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De La Cruz KF, Townsend EC, Alex Cheong JZ, Salamzade R, Liu A, Sandstrom S, Davila E, Huang L, Xu KH, Wu SY, Meudt JJ, Shanmuganayagam D, Gibson ALF, Kalan LR. The porcine skin microbiome exhibits broad fungal antagonism. Fungal Genet Biol 2024; 173:103898. [PMID: 38815692 DOI: 10.1016/j.fgb.2024.103898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 05/02/2024] [Accepted: 05/21/2024] [Indexed: 06/01/2024]
Abstract
The skin and its microbiome function to protect the host from pathogen colonization and environmental stressors. In this study, using the Wisconsin Miniature Swine™ model, we characterize the porcine skin fungal and bacterial microbiomes, identify bacterial isolates displaying antifungal activity, and use whole-genome sequencing to identify biosynthetic gene clusters encoding for secondary metabolites that may be responsible for the antagonistic effects on fungi. Through this comprehensive approach of paired microbiome sequencing with culturomics, we report the discovery of novel species of Corynebacterium and Rothia. Further, this study represents the first comprehensive evaluation of the porcine skin mycobiome and the evaluation of bacterial-fungal interactions on this surface. Several diverse bacterial isolates exhibit potent antifungal properties against opportunistic fungal pathogens in vitro. Genomic analysis of inhibitory species revealed a diverse repertoire of uncharacterized biosynthetic gene clusters suggesting a reservoir of novel chemical and biological diversity. Collectively, the porcine skin microbiome represents a potential unique source of novel antifungals.
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Affiliation(s)
- Karinda F De La Cruz
- Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - Elizabeth C Townsend
- Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States; Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI, United States; Medical Scientist Training Program, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - J Z Alex Cheong
- Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States; Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI, United States
| | - Rauf Salamzade
- Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States; Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI, United States
| | - Aiping Liu
- Department of Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - Shelby Sandstrom
- Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - Evelin Davila
- Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States; National Summer Undergraduate Research Project, University of Arizona, Tucson, AZ, United States
| | - Lynda Huang
- Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - Kayla H Xu
- Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - Sherrie Y Wu
- Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - Jennifer J Meudt
- Department of Animal & Dairy Sciences, University of Wisconsin, Madison, WI, United States; Center for Biomedical Swine Research & Innovation, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - Dhanansayan Shanmuganayagam
- Department of Animal & Dairy Sciences, University of Wisconsin, Madison, WI, United States; Center for Biomedical Swine Research & Innovation, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - Angela L F Gibson
- Department of Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States
| | - Lindsay R Kalan
- Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States; Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Canada; M.G. DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada; David Braley Centre for Antibiotic Discovery, McMaster University, Hamilton, Ontario, Canada.
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Iverson WO, Karanth S, Wilcox A, Pham CD, Lockhart SR, Nicholson SM. Talaromycosis (Penicilliosis) in a Cynomolgus Macaque. Vet Pathol 2018; 55:591-594. [PMID: 29444633 DOI: 10.1177/0300985818758468] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
A sexually mature Chinese-origin female Macaca fascicularis assigned to the high-dose group in a 26-week toxicology study with an experimental immunomodulatory therapeutic antibody (a CD40 L antagonist fusion protein) was euthanized at the scheduled terminal sacrifice on study day 192. The animal was healthy at study initiation and remained clinically normal throughout the study. On study day 141, abnormal clinical pathology changes were found during a scheduled evaluation; splenomegaly was detected on study day 149 and supported by ultrasound examination. At the scheduled necropsy, there was marked splenomegaly with a nodular and discolored appearance. Cytologic examination of a splenic impression smear revealed yeast-like organisms within macrophages. Histologically, there was disseminated systemic granulomatous inflammation with 2- to 3-μm oval, intracytoplasmic yeast-like organisms in multiple organs identified as Talaromyces (Penicillium) marneffei. This organism, not previously reported as a pathogen in macaques, causes an important opportunistic infection in immunosuppressed humans in specific global geographic locations.
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Affiliation(s)
| | | | - Angela Wilcox
- 2 Charles River Laboratories, Preclinical Services, Nevada, Reno, NV, USA
| | - Cau D Pham
- 3 Division of Foodborne, Waterborne and Environmental Disease, Centers for Disease Control and Prevention, National Center for Emerging and Zoonotic Infectious Disease, Mycotic Diseases Branch, Fungal Reference Unit, Atlanta, GA, USA
| | - Shawn R Lockhart
- 3 Division of Foodborne, Waterborne and Environmental Disease, Centers for Disease Control and Prevention, National Center for Emerging and Zoonotic Infectious Disease, Mycotic Diseases Branch, Fungal Reference Unit, Atlanta, GA, USA
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Neves JJ, Francelino M, Silva FG, Baptista LC, Bueno MG, Catão-Dias JL, Molina C, Kierulff MC, Pissinatti A, Coutinho SDA. Survey of Malassezia sp and dermatophytes in the cutaneous microbiome of free-ranging golden-headed lion tamarins (Leontopithecus chrysomelas - Kuhl, 1820). J Med Primatol 2017; 46:65-69. [PMID: 28271525 DOI: 10.1111/jmp.12259] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/06/2017] [Indexed: 11/29/2022]
Abstract
BACKGROUND Data about the presence of fungi on the cutaneous surface of wild animals are scarce. The aim of this study was to survey dermatophytes and Malassezia sp in the external ear canal and haircoat of Leontopithecus chrysomelas. METHODS A total of 928 clinical samples were collected from 232 animals: For Malassezia screening 696 samples were studied, 464 of cerumen and 232 of haircoat; another 232 haircoat samples were studied for dermatophyte analysis. RESULTS A geophilic dermatophyte, Microsporum cookie, was isolated from one young female. Lipodependent Malassezia was isolated from 76 animals and 87 clinical samples, 26 from the cerumen and 61 from the haircoat (statistically significant); there were no differences related to gender and age. CONCLUSIONS Results suggested that lipodependent Malassezia is part of the skin microbiome of these animals. The prevalence of dermatophytes was too low and probably not relevant for the health of the studied population.
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Affiliation(s)
- Juan Ja Neves
- Laboratory of Molecular and Cellular Biology, Paulista University - UNIP, São Paulo, Brazil
| | - Marcelo Francelino
- Laboratory of Molecular and Cellular Biology, Paulista University - UNIP, São Paulo, Brazil
| | - Flavia Gl Silva
- Laboratory of Molecular and Cellular Biology, Paulista University - UNIP, São Paulo, Brazil
| | - Luana Cl Baptista
- Laboratory of Molecular and Cellular Biology, Paulista University - UNIP, São Paulo, Brazil
| | | | - José L Catão-Dias
- Laboratory of Wildlife Comparative Pathology, School of Veterinary Medicine and Animal Sciences, University of São Paulo - USP, São Paulo, Brazil
| | - Camila Molina
- Instituto Pri-Matas para Conservação da Biodiversidade, Belo Horizonte, Brazil
| | - Maria Cm Kierulff
- Instituto Pri-Matas para Conservação da Biodiversidade, Belo Horizonte, Brazil.,Programa de Pós-graduação em Biodiversidade Tropical, UFES - Universidade Federal do Espírito Santo/CEUNES, São Mateus, Brazil
| | | | - Selene DA Coutinho
- Laboratory of Molecular and Cellular Biology, Paulista University - UNIP, São Paulo, Brazil
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FILAMENTOUS FUNGI ISOLATED FROM THE FUR MICROBIOTA OF CALLITRICHIDS KEPT IN CAPTIVITY IN BRAZIL. J Zoo Wildl Med 2015; 46:350-4. [PMID: 26056892 DOI: 10.1638/2013-0242r3.1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
This study aimed to isolate filamentous fungi from the fur of primates of the genus Callithrix kept in the Centre for Rehabilitation of Wild Animals (CRWA) at the Tietê Ecological Park, São Paulo, SP, Brazil. Samples of the fur of 19 specimens of black-tufted marmosets (Callithrix penicillata) and 6 specimens of white-tufted-ear marmosets (Callithrix jacchus) were obtained by the square carpet technique. The samples were plated on Mycosel™ agar medium (Difco™) and incubated at 25°C for 21 days. The identification of each isolated mold was based on its macroscopic and microscopic features and followed classical recommendations. The following filamentous fungi were isolated: Penicillium spp. (76%), Cladosporium spp. (60%), Acremonium spp. (44%), Scopulariopsis spp. (24%), Aspergillus spp. (16%), Chrysosporium spp. (16%), and Fusarium spp. (8%). Dermatophyte fungi were not detected. We conclude that C. penicillata and C. jacchus kept in captivity are sources of potentially pathogenic filamentous fungi that may represent a risk factor for immunocompromised individuals who may eventually establish contact with them.
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d'Ovidio D, Grable SL, Ferrara M, Santoro D. Prevalence of dermatophytes and other superficial fungal organisms in asymptomatic guinea pigs in Southern Italy. J Small Anim Pract 2014; 55:355-8. [PMID: 24697671 DOI: 10.1111/jsap.12216] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/07/2014] [Indexed: 11/29/2022]
Abstract
OBJECTIVES Guinea pigs have been indicated as a potential source of zoophilic dermatophytes that cause human dermatomycosis. The purpose of this study was to evaluate the prevalence of dermatophytes as well as saprophytic fungi in asymptomatic pet guinea pigs in Southern Italy. METHODS Two-hundred pet guinea pigs were enrolled from both private veterinary clinics and pet shops in the Campania region, Italy, from August 2012 to September 2013. Samples were collected using the MacKenzie's toothbrush technique. The plates were incubated for four weeks at 25°C and identification of the fungal colonies was based on both macroscopic and microscopic characteristics. RESULTS Two pathogenic dermatophytes were isolated in 9 (4·5%) of 200 guinea pigs; Epidermophyton species in 2 (1%) and Scopulariopsis species in 7 (3·5%). Saprophytic dermatophytes were isolated from 151 (75·5%) animals enrolled. No fungal growth was observed in 40 (20%) guinea pigs. CLINICAL SIGNIFICANCE The results of this study indicate a low prevalence of pathogenic dermatophytes in pet guinea pigs in Southern Italy but the presence of Epidermophyton and Scopulariopsis species in asymptomatic pet guinea pigs.
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Affiliation(s)
- D d'Ovidio
- Private practitioner, Arzano (Napoli), 80022, Italy
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