Occasional intraguild predation structuring small mammal assemblages: the marsupialDidelphis auritain the Atlantic Forest of Brazil

Population genetic structure and phenotypic diversity of Aspidodera raillieti (Nematoda: Heterakoidea), a parasite of Didelphini marsupials in Brazil's South and Southeast Atlantic Forest

Background

The population genetics of parasites may be influenced by host specificity, life cycle, host geographical range, evolutionary history, and host population structure. The nematode Aspidodera raillieti infects different marsupial and rodent hosts in the Nearctic and Neotropical regions, implying a gene flow among populations. However, niche diversification of the main hosts of A. raillieti in superimposed areas may provide conditions for population genetic structuring within this parasite species. We examined the genetic structuring of A. raillieti infecting three marsupial species co-occurring along the South and Southeast Brazilian Atlantic Forest, a hotspot of biodiversity.

Methods

We employed morphometric analyses and partial mitochondrial cytochrome c oxidase I gene sequences (MT-CO1) to characterize populations via phylogenetic and phylogeographic analyses.

Results

Among 175 A. raillieti specimens recovered from the marsupial hosts Didelphis aurita, D. albiventris, and Philander quica, we identified 99 MT-CO1 haplotypes forming four haplogroups and four clades in networks and phylogenetic trees, respectively. Clades I and II encompassed parasites of D. albiventris from the South region, clade III comprised parasites of D. aurita from the South and Southeast regions, and clade IV encompassed parasites of D. aurita and D. albiventris from the South and Southeast regions and parasites of P. quica from the South region. High genetic differentiation between clades, with a high fixation index and greater genetic variation in the analysis of molecular variance (AMOVA), indicated low gene flow between clades. Haplotypes shared among host species revealed a lack of host specificity. A significant correlation in the Mantel test suggested parasite isolation by distance, while there was no evidence of geographical structure between populations. Negative neutrality test values for clades III and IV suggested recent population expansion. Morphometric differentiation between A. raillieti specimens recovered from different host species, as well as from different localities, was more evident in males.

Conclusion

The genetic structure of A. raillieti populations in the South and Southeast Atlantic Forest resulted from historical events rather than from current geographical distribution or host specificity. We also demonstrate morphometric variation associated with host species and localities, suggesting phenotypic plasticity to host attributes and to spatial variables.

Graphical Abstract

Supplementary Information

The online version contains supplementary material available at 10.1186/s13071-022-05288-6.

What are the main drivers of survival and recruitment in tropical forest marsupials? A 16-year study

Tropical forest marsupials exhibit large interannual variation in population sizes, with direct negative density dependence capturing the essential features of their dynamics. However, the demographic mechanisms underlying population growth rate and driving both survival and reproduction are still unclear. We used a 16-year capture-mark-recapture data set for five tropical forest marsupials to test for seasonal and interannual density dependence in survival and recruitment. Hypotheses regarding the effects of exogenous (rainfall and minimum temperature) factors on survival, recruitment, and reproductive parameters (fecundity, litter size, and proportion of reproductive females) were also tested. Population size negatively affected survival in three of five species. High population sizes in a given year reduced survival rates in the following year, with strong detrimental effects on males. Recruitment and proportion of reproductive females were highly dependent on weather variables, and were not affected by previous population sizes (except for Metachirus nudicaudatus). Fecundity (number of female offspring/female) was related negatively to population size only in the black-eared opossum (Didelphis aurita), while litter size was a relatively conservative parameter, largely independent of external conditions. Our analyses indicate that density-dependent survival is the mechanism that regulates population size of tropical forest marsupials, either through a reduction in survival or an increase in emigration rates. This general regulatory mechanism may be common to other marsupials in the Atlantic Forest and other tropical forests.

Marsupiais de florestas tropicais exibem grande variação interanual nos tamanhos populacionais, com dependência negativa e direta da densidade capturando a essência de sua dinâmica populacional. No entanto, os mecanismos demográficos subjacentes à taxa de crescimento populacional e determinantes da sobrevivência e reprodução ainda são incertos. Nós usamos 16 anos de dados de captura-marcação-recaptura de cinco espécies de marsupiais de florestas tropicais para avaliar a dependência de densidade sazonal e interanual na sobrevivência e recrutamento. Hipóteses sobre efeitos de fatores exógenos (pluviosidade e temperatura mínima) na sobrevivência, recrutamento e parâmetros reprodutivos (fecundidade, tamanho da ninhada e proporção de fêmeas reprodutivas) também foram testadas. O tamanho da população afetou negativamente a sobrevivência em três das cinco espécies. O tamanho populacional elevado em um ano reduziu as taxas de sobrevivência no ano seguinte, com efeitos mais negativos nos machos. Recrutamento e proporção de fêmeas reprodutivas foram dependentes das variáveis climáticas e não foram afetados pelos tamanhos populacionais anteriores (com exceção de Metachirus nudicaudatus). A fecundidade (número de filhotes fêmea/fêmea) foi relacionada negativamente ao tamanho da população do gambá-de-orelha-preta (Didelphis aurita), enquanto o tamanho da ninhada foi um parâmetro relativamente conservador e independente das condições externas. Nossas análises indicam que a sobrevivência dependente da densidade regula as populações de marsupiais em florestas tropicais, seja através da redução na sobrevivência ou no aumento da emigração. Esse mecanismo regulatório pode ser comum a outros marsupiais na Mata Atlântica e outras florestas tropicais.

Metacommunity structure of the helminths of the black-eared opossum Didelphis aurita in peri-urban, sylvatic and rural environments in south-eastern Brazil

Among the Brazilian marsupials, the species of the genus Didelphis are the most parasitized by helminths. This study aimed to describe the species composition and to analyse the helminth communities of the Atlantic Forest common opossum Didelphis aurita at infracommunity and component community levels using the Elements of Metacommunity Structure Analysis, considering peri-urban, sylvatic and rural environments in the state of Rio de Janeiro, Brazil. Seventy-three specimens of D. aurita were captured during the study. Fourteen species of helminths were collected: nine of the phylum Nematoda (Trichuris minuta, Trichuris didelphis, Globocephalus marsupialis, Heterostrongylus heterostrongylus, Travassostrongylus orloffi, Viannaia hamata, Aspidodera raillieti, Cruzia tentaculata and Turgida turgida); four of the phylum Platyhelminthes (three species of Trematoda, Duboisiella proloba, Brachylaima advena and Rhopalias coronatus, and one species of the class Cestoda); and one species of the phylum Acanthocephala (Oligacanthorhynchus microcephalus). More than 95% of the animals were infected with parasites. The most abundant parasite species were V. hamata, T. turgida, C. tentaculata and T. orloffi. The nematodes T. turgida, C. tentaculata and A. raillieti were the most dominant species in the three environments. The analysis of the metacommunity structure indicated a structured pattern as a function of the environmental gradient, but only when all localities were considered together. At the infracommunity and component community levels, quasi-nested and nested structures with stochastic species loss were observed, respectively. The results indicate that the settlement of helminth species in the opossums can be attributed to the heterogeneity among individual hosts in relation to their exposure to parasites and to extrinsic factors, which vary among habitats, considering a regional scale. On a local scale, the characteristics of this host species may promote homogenization among individual hosts in terms of their exposure to the helminths. This study constitutes a new host record for the species G. marsupialis and T. didelphis and represents a pioneering investigation of the helminth metacommunity of a Neotropical marsupial.

Diet overlap and spatial segregation between two neotropical marsupials revealed by multiple analytical approaches

Species co-existence depends on how organisms utilize their environment and resources. When two sympatric species are similar in some ecological requirements, their coexistence may arise from differences in resource use over time and/or space. Interactions among coexisting marsupials remain poorly understood, especially in the Neotropics. Here we combine spatial niche measurements, individual-resource networks, and isotopic niche approaches, to investigate the ecological strategies used by the Neotropical marsupials Didelphis aurita and Metachirus nudicaudatus to co-occur in an area of Serra do Mar State Park (southeast of Brazil). Both individual-resource networks and isotopic niche approaches indicate similar patterns of omnivory for both species. Isotopic analysis showed the species’ trophic niche to be similar, with 52% of overlap, and no differences between proportional contributions of each resource to their diets. Moreover, individual-resource network analysis found no evidence of diet nestedness or segregation. The trophic niche overlap observed was associated with spatial segregation between species. Despite using the same area over the year, D. aurita and M. nudicaudatus exhibited spatial segregation among seasons. These results illustrate that the detection of spatial segregation is scale-dependent and must be carefully considered. In conclusion, our findings provide a new perspective on the ecology of these two Neotropical marsupials by illustrating how the association of distinct but complementary methods can be applied to reach a more complete understanding of resource partitioning and species coexistence.

Marsupial population dynamics in a tropical rainforest: intraspecific competition and nonlinear effect of rainfall

Population fluctuations are the result of the combined action of endogenous (feedback structure) and exogenous factors (large- and local-scale climate variables). In this paper, we used a 13-year time series to identify the feedback structure in a population of the brown 4-eyed opossum Metachirus nudicaudatus and to test a hypothesis on the effects of El Niño Southern Oscillation and rainfall using Royama’s theoretical framework. Metachirus nudicaudatus was regulated by a strong 1st-order negative feedback, with intraspecific competition for food resources as the probable factor governing the endogenous system. Contrary to our expectations, El Niño did not explain the marsupial dynamics better than 1-year lagged rainfall, that may operate in 2 different manners: as a nonlinear perturbation effect influencing the strength of density dependence (intraspecific competition and intraguild predation) or as a lateral perturbation effect influencing the carrying capacity of the environment.

As flutuações populacionais são resultado da ação conjunta de fatores endógenos (estrutura de retroalimentação) e exógenos (variáveis climáticas locais e de larga escala). A partir de uma série temporal de 13 anos, nós identificamos a estrutura de retroalimentação da população da cuíca marrom de quatro olhos Metachirus nudicaudatus , e testamos hipóteses a respeito dos efeitos do El Niño Oscilação Sul e chuva utilizando a abordagem teórica de Royama. Metachirus nudicaudatus é regulado por uma forte retroalimentação negativa de primeira ordem, com a competição intraespecífica por recursos alimentares como o provável fator que rege o sistema endógeno. Ao contrário do que esperávamos, o El Niño não explicou a dinâmica populacional deste marsupial melhor do que a chuva com a defasagem de 1 ano, que pode atuar em duas formas: como um efeito de perturbação não-linear, influenciando a força da dependência densidade (competição intraespecífica e predação intraguilda), ou como um efeito de perturbação lateral, influenciando a capacidade de suporte do ambiente.

Microhabitat of small mammals at ground and understorey levels in a deciduous, southern Atlantic forest

Each animal species selects specific microhabitats for protection, foraging, or micro-climate. To understand the distribution patterns of small mammals on the ground and in the understorey, we investigated the use of microhabitats by small mammals in a deciduous forest of southern Brazil. Ten trap stations with seven capture points were used to sample the following microhabitats: liana, fallen log, ground litter, terrestrial ferns, simple-trunk tree, forked tree, and Piper sp. shrubs. Seven field phases were conducted, each for eight consecutive days, from September 2006 through January 2008. Four species of rodents (Akodon montensis, Sooretamys angouya, Oligoryzomys nigripes and Mus musculus) and two species of marsupials (Didelphis albiventris and Gracilinanus microtarsus) were captured. Captured species presented significant differences on their microhabitat use (ANOVA, p = 0.003), particularly between ground and understorey sites. Akodon montensis selected positively terrestrial ferns and trunks, S. angouya selected lianas, D. albiventris selected fallen trunks and Piper sp., and G. microtarsus choose tree trunks and lianas. We demonstrated that the local small-mammal assemblage does select microhabitats, with different types of associations between species and habitats. Besides, there is a strong evidence of habitat selection in order to diminish predation.