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13
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14
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Potrykus I. Gene transfer methods for plants and cell cultures. CIBA FOUNDATION SYMPOSIUM 2007; 154:198-208; discussion 208-12. [PMID: 2086036 DOI: 10.1002/9780470514009.ch14] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Agrobacterium-mediated gene transfer provides a routine and efficient gene transfer system for a variety of plant species. As this biological vector does not, however, function with important plant species, numerous alternative approaches have been studied. Of those, direct gene transfer into protoplasts, microinjection and biolistics have been demonstrated to be effective. Others, for example, viral vectors, agroinfection, liposome injection and electrophoresis may have special merits, although transgenic plants have not been produced by these techniques yet. From methods based on pollen transformation, the pollen tube pathway, pollen maturation, incubation of dry seeds, incubation of tissues, liposome fusion with tissues, macroinjection, laser treatment and electroporation of tissues no proof of integrative transformation is available, so far, and it is difficult to envisage how these approaches will ever produce transgenic cells and plants. We discuss (a) why Agrobacterium does not function with all plants, (b) what merits and disadvantages we see for the effective methods, (c) what possibilities we foresee for some of the other approaches, and (d) why we do not expect the remaining ones to be successful.
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Affiliation(s)
- I Potrykus
- Institute for Plant Sciences, Swiss Federal Institute of Technology (ETH), ETH-Zentrum, Zurich
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15
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Abstract
The application of modern biotechnological approaches to cut flowers has clearly become instrumental and rewarding for the floriculture industry. In recent years, several gene-transfer procedures have been developed for some of the major commercial cut flowers. Using Agrobactrium or microprojectile bombardment, several basic protocols are now available. However, despite the great progress and interest in gene transfer to these crops, their transformation is routine in only a limited number of laboratories, and its application is still considered to be an "art form". This review summarizes the reported gene-transfer procedures for the main cut-flower crops, with an emphasis on the unique factors of each method and the recent progress in introducing new traits of horticultural interest into these species.
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Affiliation(s)
- A Zuker
- The Kennedy-Leigh Centre for Horticultural Research and The Otto Warburg Center for Biotechnology in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
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Abstract
In recent years, a large number of gene transfer methods have been developed. However, the results of these studies have often been published in such a way that it has been extremely difficult for researchers to assess the reliability and efficiency of the method, and to judge whether or not integrative transformation has occurred. Thus although an abundance of knowledge exists within the area of gene transfer, its documentation remains disjointed. This report summarises the recent progress which has been made in the field of gene transfer systems in plants and discusses the associated advantages, disadvantages and limitations in an attempt to clarify this issue.
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Watanabe M, Setoguchi D, Uehara K, Ohtsuka W, Watanabe Y. Apoptosis-like cell death of Brassica napus leaf protoplasts. THE NEW PHYTOLOGIST 2002; 156:417-426. [PMID: 33873578 DOI: 10.1046/j.1469-8137.2000.00536.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
• The cleavage of nuclear DNA into oligonucleosomal fragments that is the hallmark of apoptosis in animal cells occurs during the culture of Brassica napus leaf protoplasts. • The changes in nuclei of cultured Brassica napus leaf protoplasts were studied by propidium iodide (PI) and 4', 6-diamino-2-phenylindole, dihydrochloride (DAPI) staining, transmission electron microscopy, flow cytometry analysis, and DNA laddering staining with ethidium bromide and Southern hybridization. • Free 3'-OH termini of nuclear DNA fragments were labelled with DIG-dUTP, catalyzed by terminal deoxynucleotidyl transferase (TdT), and used as probes for Southern hybridization. This method (TUNEL on membrane) allowed visualization of DNA fragments with 3'-OH termini on a nylon membrane. • These results suggest that loss of viability of protoplast with culture time is accompanied by apoptosis-like cell death. However, the forms or processes undergoing to apoptotic cell death in B. napus leaf protoplasts appears to be different in some details to those in animal cells.
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Affiliation(s)
| | | | - Koichi Uehara
- Laboratory of Plant Morphology, Faculty of Horticulture, Chiba University, 648 Matsudo, Chiba, 271-8510, Japan
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Watanabe M, Suzuki K, Kawasaki H, Watanabe Y. Differential responses of Brassica napus and Petunia hybrida to leaf protoplast isolation stress. PHYSIOLOGIA PLANTARUM 2002; 114:645-651. [PMID: 11975740 DOI: 10.1034/j.1399-3054.2002.1140419.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Changes in the response to abiotic stress during the isolation of leaf protoplasts were compared between a recalcitrant species of Brassica napus and regenerating species of Petunia hybrida. Initially, levels of soluble free putrescine (put), spermidine (spd) and spermine (spm) in leaves and protoplasts were determined. The sum of these three polyamines increased in petunia and B. napus leaf protoplasts by 1.6-fold and 1.1-fold, respectively. The soluble free fraction of spd and spm decreased in B. napus but not in petunia protoplasts. During the isolation of leaf protoplasts from B. napus, the ratio of soluble free put to the total PAs almost doubled, but that of spd and spm declined significantly. Petunia leaf protoplasts treated with cyclohexylamine (CHA), an inhibitor of spermidine synthase, accumulated ammonia and soluble putrescine, but lost the soluble spermidine. The soluble polyamine levels of CHA-treated petunia leaf protoplasts corresponded with those in B. napus. Leaves were subjected to abiotic stress during the isolation of protoplasts, namely wounding and osmotic stress which changed soluble free polyamine levels in B. napus and petunia, respectively. Both B. napus and petunia leaf protoplasts showed an increase in ammonia, but total free amino acid content and activation of proteases were only enhanced in B. napus leaf protoplasts. These results suggest that in B. napus wounding initiated senescence of leaf protoplasts during their isolation, leading to a constant production of ethylene early in the culture.
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Affiliation(s)
- Masami Watanabe
- Laboratory of Plant Nutrition, Faculty of Horticulture, Chiba University, 648 Matsudo, Chiba 271-8510, Japan
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Krikorian AD. Strategies for "minimal growth maintenance" of cell cultures: a perspective on management for extended duration experimentation in the microgravity environment of a Space station. THE BOTANICAL REVIEW; INTERPRETING BOTANICAL PROGRESS 1996; 62:41-108. [PMID: 11540094 DOI: 10.1007/bf02868920] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
How cells manage without gravity and how they change in the absence of gravity are basic questions that only prolonged life on a Space station will enable us to answer. We know from investigations carried out on various kinds of Space vehicles and stations that profound physiological effects can and often to occur. We need to know more of the basic biochemistry and biophysics both of cells and of whole organisms in conditions of reduced gravity. The unique environment of Space affords plant scientists an unusual opportunity to carry out experiments in microgravity, but some major challenges must be faced before this can be done with confidence. Various laboratory activities that are routine on Earth take on special significance and offer problems that need imaginative resolution before even a relatively simple experiment can be reliably executed on a Space station. For example, scientists might wish to investigate whether adaptive or other changes that have occurred in the environment of Space are retained after return to Earth-normal conditions. Investigators seeking to carry out experiments in the low-gravity environment of Space using cultured cells will need to solve the problem of keeping cultures quiescent for protracted periods before an experiment is initiated, after periodic sampling is carried out, and after the experiment is completed. This review gives an evaluation of a range of strategies that can enable one to manipulate cell physiology and curtail growth dramatically toward this end. These strategies include cryopreservation, chilling, reduced oxygen, gel entrapment strategies, osmotic adjustment, nutrient starvation, pH manipulation, and the use of mitotic inhibitors and growth-retarding chemicals. Cells not only need to be rendered quiescent for protracted periods but they also must be recoverable and further grown if it is so desired. Elaboration of satisfactory procedures for management of cells and tissues at "near zero or minimal growth" will have great value and practical consequences for experimentation on Earth as well as in Space. All of the parameters and conditions and procedural details needed to meet all the specific objectives will be the basis of the design and fabrication of cell culture units for use in the Space environment. It is expected that this will be an evolutionary process.
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Affiliation(s)
- A D Krikorian
- Department of Biochemistry and Cell Biology, State University of New York at Stony Brook, NY 11794-5215, USA
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The potential of somatic hybridization in crop breeding. ACTA ACUST UNITED AC 1995. [DOI: 10.1007/978-94-011-0357-2_27] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
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Vasil V, Redway F, Vasil IK. Regeneration of Plants from Embryogenic Suspension Culture Protoplasts of Wheat (Triticum aestivum L.). Nat Biotechnol 1990. [DOI: 10.1038/nbt0590-429] [Citation(s) in RCA: 66] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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