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Louveau T, Osbourn A. The Sweet Side of Plant-Specialized Metabolism. Cold Spring Harb Perspect Biol 2019; 11:cshperspect.a034744. [PMID: 31235546 DOI: 10.1101/cshperspect.a034744] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Glycosylation plays a major role in the structural diversification of plant natural products. It influences the properties of molecules by modifying the reactivity and solubility of the corresponding aglycones, so influencing cellular localization and bioactivity. Glycosylation of plant natural products is usually carried out by uridine diphosphate(UDP)-dependent glycosyltransferases (UGTs) belonging to the carbohydrate-active enzyme glycosyltransferase 1 (GT1) family. These enzymes transfer sugars from UDP-activated sugar moieties to small hydrophobic acceptor molecules. Plant GT1s generally show high specificity for their sugar donors and recognize a single UDP sugar as their substrate. In contrast, they are generally promiscuous with regard to acceptors, making them attractive biotechnological tools for small molecule glycodiversification. Although microbial hosts have traditionally been used for heterologous engineering of plant-derived glycosides, transient plant expression technology offers a potentially disruptive platform for rapid characterization of new plant glycosyltransferases and biosynthesis of complex glycosides.
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Affiliation(s)
- Thomas Louveau
- Department of Metabolic Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom
| | - Anne Osbourn
- Department of Metabolic Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom
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2
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Wen C, Huang W, He MM, Deng WL, Yu HH. Cloning and characterization of a glycosyltransferase from Catharanthus roseus for glycosylation of cardiotonic steroids and phenolic compounds. Biotechnol Lett 2019; 42:135-142. [PMID: 31734772 DOI: 10.1007/s10529-019-02756-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2019] [Accepted: 11/06/2019] [Indexed: 12/28/2022]
Abstract
OBJECTIVES To characterize a glycosyltransferase (UGT74AN3) from Catharanthus roseus and investigate its specificity toward cardiotonic steroids and phenolic compounds. RESULTS UGT74AN3, a novel permissive GT from C. roseus, displayed average high conversion rate (> 90%) toward eight structurally different cardiotonic steroids. Among them, resibufogenin, digitoxigenin, and uzarigenin gave 100% yield. Based on LC-MS, 1H-NMR and 13C-NMR analysis, structure elucidation of eight glycosides was consistent with 3-O-β-D-glucosides. We further confirmed UGT74AN3 was permissive enough to glycosylate curcumin, resveratrol, and phloretin. The cDNA sequence of UGT74AN3 contained an ORF of 1,425 nucleotides encoding 474 amino acids. UGT74AN3 performed the maximum catalytic activity at 40 °C, pH 8.0, and was divalent cation-independent. Km values of UGT74AN3 toward resibufogenin, digitoxigenin, and uzarigenin were 7.0 µM, 12.3 µM, and 17.4 µM, respectively. CONCLUSIONS UGT74AN3, a glycosyltransferase from a noncardenolide-producing plant, displayed catalytic efficiency toward cardiotonic steroids and phenolic compounds, which would make it feasible for glycosylation of bioactive molecules.
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Affiliation(s)
- Chao Wen
- Department of Medicine, Jinggangshan University, Ji'an, 343009, People's Republic of China.
| | - Wei Huang
- Institute of Traditional Chinese Medicine and Natural Products, College of Pharmacy, Jinan University, Guangzhou, 510632, People's Republic of China
| | - Miao-Miao He
- Department of Medicine, Jinggangshan University, Ji'an, 343009, People's Republic of China
| | - Wen-Li Deng
- Department of Medicine, Jinggangshan University, Ji'an, 343009, People's Republic of China
| | - Hai-Hong Yu
- Department of Medicine, Jinggangshan University, Ji'an, 343009, People's Republic of China
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3
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Baek YS, Goodrich LV, Brown PJ, James BT, Moose SP, Lambert KN, Riechers DE. Transcriptome Profiling and Genome-Wide Association Studies Reveal GSTs and Other Defense Genes Involved in Multiple Signaling Pathways Induced by Herbicide Safener in Grain Sorghum. FRONTIERS IN PLANT SCIENCE 2019; 10:192. [PMID: 30906302 PMCID: PMC6418823 DOI: 10.3389/fpls.2019.00192] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Accepted: 02/05/2019] [Indexed: 05/04/2023]
Abstract
Herbicide safeners protect cereal crops from herbicide injury by inducing genes and proteins involved in detoxification reactions, such as glutathione S-transferases (GSTs) and cytochrome P450s (P450s). Only a few studies have characterized gene or protein expression profiles for investigating plant responses to safener treatment in cereal crops, and most transcriptome analyses in response to safener treatments have been conducted in dicot model species that are not protected by safener from herbicide injury. In this study, three different approaches were utilized in grain sorghum (Sorghum bicolor (L.) Moench) to investigate mechanisms involved in safener-regulated signaling pathways. An initial transcriptome analysis was performed to examine global gene expression in etiolated shoot tissues of hybrid grain sorghum following treatment with the sorghum safener, fluxofenim. Most upregulated transcripts encoded detoxification enzymes, including P450s, GSTs, and UDP-dependent glucosyltransferases (UGTs). Interestingly, several of these upregulated transcripts are similar to genes involved with the biosynthesis and recycling/catabolism of dhurrin, an important chemical defense compound, in these seedling tissues. Secondly, 761 diverse sorghum inbred lines were evaluated in a genome-wide association study (GWAS) to determine key molecular-genetic factors governing safener-mediated signaling mechanisms and/or herbicide detoxification. GWAS revealed a significant single nucleotide polymorphism (SNP) associated with safener-induced response on chromosome 9, located within a phi-class SbGST gene and about 15-kb from a different phi-class SbGST. Lastly, the expression of these two candidate SbGSTs was quantified in etiolated shoot tissues of sorghum inbred BTx623 in response to fluxofenim treatment. SbGSTF1 and SbGSTF2 transcripts increased within 12-hr after fluxofenim treatment but the level of safener-induced expression differed between the two genes. In addition to identifying specific GSTs potentially involved in the safener-mediated detoxification pathway, this research elucidates a new direction for studying both constitutive and inducible mechanisms for chemical defense in cereal crop seedlings.
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Affiliation(s)
- You Soon Baek
- Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, United States
| | - Loren V. Goodrich
- Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, United States
- Jerseyville Research Center, Monsanto Company, Jerseyville, IL, United States
| | - Patrick J. Brown
- Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, United States
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
| | - Brandon T. James
- Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, United States
- HudsonAlpha Institute for Biotechnology, Huntsville, AL, United States
| | - Stephen P. Moose
- Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, United States
| | - Kris N. Lambert
- Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, United States
| | - Dean E. Riechers
- Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, United States
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Brazier‐Hicks M, Gershater M, Dixon D, Edwards R. Substrate specificity and safener inducibility of the plant UDP-glucose-dependent family 1 glycosyltransferase super-family. PLANT BIOTECHNOLOGY JOURNAL 2018; 16:337-348. [PMID: 28640934 PMCID: PMC5785338 DOI: 10.1111/pbi.12775] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Revised: 06/10/2017] [Accepted: 06/13/2017] [Indexed: 05/05/2023]
Abstract
Plants contain large numbers of family 1 UDP-glucose-dependent glycosyltransferases (UGTs), including members that conjugate xenobiotics. Arabidopsis contains 107 UGT genes with 99 family members successfully expressed as glutathione transferase (GST)-fusion proteins in E. coli. A high-throughput catalytic screen was developed based on quantification of the fusion by measuring GST activity. UGT activity using UDP-glucose as donor was then determined using 11 synthetic acceptors bearing hydroxyl, amino and thiol groups that had been shown to undergo conjugation in plant extracts. In total, 44 UGTs, largely members of the D and E groups, were active towards xenobiotics, glucosylating phenol and thiol acceptors. In contrast, N-glucosyltransferase (NGT) activity was almost exclusively restricted to a single enzyme, UGT72B1. Using DNA microarrays, the induction of UGT transcripts following treatment with the herbicide safener fenclorim was compared in Arabidopsis and rice. D and L group members were the most safener-inducible UGTs in both species. The respective Arabidopsis enzymes showed low conjugating activity towards xenobiotics. Using Genevestigator, a small group of safened D and L UGTs were consistently induced in response to biotic and abiotic stress suggestive of protective activities beyond xenobiotic detoxification in both species. The induction of other detoxifying gene families following treatment with fenclorim, namely cytochromes P450 and glutathione transferases, further confirmed the selective enhancement of related subfamily members in the two species giving new insight into the safening response in cereals, where herbicide tolerance is enhanced compared with dicots, which are unresponsive to these treatments.
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Affiliation(s)
- Melissa Brazier‐Hicks
- School of Agriculture, Food and Rural DevelopmentNewcastle UniversityNewcastle upon TyneUK
| | | | | | - Robert Edwards
- School of Agriculture, Food and Rural DevelopmentNewcastle UniversityNewcastle upon TyneUK
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5
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Di Sotto A, Vecchiato M, Abete L, Toniolo C, Giusti AM, Mannina L, Locatelli M, Nicoletti M, Di Giacomo S. Capsicum annuum L. var. Cornetto di Pontecorvo PDO: Polyphenolic profile and in vitro biological activities. J Funct Foods 2018. [DOI: 10.1016/j.jff.2017.11.041] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
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6
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Ahammed GJ, He BB, Qian XJ, Zhou YH, Shi K, Zhou J, Yu JQ, Xia XJ. 24-Epibrassinolide alleviates organic pollutants-retarded root elongation by promoting redox homeostasis and secondary metabolism in Cucumis sativus L. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2017; 229:922-931. [PMID: 28774551 DOI: 10.1016/j.envpol.2017.07.076] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2017] [Revised: 06/10/2017] [Accepted: 07/21/2017] [Indexed: 06/07/2023]
Abstract
Environmental pollution by organic pollutants (OPs) has become a global concern due to its detrimental effects on the environment and human health. As plants are used to remediate contaminated sites, understanding the responses of plants to various OPs and fortification of plant tolerance are of great significance. In this work, we studied the biochemical and molecular responses of cucumber plants to three well-known OPs, 2,4,6-trichlorophenol, chlorpyrifos and oxytetracycline in the absence or presence of 24-epibrassinolide (EBR), a potent regulator of plant growth and stress tolerance. The results showed that the selected three OPs retarded root elongation; however, the phytotoxic effects of OPs were attenuated by exogenous EBR. OPs induced accumulations of both hydrogen peroxide (H2O2) and nitric oxide (NO) in root tips and resulted in an increased malondialdehyde (MDA) content, an indicator of membrane lipid peroxidation. Exogenous EBR reduced accumulations of H2O2, NO and MDA in the roots by increasing the expression of antioxidant and detoxification genes and the activities of the corresponding enzymes. Intriguingly, EBR not only promoted the activities of glutathione S-transferase and glutathione reductase, but also increased the content of reduced glutathione without altering the content of oxidized glutathione, which resulted in a reduced redox state under OPs stress. Furthermore, EBR increased the free radical scavenging capacity, flavonoid content and the activity and transcription of secondary metabolism related enzymes. Our results suggest that EBR treatment may fortify secondary metabolism to enhance antioxidant capacity in response to OPs treatment, which might have potential implication in phytoremediation of OPs.
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Affiliation(s)
- Golam Jalal Ahammed
- Department of Horticulture, Zijingang Campus, Zhejiang University, Hangzhou 310058, PR China
| | - Bei-Bei He
- Department of Horticulture, Zijingang Campus, Zhejiang University, Hangzhou 310058, PR China
| | - Xiang-Jie Qian
- Department of Horticulture, Zijingang Campus, Zhejiang University, Hangzhou 310058, PR China
| | - Yan-Hong Zhou
- Department of Horticulture, Zijingang Campus, Zhejiang University, Hangzhou 310058, PR China
| | - Kai Shi
- Department of Horticulture, Zijingang Campus, Zhejiang University, Hangzhou 310058, PR China
| | - Jie Zhou
- Department of Horticulture, Zijingang Campus, Zhejiang University, Hangzhou 310058, PR China
| | - Jing-Quan Yu
- Department of Horticulture, Zijingang Campus, Zhejiang University, Hangzhou 310058, PR China; Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, 866 Yuhangtang Road, Hangzhou 310058, PR China; Key Laboratory of Horticultural Plants Growth, Development and Quality Improvement, Agricultural Ministry of China, Hangzhou 310058, PR China
| | - Xiao-Jian Xia
- Department of Horticulture, Zijingang Campus, Zhejiang University, Hangzhou 310058, PR China.
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7
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Peng RH, Qiu J, Tian YS, Gao JJ, Han HJ, Fu XY, Zhu B, Xu J, Wang B, Li ZJ, Wang LJ, Yao QH. Disulfide isomerase-like protein AtPDIL1-2 is a good candidate for trichlorophenol phytodetoxification. Sci Rep 2017; 7:40130. [PMID: 28059139 PMCID: PMC5216352 DOI: 10.1038/srep40130] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2016] [Accepted: 12/02/2016] [Indexed: 12/29/2022] Open
Abstract
Trichlorophenol (TCP) is a widely used and persistent environmentally toxic compound that poses a carcinogenic risk to humans. Phytoremediation is a proficient cleanup technology for organic pollutants. In this study, we found that the disulfide isomerase-like protein AtPDIL1-2 in plants is a good candidate for enhancing 2,4,6-TCP phytoremediation. The expression of AtPDIL1-2 in Arabidopsis was induced by 2,4,6-TCP. The heterologously expressed AtPDIL1-2 in Escherichia coli exhibited both oxidase and isomerase activities as protein disulfide isomerase and improved bacteria tolerance to 2,4,6-TCP. Further research revealed that transgenic tobacco overexpressing AtPDIL1-2 was more tolerant to high concentrations of 2,4,6-TCP and removed the toxic compound at far greater rates than the control plants. To elucidate the mechanism of action of AtPDIL1-2, we investigated the chemical interaction of AtPDIL1-2 with 2,4,6-TCP for the first time. HPLC analysis implied that AtPDIL1-2 exerts a TCP-binding activity. A suitable configuration of AtPDIL1-2-TCP binding was obtained by molecular docking studies using the AutoDock program. It predicted that the TCP binding site is located in the b-b' domain of AtPDIL1-2 and that His254 of the protein is critical for the binding interaction. These findings imply that AtPDIL1-2 can be used for TCP detoxification by the way of overexpression in plants.
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Affiliation(s)
- Ri-He Peng
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences; Shanghai Key Laboratory of Agricultural Genetics and Breeding, 2901 Beidi Rd., Shanghai, People’s Republic of China
| | - Jin Qiu
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences; Shanghai Key Laboratory of Agricultural Genetics and Breeding, 2901 Beidi Rd., Shanghai, People’s Republic of China
| | - Yong-Sheng Tian
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences; Shanghai Key Laboratory of Agricultural Genetics and Breeding, 2901 Beidi Rd., Shanghai, People’s Republic of China
| | - Jian-jie Gao
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences; Shanghai Key Laboratory of Agricultural Genetics and Breeding, 2901 Beidi Rd., Shanghai, People’s Republic of China
| | - Hong-juan Han
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences; Shanghai Key Laboratory of Agricultural Genetics and Breeding, 2901 Beidi Rd., Shanghai, People’s Republic of China
| | - Xiao-Yan Fu
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences; Shanghai Key Laboratory of Agricultural Genetics and Breeding, 2901 Beidi Rd., Shanghai, People’s Republic of China
| | - Bo Zhu
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences; Shanghai Key Laboratory of Agricultural Genetics and Breeding, 2901 Beidi Rd., Shanghai, People’s Republic of China
| | - Jing Xu
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences; Shanghai Key Laboratory of Agricultural Genetics and Breeding, 2901 Beidi Rd., Shanghai, People’s Republic of China
| | - Bo Wang
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences; Shanghai Key Laboratory of Agricultural Genetics and Breeding, 2901 Beidi Rd., Shanghai, People’s Republic of China
| | - Zhen-jun Li
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences; Shanghai Key Laboratory of Agricultural Genetics and Breeding, 2901 Beidi Rd., Shanghai, People’s Republic of China
| | - Li-juan Wang
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences; Shanghai Key Laboratory of Agricultural Genetics and Breeding, 2901 Beidi Rd., Shanghai, People’s Republic of China
| | - Quan-Hong Yao
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences; Shanghai Key Laboratory of Agricultural Genetics and Breeding, 2901 Beidi Rd., Shanghai, People’s Republic of China
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8
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Marsik P, Sisa M, Lacina O, Motkova K, Langhansova L, Rezek J, Vanek T. Metabolism of ibuprofen in higher plants: A model Arabidopsis thaliana cell suspension culture system. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2017; 220:383-392. [PMID: 27720542 DOI: 10.1016/j.envpol.2016.09.074] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2016] [Revised: 09/10/2016] [Accepted: 09/25/2016] [Indexed: 06/06/2023]
Abstract
The uptake and metabolism of ibuprofen (IBU) by plants at the cellular level was investigated using a suspension culture of A. thaliana. Almost all IBU added to the medium (200 μM) was metabolized or bound to insoluble structures in 5 days. More than 300 metabolites were determined by liquid chromatography-high resolution mass spectrometry (LC-HRMS) analysis, and most of these are first reported for plants here. Although hydroxylated derivatives formed by oxidation on the isobutyl side chain were the main first-step products of IBU degradation, conjugates of these products with sugar, methyl and amino acid groups were the dominant metabolites in the culture. The main portion of total added IBU (81%) was accumulated in the extractable intracellular pool, whereas the cultivation medium fraction contained only 19%. The amount of the insoluble cell-wall-bound IBU was negligible (0.005% of total IBU).
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Affiliation(s)
- P Marsik
- Institute of Experimental Botany AS CR, Rozvojova 263, 165 02 Prague, Czech Republic
| | - M Sisa
- Institute of Experimental Botany AS CR, Rozvojova 263, 165 02 Prague, Czech Republic
| | - O Lacina
- HPST, s.r.o., Písnická 372/20, 142 00 Prague, Czech Republic
| | - K Motkova
- Institute of Experimental Botany AS CR, Rozvojova 263, 165 02 Prague, Czech Republic
| | - L Langhansova
- Institute of Experimental Botany AS CR, Rozvojova 263, 165 02 Prague, Czech Republic
| | - J Rezek
- Institute of Experimental Botany AS CR, Rozvojova 263, 165 02 Prague, Czech Republic
| | - T Vanek
- Institute of Experimental Botany AS CR, Rozvojova 263, 165 02 Prague, Czech Republic.
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9
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El Amrani A, Dumas AS, Wick LY, Yergeau E, Berthomé R. "Omics" Insights into PAH Degradation toward Improved Green Remediation Biotechnologies. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2015; 49:11281-91. [PMID: 26352597 DOI: 10.1021/acs.est.5b01740] [Citation(s) in RCA: 91] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
This review summarizes recent knowledge of polycyclic aromatic hydrocarbons (PAHs) biotransformation by microorganisms and plants. Whereas most research has focused on PAH degradation either by plants or microorganisms separately, this review specifically addresses the interactions of plants with their rhizosphere microbial communities. Indeed, plant roots release exudates that contain various nutritional and signaling molecules that influence bacterial and fungal populations. The complex interactions of these populations play a pivotal role in the biodegradation of high-molecular-weight PAHs and other complex molecules. Emerging integrative approaches, such as (meta-) genomics, (meta-) transcriptomics, (meta-) metabolomics, and (meta-) proteomics studies are discussed, emphasizing how "omics" approaches bring new insight into decipher molecular mechanisms of PAH degradation both at the single species and community levels. Such knowledge address new pictures on how organic molecules are cometabolically degraded in a complex ecosystem and should help in setting up novel decontamination strategies based on the rhizosphere interactions between plants and their microbial associates.
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Affiliation(s)
- Abdelhak El Amrani
- University of Rennes 1 , CNRS/UMR 6553/OSUR, Ecosystems - Biodiversity - Evolution, 35042 Rennes Cedex, France
| | - Anne-Sophie Dumas
- University of Rennes 1 , CNRS/UMR 6553/OSUR, Ecosystems - Biodiversity - Evolution, 35042 Rennes Cedex, France
| | - Lukas Y Wick
- UFZ, Department of Environmental Microbiology, Helmholtz Centre for Environmental Research , Permoserstraße 15, D-04318 Leipzig, Germany
| | - Etienne Yergeau
- National Research Council Canada, Energy, Mining and Environment, Montreal, Quebec Canada
| | - Richard Berthomé
- Plant Genomics Research Unit, UMR INRA 1165 - CNRS 8114 - UEVE , 2, Gaston Crémieux St., CP5708, 91057 Evry Cedex, France
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10
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Oboh G, Ademosun AO, Ayeni PO, Omojokun OS, Bello F. Comparative effect of quercetin and rutin on α-amylase, α-glucosidase, and some pro-oxidant-induced lipid peroxidation in rat pancreas. ACTA ACUST UNITED AC 2014. [DOI: 10.1007/s00580-014-2040-5] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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11
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Molecular characterization of UGT94F2 and UGT86C4, two glycosyltransferases from Picrorhiza kurrooa: comparative structural insight and evaluation of substrate recognition. PLoS One 2013; 8:e73804. [PMID: 24066073 PMCID: PMC3774767 DOI: 10.1371/journal.pone.0073804] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2012] [Accepted: 07/24/2013] [Indexed: 11/25/2022] Open
Abstract
Uridine diphosphate glycosyltransferases (UGTs) are pivotal in the process of glycosylation for decorating natural products with sugars. It is one of the versatile mechanisms in determining chemical complexity and diversity for the production of suite of pharmacologically active plant natural products. Picrorhiza kurrooa is a highly reputed medicinal herb known for its hepato-protective properties which are attributed to a novel group of iridoid glycosides known as picrosides. Although the plant is well studied in terms of its pharmacological properties, very little is known about the biosynthesis of these important secondary metabolites. In this study, we identified two family-1 glucosyltransferases from P. kurrooa. The full length cDNAs of UGT94F4 and UGT86C4 contained open reading frames of 1455 and 1422 nucleotides, encoding polypeptides of 484 and 473 amino acids respectively. UGT94F2 and UGT86C4 showed differential expression pattern in leaves, rhizomes and inflorescence. To elucidate whether the differential expression pattern of the two Picrorhiza UGTs correlate with transcriptional regulation via their promoters and to identify elements that could be recognized by known iridoid-specific transcription factors, upstream regions of each gene were isolated and scanned for putative cis-regulatory elements. Interestingly, the presence of cis-regulatory elements within the promoter regions of each gene correlated positively with their expression profiles in response to different phytohormones. HPLC analysis of picrosides extracted from different tissues and elicitor-treated samples showed a significant increase in picroside levels, corroborating well with the expression profile of UGT94F2 possibly indicating its implication in picroside biosynthesis. Using homology modeling and molecular docking studies, we provide an insight into the donor and acceptor specificities of both UGTs identified in this study. UGT94F2 was predicted to be an iridoid-specific glucosyltransferase having maximum binding affinity towards 7-deoxyloganetin while as UGT86C4 was predicted to be a kaempferol-specific glucosyltransferase. These are the first UGTs being reported from P. kurrooa.
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12
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Tripathi SP, Bhadauriya A, Patil A, Sangamwar AT. Substrate selectivity of human intestinal UDP-glucuronosyltransferases (UGTs): in silico and in vitro insights. Drug Metab Rev 2013; 45:231-52. [PMID: 23461702 DOI: 10.3109/03602532.2013.767345] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The current drug development process aims to produce safe, effective drugs within a reasonable time and at a reasonable cost. Phase II metabolism (glucuronidation) can affect drug action and pharmacokinetics to a considerable extent and so its studies and prediction at initial stages of drug development are very imperative. Extensive glucuronidation is an obstacle to oral bioavailability because the first-pass glucuronidation [or premature clearance by UDP-glucuronosyltransferases (UGTs)] of orally administered agents frequently results in poor oral bioavailability and lack of efficacy. Modeling of new chemical entities/drugs for UGTs and their kinetic data can be useful in understanding the binding patterns to be used in the design of better molecules. This review concentrates on first-pass glucuronidation by intestinal UGTs, including their topology, expression profile, and pharmacogenomics. In addition, recent advances are discussed with respect to substrate selectivity at the binding pocket, structural requirements, and mechanism of enzyme actions.
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Affiliation(s)
- Satya Prakash Tripathi
- Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research (NIPER), Punjab, India
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13
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Dong D, Ako R, Hu M, Wu B. Understanding substrate selectivity of human UDP-glucuronosyltransferases through QSAR modeling and analysis of homologous enzymes. Xenobiotica 2012; 42:808-20. [PMID: 22385482 DOI: 10.3109/00498254.2012.663515] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
The UDP-glucuronosyltransferase (UGT) enzyme catalyzes the glucuronidation reaction which is a major metabolic and detoxification pathway in humans. Understanding the mechanisms for substrate recognition by UGT assumes great importance in an attempt to predict its contribution to xenobiotic/drug disposition in vivo. Spurred on by this interest, 2D/3D-quantitative structure activity relationships and pharmacophore models have been established in the absence of a complete mammalian UGT crystal structure. This review discusses the recent progress in modeling human UGT substrates including those with multiple sites of glucuronidation. A better understanding of UGT active site contributing to substrate selectivity (and regioselectivity) from the homologous enzymes (i.e. plant and bacterial UGTs, all belong to family 1 of glycosyltransferase (GT1)) is also highlighted, as these enzymes share a common catalytic mechanism and/or overlapping substrate selectivity.
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Affiliation(s)
- Dong Dong
- Department of Pharmacological and Pharmaceutical Sciences, College of Pharmacy, University of Houston, Houston, TX 77030, USA
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14
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Caputi L, Malnoy M, Goremykin V, Nikiforova S, Martens S. A genome-wide phylogenetic reconstruction of family 1 UDP-glycosyltransferases revealed the expansion of the family during the adaptation of plants to life on land. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2012; 69:1030-42. [PMID: 22077743 DOI: 10.1111/j.1365-313x.2011.04853.x] [Citation(s) in RCA: 197] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
For almost a decade, our knowledge on the organisation of the family 1 UDP-glycosyltransferases (UGTs) has been limited to the model plant A. thaliana. The availability of other plant genomes represents an opportunity to obtain a broader view of the family in terms of evolution and organisation. Family 1 UGTs are known to glycosylate several classes of plant secondary metabolites. A phylogeny reconstruction study was performed to get an insight into the evolution of this multigene family during the adaptation of plants to life on land. The organisation of the UGTs in the different organisms was also investigated. More than 1500 putative UGTs were identified in 12 fully sequenced and assembled plant genomes based on the highly conserved PSPG motif. Analyses by maximum likelihood (ML) method were performed to reconstruct the phylogenetic relationships existing between the sequences. The results of this study clearly show that the UGT family expanded during the transition from algae to vascular plants and that in higher plants the clustering of UGTs into phylogenetic groups appears to be conserved, although gene loss and gene gain events seem to have occurred in certain lineages. Interestingly, two new phylogenetic groups, named O and P, that are not present in A. thaliana were discovered.
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Affiliation(s)
- Lorenzo Caputi
- Fondazione Edmund Mach, Centro Ricerca e Innovazione, Department of Food Quality and Nutrition, Istituto Agrario San Michele all'Adige-IASMA, Via E. Mach 1, 38010 San Michele all'Adige-TN, Italy
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Hall D, Kim KH, De Luca V. Molecular cloning and biochemical characterization of three Concord grape (Vitis labrusca) flavonol 7-O-glucosyltransferases. PLANTA 2011; 234:1201-14. [PMID: 21755362 DOI: 10.1007/s00425-011-1474-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2011] [Accepted: 06/24/2011] [Indexed: 05/20/2023]
Abstract
Grapes berries produce and accumulate many reactive secondary metabolites, and encounter a wide range of pathogen- and human-derived xenobiotic compounds. The enzymatic glucosylation of these metabolites changes their reactivity, stability and subcellular location. Two ESTs with more than 90% nucleotide sequence identity to three full-length glucosyltransferases are expressed in several grape tissues. The full-length clones have more than 60% amino acid sequence similarity to previously characterized flavonoid 7-O-glucosyltransferases, catechin O-glucosyltransferases and anthocyanin 5-O-glucosyltransferases. In vitro, these enzymes glucosylate flavonols and the xenobiotic 2,4,5-trichlorophenol (TCP). Kinetic analysis indicates that TCP is the preferred substrate for these enzymes, while expression analysis reveals variable transcription of these genes in grape leaves, flowers and berry tissues. The in vivo role of these Vitis labrusca glucosyltransferases is discussed.
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Affiliation(s)
- Dawn Hall
- Department of Biological Sciences, Brock University, 500 Glenridge Ave, St. Catharines, ON, L2S 3A1, Canada
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Edwards R, Dixon DP, Cummins I, Brazier-Hicks M, Skipsey M. New Perspectives on the Metabolism and Detoxification of Synthetic Compounds in Plants. PLANT ECOPHYSIOLOGY 2011. [DOI: 10.1007/978-90-481-9852-8_7] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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17
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Louveau T, Leitao C, Green S, Hamiaux C, van der Rest B, Dechy-Cabaret O, Atkinson RG, Chervin C. Predicting the substrate specificity of a glycosyltransferase implicated in the production of phenolic volatiles in tomato fruit. FEBS J 2010; 278:390-400. [PMID: 21166996 DOI: 10.1111/j.1742-4658.2010.07962.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The volatile compounds that constitute the fruit aroma of ripe tomato (Solanum lycopersicum) are often sequestered in glycosylated form. A homology-based screen was used to identify the gene SlUGT5, which is a member of UDP-glycosyltransferase 72 family and shows specificity towards a range of substrates, including flavonoid, flavanols, hydroquinone, xenobiotics and chlorinated pollutants. SlUGT5 was shown to be expressed primarily in ripening fruit and flowers, and mapped to chromosome I in a region containing a QTL that affected the content of guaiacol and eugenol in tomato crosses. Recombinant SlUGT5 protein demonstrated significant activity towards guaiacol and eugenol, as well as benzyl alcohol and methyl salicylate; however, the highest in vitro activity and affinity was shown for hydroquinone and salicyl alcohol. NMR analysis identified isosalicin as the only product of salicyl alcohol glycosylation. Protein modelling and substrate docking analysis were used to assess the basis for the substrate specificity of SlUGT5. The analysis correctly predicted the interactions with SlUGT5 substrates, and also indicated that increased hydrogen bonding, due to the presence of a second hydrophilic group in methyl salicylate, guaiacol and hydroquinone, appeared to more favourably anchor these acceptors within the glycosylation site, leading to increased stability, higher activities and higher substrate affinities.
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Affiliation(s)
- Thomas Louveau
- Université de Toulouse, UMR Génomique et Biotechnologie des Fruits, INRA-INP/ENSAT, Castanet-Tolosan, France
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Pascal-Lorber S, Alsayeda H, Jouanin I, Debrauwer L, Canlet C, Laurent F. Metabolic fate of [¹⁴C]diuron and [¹⁴C]linuron in wheat (Triticum aestivum) and radish (Raphanus sativus). JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2010; 58:10935-10944. [PMID: 20886880 DOI: 10.1021/jf101937x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Metabolism of xenobiotics in plants usually occurs in three phases, phase I (primary metabolism), phase II (conjugation processes), and phase III (storage). The uptake and metabolism of [(14)C]diuron and [(14)C]linuron were investigated in wheat and radish. Seeds were sown in quartz sand and irrigated with a nutrient solution of either radioactive herbicide. Plants were harvested after two weeks, and metabolites were extracted and then analyzed by radio-reverse-high-performance liquid chromatography (HPLC). Uptake of the two molecules was higher in radish compared to wheat. Translocation of parent compounds and related metabolites from roots to aerial plant parts was important, especially for radish. A large proportion of extractable residues were found in radish whereas nonextractable residues amounted to 30% in wheat, mainly associated with roots. Chemical structure of metabolites was thereafter identified by acid, alkaline, and enzymatic hydrolyses followed by electrospray ionization mass spectrometry (ESI-MS) and proton nuclear magnetic resonance spectroscopy ((1)H NMR). This study highlighted the presence of diuron and linuron metabolites conjugated to sugars in addition to N-demethylation and N-demethoxylation products.
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Affiliation(s)
- Sophie Pascal-Lorber
- INRA, UMR1089 Xénobiotiques, 180 Chemin de Tournefeuille, F-31000 Toulouse, France
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Doran PM. Application of plant tissue cultures in phytoremediation research: Incentives and limitations. Biotechnol Bioeng 2009; 103:60-76. [DOI: 10.1002/bit.22280] [Citation(s) in RCA: 122] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Brazier-Hicks M, Offen WA, Gershater MC, Revett TJ, Lim EK, Bowles DJ, Davies GJ, Edwards R. Characterization and engineering of the bifunctional N- and O-glucosyltransferase involved in xenobiotic metabolism in plants. Proc Natl Acad Sci U S A 2007; 104:20238-43. [PMID: 18077347 PMCID: PMC2154415 DOI: 10.1073/pnas.0706421104] [Citation(s) in RCA: 217] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2007] [Indexed: 11/18/2022] Open
Abstract
The glucosylation of pollutant and pesticide metabolites in plants controls their bioactivity and the formation of subsequent chemical residues. The model plant Arabidopsis thaliana contains >100 glycosyltransferases (GTs) dedicated to small-molecule conjugation and, whereas 44 of these enzymes catalyze the O-glucosylation of chlorinated phenols, only one, UGT72B1, shows appreciable N-glucosylating activity toward chloroanilines. UGT72B1 is a bifunctional O-glucosyltransferase (OGT) and N-glucosyltransferase (NGT). To investigate this unique dual activity, the structure of the protein was solved, at resolutions up to 1.45 A, in various forms including the Michaelis complex with intact donor analog and trichlorophenol acceptor. The catalytic mechanism and basis for O/N specificity was probed by mutagenesis and domain shuffling with an orthologous enzyme from Brassica napus (BnUGT), which possesses only OGT activity. Mutation of BnUGT at just two positions (D312N and F315Y) installed high levels of NGT activity. Molecular modeling revealed the connectivity of these residues to H19 on UGT72B1, with its mutagenesis exclusively defining NGT activity in the Arabidopsis enzyme. These results shed light on the conjugation of nonnatural substrates by plant GTs, highlighting the catalytic plasticity of this enzyme class and the ability to engineer unusual and desirable transfer to nitrogen-based acceptors.
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Affiliation(s)
- Melissa Brazier-Hicks
- *Centre for Bioactive Chemistry, Durham University, Durham DH1 3LE, United Kingdom; and
| | - Wendy A. Offen
- York Structural Biology Laboratory, Department of Chemistry, and
| | - Markus C. Gershater
- *Centre for Bioactive Chemistry, Durham University, Durham DH1 3LE, United Kingdom; and
| | | | - Eng-Kiat Lim
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5YW, United Kingdom
| | - Dianna J. Bowles
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5YW, United Kingdom
| | - Gideon J. Davies
- York Structural Biology Laboratory, Department of Chemistry, and
| | - Robert Edwards
- *Centre for Bioactive Chemistry, Durham University, Durham DH1 3LE, United Kingdom; and
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