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Gokhman VE, Kuznetsova VG. Structure and Evolution of Ribosomal Genes of Insect Chromosomes. INSECTS 2024; 15:593. [PMID: 39194798 DOI: 10.3390/insects15080593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Revised: 07/25/2024] [Accepted: 08/02/2024] [Indexed: 08/29/2024]
Abstract
Currently, clusters of 45S and 5S ribosomal DNA (rDNA) have been studied in about 1000 and 100 species of the class Insecta, respectively. Although the number of insect species with known 45S rDNA clusters (also referred to as nucleolus-organizing regions, or NORs) constitutes less than 0.1 percent of the described members of this enormous group, certain conclusions can already be drawn. Since haploid karyotypes with single 45S and 5S rDNA clusters predominate in both basal and derived insect groups, this character state is apparently ancestral for the class Insecta in general. Nevertheless, the number, chromosomal location, and other characteristics of both 45S and 5S rDNA sites substantially vary across different species, and sometimes even within the same species. There are several main factors and molecular mechanisms that either maintain these parameters or alter them on the short-term and/or long-term scale. Chromosome structure (i.e., monocentric vs. holokinetic chromosomes), excessive numbers of rRNA gene copies per cluster, interactions with transposable elements, pseudogenization, and meiotic recombination are perhaps the most important among them.
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Affiliation(s)
| | - Valentina G Kuznetsova
- Department of Karyosystematics, Zoological Institute, Russian Academy of Sciences, St. Petersburg 199034, Russia
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Teixeira GA, de Aguiar HJAC, Petitclerc F, Orivel J, Lopes DM, Barros LAC. Evolutionary insights into the genomic organization of major ribosomal DNA in ant chromosomes. INSECT MOLECULAR BIOLOGY 2021; 30:340-354. [PMID: 33586259 DOI: 10.1111/imb.12699] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Revised: 01/28/2021] [Accepted: 02/08/2021] [Indexed: 06/12/2023]
Abstract
The major rDNA genes are composed of tandem repeats and are part of the nucleolus organizing regions (NORs). They are highly conserved and therefore useful in understanding the evolutionary patterns of chromosomal locations. The evolutionary dynamics of the karyotype may affect the organization of rDNA genes within chromosomes. In this study, we physically mapped 18S rDNA genes in 13 Neotropical ant species from four subfamilies using fluorescence in situ hybridization. Furthermore, a survey of published rDNA cytogenetic data for 50 additional species was performed, which allowed us to detect the evolutionary patterns of these genes in ant chromosomes. Species from the Neotropical, Palearctic, and Australian regions, comprising a total of 63 species from 19 genera within six subfamilies, were analysed. Most of the species (48 out of 63) had rDNA genes restricted to a single chromosome pair in their intrachromosomal regions. The position of rDNA genes within the chromosomes appears to hinder their dispersal throughout the genome, as translocations and ectopic recombination are uncommon in intrachromosomal regions because they can generate meiotic abnormalities. Therefore, rDNA genes restricted to a single chromosome pair seem to be a plesiomorphic feature in ants, while multiple rDNA sites, observed in distinct subfamilies, may have independent origins in different genera.
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Affiliation(s)
- G A Teixeira
- Programa de Pós-graduação em Biologia Celular e Estrutural, Universidade Federal de Viçosa, Viçosa, Brazil
- Laboratório de Citogenética de Insetos, Departamento de Biologia Geral, Universidade Federal de Viçosa, Viçosa, Brazil
| | - H J A C de Aguiar
- Universidade Federal do Amapá, Campus Binacional, BR 156, n° 3051, Bairro Universidade, Oiapoque, 68980-000, Brazil
| | - F Petitclerc
- CNRS, UMR EcoFoG, AgroParisTech, CIRAD, INRA, Université de Guyane, Université des Antilles, Campus Agronomique, Kourou, France
| | - J Orivel
- CNRS, UMR EcoFoG, AgroParisTech, CIRAD, INRA, Université de Guyane, Université des Antilles, Campus Agronomique, Kourou, France
| | - D M Lopes
- Laboratório de Citogenética de Insetos, Departamento de Biologia Geral, Universidade Federal de Viçosa, Viçosa, Brazil
| | - L A C Barros
- Universidade Federal do Amapá, Campus Binacional, BR 156, n° 3051, Bairro Universidade, Oiapoque, 68980-000, Brazil
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Teixeira GA, Barros LAC, Lopes DM, de Aguiar HJAC. Cytogenetic variability in four species of Gnamptogenys Roger, 1863 (Formicidae: Ectatomminae) showing chromosomal polymorphisms, species complex, and cryptic species. PROTOPLASMA 2020; 257:549-560. [PMID: 31813009 DOI: 10.1007/s00709-019-01451-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2019] [Accepted: 10/21/2019] [Indexed: 06/10/2023]
Abstract
Gnamptogenys includes 138 described species that are widely distributed, with high diversity, in the Neotropics. Some Neotropical species have taxonomic issues, as is the case with Gnamptogenys striatula, for which morphological variations have been observed between different populations. For the ant species with taxonomic issues, classical and molecular cytogenetic studies have assisted in the resolution of these issues. Cytogenetic studies of Gnamptogenys are scarce and have only been reported for 14 taxa. These reports have rarely presented chromosomal morphology. Considering the importance of the taxonomic revision of some species, such as G. striatula, the present study cytogenetically characterized four species of Gnamptogenys: G. striatula, G. moelleri, G. regularis, and G. triangularis, discussing their phylogenetic and biogeographic characteristics. The number of chromosomes ranged from 2n = 26 to 2n = 44, with distinct karyotypes at both species and population levels. All four species presented a pair of 18S rDNA gene markers that coincided with GC-rich regions. In the case of G. striatula from the Atlantic rainforest, a chromosomal polymorphism was observed, with chromosomal translocations being the likely origin of this polymorphism. Two populations of G. striatula showed karyotype differences, thus corroborating previous morphological data indicating the existence of a species complex in this taxon. In addition, G. regularis showed a polymorphism involving a chromosome pair bearing ribosomal genes, possibly caused by unequal crossing-over. Although G. moelleri has a well-defined taxonomy, a population from the eastern Amazon rainforest presented a divergent karyotype from the Atlantic rainforest populations, suggesting the existence of a cryptic species in this taxon.
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Affiliation(s)
- Gisele Amaro Teixeira
- Programa de Pós-graduação em Genética e Melhoramento, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
- Laboratório de Citogenética de Insetos, Departamento de Biologia Geral, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
| | | | - Denilce Meneses Lopes
- Laboratório de Citogenética de Insetos, Departamento de Biologia Geral, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
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Micolino R, Cristiano MP, Travenzoli NM, Lopes DM, Cardoso DC. Chromosomal dynamics in space and time: evolutionary history of Mycetophylax ants across past climatic changes in the Brazilian Atlantic coast. Sci Rep 2019; 9:18800. [PMID: 31827151 PMCID: PMC6906305 DOI: 10.1038/s41598-019-55135-5] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Accepted: 11/01/2019] [Indexed: 12/14/2022] Open
Abstract
Fungus-farming ants of the genus Mycetophylax exhibit intra and interspecific chromosome variability, which makes them suitable for testing hypotheses about possible chromosomal rearrangements that endure lineage diversification. We combined cytogenetic and molecular data from Mycetophylax populations from coastal environments to trace the evolutionary history of the clade in light of chromosomal changes under a historical and geographic context. Our cytogenetic analyses revealed chromosomal differences within and among species. M. morschi exhibited three distinct karyotypes and considerable variability in the localization of 45S rDNA clusters. The molecular phylogeny was congruent with our cytogenetic findings. Biogeographical and divergence time dating analyses estimated that the most recent common ancestor of Mycetophylax would have originated at about 30 Ma in an area including the Amazon and Southern Grasslands, and several dispersion and vicariance events may have occurred before the colonization of the Brazilian Atlantic coast. Diversification of the psammophilous Mycetophylax first took place in the Middle Miocene (ca. 18-10 Ma) in the South Atlantic coast, while "M. morschi" lineages diversified during the Pliocene-Pleistocene transition (ca. 3-2 Ma) through founder-event dispersal for the Northern coastal regions. Psammophilous Mycetophylax diversification fits into the major global climatic events that have had a direct impact on the changes in sea level as well as deep ecological impact throughout South America. We assume therefore that putative chromosomal rearrangements correlated with increased ecological stress during the past climatic transitions could have intensified and/or accompanied the divergence of the psammophilous Mycetophylax. We further reiterate that "M. morschi" comprises a complex of at least three well-defined lineages, and we emphasize the role of this integrative approach for the identification and delimitation of evolutionary lineages.
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Affiliation(s)
- Ricardo Micolino
- Departamento de Genética, Universidade Federal do Paraná (UFPR), Curitiba, PR, Brazil
- Departamento de Biodiversidade, Evolução e Meio Ambiente, Universidade Federal de Ouro Preto (UFOP), Ouro Preto, MG, Brazil
| | - Maykon Passos Cristiano
- Departamento de Biodiversidade, Evolução e Meio Ambiente, Universidade Federal de Ouro Preto (UFOP), Ouro Preto, MG, Brazil
| | | | - Denilce Meneses Lopes
- Departamento de Biologial Geral, Universidade Federal de Viçosa (UFV), Viçosa, MG, Brazil
| | - Danon Clemes Cardoso
- Departamento de Genética, Universidade Federal do Paraná (UFPR), Curitiba, PR, Brazil.
- Departamento de Biodiversidade, Evolução e Meio Ambiente, Universidade Federal de Ouro Preto (UFOP), Ouro Preto, MG, Brazil.
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Comparative physical mapping of 18S rDNA in the karyotypes of six leafcutter ant species of the genera Atta and Acromyrmex (Formicidae: Myrmicinae). Genetica 2017. [DOI: 10.1007/s10709-017-9970-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Barros LAC, de Aguiar HJAC, Mariano CDSF, Andrade-Souza V, Costa MA, Delabie JHC, Pompolo SDG. Cytogenetic data on six leafcutter ants of the genus Acromyrmex Mayr, 1865 (Hymenoptera, Formicidae, Myrmicinae): insights into chromosome evolution and taxonomic implications. COMPARATIVE CYTOGENETICS 2016; 10:229-43. [PMID: 27551345 PMCID: PMC4977799 DOI: 10.3897/compcytogen.v10i2.7612] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2016] [Accepted: 03/23/2016] [Indexed: 05/24/2023]
Abstract
Cytogenetic data for the genus Acromyrmex Mayr, 1865 are available, to date, for a few species from Brazil and Uruguay, which have uniform chromosome numbers (2n = 38). The recent cytogenetic data of Acromyrmex striatus (Roger, 1863), including its banding patterns, showed a distinct karyotype (2n = 22), similar to earlier studied Atta Fabricius, 1804 species. Karyological data are still scarce for the leafcutter ants and many gaps are still present for a proper understanding of this group. Therefore, this study aimed at increasing cytogenetic knowledge of the genus through the characterization of other six species: Acromyrmex balzani (Emery, 1890), Acromyrmex coronatus Fabricius, 1804, Acromyrmex disciger (Mayr, 1887), Acromyrmex echinatior (Forel, 1899), Acromyrmex niger (Smith, 1858) and Acromyrmex rugosus (Smith, 1858), all of which were collected in Minas Gerais - Brazil, except for Acromyrmex echinatior which was collected in Barro Colorado - Panama. The number and morphology of the chromosomes were studied and the following banding techniques were applied: C-banding, fluorochromes CMA3 and DAPI, as well as the detection of 45S rDNA using FISH technique. All the six species had the same chromosome number observed for already studied species, i.e. 2n = 38. Acromyrmex balzani had a different karyotype compared with other species mainly due to the first metacentric pair. The heterochromatin distribution also showed interspecific variation. Nevertheless, all the studied species had a pair of bands in the short arm of the first subtelocentric pair. The fluorochrome CMA3 visualized bands in the short arm of the first subtelocentric pair for all the six species, while Acromyrmex rugosus and Acromyrmex niger also demonstrated in the other chromosomes. The AT-rich regions with differential staining using DAPI were not observed. 45S ribosomal genes were identified by FISH in the short arm of the first subtelocentric pair in Acromyrmex coronatus, Acromyrmex disciger and Acromyrmex niger. The uniform chromosome number in the genus Acromyrmex (2n = 38) suggests that Acromyrmex striatus (2n = 22) should be transferred to a new genus. Other aspects of the chromosome evolution in ants are also discussed.
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Affiliation(s)
- Luísa Antônia Campos Barros
- Laboratório de Citogenética de Insetos, Departamento de Biologia Geral, Universidade Federal de Viçosa; Viçosa - MG, 36570-000, Brazil
- Universidade Federal do Amapá; Campus Binacional, Oiapoque - AP, 68980-000, Brazil
| | - Hilton Jeferson Alves Cardoso de Aguiar
- Laboratório de Citogenética de Insetos, Departamento de Biologia Geral, Universidade Federal de Viçosa; Viçosa - MG, 36570-000, Brazil
- Universidade Federal do Amapá; Campus Binacional, Oiapoque - AP, 68980-000, Brazil
| | - Cléa dos Santos Ferreira Mariano
- Laboratório de Mirmecologia, CEPEC/CEPLAC; Itabuna - BA, CP 7, 45600-000, Brazil
- Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz; Ilhéus - BA, 45650-000, Brazil
| | | | - Marco Antonio Costa
- Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz; Ilhéus - BA, 45650-000, Brazil
| | - Jacques Hubert Charles Delabie
- Laboratório de Mirmecologia, CEPEC/CEPLAC; Itabuna - BA, CP 7, 45600-000, Brazil
- Departamento de Ciências Agrárias e Ambientais, Universidade Estadual de Santa Cruz; Ilhéus - BA, 45650-000, Brazil
| | - Silvia das Graças Pompolo
- Laboratório de Citogenética de Insetos, Departamento de Biologia Geral, Universidade Federal de Viçosa; Viçosa - MG, 36570-000, Brazil
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Barros LAC, Aguiar HJACD, Teixeira GA, Mariano CDSF, Teixeira MDC, Delabie JHC, Pompolo SDG. Cytogenetic data on the threatened leafcutter ant Atta robusta Borgmeier, 1939 (Formicidae: Myrmicinae: Attini). C R Biol 2015; 338:660-5. [DOI: 10.1016/j.crvi.2015.07.006] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2015] [Revised: 06/30/2015] [Accepted: 07/02/2015] [Indexed: 11/17/2022]
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