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Khoroshyy P, Tenger K, Chertkova RV, Bocharova OV, Kirpichnikov MP, Borovok N, Groma GI, Dolgikh DA, Kotlyar AB, Zimányi L. Kinetics and Energetics of Intramolecular Electron Transfer in Single-Point Labeled TUPS-Cytochrome c Derivatives. Molecules 2021; 26:molecules26226976. [PMID: 34834068 PMCID: PMC8621336 DOI: 10.3390/molecules26226976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Revised: 11/13/2021] [Accepted: 11/16/2021] [Indexed: 11/16/2022] Open
Abstract
Electron transfer within and between proteins is a fundamental biological phenomenon, in which efficiency depends on several physical parameters. We have engineered a number of horse heart cytochrome c single-point mutants with cysteine substitutions at various positions of the protein surface. To these cysteines, as well as to several native lysine side chains, the photoinduced redox label 8-thiouredopyrene-1,3,6-trisulfonate (TUPS) was covalently attached. The long-lived, low potential triplet excited state of TUPS, generated with high quantum efficiency, serves as an electron donor to the oxidized heme c. The rates of the forward (from the label to the heme) and the reverse (from the reduced heme back to the oxidized label) electron transfer reactions were obtained from multichannel and single wavelength flash photolysis absorption kinetic experiments. The electronic coupling term and the reorganization energy for electron transfer in this system were estimated from temperature-dependent experiments and compared with calculated parameters using the crystal and the solution NMR structure of the protein. These results together with the observation of multiexponential kinetics strongly support earlier conclusions that the flexible arm connecting TUPS to the protein allows several shortcut routes for the electron involving through space jumps between the label and the protein surface.
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Affiliation(s)
- Petro Khoroshyy
- Institute of Biophysics, Biological Research Centre, Temesvári Körút 62, H-6726 Szeged, Hungary; (P.K.); (K.T.); (G.I.G.)
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Science, Flemingovo Náměstí 542/2, 16000 Prague, Czech Republic
| | - Katalin Tenger
- Institute of Biophysics, Biological Research Centre, Temesvári Körút 62, H-6726 Szeged, Hungary; (P.K.); (K.T.); (G.I.G.)
| | - Rita V. Chertkova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Miklukho-Maklaya 16/10, 117997 Moscow, Russia; (R.V.C.); (O.V.B.); (M.P.K.); (D.A.D.)
| | - Olga V. Bocharova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Miklukho-Maklaya 16/10, 117997 Moscow, Russia; (R.V.C.); (O.V.B.); (M.P.K.); (D.A.D.)
| | - Mikhail P. Kirpichnikov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Miklukho-Maklaya 16/10, 117997 Moscow, Russia; (R.V.C.); (O.V.B.); (M.P.K.); (D.A.D.)
- Biology Department, Lomonosov Moscow State University, Leninskie Gory 1/12, 119899 Moscow, Russia
| | - Natalia Borovok
- Department of Biochemistry and Molecular Biology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Tel Aviv 69978, Israel; (N.B.); (A.B.K.)
| | - Géza I. Groma
- Institute of Biophysics, Biological Research Centre, Temesvári Körút 62, H-6726 Szeged, Hungary; (P.K.); (K.T.); (G.I.G.)
| | - Dmitry A. Dolgikh
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Miklukho-Maklaya 16/10, 117997 Moscow, Russia; (R.V.C.); (O.V.B.); (M.P.K.); (D.A.D.)
- Biology Department, Lomonosov Moscow State University, Leninskie Gory 1/12, 119899 Moscow, Russia
| | - Alexander B. Kotlyar
- Department of Biochemistry and Molecular Biology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Tel Aviv 69978, Israel; (N.B.); (A.B.K.)
| | - László Zimányi
- Institute of Biophysics, Biological Research Centre, Temesvári Körút 62, H-6726 Szeged, Hungary; (P.K.); (K.T.); (G.I.G.)
- Correspondence:
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Method for Passive Droplet Sorting after Photo-Tagging. MICROMACHINES 2020; 11:mi11110964. [PMID: 33126559 PMCID: PMC7692103 DOI: 10.3390/mi11110964] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Revised: 10/22/2020] [Accepted: 10/26/2020] [Indexed: 12/16/2022]
Abstract
We present a method to photo-tag individual microfluidic droplets for latter selection by passive sorting. The use of a specific surfactant leads to the interfacial tension to be very sensitive to droplet pH. The photoexcitation of droplets containing a photoacid, pyranine, leads to a decrease in droplet pH. The concurrent increase in droplet interfacial tension enables the passive selection of irradiated droplets. The technique is used to select individual droplets within a droplet array as illuminated droplets remain in the wells while other droplets are eluted by the flow of the external oil. This method was used to select droplets in an array containing cells at a specific stage of apoptosis. The technique is also adaptable to continuous-flow sorting. By passing confined droplets over a microfabricated trench positioned diagonally in relation to the direction of flow, photo-tagged droplets were directed toward a different chip exit based on their lateral movement. The technique can be performed on a conventional fluorescence microscope and uncouples the observation and selection of droplets, thus enabling the selection on a large variety of signals, or based on qualitative user-defined features.
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Zhao Z, Zhang F, Zhang Z. A facile fluorescent "turn-off" method for sensing paraquat based on pyranine-paraquat interaction. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 199:96-101. [PMID: 29573700 DOI: 10.1016/j.saa.2018.03.042] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Revised: 03/09/2018] [Accepted: 03/12/2018] [Indexed: 06/08/2023]
Abstract
Development of a technically simple yet effective method for paraquat (PQ) detection is of great importance due to its high clinical and environmental relevance. In this study, we developed a pyranine-based fluorescent "turn-off" method for PQ sensing based on pyranine-PQ interaction. We investigated the dependence of analytical performance of this method on the experimental conditions, such as the ion strength, medium pH, and so on. Under the optimized conditions, the method is sensitive and selective, and could be used for PQ detection in real-world sample. This study essentially provides a readily accessible fluorescent system for PQ sensing which is cheap, robust, and technically simple, and it is envisaged to find more interesting clinical and environmental applications.
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Affiliation(s)
- Zuzhi Zhao
- Anhui Medical University, School of Basic Medicine, Hefei 230031, China
| | - Fengwei Zhang
- Anhui Medical University, School of Life Science, Hefei 230031, China
| | - Zipin Zhang
- Anhui University of Chinese Medicine, School of Pharmacy, Hefei 230012, China.
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Aspée A, Aliaga C, Maretti L, Zúñiga-Núñez D, Godoy J, Pino E, Cárdenas-Jirón G, Lopez-Alarcon C, Scaiano JC, Alarcon EI. Reaction Kinetics of Phenolic Antioxidants toward Photoinduced Pyranine Free Radicals in Biological Models. J Phys Chem B 2017; 121:6331-6340. [DOI: 10.1021/acs.jpcb.7b02779] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alexis Aspée
- Facultad
de Química y Biología, Universidad de Santiago de Chile, Casilla 40 Correo 33, Santiago, Chile
| | - Christian Aliaga
- Facultad
de Química y Biología, Universidad de Santiago de Chile, Casilla 40 Correo 33, Santiago, Chile
| | - Luca Maretti
- Department
of Chemistry and Biomolecular Sciences and Centre for Catalysis Research
and Innovation, University of Ottawa, 10 Marie Curie, Ottawa, Ontario K1N6N5, Canada
| | - Daniel Zúñiga-Núñez
- Facultad
de Química y Biología, Universidad de Santiago de Chile, Casilla 40 Correo 33, Santiago, Chile
| | - Jessica Godoy
- Facultad
de Química y Biología, Universidad de Santiago de Chile, Casilla 40 Correo 33, Santiago, Chile
| | - Eduardo Pino
- Facultad
de Química y Biología, Universidad de Santiago de Chile, Casilla 40 Correo 33, Santiago, Chile
| | - Gloria Cárdenas-Jirón
- Facultad
de Química y Biología, Universidad de Santiago de Chile, Casilla 40 Correo 33, Santiago, Chile
| | - Camilo Lopez-Alarcon
- Departamento
de Química Física, Facultad de Química, Pontificia Universidad Católica de Chile, C.P. 782 0436, Santiago, Chile
| | - Juan C. Scaiano
- Department
of Chemistry and Biomolecular Sciences and Centre for Catalysis Research
and Innovation, University of Ottawa, 10 Marie Curie, Ottawa, Ontario K1N6N5, Canada
| | - Emilio I. Alarcon
- Department
of Chemistry and Biomolecular Sciences and Centre for Catalysis Research
and Innovation, University of Ottawa, 10 Marie Curie, Ottawa, Ontario K1N6N5, Canada
- Bio-nanomaterials
Chemistry and Engineering Laboratory, Division of Cardiac Surgery, University of Ottawa Heart Institute, 40 Ruskin Street, Ottawa, Ontario K1Y 4W7, Canada
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Finkler B, Spies C, Vester M, Walte F, Omlor K, Riemann I, Zimmer M, Stracke F, Gerhards M, Jung G. Highly photostable "super"-photoacids for ultrasensitive fluorescence spectroscopy. Photochem Photobiol Sci 2014; 13:548-62. [PMID: 24469857 DOI: 10.1039/c3pp50404b] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The photoacid 8-hydroxypyren-1,3,6-trisulfonic acid (HPTS, pyranine) is a widely used model compound for the examination of excited state proton transfer (ESPT). We synthesized five "super"-photoacids with varying hydrophilicity and acidity on the basis of HPTS. By chemical modification of the three sulfonic acid substituents, the photoacidity is enhanced by up to more than five logarithmic units from pK*≈ 1.4 to ∼-3.9 for the most acidic compound. As a result, nearly quantitative ESPT in DMSO can be observed. The novel photoacids were characterized by steady-state and time-resolved fluorescence techniques showing distinctively red shifted spectra compared to HPTS while maintaining a high quantum yield near 90%. Photostability of the compounds was checked by fluorescence correlation spectroscopy (FCS) and was found to be adequately high for ultrasensitive fluorescence spectroscopy. The described photoacids present a valuable palette for a wide range of applications, especially when the properties of HPTS, i.e. highly charged, low photostability and only moderate excited state acidity, are limiting.
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Affiliation(s)
- Björn Finkler
- Biophysical Chemistry, Saarland University, Campus B2 2, 66123 Saarbrücken, Germany.
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Velásquez G, Ureta-Zañartu MS, López-Alarcón C, Aspée A. Electrochemical and Spectroscopic Study of Pyranine Fluorescent Probe: Role of Intermediates in Pyranine Oxidation. J Phys Chem B 2011; 115:6661-7. [DOI: 10.1021/jp112057d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Gabriela Velásquez
- Facultad de Química y Biología, Universidad de Santiago de Chile (USACH), Casilla 40, Correo 33, Santiago, Chile
| | - M. Soledad Ureta-Zañartu
- Facultad de Química y Biología, Universidad de Santiago de Chile (USACH), Casilla 40, Correo 33, Santiago, Chile
| | - Camilo López-Alarcón
- Departamento de Farmacia, Facultad de Química, Pontificia Universidad Católica de Chile, Av. Vicuña Mackenna 4860, Macul, Santiago
| | - Alexis Aspée
- Facultad de Química y Biología, Universidad de Santiago de Chile (USACH), Casilla 40, Correo 33, Santiago, Chile
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Jung G, Gerharz S, Schmitt A. Solvent-dependent steady-state fluorescence spectroscopy for searching ESPT-dyes: solvatochromism of HPTS revisited. Phys Chem Chem Phys 2009; 11:1416-26. [DOI: 10.1039/b816695a] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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Aliaga C, Arenas A, Aspée A, López-Alarcón C, Lissi E. Generation, Spectroscopic Characterization by EPR, and Decay of a Pyranine-Derived Radical. Helv Chim Acta 2007. [DOI: 10.1002/hlca.200790208] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Kottyar AB, Borovok N, Khoroshyy P, Tenger K, Zimányi L. Redox Photochemistry of Thiouredopyrenetrisulfonate¶. Photochem Photobiol 2007. [DOI: 10.1111/j.1751-1097.2004.tb01264.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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10
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Kotlyar AB, Borovok N, Khoroshyy P, Tenger K, Zimányi L. Redox Photochemistry of Thiouredopyrenetrisulfonate¶. Photochem Photobiol 2004; 79:489-93. [PMID: 15291297 DOI: 10.1562/rc-122r.1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
1-Thiouredopyrene-3,6,8-trisulfonate (TUPS) has recently been used as a photoinduced covalent redox label capable of reducing various cofactors of proteins. A new reaction of this dye, whereby its excited triplet state oxidizes suitable electron donors, is now reported. The characteristic difference spectrum of the reduced radical of TUPS is determined. We also observe the self-exchange electron transfer between two TUPS molecules in their triplet excited states and determine the reaction scheme and the rate constants of the various pathways in the process of triplet depletion. The ability of photoexcited TUPS to withdraw an electron from reduced cytochrome-c is also observed. It is thus demonstrated that TUPS is an appropriate photoinduced covalent redox label for initiating both the oxidative and reductive phases of electron transfer processes in biological macromolecules.
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Affiliation(s)
- Alexander B Kotlyar
- Department of Biochemistry, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Israel.
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Changes in pyranine absorption and emission spectra arising from its complexation to 2,2′-azo-bis(2-amidinopropane). J Photochem Photobiol A Chem 2003. [DOI: 10.1016/s1010-6030(02)00356-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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12
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Prayer C, Tran-Thi TH, Pommeret S, d'Oliveira P, Meynadier P. Light- and pH-driven electron transfer in the pyranine–methylviologen system. Chem Phys Lett 2000. [DOI: 10.1016/s0009-2614(00)00542-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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13
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Borovok N, Kotlyar AB, Pecht I, Skov LK, Farver O. Photoinduced electron transfer in singly labeled thiouredopyrenetrisulfonate azurin derivatives. FEBS Lett 1999; 457:277-82. [PMID: 10471793 DOI: 10.1016/s0014-5793(99)01043-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
A novel method for the initiation of intramolecular electron transfer reactions in azurin is reported. The method is based on laser photoexcitation of covalently attached thiouredopyrenetrisulfonate (TUPS), the reaction that generates the low potential triplet state of the dye with high quantum efficiency. TUPS derivatives of azurin, singly labeled at specific lysine residues, were prepared and purified to homogeneity by ion exchange HPLC. Transient absorption spectroscopy was used to directly monitor the rates of the electron transfer reaction from the photoexcited triplet state of TUPS to Cu(II) and the back reaction from Cu(I) to the oxidized dye. For all singly labeled derivatives, the rate constants of copper ion reduction were one or two orders of magnitude larger than for its reoxidation, consistent with the larger thermodynamic driving force for the former process. Using 3-D coordinates of the crystal structure of Pseudomonas aeruginosa azurin and molecular structure calculation of the TUPS modified proteins, electron transfer pathways were calculated. Analysis of the results revealed a good correlation between separation distance from donor to Cu ligating atom (His-N or Cys-S) and the observed rate constants of Cu(II) reduction.
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Affiliation(s)
- N Borovok
- Department of Biochemistry, The Tel-Aviv University, Ramat Aviv, Israel
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Solntsev KM, Huppert D, Agmon N. Photochemistry of “Super”-Photoacids. Solvent Effects. J Phys Chem A 1999. [DOI: 10.1021/jp9902295] [Citation(s) in RCA: 89] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kyril M. Solntsev
- School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel-Aviv University, Tel Aviv 69978, Israel
| | - Dan Huppert
- School of Chemistry, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel-Aviv University, Tel Aviv 69978, Israel
| | - Noam Agmon
- The Fritz Haber Research Center, Department of Physical Chemistry, The Hebrew University, Jerusalem 91904, Israel
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Jasuja R, Keyoung J, Reid GP, Trentham DR, Khan S. Chemotactic responses of Escherichia coli to small jumps of photoreleased L-aspartate. Biophys J 1999; 76:1706-19. [PMID: 10049350 PMCID: PMC1300146 DOI: 10.1016/s0006-3495(99)77329-7] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
Computer-assisted motion analysis coupled to flash photolysis of caged chemoeffectors provides a means for time-resolved analysis of bacterial chemotaxis. Escherichia coli taxis toward the amino acid attractant L-aspartate is mediated by the Tar receptor. The physiology of this response, as well as Tar structure and biochemistry, has been studied extensively. The beta-2, 6-dinitrobenzyl ester of L-aspartic acid and the 1-(2-nitrophenyl)ethyl ether of 8-hydroxypyrene-1,3,6-tris-sulfonic acid were synthesized. These compounds liberated L-aspartate and the fluorophore 8-hydroxypyrene 1,3,6-tris-sulfonic acid (pyranine) upon irradiation with near-UV light. Photorelease of the fluorophore was used to define the amplitude and temporal stability of the aspartate jumps employed in chemotaxis experiments. The dependence of chemotactic adaptation times on aspartate concentration, determined in mixing experiments, was best fit by two Tar aspartate-binding sites. Signal processing (excitation) times, amplitudes, and adaptive recovery of responses elicited by aspartate jumps producing less than 20% change in receptor occupancy were characterized in photorelease assays. Aspartate concentration jumps in the nanomolar range elicited measurable responses. The response threshold and sensitivity of swimming bacteria matched those of bacteria tethered to glass by a single flagellum. Stimuli of similar magnitude, delivered either by rapid mixing or photorelease, evoked responses of similar strength, as assessed by recovery time measurements. These times remained proportional to change in receptor occupancy close to threshold, irrespective of prior occupancy. Motor excitation responses decayed exponentially with time. Rates of excitation responses near threshold ranged from 2 to 7 s-1. These values are consistent with control of excitation signaling by decay of phosphorylated pools of the response regulator protein, CheY. Excitation response rates increased slightly with stimulus size up to values limited by the instrumentation; the most rapid was measured to be 16 +/- 3 (SE) s-1. This increase may reflect simultaneous activation of CheY dephosphorylation, together with inhibition of its phosphorylation.
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Affiliation(s)
- R Jasuja
- Department of Physiology and Biophysics, Albert Einstein College of Medicine, Bronx, New York 10461 USA
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Kotlyar AB, Borovok N. Intramolecular oxidation of cytochrome c by covalently attached sulfoaromatic molecules. BIOCHIMICA ET BIOPHYSICA ACTA 1997; 1321:221-8. [PMID: 9393639 DOI: 10.1016/s0005-2728(97)00058-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Two photosensitive molecules, 1-maleimidopyrene-3,6,8-trisulfonate (MPTS) and N-acetylaminoethyl-1-aminonaphthalene-5-sulfonate (AEDANS), are employed to drive the intramolecular oxidation of the heme residue in cytochrome c. Intense pulse illumination (60-120 MW cm-2) of MPTS and AEDANS in the aqueous solution by the third harmonic frequency of Nd-Yag laser drives a two successive-photon process of the dyes. The oxidized products originating from the dyes react with variety of electron donors. MPTS and AEDANS residues were covalently linked the Saccharomyces cerevisiae iso-1-cytochrome c by labeling of its single sulfhydryl group. When pulsed by intensive laser beam the heme of the labeled ferrocytochrome c undergoes fast oxidation. Transient absorption spectroscopy was used to directly measure the rate constants for the photoinduced electron-transfer reaction from the ferros heme group to the oxidized dyes. The rate constant was found to be (3.6 +/- 0.4) x 10(4) s-1 for MPTS derivative. The rate of the heme oxidation in AEDANS derivative was faster than response time of our detection system (20 ns). Rapid photooxidation of cytochrome c makes it a useful tool for fast initiation of electron transfer in oxidized direction within complexes of cytochrome c with the other redox proteins.
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Affiliation(s)
- A B Kotlyar
- Department of Biochemistry, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Israel.
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