Phenotypic plasticity in response to environmental heterogeneity contributes to fluctuating asymmetry in plants: first empirical evidence

Associations Between Developmental Stability, Canalization, and Phenotypic Plasticity in Response to Heterogeneous Experience

The processes of developmental stability, canalization, and phenotypic plasticity have ecological and evolutionary significance, and been studied extensively, but mostly separately and thus the relationships between them are not straightforward. Our objective was to better integrate these processes in the context of temporally heterogeneous environments. We did this by investigating the effects of early experience with temporal heterogeneity in water availability on associations between developmental stability, canalization, and phenotypic plasticity. We subjected eight plant species to a first round of alternating inundation and drought vs. constantly moderate water treatments (heterogeneous experience) and a second round of water conditions (to test plasticity). We measured fluctuating asymmetry (FA) in leaf size, intra- and inter-individual variation (CVintra and CVinter), and plasticity (PI) in traits and analyzed correlations between these variables across all species. Results showed little correlations between FA, CVintra and PI, several positive correlations between FA and CVinter in more stressful conditions, especially in as well as positive correlations between CVinter and PI initially and negative correlations between them later. These suggested the complexity of these relationships, which can depend on whether plasticity occurs. Greater inter-individual variation will more likely cooperate with plasticity before or during plastic response, whereas higher canalization may reflect phenotypic convergence. Both higher FA and CVintra can reflect faster growth, while CVintra may also reflect plant growth stage, and the two mechanisms should cooperate in response to environmental challenges. The complexity of these relationships suggests plants deal with environmental variation in elaborate and integrative ways which can be affected by many factors.

Leaf functional traits of Parrotia subaequalis from different environments in eastern China

Functional traits are important in understanding how plants respond and adapt to their immediate environment. Parrotia subaequalis is a highly endangered arbor species found throughout eastern China, primarily inhabiting hillsides and valleys, yet, little is known about the variation in leaf traits across these environments. In the present study, we tested this by comparing leaf surface area, leaf weight, leaf length, leaf symmetry and leaf mass per unit area, as well as the relationship between leaf traits and environmental factors and the scaling relationship between leaf surface area versus leaf dry mass. We observed significant differences in leaf surface area, weight, and length among the population sites, and these variables were strongly affected by environmental factors, especially high mean annual temperatures in hillside habitats and high mean annual precipitation in valley habitats. The scaling exponents remained numerically variant among the 10 populations, with different slopes greater than 1.0, and the scaling exponents increased significantly with hillside habitats. These metrics correlated with soil thickness associated with different habitat types. The areal ratio (AR) values in all populations deviated from 1, indicating that the two lamina sides were asymmetrical. The standardized symmetry index (SI) values displayed significant variation, especially in leaves from hillside habitats with a high degree of asymmetry. Collectively, our findings demonstrated that leaf functional traits exhibit considerable variability in response to different environmental contexts and provide valuable reference data that could be useful for conserving this endangered species.

Exploring the patterns of evolution: Core thoughts and focus on the saltational model

The Modern Synthesis, a pillar in biological thought, united Darwin's species origin concepts with Mendel's laws of character heredity, providing a comprehensive understanding of evolution within species. Highlighting phenotypic variation and natural selection, it elucidated the environment's role as a selective force, shaping populations over time. This framework integrated additional mechanisms, including genetic drift, random mutations, and gene flow, predicting their cumulative effects on microevolution and the emergence of new species. Beyond the Modern Synthesis, the Extended Evolutionary Synthesis expands perspectives by recognizing the role of developmental plasticity, non-genetic inheritance, and epigenetics. We suggest that these aspects coexist in the plant evolutionary process; in this context, we focus on the saltational model, emphasizing how saltation events, such as dichotomous saltation, chromosomal mutations, epigenetic phenomena, and polyploidy, contribute to rapid evolutionary changes. The saltational model proposes that certain evolutionary changes, such as the rise of new species, may result suddenly from single macromutations rather than from gradual changes in DNA sequences and allele frequencies within a species over time. These events, observed in domesticated and wild higher plants, provide well-defined mechanistic bases, revealing their profound impact on plant diversity and rapid evolutionary events. Notably, next-generation sequencing exposes the likely crucial role of allopolyploidy and autopolyploidy (saltational events) in generating new plant species, each characterized by distinct chromosomal complements. In conclusion, through this review, we offer a thorough exploration of the ongoing dissertation on the saltational model, elucidating its implications for our understanding of plant evolutionary processes and paving the way for continued research in this intriguing field.

Using high throughput screens to predict miscarriages with placental stem cells and long-term stress effects with embryonic stem cells

A problem in developmental toxicology is the massive loss of life from fertilization through gastrulation, and the surprising lack of knowledge of causes of miscarriage. Half to two-thirds of embryos are lost, and environmental and genetic causes are nearly equal. Simply put, it can be inferred that this is a difficult period for normal embryos, but that environmental stresses may cause homeostatic responses that move from adaptive to maladaptive with increasing exposures. At the lower 50% estimate, miscarriage causes greater loss-of-life than all cancers combined or of all cardio- and cerebral-vascular accidents combined. Surprisingly, we do not know if miscarriage rates are increasing or decreasing. Overshadowed by the magnitude of miscarriages, are insufficient data on teratogenic or epigenetic imbalances in surviving embryos and their stem cells. Superimposed on the difficult normal trajectory for peri-gastrulation embryos are added malnutrition, hormonal, and environmental stresses. An overarching hypothesis is that high throughput screens (HTS) using cultured viable reporter embryonic and placental stem cells (e.g., embryonic stem cells [ESC] and trophoblast stem cells [TSC] that report status using fluorescent reporters in living cells) from the pre-gastrulation embryo will most rapidly test a range of hormonal, environmental, nutritional, drug, and diet supplement stresses that decrease stem cell proliferation and imbalance stemness/differentiation. A second hypothesis is that TSC respond with greater sensitivity in magnitude to stress that would cause miscarriage, but ESC are stress-resistant to irreversible stemness loss and are best used to predict long-term health defects. DevTox testing needs more ESC and TSC HTS to model environmental stresses leading to miscarriage or teratogenesis and more research on epidemiology of stress and miscarriage. This endeavor also requires a shift in emphasis on pre- and early gastrulation events during the difficult period of maximum loss by miscarriage.

Shape asymmetry - what's new?

Studies of shape asymmetry have become increasingly abundant as the methods of geometric morphometrics have gained widespread use. Most of these studies have focussed on fluctuating asymmetry and have largely obtained similar results as more traditional analyses of asymmetry in distance measurements, but several notable differences have also emerged. A key difference is that shape analyses provide information on the patterns, not just the amount of variation, and therefore tend to be more sensitive. Such analyses have shown that apparently symmetric structures in animals consistently show directional asymmetry for shape, but not for size. Furthermore, the long-standing prediction that phenotypic plasticity in response to environmental heterogeneity can contribute to fluctuating asymmetry has been confirmed for the first time for the shape of flower parts (but not for size). Finally, shape analyses in structures with complex symmetry, such as many flowers, can distinguish multiple types of directional asymmetry, generated by distinct direction-giving factors, which combine to the single component observable in bilaterally symmetric structures. While analyses of shape asymmetry are broadly compatible with traditional analyses of asymmetry, they incorporate more detailed morphological information, particularly for structures with complex symmetry, and therefore can reveal subtle biological effects that would otherwise not be apparent. This makes them a promising tool for a wide range of studies in the basic and applied life sciences.

Directional asymmetry and direction-giving factors: Lessons from flowers with complex symmetry

Directional asymmetry is a systematic difference between the left and right sides for structures with bilateral symmetry or a systematic differentiation among repeated parts for complex symmetry. This study explores factors that produce directional asymmetry in the flower of Iris pumila, a structure with complex symmetry that makes it possible to investigate multiple such factors simultaneously. The shapes and sizes of three types of floral organs, the falls, standards, and style branches, were quantified using the methods of geometric morphometrics. For each flower, this study recorded the compass orientations of floral organs as well as their anatomical orientations relative to the two spathes subtending each flower. To characterize directional asymmetry at the whole-flower level, differences in the average sizes and shapes according to compass orientation and relative orientation were computed, and the left-right asymmetry was also evaluated for each individual organ. No size or shape differences within flowers were found in relation to anatomical position; this may relate to the terminal position of flowers in Iris pumila, suggesting that there may be no adaxial-abaxial polarity, which is very prominent in many other taxa. There was clear directional asymmetry of shape in relation to compass orientation, presumably driven by a consistent environmental gradient such as solar irradiance. There was also clear directional asymmetry between left and right halves of every floral organ, most likely related to the arrangement of organs in the bud. These findings indicate that different factors are acting to produce directional asymmetry at different levels. In conventional analyses not recording flower orientations, these effects would be impossible to disentangle from each other and would probably be included as part of fluctuating asymmetry.

Associations between leaf developmental stability, variability, canalization, and phenotypic plasticity in Abutilon theophrasti

Developmental stability, canalization, and phenotypic plasticity are the most common sources of phenotypic variation, yet comparative studies investigating the relationships between these sources, specifically in plants, are lacking. To investigate the relationships among developmental stability or instability, developmental variability, canalization, and plasticity in plants, we conducted a field experiment with Abutilon theophrasti, by subjecting plants to three densities under infertile vs. fertile soil conditions. We measured the leaf width (leaf size) and calculated fluctuating asymmetry (FA), coefficient of variation within and among individuals (CVintra and CVinter), and plasticity (PIrel) in leaf size at days 30, 50, and 70 of plant growth, to analyze the correlations among these variables in response to density and soil conditions, at each of or across all growth stages. Results showed increased density led to lower leaf FA, CVintra, and PIrel and higher CVinter in fertile soil. A positive correlation between FA and PIrel occurred in infertile soil, while correlations between CVinter and PIrel and between CVinter and CVintra were negative at high density and/or in fertile soil, with nonsignificant correlations among them in other cases. Results suggested the complexity of responses of developmental instability, variability, and canalization in leaf size, as well as their relationships, which depend on the strength of stresses. Intense aboveground competition that accelerates the decrease in leaf size (leading to lower plasticity) will be more likely to reduce developmental instability, variability, and canalization in leaf size. Increased developmental instability and intra- and interindividual variability should be advantageous and facilitate adaptive plasticity in less stressful conditions; thus, they are more likely to positively correlate with plasticity, whereas developmental stability and canalization with lower developmental variability should be beneficial for stabilizing plant performance in more stressful conditions, where they tend to have more negative correlations with plasticity.

Male sterility significantly elevates shape variation and fluctuating asymmetry of zygomorphic corolla in gynodioecious Glechoma hederacea (Lamiaceae)

Female flowers of gynodioecious plants usually have smaller corollas than bisexual flowers. This difference is explained as a developmental consequence of stamen abortion and as a result of stronger selection for larger corolla size in hermaphroditic flowers that solely ensure male function within populations. This study evaluated whether the size difference of zygomorphic corollas in a widely distributed gynodioecious herb Glechoma hederacea is accompanied by variation in shape and bilateral fluctuating asymmetry of sexually differentiated flowers. Geometric morphometric analyses of bilateral symmetry in the shapes of corolla lower lips showed that male-sterile flowers were significantly more plastic and asymmetric, implying that they may be subjected to weaker stabilizing selection for corolla shape in comparison to hermaphrodites. These results illustrated that sexual differentiation may be an important factor contributing to bilateral fluctuating asymmetry in the shape of zygomorphic flowers.

Inbreeding and competition, but not abiotic stresses, increase fluctuating asymmetry of Mimulus guttatus flowers

Genetic and environmental disturbances are expected to increase developmental instability, which may result in higher fluctuating asymmetry (FA), i.e. small random deviations from symmetry. Plant leaves often do not show this pattern, possibly due to high phenotypic plasticity of leaf shape and low adaptive significance of leaf symmetry. In contrast, symmetry in many animal traits but also in flower shape is considered to be under selection, and FA in such traits may better reflect developmental instability. Using geometric morphometrics, I analysed the symmetry of flowers of inbred and outbred Mimulus guttatus (Phrymaceae) plants grown under five stress treatments with and without grass competition. Flower FA was not increased by abiotic stress, but by inbreeding and competition. As inbreeding and competition affected different principal components of flower FA, different mechanisms may be involved in their effects on FA. FA decreased with individual biomass particularly in selfed offspring, which suggests that inbreeding increased FA particularly when growth was limited by environmental or genetic constraints. Increased flower FA of inbred offspring may explain increased flower handling time and reduced pollinator preference for inbred plants in other M. guttatus studies, and could thus have important consequences for plant demography and plant–pollinator interactions.

Gynodioecy in the common spindle tree (Euonymus europaeus L.) involves differences in the asymmetry of corolla shapes between sexually differentiated flowers

Gynodioecy is typically associated with a smaller perianth size in purely pistillate flowers than in hermaphrodite flowers. However, it is unclear whether this size differentiation is associated with any differences in flower shape between the two sexual groups. A geometric morphometric analysis of the symmetry of tetrameric corolla shapes was used in the study of Euonymus europaeus L., Darwin’s classical system of floral sexual differentiation. I investigated whether there are any shape differences between the female and bisexual flowers, with respect to both purely symmetric variation involving coordinated shape changes of the four petals and asymmetry among petals within flowers. The corolla shapes of the female and bisexual flowers and the variability among flowers within each sexual group were very similar in the purely symmetric components of shape variation. However, the female flowers were significantly more asymmetric with respect to both the lateral and transversal asymmetry of their corolla shapes. This is the first study to apply geometric morphometrics in the analysis of morphological patterns in a sexually differentiated gynodioecious plant system. The results showed that subtle shape differences in corolla asymmetry differ between the sexual groups and indicate diverging developmental or selection signals between the sexes.

Disentangling the Environmental Factors That Shape Genetic and Phenotypic Leaf Trait Variation in the Tree Qualea grandiflora Across the Brazilian Savanna

Identifying the environmental factors that shape intraspecific genetic and phenotypic diversity of species can provide insights into the processes that generate and maintain divergence in highly diverse biomes such as the savannas of the Neotropics. Here, we sampled Qualea grandiflora, the most widely distributed tree species in the Cerrado, a large Neotropical savanna. We analyzed genetic variation with microsatellite markers in 23 populations (418 individuals) and phenotypic variation of 10 metamer traits (internode, petiole and corresponding leaf lamina) in 36 populations (744 individuals). To evaluate the role of geography, soil, climate, and wind speed in shaping the divergence of genetic and phenotypic traits among populations, we used Generalized Dissimilarity Modelling. We also used multiple regressions to further investigate the contributions of those environmental factors on leaf trait diversity. We found high genetic diversity, which was geographically structured. Geographic distance was the main factor shaping genetic divergence in Qualea grandiflora, reflecting isolation by distance. Genetic structure was more related to past climatic changes than to the current climate. We also found high metamer trait variation, which seemed largely influenced by precipitation, soil bulk density and wind speed during the period of metamer development. The high degree of metamer trait variation seems to be due to both, phenotypic plasticity and local adaptation to different environmental conditions, and may explain the success of the species in occupying all the Cerrado biome.

Male Horn Lack of Allometry May be Tied to Food Relocation Behaviour in Lifting Dung Beetles (Coleoptera, Scarabaeidae, Eucraniini)

The small dung beetle tribe Eucraniini includes extremely specialized species that have been defined as "lifters" according to their food relocation behaviour. They are characterized by the presence of well-developed expansions on the head and pronotum, which can be included in the large and varied group of horns, whose presence is usually related to complex reproductive tactics. In this study, two closely related species, Anomiopsoides cavifrons and A. heteroclyta, were examined employing traditional and geometric morphometrics to test whether the Eucraniini has polymorphic males that might exhibit different reproductive tactics, as in the sister tribe Phanaeini, for which a male trimorphism was demonstrated. If also present in Eucraniini polyphenism could be considered a plesiomorphy common to the two clades. The inter- and intraspecific shape variation and object symmetry of the head and the scaling relationships between body size and traits were evaluated. Marked interspecific and small intraspecific differences in shape variation, high symmetry, and similar isometric growth patterns were shown in both species. The hypothesis of male polymorphism in Anomiopsoides was thus rejected. Instead, the results supported the alternative hypothesis that Eucraniini lacks male polymorphism, perhaps due to functional constraints affecting the shape of the structures involved in their peculiar food relocating behaviour.

Conjugacy of two types of phenotypic variability of small-leaved linden

The properties of five bilaterally symmetrical features of the leaf blades of the small-leaved linden (Tilia cordata Mill.) in four populations of the Moscow Region in 2014–2017 were studied. The angle trait was excluded, because it possessed the property of directional asymmetry. Instead, a new linear trait was used: the distance between the base of the second vein of the first order and the base of the first vein of the second order on the first vein of the first order. The population difference in fluctuating asymmetry (FA) was found only in the first two traits (leaf width and distance between the bases of the first vein of the first order and the second vein of the second order). The largest value of FA was in the urban environment, the smallest was in the rural areas. A weak negative correlation was obtained between the magnitude of linear characteristics and the value of FA, as well as a weak positive correlation relationship between the values of FA in five traits. The first trait had the highest fluctuation variability, and the second one had the highest plastic variability. The regression dependence of the fluctuation variability on the plastic variability (b1 = 0.25, p <0.05) and the dependence of these two types of variability on the interaction of the factors “year” and “site of sampling” were revealed. Thus, the conclusion was made about the conjugacy of two types of variability: fluctuation and plastic. According to the authors, asynchronous growth, competition for light in conditions of high solar activity in 2014–2016 compared to the abnormal wet summer of 2017 led to an increase in FA due to destabilization of mechanisms of growth and regulation of gene expression, which contributed to a decrease in the stability of development. The increase in FA and the decrease in the developmental stability in urban ambient in 2016 could be due to: a)an intensive flow of vehicles in spring and summer, b) a high level of groundwater in this part of the city and c) increased hydrolytic acidity of the soil.

Morphological allometry constrains symmetric shape variation, but not asymmetry, of Halimeda tuna (Bryopsidales, Ulvophyceae) segments

Green algae of the genus Halimeda have modular siphonous thalli composed of multiple repeated segments. Morphological variation among the segments has been related to various environmental factors, which often jointly affect their size and shape. The segments are bilaterally symmetric, which means that their shape variation can be decomposed into the symmetric and asymmetric components. Asymmetric variation might reflect both environmental heterogeneity and developmental instability of morphogenetic processes during the development of segments. In the present study, we examined if segment shape in H. tuna is related to their size and if an allometric relationship can also be found with respect to their asymmetry. Relative contributions of directional and fluctuating asymmetry to the segment shape variation within individual plants were investigated at two close localities in the northern Adriatic Sea. A series of equidistant semilandmarks were set along the outline of the segments, and analyzed by geometric morphometrics using two parallel methods to optimize their final position. Symmetric variation was strongly constrained by allometry, which also explained differences between populations. Smaller segments were significantly more asymmetric, but the difference in asymmetry between populations could not be explained solely by this allometric relationship. These differences between populations might have been caused by variation in local environmental factors. We conclude that members of the genus Halimeda represent an intriguing model system for studies of morphometric symmetry and asymmetry of sessile marine organisms, including effects of allometric relationships and infraspecific variation in relation to environmental factors of the benthic coastal habitats.

A Step-by-Step Guide for Geometric Morphometrics of Floral Symmetry

This paper provides a step-by-step guide for the morphological analysis of corolla and the decomposition of corolla shape variation into its symmetric and asymmetric components. The shape and symmetric organisation of corolla are key traits in the developmental and evolutionary biology of flowering plants. The various spatial layout of petals can exhibit bilateral symmetry, rotational symmetry or more complex combination of symmetry types. Here, I describe a general landmark-based geometric morphometric framework for the full statistical shape analysis of corolla and exemplify its use with four fully worked out case studies including tissue treatment, imaging, landmark data collection, file formatting, and statistical analyses: (i) bilateral symmetry (Fedia graciliflora), (ii) two perpendicular axes of bilateral symmetry (Erysimum mediohispanicum), (iii) rotational symmetry (Vinca minor), and (iv) combined bilateral and rotational symmetry (Trillium undulatum). The necessary tools for such analyses are not implemented in standard morphometric software and they are therefore provided here as functions running in the R environment. Principal Component Analysis is used to separate symmetric and asymmetric components of variation, respectively, quantifying variation among and within individuals. For bilaterally symmetric flowers, only one component of left-right asymmetric variation is extracted, while flowers with more complex symmetric layout have components of asymmetric variation associated with each symmetry operator implied (e.g., left-right asymmetry and adaxial-abaxial asymmetry). Fundamental information on the genetic, developmental, and environmental determinants of shape variation can be inferred from this decomposition (e.g., directional asymmetry, fluctuating asymmetry) and further exploited to document patterns of canalization, developmental stability, developmental modularity and morphological integration. Even if symmetry and asymmetry are not the primary interest of a study on corolla shape variation, statistical and anatomical arguments support the use of the framework advocated. This didactic protocol will help both morphometricians and non-morphometricians to further understand the role of symmetry in the development, variation and adaptive evolution of flowers.

Arabidopsis phenotyping through geometric morphometrics

Background

Recently, great technical progress has been achieved in the field of plant phenotyping. High-throughput platforms and the development of improved algorithms for rosette image segmentation make it possible to extract shape and size parameters for genetic, physiological, and environmental studies on a large scale. The development of low-cost phenotyping platforms and freeware resources make it possible to widely expand phenotypic analysis tools for Arabidopsis. However, objective descriptors of shape parameters that could be used independently of the platform and segmentation software used are still lacking, and shape descriptions still rely on ad hoc or even contradictory descriptors, which could make comparisons difficult and perhaps inaccurate. Modern geometric morphometrics is a family of methods in quantitative biology proposed to be the main source of data and analytical tools in the emerging field of phenomics studies. Based on the location of landmarks (corresponding points) over imaged specimens and by combining geometry, multivariate analysis, and powerful statistical techniques, these tools offer the possibility to reproducibly and accurately account for shape variations among groups and measure them in shape distance units.

Results

Here, a particular scheme of landmark placement on Arabidopsis rosette images is proposed to study shape variation in viral infection processes. Shape differences between controls and infected plants are quantified throughout the infectious process and visualized. Quantitative comparisons between two unrelated ssRNA+ viruses are shown, and reproducibility issues are assessed.

Conclusions

Combined with the newest automated platforms and plant segmentation procedures, geometric morphometric tools could boost phenotypic features extraction and processing in an objective, reproducible manner.