Frugivory and seed dispersal by tapirs: an insight on their ecological role

Species Distribution Model for the Asian Tapir and Vegetation Characteristics of Batang Gadis National Park, North Sumatra, Indonesia

The Asian tapir is a primitive mammal whose habitat is heavily fragmented due to human activities. Studies on the Asian tapirs in Sumatra are very few, thereby basic information for developing tapir conservation programmes is limited. This study aimed to develop the species distribution model to map the potential distribution of tapirs in Batang Gadis National Park (BGNP), investigate the characteristic of tapir habitat, and identify tapir feed plants around BGNP. The model was developed using the Maximum Entropy (Maxent) approach, based on the existing information on tapir occurrence in BGNP and environmental variables. Vegetation characteristics in different land cover (primary forests, secondary forests, and open fields) were investigated using the strip transect method. This study found that zonal classification, temperature and precipitation have the greatest percentage contribution to the model. The model estimated that around 24.45% of BGNP areas are suitable for tapir habitat, and tapirs distribute near community gardens. Our results also showed that plant diversity at study sites was categorised as moderate-high. About 23 plant species dominated by the Moraceae family were identified as feed plants for tapirs. In developing tapir conservation programmes, BGNP management needs to consider tapir distribution that is closed to community gardens. We propose BGNP to enrich feed plants in open fields of the wilderness and traditional zones; reduce the canopy cover in the wilderness and utilisation zones to stimulate the growth of feed plants; facilitate local people to live harmoniously with tapirs; involve local communities in tapir conservation programmes; encourage local communities to plant non-palatable crops for tapirs; and provide a compensation scheme.

Phenotypic divergence of traits that mediate antagonistic and mutualistic interactions between island and continental populations of the tropical plant, Tribulus cistoides (Zygophyllaceae)

Island systems have long served as a model for evolutionary processes due to their unique species interactions. Many studies of the evolution of species interactions on islands have focused on endemic taxa. Fewer studies have focused on how antagonistic and mutualistic interactions shape the phenotypic divergence of widespread nonendemic species living on islands. We used the widespread plant Tribulus cistoides (Zygophyllaceae) to study phenotypic divergence in traits that mediate antagonistic interactions with vertebrate granivores (birds) and mutualistic interactions with pollinators, including how this is explained by bioclimatic variables. We used both herbarium specimens and field-collected samples to compare phenotypic divergence between continental and island populations. Fruits from island populations were larger than on continents, but the presence of lower spines on mericarps was less frequent on islands. The presence of spines was largely explained by environmental variation among islands. Petal length was on average 9% smaller on island than continental populations, an effect that was especially accentuated on the Galápagos Islands. Our results show that Tribulus cistoides exhibits phenotypic divergence between island and continental habitats for antagonistic traits (seed defense) and mutualistic traits (floral traits). Furthermore, the evolution of phenotypic traits that mediate antagonistic and mutualistic interactions partially depended on the abiotic characteristics of specific islands. This study shows the potential of using a combination of herbarium and field samples for comparative studies on a globally distributed species to study phenotypic divergence on island habitats.

Sagittal crest morphology decoupled from relative bite performance in Pleistocene tapirs (Perissodactyla: Tapiridae)

Bite force is often associated with specific morphological features, such as sagittal crests. The presence of a pronounced sagittal crest in some tapirs (Perissodactyla: Tapiridae) was recently shown to be negatively correlated with hard-object feeding, in contrast with similar cranial structures in carnivorans. The aim of this study was to investigate bite forces and sagittal crest heights across a wide range of modern and extinct tapirs and apply a comparative investigation to establish whether these features are correlated across a broad phylogenetic scope. We examined a sample of 71 specimens representing 15 tapir species (5 extant, 10 extinct) using the dry-skull method, linear measurements of cranial features, phylogenetic reconstruction, and comparative analyses. Tapirs were found to exhibit variation in bite force and sagittal crest height across their phylogeny and between different biogeographical realms, with high-crested morphologies occurring mostly in Neotropical species. The highest bite forces within tapirs appear to be driven by estimates for the masseter-pterygoid muscle complex, rather than predicted forces for the temporalis muscle. Our results demonstrate that relative sagittal crest height is poorly correlated with relative cranial bite force, suggesting high force application is not a driver for pronounced sagittal crests in this sample. The divergent biomechanical capabilities of different contemporaneous tapirids may have allowed multiple species to occupy overlapping territories and partition resources to avoid excess competition. Bite forces in tapirs peak in Pleistocene species, independent of body size, suggesting possible dietary shifts as a potential result of climatic changes during this epoch.

Bearing Fruit: Miocene Apes and Rosaceous Fruit Evolution

Extinct megafaunal mammals in the Americas are often linked to seed-dispersal mutualisms with large-fruiting tree species, but large-fruiting species in Europe and Asia have received far less attention. Several species of arboreal Maloideae (apples and pears) and Prunoideae (plums and peaches) evolved large fruits starting around nine million years ago, primarily in Eurasia. As evolutionary adaptations for seed dispersal by animals, the size, high sugar content, and bright colorful visual displays of ripeness suggest that mutualism with megafaunal mammals facilitated the evolutionary change. There has been little discussion as to which animals were likely candidate(s) on the late Miocene landscape of Eurasia. We argue that several possible dispersers could have consumed the large fruits, with endozoochoric dispersal usually relying on guilds of species. During the Pleistocene and Holocene, the dispersal guild likely included ursids, equids, and elephantids. During the late Miocene, large primates were likely also among the members of this guild, and the potential of a long-held mutualism between the ape and apple clades merits further discussion. If primates were a driving factor in the evolution of this large-fruit seed-dispersal system, it would represent an example of seed-dispersal-based mutualism with hominids millions of years prior to crop domestication or the development of cultural practices, such as farming.

Body mass determines the role of mammal species in a frugivore-large fruit interaction network in a Neotropical savanna

Frugivorous mammals play an important role in maintaining biodiversity and are considered one of the main dispersers of large seeds. In this study, we describe the structure of the interaction network between non-flying mammals and seven plant species with large fruits in a megadiverse savanna-forest mosaic in the Brazilian Cerrado. We also evaluated the individual contribution of each species to the organization of the interaction network and tested whether body mass determined the mammals’ role in the network. To record frugivory events of mammals with arboreal and terrestrial habits, camera traps were installed at ground and canopy levels. We identified 18 mammal species interacting with seven plant species in 515 frugivory events. Our observations highlight an interaction network with a modular and non-nested topology and the important role of large mammals in the network structure, which reflects the importance of the group in potential seed dispersal. The extinction of large frugivorous mammals can cause several damages to ecosystem services in the Brazilian Cerrado through changes in network structure, especially threatening the survival of plant species with large fruits.

Spatial and Temporal Adaptations of Lowland Tapirs (Tapirus terrestris) to Environmental and Anthropogenic Impacts

The Pantanal is one of the most conserved wetland ecosystems in Brazil and a hotspot for biodiversity. Over the last decades intensification of human activities has become a major threat to the stability of the unique landscape. To establish effective conservation actions, it is essential to understand how species respond to anthropogenic and environmental regional factors. Here, data from two multiannual camera trap studies, one in the northern Pantanal and one in the southern Pantanal, were used to investigate the effects of habitat characteristics, seasons, and human interactions on the spatial and temporal patterns of lowland tapirs (Tapirus terrestris). Between 2010 and 2017, camera traps were repeatedly placed in consistent grids covering protected areas and areas with cattle-ranching and tourism. Data were analyzed using generalized linear mixed models and circular statistics. Activity patterns were similar and predominantly nocturnal in both areas, but tapirs indicated avoidance toward settlements and cattle and indicated habitat preferences only in the northern study area with less anthropogenic activities. The present study suggests that both environmental and anthropogenic factors can affect the species' spatial and temporal behavior, but tapirs show varying responses across regions and gradients of disturbance. The results indicate that adapting avoidance strategies might be more likely and effective in areas with low human pressure and sufficient protected areas as alternatives.

Frugivory and Seed Dispersal by Carnivorans

Seed dispersal is critical to the ecological performance of sexually reproducing plant species and the communities that they form. The Mammalian order Carnivora provide valuable and effective seed dispersal services but tend to be overlooked in much of the seed dispersal literature. Here we review the literature on the role of Carnivorans in seed dispersal, with a literature search in the Scopus reference database. Overall, we found that Carnivorans are prolific seed dispersers. Carnivorans’ diverse and plastic diets allow them to consume large volumes of over a hundred families of fruit and disperse large quantities of seeds across landscapes. Gut passage by these taxa generally has a neutral effect on seed viability. While the overall effect of Carnivorans on seed dispersal quality is complex, Carnivorans likely increase long-distance dispersal services that may aid the ability of some plant species to persist in the face of climate change.

The mutualism-antagonism continuum in Neotropical palm-frugivore interactions: from interaction outcomes to ecosystem dynamics

Frugivory, that is feeding on fruits, pulp or seeds by animals, is usually considered a mutualism when interactions involve seed dispersal, and an antagonism when it results in the predation and destruction of seeds. Nevertheless, most frugivory interactions involve both benefits and disadvantages for plants, and the net interaction outcomes thus tend to vary along a continuum from mutualism to antagonism. Quantifying outcome variation is challenging and the ecological contribution of frugivorous animals to plant demography thus remains little explored. This is particularly true for interactions in which animals do not ingest entire fruits, that is in seed‐eating and pulp‐eating. Here, we provide a comprehensive review of Neotropical palm–frugivore interactions, with a focus on how frugivore consumption behaviour (i.e. digestive processing, fruit‐handling ability and caching behaviour) and feeding types (fruit‐eating, pulp‐eating and seed‐eating) influence interaction outcomes at different demographic stages of palms. We compiled a total of 1043 species‐level palm–frugivore interaction records that explicitly captured information on which parts of palm fruits are eaten by animals. These records showed consumption of fruits of 106 Neotropical palm species by 273 vertebrate species, especially birds (50%) and mammals (45%), but also fish (3%) and reptiles (2%). Fruit‐eating involved all four taxonomic vertebrate classes whereas seed‐eating and pulp‐eating were only recorded among birds and mammals. Most fruit‐eating interactions (77%) resulted in positive interaction outcomes for plants (e.g. gut‐passed seeds are viable or seeds are successfully dispersed), regardless of the digestive processing type of vertebrate consumers (seed defecation versus regurgitation). The majority of pulp‐eating interactions (91%) also resulted in positive interaction outcomes, for instance via pulp removal that promoted seed germination or via dispersal of intact palm seeds by external transport, especially if animals have a good fruit‐handling ability (e.g. primates, and some parrots). By contrast, seed‐eating interactions mostly resulted in dual outcomes (60%), where interactions had both negative effects on seed survival and positive outcomes through seed caching and external (non‐digestive) seed dispersal. A detailed synthesis of available field studies with qualitative and quantitative information provided evidence that 12 families and 27 species of mammals and birds are predominantly on the mutualistic side of the continuum whereas five mammalian families, six mammal and one reptile species are on the antagonistic side. The synthesis also revealed that most species can act as partial mutualists, even if they are typically considered antagonists. Our review demonstrates how different consumption behaviours and feeding types of vertebrate fruit consumers can influence seed dispersal and regeneration of palms, and thus ultimately affect the structure and functioning of tropical ecosystems. Variation in feeding types of animal consumers will influence ecosystem dynamics via effects on plant population dynamics and differences in long‐distance seed dispersal, and may subsequently affect ecosystem functions such as carbon storage. The quantification of intra‐ and inter‐specific variation in outcomes of plant–frugivore interactions – and their positive and negative effects on the seed‐to‐seedling transition of animal‐dispersed plants – should be a key research focus to understand better the mutualism–antagonism continuum and its importance for ecosystem dynamics.

Tapirs in trouble: estimating Baird's tapir densities in the Sierra Madre de Chiapas, Mexico

Spatial capture–recapture models have been widely used to estimate densities of species where individuals can be uniquely identified, but alternatives have been developed for estimation of densities for unmarked populations. In this study we used camera-trap records from 2018 to estimate densities of a species that does not always have individually identifiable marks, Baird's tapir Tapirus bairdii, in the Sierra Madre de Chiapas, southern Mexico. We compared the performance of the spatial capture–recapture model with spatial mark–resight and random encounter models. The density of Baird's tapir did not differ significantly between the three models. The estimate of density was highest using the random encounter model (26/100 km2, 95% CI 12–41) and lowest using the capture–recapture model (8/100 km2, 95% CI 4–16). The estimate from the spatial mark–resight model was 10/100 km2 (95% CI 8–14), which had the lowest coefficient of variation, indicating a higher precision than with the other models. Using a second set of camera-trap data, collected in 2015–2016, we created occupancy models and extrapolated density to areas with potential occupancy of Baird's tapir, to generate a population estimate for the whole Sierra Madre de Chiapas. Our findings indicate the need to strengthen, and possibly expand, the protected areas of southern Mexico and to develop an action plan to ensure the conservation of Baird's tapir.

First Report of a Multidrug-Resistant ST58 Escherichia coli Harboring Extended-Spectrum Beta-Lactamase of the CTX-M-1 Class in a Fecal Sample of a Captive Baird's Tapir (Tapirus bairdii) in Costa Rica, Central America

Objective: This study's main objective was to analyze the antibiotic susceptibility profile of Escherichia coli isolates obtained from a fecal sample of a captive Baird's tapir (Tapirus bairdii) in Costa Rica. Materials and Methods: The fecal sample was collected inside the enclosure on March 3, 2017, right after the animal defecated. Samples were cultured on MacConkey agar plates nonsupplemented and supplemented with 2 μg/mL of cefotaxime. Bacterial identification and antibiotic susceptibility were performed with the Vitek 2 Compact System and the Kirby Bauer disk diffusion method, respectively. Polymerase chain reaction amplification was performed to detect bla_CTX-M beta-lactamase genes. Resistant isolates were subjected to whole-genome sequencing (WGS). Results: After evaluating several antibiotic classes, a multidrug-resistant E. coli strain with extended-spectrum beta-lactamase phenotype was isolated. Resistance to cefotaxime, cefepime, ampicillin, ampicillin/sulbactam, and tetracycline was detected. WGS analysis showed the presence of bla_CTX-M-1, bla_TEM-1B, and tet(B) genes. The presence of IncN plasmids and Col156 was also detected. Conclusion: Our findings are according with the notion that animals' high density enhances the spread of resistant determinants in a captive environment in a limited space, where the likelihood of direct or indirect contact with other animals and humans is more frequent.

Sowing forests: a synthesis of seed dispersal and predation by agoutis and their influence on plant communities

Granivorous rodents have been traditionally regarded as antagonistic seed predators. Agoutis (Dasyprocta spp.), however, have also been recognized as mutualistic dispersers of plants because of their role as scatter-hoarders of seeds, especially for large-seeded species. A closer look shows that such definitions are too simplistic for these Neotropical animals because agoutis can influence plant communities not only through seed dispersal of large seeds but also through predation of small seeds and seedlings, evidencing their dual role. Herein, we summarize the literature on plant-agouti interactions, decompose agouti seed dispersal into its quantitative and qualitative components, and discuss how environmental factors and plant traits determine whether these interactions result in mutualisms or antagonisms. We also look at the role of agoutis in a community context, assessing their effectiveness as substitutes for extinct megafaunal frugivores and comparing their ecological functions to those of other extant dispersers of large seeds. We also discuss how our conclusions can be extended to the single other genus in the Dasyproctidae family (Myoprocta). Finally, we examine agoutis' contribution to carbon stocks and summarize current conservation threats and efforts. We recorded 164 interactions between agoutis and plants, which were widespread across the plant phylogeny, confirming that agoutis are generalist frugivores. Seed mass was a main factor determining seed hoarding probability of plant species and agoutis were found to disperse larger seeds than other large-bodied frugivores. Agoutis positively contributed to carbon storage by preying upon seeds of plants with lower carbon biomass and by dispersing species with higher biomass. This synthesis of plant-agouti interactions shows that ecological services provided by agoutis to plant populations and communities go beyond seed dispersal and predation, and we identify still unanswered questions. We hope to emphasise the importance of agoutis in Neotropical forests.

CRISP protein expression in semen of the endangered Malayan tapir (Tapirus indicus)

The Malayan tapir is a large endangered herbivore native to South-east Asia with fewer than 2500 animals remaining in the wild. Although a small number of animals (183 animals held by 60 institutions) are managed in zoos and breeding centres, there is limited information on the fundamental reproductive biology of this species. The purpose of this present study was to evaluate the associations of reproductive protein biomarkers (CRISP2 and CRISP3) in the seminal plasma and spermatozoa with reproductive characteristics in male Malayan tapirs. Ejaculates were collected from zoo-housed animals by electroejaculation and assessed for sperm motility and quality traits. Seminal plasma and sperm pellets were analysed for CRISP protein expression by immunoblotting. The reproductive tract of a single animal was also analysed for CRISP2 and CRISP3 protein expression and localization by immunohistochemistry. Our results showed that both CRISP2 and CRISP3 are expressed in the seminal plasma and spermatozoa derived from Malayan tapirs. CRISP expression was positively correlated with semen quality, especially ejaculate volume, number of motile sperm, and acrosomal integrity. In addition, CRISP2 and CRISP3 protein expression were slightly high in males that had recently sired an offspring. The results suggest that CRISP proteins may serve as biomarkers for ejaculate quality and fertility in male Malayan tapirs. These findings may have significant implications for planning future breeding and re-introduction efforts for this species.

Impact of ecotourism on abundance, diversity and activity patterns of medium-large terrestrial mammals at Brownsberg Nature Park, Suriname

The impacts of ecotourism on biodiversity are poorly understood and the outcome of this type of research is often contradictory. On the one hand ecotourism could impact the occurrence, survival or behavior of species, on the other hand ecotourism is often mentioned as providing a "human shield" by deterring negative practices like gold mining, logging and hunting. Brownsberg Nature Park is easily the most visited protected area of Suriname, with a high number of ecotourists visiting from abroad. A four-year study on the impact of ecotourism on medium-large terrestrial mammals was carried out between 2013 and 2016 using 16 camera trap stations. The area has a clear gradient of tourism pressure, with the pressure decreasing further away from the lodging facilities. Evidently, the impacts of human presence on the mammal communities were more significant in the busiest areas. Most species avoided areas with many hikers or switched to a more nocturnal activity pattern. In these areas the impact was not reflected in species numbers, however it was causing a significant decrease in the diversity of mammals. On the other hand, vehicles had little impact on species avoidance or diversity, but did increase nocturnality, even more than hikers. A few species seemed to be "attracted" by hikers and/or traffic. Giant armadillos (Priodontes maximus) and spotted pacas (Cuniculus paca) used the pools in the road created by traffic. Ocelots (Leopardus pardalis), margays (Leopardus wiedii) and red-rumped agoutis (Dasyprocta leporina) seemed to favor human disturbance probably because of predator release. Some of the most impacted species were the jaguar (Panthera onca), puma (Puma concolor) and lowland tapir (Tapirus terrestris), all three species with significant contribution to ecosystem balance. Management measures should focus on lowering the number of hikers in popular places and limiting the number of vehicles in recreational areas.

Tapirus bairdii-Associated Fecal Microbiome from a Critical Conservation Area: Calakmul, México

Baird's tapir (Tapirus bairdii) is the largest native terrestrial mammal in the Neotropics, which is endangered primarily as a consequence of habitat loss and overhunting. Baird's tapir is predominantly nocturnal and exists at low densities which complicates field studies. Baird's tapir is a large-bodied herbivore that plays a key role in maintaining healthy tropical forests through seed dispersal in its feces. Studies of gut microbiome are essential and valuable to assess the health status of the host and the interaction with the environment. In this study, we collected fresh fecal samples of T. bairdii to analyze its gut microbiome during the rainy and dry seasons in the Calakmul region, which is a critical rainforest conservation area in Mexico. The results of a high-throughput 16S rDNA gene sequencing approach suggest that the fecal microbiome of Baird's tapir has no significant differences in composition among seasons. The most common phyla were Firmicutes, Bacteroidetes, Proteobacteria, Kiritimatiellaeota, and Spirochaetes. This study suggests that the stability of the fecal microbiome is related to similar feeding strategies throughout the year, and emphasizes the value of tapir in seed dispersal (and associated microbes) to the well-conserved forests of the Greater Calakmul region as biodiversity hotspots for conservation.

Exaptation Traits for Megafaunal Mutualisms as a Factor in Plant Domestication

Megafaunal extinctions are recurring events that cause evolutionary ripples, as cascades of secondary extinctions and shifting selective pressures reshape ecosystems. Megafaunal browsers and grazers are major ecosystem engineers, they: keep woody vegetation suppressed; are nitrogen cyclers; and serve as seed dispersers. Most angiosperms possess sets of physiological traits that allow for the fixation of mutualisms with megafauna; some of these traits appear to serve as exaptation (preadaptation) features for farming. As an easily recognized example, fleshy fruits are, an exaptation to agriculture, as they evolved to recruit a non-human disperser. We hypothesize that the traits of rapid annual growth, self-compatibility, heavy investment in reproduction, high plasticity (wide reaction norms), and rapid evolvability were part of an adaptive syndrome for megafaunal seed dispersal. We review the evolutionary importance that megafauna had for crop and weed progenitors and discuss possible ramifications of their extinction on: (1) seed dispersal; (2) population dynamics; and (3) habitat loss. Humans replaced some of the ecological services that had been lost as a result of late Quaternary extinctions and drove rapid evolutionary change resulting in domestication.

Microstructure of the Surface of the Tongue and Histochemical Study of the Lingual Glands of the Lowland Tapir (Tapirus terrestris Linnaeus, 1758) (Perissodactyla: Tapiridae)

Simple Summary

This is a detailed study of the surface morphology of the tongue and the lingual glands of the lowland tapir (Tapirus terrestris), which expands the understanding of the adaptation of this species to habitats. The histological and ultrastructural analysis of the lingual papillae and lingual glands revealed the presence of two types of mechanical papillae, namely the filiform and conical papillae, while papillae with taste buds (including the fungiform papillae, vallate papillae, and foliate papillae) formed the second, less numerous group. The filiform papillae differed from those of Equidae or Rhinocerotidae. The presence of nine vallate papillae, localized in groups of two surrounded by a ring, or individually, was unique for the examined female tapir. In addition, the vallate papillae contained irregular pseudopapillae on their surface. The foliate papillae contained several sulci between each folia. The presence of sparse taste buds in the side wall of the vallate papillae and foliate papillae is unique for the tapir. Compared to other Perissodactyla, the number of taste buds in the tapir is limited, although the features of its tongue surface make it possible to distinguish this species from representatives of Equidae or Rhinocerotidae.

Abstract

Although the anatomy of the gastrointestinal tract has been characterized in the lowland tapir (Tapirus terrestris), the exact anatomy of its tongue has not been studied. Samples of the lingual papillae and lingual glands were collected from the tongue of an adult female lowland tapir. The microscopic analysis of the structure of the lingual papillae and the histochemical analysis of the secretion of the lingual glands were analyzed. The tongue of the tapir is divided into the apex, body with a distinct lingual prominence, and the root. Its ventral surface is smooth. The most numerous of the mechanical papillae were the filiform papillae, while numerous conical papillae with a sharp apex or more rounded papillae were present in the root of the tongue. There were also nine vallate papillae and pair of foliate papillae. The foliate papillae contained several folds parted by 12–14 grooves. The mucous secretion produced by the lingual glands was more obvious than the serous secretion. The features of the dorsal surface of the tongue as well as the shape and number of the lingual papillae on the surface of the tongue of the examined female tapir differ compared to Equidae or Rhinocerotidae, the other two representatives of Perissodactyla. However, further study is necessary for the synapomorpy of the tapir’s tongue.

First documented predation of a Baird’s tapir by a jaguar in the Calakmul region, Mexico

To date, records of predation on Baird’s tapir (Tapirus bairdii) by jaguars (Panthera onca) were anecdotal and did not allow for differentiation regarding whether the animal had been preyed upon or scavenged. Here, we present the first documented event of predation on a Baird’s tapir by a jaguar in the Calakmul region, Campeche, Mexico. In August 2017, we observed a jaguar eating a juvenile female Baird’s tapir; when we analysed the skull, we observed the characteristic “lethal bite” with which jaguars kill their prey by piercing the temporal and parietal bones with their canine teeth. Jaguars select to attack tapirs when they are most vulnerable (young or sick). Records of these type of events are important for understanding the food webs and ecology of these iconic Neotropical species that inhabit the Mesoamerican forests.

Chewing, dental morphology and wear in tapirs (Tapirus spp.) and a comparison of free-ranging and captive specimens

Feeding practice in herbivorous mammals can impact their dental wear, due to excessive or irregular abrasion. Previous studies indicated that browsing species display more wear when kept in zoos compared to natural habitats. Comparable analyses in tapirs do not exist, as their dental anatomy and chewing kinematics are assumed to prevent the use of macroscopic wear proxies such as mesowear. We aimed at describing tapir chewing, dental anatomy and wear, to develop a system allowing comparison of free-ranging and captive specimens even in the absence of known age. Video analyses suggest that in contrast to other perissodactyls, tapirs have an orthal (and no lateral) chewing movement. Analysing cheek teeth from 74 museum specimens, we quantified dental anatomy, determined the sequence of dental wear along the tooth row, and established several morphometric measures of wear. In doing so, we showcase that tapir maxillary teeth distinctively change their morphology during wear, developing a height differential between less worn buccal and more worn lingual cusps, and that quantitative wear corresponds to the eruption sequence. We demonstrate that mesowear scoring shows a stable signal during initial wear stages but results in a rather high mesowear score compared to other browsing herbivores. Zoo specimens had lesser or equal mesowear scores as specimens from the wild; additionally, for the same level of third molar wear, premolars and other molars of zoo specimens showed similar or less wear compared specimens from the wild. While this might be due to the traditional use of non-roughage diet items in zoo tapirs, these results indicate that in contrast to the situation in other browsers, excessive tooth wear appears to be no relevant concern in ex situ tapir management.

Potential impact of mammal defaunation on the early regeneration of a large-seeded palm in the Brazilian Atlantic Forest

Defaunation, the decline in animal species and populations, is biased towards large-bodied animals that have unique roles as dispersers of large seeds. However, it is speculated that these roles may still be performed by smaller animals, such as small mammals like rodents and marsupials, that thrive in defaunated sites. We investigated if small mammals can disperse the large-seeded palm Attalea dubia. We performed the study in a well-conserved Atlantic Forest remnant in southeast Brazil that still harbours large mammals, such as tapirs. Focal observations showed that capuchin-monkeys consumed the mesocarp of the fruits and dropped the seeds beneath the plant crown thereafter. Mammals preyed on ca. 1% and removed ca. 15% of the fallen fruit/seed and deposited them up to 15 m away. Amongst them, small mammals (< 1 kg), such as the squirrel Guerlinguetus brasiliensis and non-identified nocturnal Sigmodontinae, as well as the marsupial Philander frenatus performed the bulk of interactions. Dispersal enhances recruitment, but the short distances of seed removal did not match the current spatial distribution of palm seedlings and juveniles. Recaching rates of hoarded seeds were small (2%) and unlikely to increase distances of seed dispersal achieved. Short distances of dispersal would increase plant clumpiness and negative density-dependent effects with time. Although small mammals can provide legitimate dispersal, they cannot fully replace larger frugivorous mammals and maintain long-distance seed dispersal that feeds plant metapopulation dynamics and seed gene flow.

Clarifying relationships between cranial form and function in tapirs, with implications for the dietary ecology of early hominins

Paleontologists and paleoanthropologists have long debated relationships between cranial morphology and diet in a broad diversity of organisms. While the presence of larger temporalis muscle attachment area (via the presence of sagittal crests) in carnivorans is correlated with durophagy (i.e. hard-object feeding), many primates with similar morphologies consume an array of tough and hard foods—complicating dietary inferences of early hominins. We posit that tapirs, large herbivorous mammals showing variable sagittal crest development across species, are ideal models for examining correlations between textural properties of food and sagittal crest morphology. Here, we integrate dietary data, dental microwear texture analysis, and finite element analysis to clarify the functional significance of the sagittal crest in tapirs. Most notably, pronounced sagittal crests are negatively correlated with hard-object feeding in extant, and several extinct, tapirs and can actually increase stress and strain energy. Collectively, these data suggest that musculature associated with pronounced sagittal crests—and accompanied increases in muscle volume—assists with the processing of tough food items in tapirs and may yield similar benefits in other mammals including early hominins.

Origins of the Apple: The Role of Megafaunal Mutualism in the Domestication of Malus and Rosaceous Trees

The apple (Malus domestica [Suckow] Borkh.) is one of the most economically and culturally significant fruits in the world today, and it is grown in all temperate zones. With over a thousand landraces recognized, the modern apple provides a unique case study for understanding plant evolution under human cultivation. Recent genomic and archaeobotanical studies have illuminated parts of the process of domestication in the Rosaceae family. Interestingly, these data seem to suggest that rosaceous arboreal crops did not follow the same pathway toward domestication as other domesticated, especially annual, plants. Unlike in cereal crops, tree domestication appears to have been rapid and driven by hybridization. Apple domestication also calls into question the concept of centers of domestication and human intentionality. Studies of arboreal domestication also illustrate the importance of fully understanding the seed dispersal processes in the wild progenitors when studying crop origins. Large fruits in Rosaceae evolved as a seed-dispersal adaptation recruiting megafaunal mammals of the late Miocene. Genetic studies illustrate that the increase in fruit size and changes in morphology during evolution in the wild resulted from hybridization events and were selected for by large seed dispersers. Humans over the past three millennia have fixed larger-fruiting hybrids through grafting and cloning. Ultimately, the process of evolution under human cultivation parallels the natural evolution of larger fruits in the clade as an adaptive strategy, which resulted in mutualism with large mammalian seed dispersers (disperser recruitment).

Biodiversity Observations Miner: A web application to unlock primary biodiversity data from published literature

Background

A considerable portion of primary biodiversity data is digitally locked inside published literature which is often stored as pdf files. Large-scale approaches to biodiversity science could benefit from retrieving this information and making it digitally accessible and machine-readable. Nonetheless, the amount and diversity of digitally published literature pose many challenges for knowledge discovery and retrieval. Text mining has been extensively used for data discovery tasks in large quantities of documents. However, text mining approaches for knowledge discovery and retrieval have been limited in biodiversity science compared to other disciplines.

New information

Here, we present a novel, open source text mining tool, the Biodiversity Observations Miner (BOM). This web application, written in R, allows the semi-automated discovery of punctual biodiversity observations (e.g. biotic interactions, functional or behavioural traits and natural history descriptions) associated with the scientific names present inside a corpus of scientific literature. Furthermore, BOM enable users the rapid screening of large quantities of literature based on word co-occurrences that match custom biodiversity dictionaries. This tool aims to increase the digital mobilisation of primary biodiversity data and is freely accessible via GitHub or through a web server.

Interaction between frugivorous vertebrates and two plant species of the genus Spondias

Most plant species in the Atlantic Forest invest in zoochory as a dispersal mechanism and many depend on vertebrates to fulfill that role. The sizes of fruits and seeds are limiting factors in interactions between vertebrates and plant species. For example, plants that produce fruits with large seeds are more dependent on large frugivorous vertebrates for dispersal. We used camera traps to observe the interactions between frugivorous vertebrates and two large seed-producing plants of the genus Spondias in the Tableland of the Atlantic Forest of Espírito Santo, Brazil. Between 2015 and 2016 (622 camera days), we recorded 17 species of frugivorous vertebrates potentially ingesting fruit at the studied sites. Among the species recorded, only the lowland tapir (Tapirus terrestris) was observed interacting directly with S. venulosa and S. macrocarpa. Our analysis indicates that the type of interaction depends on the body size of the vertebrate species, meaning that direct interaction with fruits of Spondias is commonly performed by medium and large vertebrates, such as spotted pacas, agoutis, and tapirs. Our study highlights the importance of these vertebrates in the forest remnants of the Atlantic Forest Tableland, such as the Linhares-Sooretama forest complex, for conservation and regeneration of plant communities.

Introduction of mammalian seed predators and the loss of an endemic flightless bird impair seed dispersal of the New Zealand tree Elaeocarpus dentatus

Understanding the mutualistic services provided by species is critical when considering both the consequences of their loss or the benefits of their reintroduction. Like many other Pacific islands, New Zealand seed dispersal networks have been changed by both significant losses of large frugivorous birds and the introduction of invasive mammals. These changes are particularly concerning when important dispersers remain unidentified. We tested the impact of frugivore declines and invasive seed predators on seed dispersal for an endemic tree, hinau Elaeocarpus dentatus, by comparing seed dispersal and predation rates on the mainland of New Zealand with offshore sanctuary islands with higher bird and lower mammal numbers. We used cameras and seed traps to measure predation and dispersal from the ground and canopy, respectively. We found that canopy fruit handling rates (an index of dispersal quantity) were poor even on island sanctuaries (only 14% of seeds captured below parent trees on islands had passed through a bird), which suggests that hinau may be adapted for ground-based dispersal by flightless birds. Ground-based dispersal of hinau was low on the New Zealand mainland compared to sanctuary islands (4% of seeds dispersed on the mainland vs. 76% dispersed on islands), due to low frugivore numbers. A flightless endemic rail (Gallirallus australis) conducted the majority of ground-based fruit removal on islands. Despite being threatened, this rail is controversial in restoration projects because of its predatory impacts on native fauna. Our study demonstrates the importance of testing which species perform important mutualistic services, rather than simply relying on logical assumptions.

Determining the numbers of a landscape architect species (Tapirus terrestris), using footprints

Background

As a landscape architect and a major seed disperser, the lowland tapir (Tapirus terrestris) is an important indicator of the ecological health of certain habitats. Therefore, reliable data regarding tapir populations are fundamental in understanding ecosystem dynamics, including those associated with the Atlantic Forest in Brazil. Currently, many population monitoring studies use invasive tagging with radio or satellite/Global Positioning System (GPS) collars. These techniques can be costly and unreliable, and the immobilization required carries physiological risks that are undesirable particularly for threatened and elusive species such as the lowland tapir.

Methods

We collected data from one of the last regions with a viable population of lowland tapir in the south-eastern Atlantic Forest, Brazil, using a new non-invasive method for identifying species, the footprint identification technique (FIT).

Results

We identified the minimum number of tapirs in the study area and, in addition, we observed that they have overlapping ranges. Four hundred and forty footprints from 46 trails collected from six locations in the study area in a landscape known to contain tapir were analyzed, and 29 individuals were identified from these footprints.

Discussion

We demonstrate a practical application of FIT for lowland tapir censusing. Our study shows that FIT is an effective method for the identification of individuals of a threatened species, even when they lack visible natural markings on their bodies. FIT offers several benefits over other methods, especially for tapir management. As a non-invasive method, it can be used to census or monitor species, giving rapid feedback to managers of protected areas.

Defaunation as a trigger for the additional loss of plant species in fragmented landscapes: considerations on the state of Espírito Santo, southeastern Brazil

Abstract Here we present a brief review on how the loss of fauna can cause a concomitant loss in plant diversity in the state of Espírito Santo, focusing on the context of current habitat loss and fragmentation and the importance of the mutualistic interactions between animals and plants. We discuss the main groups of fauna that are involved in pollination and seed dispersal, especially those that are found in the state of Espírito Santo. These ecological processes were selected due to their relevance for population dynamics and population genetics of plants. In Atlantic Forest, important pollinators include a variety of insects (especially bees), along with many species of birds and bats. Seed dispersers also include many taxonomic groups, from ants to large mammals. Each of these groups contribute in their own unique and complementary, rather than redundant, way. Habitat fragmentation causes a variety of problems for habitat integrity and the reduction of species diversity, and smaller fragments tend to support fewer species and smaller populations. As a consequence, pollinators and seed dispersers are lost or their activity is reduced, thereby reducing even further the reproductive success of the plants, leading to a vicious cycle of reduction of species diversity.

Seed dispersal by macaws shapes the landscape of an Amazonian ecosystem

Seed dispersal is one of the most studied plant-animal mutualisms. It has been proposed that the dispersal of many large-seeded plants from Neotropical forests was primarily conducted by extinct megafauna, and currently by livestock. Parrots can transport large fruits using their beaks, but have been overlooked as seed dispersers. We demonstrate that three macaws (Ara ararauna, A. glaucogularis and A. severus) are the main dispersers of the large-seeded motacú palm Attalea princeps, which is the biomass-dominant tree in the Bolivian Amazonian savannas. Macaws dispersed fruits at high rates (75-100% of fruits) to distant (up to 1200 m) perching trees, where they consumed the pulp and discarded entire seeds, contributing to forest regeneration and connectivity between distant forests islands. The spatial distribution of immature palms was positively associated to the proximity to macaws' perching trees and negatively to the proximity to cattle paths. The disperser role of livestock, presumably a substitute for extinct megafauna, had little effect due to soil compaction, trampling and herbivory. Our results underscore the importance of macaws as legitimate, primary dispersers of large-seeded plants at long distances and, specifically, their key role in shaping the landscape structure and functioning of this Amazonian biome.