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Villellas J, Ehrlén J, Crone EE, Csergő AM, Garcia MB, Laine AL, Roach DA, Salguero-Gómez R, Wardle GM, Childs DZ, Elderd BD, Finn A, Munné-Bosch S, Bachelot B, Bódis J, Bucharova A, Caruso CM, Catford JA, Coghill M, Compagnoni A, Duncan RP, Dwyer JM, Ferguson A, Fraser LH, Griffoul E, Groenteman R, Hamre LN, Helm A, Kelly R, Laanisto L, Lonati M, Münzbergová Z, Nuche P, Olsen SL, Oprea A, Pärtel M, Petry WK, Ramula S, Rasmussen PU, Enri SR, Roeder A, Roscher C, Schultz C, Skarpaas O, Smith AL, Tack AJM, Töpper JP, Vesk PA, Vose GE, Wandrag E, Wingler A, Buckley YM. PHENOTYPIC PLASTICITY MASKS RANGE-WIDE GENETIC DIFFERENTIATION FOR VEGETATIVE BUT NOT REPRODUCTIVE TRAITS IN A SHORT-LIVED PLANT. Ecol Lett 2021; 24:2378-2393. [PMID: 34355467 DOI: 10.1111/ele.13858] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Revised: 05/13/2021] [Accepted: 05/19/2021] [Indexed: 12/12/2022]
Abstract
Genetic differentiation and phenotypic plasticity jointly shape intraspecific trait variation, but their roles differ among traits. In short-lived plants, reproductive traits may be more genetically determined due to their impact on fitness, whereas vegetative traits may show higher plasticity to buffer short-term perturbations. Combining a multi-treatment greenhouse experiment with observational field data throughout the range of a widespread short-lived herb, Plantago lanceolata, we (1) disentangled genetic and plastic responses of functional traits to a set of environmental drivers and (2) assessed how genetic differentiation and plasticity shape observational trait-environment relationships. Reproductive traits showed distinct genetic differentiation that largely determined observational patterns, but only when correcting traits for differences in biomass. Vegetative traits showed higher plasticity and opposite genetic and plastic responses, masking the genetic component underlying field-observed trait variation. Our study suggests that genetic differentiation may be inferred from observational data only for the traits most closely related to fitness.
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Affiliation(s)
- Jesus Villellas
- Departamento de Biodiversidad, Ecología y Evolución, Universidad Complutense de Madrid, Madrid, Spain.,School of Natural Sciences, Zoology, Trinity College Dublin, Dublin, Ireland
| | - Johan Ehrlén
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
| | - Elizabeth E Crone
- Department of Biology, Tufts University, Medford, Massachusetts, USA
| | - Anna Mária Csergő
- School of Natural Sciences, Zoology, Trinity College Dublin, Dublin, Ireland.,Department of Botany and Soroksár Botanical Garden, Szent István University, Budapest, Hungary
| | - Maria B Garcia
- Department of Biodiversity Conservation and Ecosystem Restoration, Pyrenean Institute of Ecology (CSIC), Zaragoza, Spain
| | - Anna-Liisa Laine
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland.,Organismal & Evolutionary Biology Research Program, Faculty of Biological & Environmental Sciences, University of Helsinki, Helsinki, Finland
| | - Deborah A Roach
- Department of Biology, University of Virginia, Charlottesville, Virginia, USA
| | - Roberto Salguero-Gómez
- Department of Zoology, University of Oxford, Oxford, UK.,Max Planck Institute for Demographic Research, Rostock, Germany.,School of Biological Sciences, The University of Queensland, St Lucia, Queensland, Australia
| | - Glenda M Wardle
- School of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia
| | - Dylan Z Childs
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK
| | - Bret D Elderd
- Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, USA
| | - Alain Finn
- School of Natural Sciences, Zoology, Trinity College Dublin, Dublin, Ireland
| | - Sergi Munné-Bosch
- Department of Evolutionary Biology, Ecology and Environmental Sciences, Faculty of Biology, University of Barcelona, Barcelona, Spain.,Institut de Recerca de la Biodiversitat, Universitat de Barcelona, Barcelona, Spain
| | - Benedicte Bachelot
- Department of Plant Biology, Ecology and Evolution, Oklahoma State University, Stillwater, Oklahoma, USA
| | - Judit Bódis
- Department of Plant Sciences and Biotechnology, Georgikon Faculty, University of Pannonia, Keszthely, Hungary
| | - Anna Bucharova
- Biodiversity and Ecosystem Research Group, Institut of Landscape Ecology, University of Münster, Germany.,Plant Evolutionary Ecology, Institut of Evolution and Ecology, University of Tübingen, Tübingen, Germany
| | - Christina M Caruso
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Jane A Catford
- Department of Geography, King's College London, London, UK.,Biological Sciences, University of Southampton, Southampton, UK
| | - Matthew Coghill
- Department of Natural Resource Sciences, Thompson Rivers University, Kamloops, British Columbia, Canada
| | - Aldo Compagnoni
- Institute of Biology, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | - Richard P Duncan
- Institute for Applied Ecology, University of Canberra, Canberra, Australian Capital Territory, Australia
| | - John M Dwyer
- School of Biological Sciences, The University of Queensland, St Lucia, Queensland, Australia.,CSIRO Land & Water, EcoSciences Precinct, Dutton Park, Queensland, Australia
| | | | - Lauchlan H Fraser
- Department of Natural Resource Sciences, Thompson Rivers University, Kamloops, British Columbia, Canada
| | | | | | - Liv Norunn Hamre
- Department of Environmental Sciences, Western Norway University of Applied Sciences, Sogndal, Norway
| | - Aveliina Helm
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Ruth Kelly
- School of Natural Sciences, Zoology, Trinity College Dublin, Dublin, Ireland.,Agri-Food and Biosciences Institute, Belfast, Northern Ireland, UK
| | - Lauri Laanisto
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
| | - Michele Lonati
- Department of Agriculture, Forest and Food Science, University of Torino, Grugliasco, Italy
| | - Zuzana Münzbergová
- Department of Botany, Faculty of Science, Charles University, Prague, Czech Republic.,Department of Population Ecology, Institute of Botany, Czech Academy of Sciences, Prague, Czech Republic
| | - Paloma Nuche
- School of Natural Sciences, Zoology, Trinity College Dublin, Dublin, Ireland
| | | | - Adrian Oprea
- Botanic Garden "Anastasie Fatu", University "Alexandru Ioan Cuza" Iaşi, Romania
| | - Meelis Pärtel
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - William K Petry
- Department of Plant & Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA
| | - Satu Ramula
- Department of Biology, University of Turku, Turku, Finland
| | - Pil U Rasmussen
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden.,The National Research Centre for the Working Environment, Copenhagen, Denmark
| | - Simone Ravetto Enri
- Department of Agriculture, Forest and Food Science, University of Torino, Grugliasco, Italy
| | - Anna Roeder
- Department of Physiological Diversity, Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Christiane Roscher
- Department of Physiological Diversity, Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Cheryl Schultz
- School of Biological Sciences, Washington State University, Vancouver, Washington, USA
| | - Olav Skarpaas
- Natural History Museum, University of Oslo, Oslo, Norway
| | - Annabel L Smith
- School of Natural Sciences, Zoology, Trinity College Dublin, Dublin, Ireland.,School of Agriculture and Food Sciences, University of Queensland, Gatton, Queensland, Australia
| | - Ayco J M Tack
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
| | | | - Peter A Vesk
- School of BioSciences, University of Melbourne, Melbourne, Victoria, Australia
| | - Gregory E Vose
- Department of Ecology and Evolutionary Biology, University of California, Irvine, California, USA
| | - Elizabeth Wandrag
- Institute for Applied Ecology, University of Canberra, Canberra, Australian Capital Territory, Australia.,Department of Biology, University of York, York, UK
| | - Astrid Wingler
- School of Biological, Earth & Environmental Sciences and Environmental Research Institute, University College Cork, Cork, Ireland
| | - Yvonne M Buckley
- School of Natural Sciences, Zoology, Trinity College Dublin, Dublin, Ireland.,School of Biological Sciences, The University of Queensland, St Lucia, Queensland, Australia
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Wahl HE, Raudabaugh DB, Bach EM, Bone TS, Luttenton MR, Cichewicz RH, Miller AN. What lies beneath? Fungal diversity at the bottom of Lake Michigan and Lake Superior. JOURNAL OF GREAT LAKES RESEARCH 2018; 44:263-270. [PMID: 29736110 PMCID: PMC5935459 DOI: 10.1016/j.jglr.2018.01.001] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Fungi are phylogenetically diverse organisms found in nearly every environment as key contributors to the processes of nutrient cycling and decomposition. To date, most fungal diversity has been documented from terrestrial habitats leaving aquatic habitats underexplored. In particular, comparatively little is known about fungi inhabiting freshwater lakes, particularly the benthic zone, which may serve as an untapped resource for fungal biodiversity. Advances in technology allowing for direct sequencing of DNA from environmental samples provide a new opportunity to investigate freshwater benthic fungi. In this study, we employed both culture-dependent and culture-independent methods to evaluate the diversity of fungi in one of the largest freshwater systems on Earth, the North American Laurentian Great Lakes. This study presents the first comprehensive survey of fungi from sediment from Lake Michigan and Lake Superior, resulting in 465 fungal taxa with only 7% of sequence overlap between these two methods. Additionally, culture-independent analyses of the ITS1 and ITS2 regions revealed 49% and 72%, respectively, of the OTUs did not match a described fungal taxonomic group below kingdom Fungi. The low level of sequence overlap between methods and high percentage of fungal taxa that can only be classified at the kingdom level suggests an immense amount of fungal diversity remains to be studied in these aquatic fungal communities.
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Affiliation(s)
- Hannah E. Wahl
- Department of Plant Biology, University of Illinois, 265 Morrill Hall, 505 South Goodwin Avenue, Urbana, IL 61801, USA
- Illinois Natural History Survey, University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA
| | - Daniel B. Raudabaugh
- Department of Plant Biology, University of Illinois, 265 Morrill Hall, 505 South Goodwin Avenue, Urbana, IL 61801, USA
- Illinois Natural History Survey, University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA
| | - Elizabeth M. Bach
- Illinois Natural History Survey, University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA
- Department of Biology, Colorado State University, 1878 Campus Delivery, Fort Collins, CO 80523, USA
| | - Tiffany S. Bone
- Illinois Natural History Survey, University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA
| | - Mark R. Luttenton
- Biology Department and Annis Water Resources Institute, Grand Valley State University, 1 Campus Drive, Allendale, MI 49401, USA
| | - Robert H. Cichewicz
- Natural Products Discovery Group, Department of Chemistry and Biochemistry, Stephenson Life Sciences Research Center, 101 Stephenson Parkway, Room 1000, University of Oklahoma, Norman, OK 73019-5251, USA
| | - Andrew N. Miller
- Illinois Natural History Survey, University of Illinois, 1816 South Oak Street, Champaign, IL 61820, USA
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