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Rolls ET, Treves A. A theory of hippocampal function: New developments. Prog Neurobiol 2024; 238:102636. [PMID: 38834132 DOI: 10.1016/j.pneurobio.2024.102636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Revised: 04/15/2024] [Accepted: 05/30/2024] [Indexed: 06/06/2024]
Abstract
We develop further here the only quantitative theory of the storage of information in the hippocampal episodic memory system and its recall back to the neocortex. The theory is upgraded to account for a revolution in understanding of spatial representations in the primate, including human, hippocampus, that go beyond the place where the individual is located, to the location being viewed in a scene. This is fundamental to much primate episodic memory and navigation: functions supported in humans by pathways that build 'where' spatial view representations by feature combinations in a ventromedial visual cortical stream, separate from those for 'what' object and face information to the inferior temporal visual cortex, and for reward information from the orbitofrontal cortex. Key new computational developments include the capacity of the CA3 attractor network for storing whole charts of space; how the correlations inherent in self-organizing continuous spatial representations impact the storage capacity; how the CA3 network can combine continuous spatial and discrete object and reward representations; the roles of the rewards that reach the hippocampus in the later consolidation into long-term memory in part via cholinergic pathways from the orbitofrontal cortex; and new ways of analysing neocortical information storage using Potts networks.
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Affiliation(s)
- Edmund T Rolls
- Oxford Centre for Computational Neuroscience, Oxford, UK; Department of Computer Science, University of Warwick, Coventry CV4 7AL, UK.
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2
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Rolls ET. Hippocampal spatial view cells for memory and navigation, and their underlying connectivity in humans. Hippocampus 2023; 33:533-572. [PMID: 36070199 PMCID: PMC10946493 DOI: 10.1002/hipo.23467] [Citation(s) in RCA: 29] [Impact Index Per Article: 29.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 08/16/2022] [Accepted: 08/16/2022] [Indexed: 01/08/2023]
Abstract
Hippocampal and parahippocampal gyrus spatial view neurons in primates respond to the spatial location being looked at. The representation is allocentric, in that the responses are to locations "out there" in the world, and are relatively invariant with respect to retinal position, eye position, head direction, and the place where the individual is located. The underlying connectivity in humans is from ventromedial visual cortical regions to the parahippocampal scene area, leading to the theory that spatial view cells are formed by combinations of overlapping feature inputs self-organized based on their closeness in space. Thus, although spatial view cells represent "where" for episodic memory and navigation, they are formed by ventral visual stream feature inputs in the parahippocampal gyrus in what is the parahippocampal scene area. A second "where" driver of spatial view cells are parietal inputs, which it is proposed provide the idiothetic update for spatial view cells, used for memory recall and navigation when the spatial view details are obscured. Inferior temporal object "what" inputs and orbitofrontal cortex reward inputs connect to the human hippocampal system, and in macaques can be associated in the hippocampus with spatial view cell "where" representations to implement episodic memory. Hippocampal spatial view cells also provide a basis for navigation to a series of viewed landmarks, with the orbitofrontal cortex reward inputs to the hippocampus providing the goals for navigation, which can then be implemented by hippocampal connectivity in humans to parietal cortex regions involved in visuomotor actions in space. The presence of foveate vision and the highly developed temporal lobe for object and scene processing in primates including humans provide a basis for hippocampal spatial view cells to be key to understanding episodic memory in the primate and human hippocampus, and the roles of this system in primate including human navigation.
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Affiliation(s)
- Edmund T. Rolls
- Oxford Centre for Computational NeuroscienceOxfordUK
- Department of Computer ScienceUniversity of WarwickCoventryUK
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3
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Quian Quiroga R. An integrative view of human hippocampal function: Differences with other species and capacity considerations. Hippocampus 2023; 33:616-634. [PMID: 36965048 DOI: 10.1002/hipo.23527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 02/11/2023] [Accepted: 03/09/2023] [Indexed: 03/27/2023]
Abstract
We describe an integrative model that encodes associations between related concepts in the human hippocampal formation, constituting the skeleton of episodic memories. The model, based on partially overlapping assemblies of "concept cells," contrast markedly with the well-established notion of pattern separation, which relies on conjunctive, context dependent single neuron responses, instead of the invariant, context independent responses found in the human hippocampus. We argue that the model of partially overlapping assemblies is better suited to cope with memory capacity limitations, that the finding of different types of neurons and functions in this area is due to a flexible and temporary use of the extraordinary machinery of the hippocampus to deal with the task at hand, and that only information that is relevant and frequently revisited will consolidate into long-term hippocampal representations, using partially overlapping assemblies. Finally, we propose that concept cells are uniquely human and that they may constitute the neuronal underpinnings of cognitive abilities that are much further developed in humans compared to other species.
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Affiliation(s)
- Rodrigo Quian Quiroga
- Hospital del Mar Medical Research Institute (IMIM), Barcelona, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain
- Centre for Systems Neuroscience, University of Leicester, Leicester, UK
- Department of neurosurgery, clinical neuroscience center, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China
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4
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A robust spike sorting method based on the joint optimization of linear discrimination analysis and density peaks. Sci Rep 2022; 12:15504. [PMID: 36109581 PMCID: PMC9477889 DOI: 10.1038/s41598-022-19771-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Accepted: 09/05/2022] [Indexed: 11/08/2022] Open
Abstract
Spike sorting is a fundamental step in extracting single-unit activity from neural ensemble recordings, which play an important role in basic neuroscience and neurotechnologies. A few algorithms have been applied in spike sorting. However, when noise level or waveform similarity becomes relatively high, their robustness still faces a big challenge. In this study, we propose a spike sorting method combining Linear Discriminant Analysis (LDA) and Density Peaks (DP) for feature extraction and clustering. Relying on the joint optimization of LDA and DP: DP provides more accurate classification labels for LDA, LDA extracts more discriminative features to cluster for DP, and the algorithm achieves high performance after iteration. We first compared the proposed LDA-DP algorithm with several algorithms on one publicly available simulated dataset and one real rodent neural dataset with different noise levels. We further demonstrated the performance of the LDA-DP method on a real neural dataset from non-human primates with more complex distribution characteristics. The results show that our LDA-DP algorithm extracts a more discriminative feature subspace and achieves better cluster quality than previously established methods in both simulated and real data. Especially in the neural recordings with high noise levels or waveform similarity, the LDA-DP still yields a robust performance with automatic detection of the number of clusters. The proposed LDA-DP algorithm achieved high sorting accuracy and robustness to noise, which offers a promising tool for spike sorting and facilitates the following analysis of neural population activity.
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Granado M, Collavini S, Baravalle R, Martinez N, Montemurro MA, Rosso OA, Montani F. High-frequency oscillations in the ripple bands and amplitude information coding: Toward a biomarker of maximum entropy in the preictal signals. CHAOS (WOODBURY, N.Y.) 2022; 32:093151. [PMID: 36182366 DOI: 10.1063/5.0101220] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Accepted: 08/29/2022] [Indexed: 06/16/2023]
Abstract
Intracranial electroencephalography (iEEG) can directly record local field potentials (LFPs) from a large set of neurons in the vicinity of the electrode. To search for possible epileptic biomarkers and to determine the epileptogenic zone that gives rise to seizures, we investigated the dynamics of basal and preictal signals. For this purpose, we explored the dynamics of the recorded time series for different frequency bands considering high-frequency oscillations (HFO) up to 240 Hz. We apply a Hilbert transform to study the amplitude and phase of the signals. The dynamics of the different frequency bands in the time causal entropy-complexity plane, H × C, is characterized by comparing the dynamical evolution of the basal and preictal time series. As the preictal states evolve closer to the time in which the epileptic seizure starts, the, H × C, dynamics changes for the higher frequency bands. The complexity evolves to very low values and the entropy becomes nearer to its maximal value. These quasi-stable states converge to equiprobable states when the entropy is maximal, and the complexity is zero. We could, therefore, speculate that in this case, it corresponds to the minimization of Gibbs free energy. In this case, the maximum entropy is equivalent to the principle of minimum consumption of resources in the system. We can interpret this as the nature of the system evolving temporally in the preictal state in such a way that the consumption of resources by the system is minimal for the amplitude in frequencies between 220-230 and 230-240 Hz.
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Affiliation(s)
- Mauro Granado
- Instituto de Física de La Plata (IFLP), Universidad Nacional de La Plata, CONICET CCT-La Plata, Diagonal 113 entre 63 y 64, La Plata 1900, Buenos Aires, Argentina
| | - Santiago Collavini
- Instituto de Electrónica Industrial, Control y Procesamiento de Se nales (LEICI), Facultad de Ingeniería, Universidad Nacional de La Plata (UNLP-CONICET), La Plata 1900, Buenos Aires, Argentina
| | - Roman Baravalle
- Instituto de Física de La Plata (IFLP), Universidad Nacional de La Plata, CONICET CCT-La Plata, Diagonal 113 entre 63 y 64, La Plata 1900, Buenos Aires, Argentina
| | - Nataniel Martinez
- Instituto de Física de Mar del Plata, Universidad Nacional de Mar del Plata & CONICET, Mar del Plata 7600, Buenos Aires, Argentina
| | - Marcelo A Montemurro
- School of Mathematics & Statistics, Faculty of Science, Technology, Engineering & Mathematics, The Open University, Walton Hall, Milton Keynes MK7 6AA, United Kingdom
| | - Osvaldo A Rosso
- Instituto de Física de La Plata (IFLP), Universidad Nacional de La Plata, CONICET CCT-La Plata, Diagonal 113 entre 63 y 64, La Plata 1900, Buenos Aires, Argentina
| | - Fernando Montani
- Instituto de Física de La Plata (IFLP), Universidad Nacional de La Plata, CONICET CCT-La Plata, Diagonal 113 entre 63 y 64, La Plata 1900, Buenos Aires, Argentina
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Radmanesh M, Rezaei AA, Jalili M, Hashemi A, Goudarzi MM. Online spike sorting via deep contractive autoencoder. Neural Netw 2022; 155:39-49. [DOI: 10.1016/j.neunet.2022.08.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Revised: 07/03/2022] [Accepted: 08/01/2022] [Indexed: 11/16/2022]
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Yoo HB, Umbach G, Lega B. Neurons in the human medial temporal lobe track multiple temporal contexts during episodic memory processing. Neuroimage 2021; 245:118689. [PMID: 34742943 PMCID: PMC8802214 DOI: 10.1016/j.neuroimage.2021.118689] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 10/23/2021] [Accepted: 10/28/2021] [Indexed: 01/04/2023] Open
Abstract
Episodic memory requires associating items with temporal context, a process for which the medial temporal lobe (MTL) is critical. This study uses recordings from 27 human subjects who were undergoing surgical intervention for intractable epilepsy. These same data were also utilized in Umbach et al. (2020). We identify 103 memory-sensitive neurons in the hippocampus and entorhinal cortex, whose firing rates predicted successful episodic memory encoding as subjects performed a verbal free recall task. These neurons exhibit important properties. First, as predicted from the temporal context model, they demonstrate reinstatement of firing patterns observed during encoding at the time of retrieval. The magnitude of reinstatement predicted the tendency of subjects to cluster retrieved memory items according to input serial position. Also, we found that spiking activity of these neurons was locked to the phase of hippocampal theta oscillations, but that the mean phase of spiking shifted between memory encoding versus retrieval. This unique observation is consistent with predictions of the “Separate Phases at Encoding And Retrieval (SPEAR)” model. Together, the properties we identify for memory-sensitive neurons characterize direct electrophysiological mechanisms for the representation of contextual information in the human MTL.
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Affiliation(s)
- Hye Bin Yoo
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, TX 75390, USA
| | - Gray Umbach
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, TX 75390, USA
| | - Bradley Lega
- Department of Neurological Surgery, University of Texas Southwestern, Dallas, TX 75390, USA.
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Measuring Synchronization between Spikes and Local Field Potential Based on the Kullback-Leibler Divergence. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2021; 2021:9954302. [PMID: 34539774 PMCID: PMC8448606 DOI: 10.1155/2021/9954302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Revised: 07/26/2021] [Accepted: 09/01/2021] [Indexed: 11/17/2022]
Abstract
Neurophysiological studies have shown that there is a close relationship between spikes and local field potential (LFP), which reflects crucial neural coding information. In this paper, we used a new method to evaluate the synchronization between spikes and LFP. All possible phases of LFP from −π to π were first binned into a freely chosen number of bins; then, the probability of spikes falling in each bin was calculated, and the deviation degree from the uniform distribution based on the Kullback–Leibler divergence was calculated to define the synchronization between spikes and LFP. The simulation results demonstrate that the method is rapid, basically unaffected by the total number of spikes, and can adequately resist the noise of spike trains. We applied this method to the experimental data of patients with intractable epilepsy, and we observed the synchronization between spikes and LFP in the formation of memory. These results show that our proposed method is a powerful tool that can quantitatively measure the synchronization between spikes and LFP.
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Quian Quiroga R. No Pattern Separation in the Human Hippocampus. Trends Cogn Sci 2020; 24:994-1007. [DOI: 10.1016/j.tics.2020.09.012] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 09/28/2020] [Accepted: 09/28/2020] [Indexed: 11/26/2022]
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10
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Sanchez-Alonso S, Aslin RN. Predictive modeling of neurobehavioral state and trait variation across development. Dev Cogn Neurosci 2020; 45:100855. [PMID: 32942148 PMCID: PMC7501421 DOI: 10.1016/j.dcn.2020.100855] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 08/26/2020] [Accepted: 09/04/2020] [Indexed: 11/24/2022] Open
Abstract
A key goal of human neurodevelopmental research is to map neural and behavioral trajectories across both health and disease. A growing number of developmental consortia have begun to address this gap by providing open access to cross-sectional and longitudinal 'big data' repositories. However, it remains challenging to develop models that enable prediction of both within-subject and between-subject neurodevelopmental variation. Here, we present a conceptual and analytical perspective of two essential ingredients for mapping neurodevelopmental trajectories: state and trait components of variance. We focus on mapping variation across a range of neural and behavioral measurements and consider concurrent alterations of state and trait variation across development. We present a quantitative framework for combining both state- and trait-specific sources of neurobehavioral variation across development. Specifically, we argue that non-linear mixed growth models that leverage state and trait components of variance and consider environmental factors are necessary to comprehensively map brain-behavior relationships. We discuss this framework in the context of mapping language neurodevelopmental changes in early childhood, with an emphasis on measures of functional connectivity and their reliability for establishing robust neurobehavioral relationships. The ultimate goal is to statistically unravel developmental trajectories of neurobehavioral relationships that involve a combination of individual differences and age-related changes.
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Katz CN, Patel K, Talakoub O, Groppe D, Hoffman K, Valiante TA. Differential Generation of Saccade, Fixation, and Image-Onset Event-Related Potentials in the Human Mesial Temporal Lobe. Cereb Cortex 2020; 30:5502-5516. [PMID: 32494805 PMCID: PMC7472212 DOI: 10.1093/cercor/bhaa132] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Revised: 04/17/2020] [Accepted: 04/21/2020] [Indexed: 11/23/2022] Open
Abstract
Event-related potentials (ERPs) are a commonly used electrophysiological signature for studying mesial temporal lobe (MTL) function during visual memory tasks. The ERPs associated with the onset of visual stimuli (image-onset) and eye movements (saccades and fixations) provide insights into the mechanisms of their generation. We hypothesized that since eye movements and image-onset provide MTL structures with salient visual information, perhaps they both engage similar neural mechanisms. To explore this question, we used intracranial electroencephalographic data from the MTLs of 11 patients with medically refractory epilepsy who participated in a visual search task. We characterized the electrophysiological responses of MTL structures to saccades, fixations, and image-onset. We demonstrated that the image-onset response is an evoked/additive response with a low-frequency power increase. In contrast, ERPs following eye movements appeared to arise from phase resetting of higher frequencies than the image-onset ERP. Intriguingly, this reset was associated with saccade onset and not termination (fixation), suggesting it is likely the MTL response to a corollary discharge, rather than a response to visual stimulation. We discuss the distinct mechanistic underpinnings of these responses which shed light on the underlying neural circuitry involved in visual memory processing.
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Affiliation(s)
- Chaim N Katz
- Krembil Research Institute, Toronto Western Hospital, Toronto, ON M5T 1M8, Canada.,Institute of Biomaterials and Biomedical Engineering, University of Toronto, Toronto, ON M5S 3G9, Canada
| | - Kramay Patel
- Krembil Research Institute, Toronto Western Hospital, Toronto, ON M5T 1M8, Canada.,Institute of Biomaterials and Biomedical Engineering, University of Toronto, Toronto, ON M5S 3G9, Canada.,Faculty of Medicine, University of Toronto, Toronto, ON M5S 1A8, Canada
| | - Omid Talakoub
- Krembil Research Institute, Toronto Western Hospital, Toronto, ON M5T 1M8, Canada.,Department of Psychology, Vanderbilt University, Nashville, TN 37240, USA
| | - David Groppe
- Krembil Research Institute, Toronto Western Hospital, Toronto, ON M5T 1M8, Canada
| | - Kari Hoffman
- Department of Psychology, Vanderbilt University, Nashville, TN 37240, USA
| | - Taufik A Valiante
- Krembil Research Institute, Toronto Western Hospital, Toronto, ON M5T 1M8, Canada.,Institute of Biomaterials and Biomedical Engineering, University of Toronto, Toronto, ON M5S 3G9, Canada.,Division of Neurosurgery, Department of Surgery, University of Toronto, Toronto, ON M5S 1A1, Canada.,Institute of Medical Sciences, University of Toronto, Toronto, ON M5S 1A8, Canada.,Electrical and Computer Engineering, University of Toronto, Toronto, ON M5S 3G4, Canada
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12
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Rey HG, Gori B, Chaure FJ, Collavini S, Blenkmann AO, Seoane P, Seoane E, Kochen S, Quian Quiroga R. Single Neuron Coding of Identity in the Human Hippocampal Formation. Curr Biol 2020; 30:1152-1159.e3. [PMID: 32142694 PMCID: PMC7103760 DOI: 10.1016/j.cub.2020.01.035] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2019] [Revised: 12/14/2019] [Accepted: 01/10/2020] [Indexed: 11/12/2022]
Abstract
Experimental findings show the ubiquitous presence of graded responses and tuning curves in the neocortex, particularly in visual areas [1-15]. Among these, inferotemporal-cortex (IT) neurons respond to complex visual stimuli, but differences in the neurons' responses can be used to distinguish the stimuli eliciting the responses [8, 9, 16-18]. The IT projects directly to the medial temporal lobe (MTL) [19], where neurons respond selectively to different pictures of specific persons and even to their written and spoken names [20-22]. However, it is not clear whether this is done through a graded coding, as in the neocortex, or a truly invariant code, in which the response-eliciting stimuli cannot be distinguished from each other. To address this issue, we recorded single neurons during the repeated presentation of different stimuli (pictures and written and spoken names) corresponding to the same persons. Using statistical tests and a decoding approach, we found that only in a minority of cases can the different pictures of a given person be distinguished from the neurons' responses and that in a larger proportion of cases, the responses to the pictures were different to the ones to the written and spoken names. We argue that MTL neurons tend to lack a representation of sensory features (particularly within a sensory modality), which can be advantageous for the memory function attributed to this area [23-25], and that a full representation of memories is given by a combination of mostly invariant coding in the MTL with a representation of sensory features in the neocortex.
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Affiliation(s)
- Hernan G Rey
- Centre for Systems Neuroscience, University of Leicester, 15 Lancaster Rd, Leicester LE1 7HA, UK
| | - Belen Gori
- Neurosciences and Complex Systems Unit (EnyS), CONICET, Hospital El Cruce "Nestor Kirchner", Universidad National Arturo Jauretche (UNAJ), Av. Calchaquí 5401, Buenos Aires 1888, Argentina
| | - Fernando J Chaure
- Centre for Systems Neuroscience, University of Leicester, 15 Lancaster Rd, Leicester LE1 7HA, UK; Neurosciences and Complex Systems Unit (EnyS), CONICET, Hospital El Cruce "Nestor Kirchner", Universidad National Arturo Jauretche (UNAJ), Av. Calchaquí 5401, Buenos Aires 1888, Argentina; Institute of Biomedical Engineering, University of Buenos Aires, Paseo Colon 850, Buenos Aires 1063, Argentina
| | - Santiago Collavini
- Neurosciences and Complex Systems Unit (EnyS), CONICET, Hospital El Cruce "Nestor Kirchner", Universidad National Arturo Jauretche (UNAJ), Av. Calchaquí 5401, Buenos Aires 1888, Argentina; Institute of Electronics, Control and Signal Processing (LEICI), University of La Plata, Calle 116 s/n, La Plata B1900, Argentina
| | - Alejandro O Blenkmann
- Neurosciences and Complex Systems Unit (EnyS), CONICET, Hospital El Cruce "Nestor Kirchner", Universidad National Arturo Jauretche (UNAJ), Av. Calchaquí 5401, Buenos Aires 1888, Argentina
| | - Pablo Seoane
- Neurosciences and Complex Systems Unit (EnyS), CONICET, Hospital El Cruce "Nestor Kirchner", Universidad National Arturo Jauretche (UNAJ), Av. Calchaquí 5401, Buenos Aires 1888, Argentina
| | - Eduardo Seoane
- Neurosciences and Complex Systems Unit (EnyS), CONICET, Hospital El Cruce "Nestor Kirchner", Universidad National Arturo Jauretche (UNAJ), Av. Calchaquí 5401, Buenos Aires 1888, Argentina
| | - Silvia Kochen
- Neurosciences and Complex Systems Unit (EnyS), CONICET, Hospital El Cruce "Nestor Kirchner", Universidad National Arturo Jauretche (UNAJ), Av. Calchaquí 5401, Buenos Aires 1888, Argentina
| | - Rodrigo Quian Quiroga
- Centre for Systems Neuroscience, University of Leicester, 15 Lancaster Rd, Leicester LE1 7HA, UK.
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13
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Rossion B, Taubert J. What can we learn about human individual face recognition from experimental studies in monkeys? Vision Res 2019; 157:142-158. [DOI: 10.1016/j.visres.2018.03.012] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2017] [Revised: 03/22/2018] [Accepted: 03/29/2018] [Indexed: 10/28/2022]
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14
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Akakhievitch revisited: Comment on "The unreasonable effectiveness of small neural ensembles in high-dimensional brain" by Alexander N. Gorban et al. Phys Life Rev 2019; 29:111-114. [PMID: 30898476 DOI: 10.1016/j.plrev.2019.02.014] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Accepted: 02/27/2019] [Indexed: 11/24/2022]
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15
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Rolls ET, Wirth S. Spatial representations in the primate hippocampus, and their functions in memory and navigation. Prog Neurobiol 2018; 171:90-113. [DOI: 10.1016/j.pneurobio.2018.09.004] [Citation(s) in RCA: 59] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2018] [Revised: 09/10/2018] [Accepted: 09/10/2018] [Indexed: 01/01/2023]
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16
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Ghaderi P, Marateb HR, Safari MS. Electrophysiological Profiling of Neocortical Neural Subtypes: A Semi-Supervised Method Applied to in vivo Whole-Cell Patch-Clamp Data. Front Neurosci 2018; 12:823. [PMID: 30542256 PMCID: PMC6277855 DOI: 10.3389/fnins.2018.00823] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Accepted: 10/22/2018] [Indexed: 12/30/2022] Open
Abstract
A lot of efforts have been made to understand the structure and function of neocortical circuits. In fact, a promising way to understand the functions of cortical circuits is the classification of the neural types, based on their different properties. Recent studies focused on applying modern computational methods to classify neurons based on molecular, morphological, physiological, or mixed of these criteria. Although there are studies in the literature on in vitro/vivo extracellular or in vitro intracellular recordings, a study on the classification of neuronal types using in vivo whole-cell patch-clamp recordings is still lacking. We thus proposed a novel semi-supervised classification method based on waveform shape of neurons' spikes using in vivo whole-cell patch-clamp recordings. We, first, detected spike candidates. Then discriminative features were extracted from the time samples of the spikes using discrete cosine transform. We then extracted the center of clusters using fuzzy c-mean clustering and finally, the neurons were classified using the minimum distance classifier. We distinguished three types of neurons: excitatory pyramidal cells (Pyr) and two types of inhibitory neurons: GABAergic- parvalbumin positive (PV), and somatostatin positive (SST) non-pyramidal cells in layer II/III of the mice primary visual cortex. We used 10-fold cross validation in our study. The classification accuracy for PV, Pyr, and SST was 91.59 ± 1.69, 97.47 ± 0.67, and 89.06 ± 1.99, respectively. Overall, the algorithm correctly classified 92.67 ± 0.54% of the cells, confirming the relative robustness of the discriminant functions. The performance of the method was further assessed on in vitro recordings by using a pool of 50 neurons from Allen institute Cell Types Database (5 major subtypes of neurons: Pyr, PV, SST, 5HT3a, and vasoactive intestinal peptide (VIP) cells). Its overall accuracy was 84.13 ± 0.81% on this data set using cross validation framework. The proposed algorithm is thus a promising new tool in recognizing cell's type with high accuracy in laboratories using in vivo/vitro whole-cell patch-clamp recording technique. The developed programs and the entire dataset are available online to interested readers.
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Affiliation(s)
- Parviz Ghaderi
- Neuroscience Research Center, Shahid Beheshti University of Medical Science, Tehran, Iran
| | - Hamid Reza Marateb
- Biomedical Engineering Department, Engineering Faculty, University of Isfahan, Isfahan, Iran
| | - Mir-Shahram Safari
- Neuroscience Research Center, Shahid Beheshti University of Medical Science, Tehran, Iran.,Brain Science Institute, RIKEN, Wako, Japan.,Brain Future Institute, Tehran, Iran
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Rey HG, De Falco E, Ison MJ, Valentin A, Alarcon G, Selway R, Richardson MP, Quian Quiroga R. Encoding of long-term associations through neural unitization in the human medial temporal lobe. Nat Commun 2018; 9:4372. [PMID: 30348996 PMCID: PMC6197188 DOI: 10.1038/s41467-018-06870-2] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Accepted: 09/29/2018] [Indexed: 12/25/2022] Open
Abstract
Besides decades of research showing the role of the medial temporal lobe (MTL) in memory and the encoding of associations, the neural substrates underlying these functions remain unknown. We identified single neurons in the human MTL that responded to multiple and, in most cases, associated stimuli. We observed that most of these neurons exhibit no differences in their spike and local field potential (LFP) activity associated with the individual response-eliciting stimuli. In addition, LFP responses in the theta band preceded single neuron responses by ~70 ms, with the single trial phase providing fine tuning of the spike response onset. We postulate that the finding of similar neuronal responses to associated items provides a simple and flexible way of encoding memories in the human MTL, increasing the effective capacity for memory storage and successful retrieval. In this work, the authors recorded single neurons and field potentials from the human medial temporal lobe (MTL) and show indistinguishable responses to associated stimuli. This coding mechanism provides a simple and flexible way of encoding memories in the human MTL.
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Affiliation(s)
- Hernan G Rey
- Centre for Systems Neuroscience, University of Leicester, Leicester, LE1 7RH, UK
| | - Emanuela De Falco
- Centre for Systems Neuroscience, University of Leicester, Leicester, LE1 7RH, UK
| | - Matias J Ison
- Centre for Systems Neuroscience, University of Leicester, Leicester, LE1 7RH, UK.,School of Psychology, University of Nottingham, Nottingham, NG7 2RD, UK
| | - Antonio Valentin
- Division of Neuroscience, Institute of Psychiatry Psychology and Neuroscience, King's College London, London, SE5 8AF, UK.,Department of Clinical Neurophysiology, King's College Hospital NHS Trust, London, SE5 9RS, UK
| | - Gonzalo Alarcon
- Division of Neuroscience, Institute of Psychiatry Psychology and Neuroscience, King's College London, London, SE5 8AF, UK.,Department of Clinical Neurophysiology, King's College Hospital NHS Trust, London, SE5 9RS, UK.,Comprehensive Epilepsy Center, Neuroscience Institute, Academic Health Systems, Hamad Medical Corporation, Doha, PO Box 3050, Qatar
| | - Richard Selway
- Department of Neurosurgery, King's College Hospital NHS Trust, London, SE5 9RS, UK
| | - Mark P Richardson
- Division of Neuroscience, Institute of Psychiatry Psychology and Neuroscience, King's College London, London, SE5 8AF, UK
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18
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Chaure FJ, Rey HG, Quian Quiroga R. A novel and fully automatic spike-sorting implementation with variable number of features. J Neurophysiol 2018; 120:1859-1871. [PMID: 29995603 PMCID: PMC6230803 DOI: 10.1152/jn.00339.2018] [Citation(s) in RCA: 92] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Revised: 07/06/2018] [Accepted: 07/09/2018] [Indexed: 11/22/2022] Open
Abstract
The most widely used spike-sorting algorithms are semiautomatic in practice, requiring manual tuning of the automatic solution to achieve good performance. In this work, we propose a new fully automatic spike-sorting algorithm that can capture multiple clusters of different sizes and densities. In addition, we introduce an improved feature selection method, by using a variable number of wavelet coefficients, based on the degree of non-Gaussianity of their distributions. We evaluated the performance of the proposed algorithm with real and simulated data. With real data from single-channel recordings, in ~95% of the cases the new algorithm replicated, in an unsupervised way, the solutions obtained by expert sorters, who manually optimized the solution of a previous semiautomatic algorithm. This was done while maintaining a low number of false positives. With simulated data from single-channel and tetrode recordings, the new algorithm was able to correctly detect many more neurons compared with previous implementations and also compared with recently introduced algorithms, while significantly reducing the number of false positives. In addition, the proposed algorithm showed good performance when tested with real tetrode recordings. NEW & NOTEWORTHY We propose a new fully automatic spike-sorting algorithm, including several steps that allow the selection of multiple clusters of different sizes and densities. Moreover, it defines the dimensionality of the feature space in an unsupervised way. We evaluated the performance of the algorithm with real and simulated data, from both single-channel and tetrode recordings. The proposed algorithm was able to outperform manual sorting from experts and other recent unsupervised algorithms.
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Affiliation(s)
- Fernando J Chaure
- Centre for Systems Neuroscience, University of Leicester , Leicester , United Kingdom
- Instituto de Ingeniería Biomédica, UBA, Buenos Aires , Argentina
- Estudios de Neurociencias y Sistemas Complejos (ENYS), CONICET - Hospital El Cruce - UNAJ, Florencio Varela, Argentina
- Instituto de Biología Celular y Neurociencias "Prof. E. De Robertis", Facultad de Medicina, UBA, Buenos Aires , Argentina
| | - Hernan G Rey
- Centre for Systems Neuroscience, University of Leicester , Leicester , United Kingdom
| | - Rodrigo Quian Quiroga
- Centre for Systems Neuroscience, University of Leicester , Leicester , United Kingdom
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19
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Rolls ET. The storage and recall of memories in the hippocampo-cortical system. Cell Tissue Res 2018; 373:577-604. [PMID: 29218403 PMCID: PMC6132650 DOI: 10.1007/s00441-017-2744-3] [Citation(s) in RCA: 107] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Accepted: 11/12/2017] [Indexed: 02/07/2023]
Abstract
A quantitative computational theory of the operation of the hippocampus as an episodic memory system is described. The CA3 system operates as a single attractor or autoassociation network (1) to enable rapid one-trial associations between any spatial location (place in rodents or spatial view in primates) and an object or reward and (2) to provide for completion of the whole memory during recall from any part. The theory is extended to associations between time and object or reward to implement temporal order memory, which is also important in episodic memory. The dentate gyrus performs pattern separation by competitive learning to create sparse representations producing, for example, neurons with place-like fields from entorhinal cortex grid cells. The dentate granule cells generate, by the very small number of mossy fibre connections to CA3, a randomizing pattern separation effect that is important during learning but not recall and that separates out the patterns represented by CA3 firing as being very different from each other. This is optimal for an unstructured episodic memory system in which each memory must be kept distinct from other memories. The direct perforant path input to CA3 is quantitatively appropriate for providing the cue for recall in CA3 but not for learning. The CA1 recodes information from CA3 to set up associatively learned backprojections to the neocortex to allow the subsequent retrieval of information to the neocortex, giving a quantitative account of the large number of hippocampo-neocortical and neocortical-neocortical backprojections. Tests of the theory including hippocampal subregion analyses and hippocampal NMDA receptor knockouts are described and support the theory.
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Affiliation(s)
- Edmund T Rolls
- Oxford Centre for Computational Neuroscience, Oxford, England.
- Department of Computer Science, University of Warwick, Coventry, England.
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20
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Dimitriadis G, Neto JP, Kampff AR. t-SNE Visualization of Large-Scale Neural Recordings. Neural Comput 2018; 30:1750-1774. [PMID: 29894653 DOI: 10.1162/neco_a_01097] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Electrophysiology is entering the era of big data. Multiple probes, each with hundreds to thousands of individual electrodes, are now capable of simultaneously recording from many brain regions. The major challenge confronting these new technologies is transforming the raw data into physiologically meaningful signals, that is, single unit spikes. Sorting the spike events of individual neurons from a spatiotemporally dense sampling of the extracellular electric field is a problem that has attracted much attention (Rey, Pedreira, & Quian Quiroga, 2015 ; Rossant et al., 2016 ) but is still far from solved. Current methods still rely on human input and thus become unfeasible as the size of the data sets grows exponentially. Here we introduce the [Formula: see text]-student stochastic neighbor embedding (t-SNE) dimensionality reduction method (Van der Maaten & Hinton, 2008 ) as a visualization tool in the spike sorting process. t-SNE embeds the [Formula: see text]-dimensional extracellular spikes ([Formula: see text] = number of features by which each spike is decomposed) into a low- (usually two-) dimensional space. We show that such embeddings, even starting from different feature spaces, form obvious clusters of spikes that can be easily visualized and manually delineated with a high degree of precision. We propose that these clusters represent single units and test this assertion by applying our algorithm on labeled data sets from both hybrid (Rossant et al., 2016 ) and paired juxtacellular/extracellular recordings (Neto et al., 2016 ). We have released a graphical user interface (GUI) written in Python as a tool for the manual clustering of the t-SNE embedded spikes and as a tool for an informed overview and fast manual curation of results from different clustering algorithms. Furthermore, the generated visualizations offer evidence in favor of the use of probes with higher density and smaller electrodes. They also graphically demonstrate the diverse nature of the sorting problem when spikes are recorded with different methods and arise from regions with different background spiking statistics.
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Affiliation(s)
| | - Joana P Neto
- Sainsbury Wellcome Centre, UCL, London W1T 4JG, U.K.
| | - Adam R Kampff
- Sainsbury Wellcome Centre, UCL, London W1T 4JG, U.K.
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21
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Zamani M, Jiang D, Demosthenous A. An Adaptive Neural Spike Processor With Embedded Active Learning for Improved Unsupervised Sorting Accuracy. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2018; 12:665-676. [PMID: 29877829 DOI: 10.1109/tbcas.2018.2825421] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
There is a need for integrated spike sorting processors in implantable devices with low power consumption that have improved accuracy. Learning the characteristics of the variable input neural signals and adapting the functionality of the sorting process can improve the accuracy. An adaptive spike sorting processor is presented accounting for the variation in the input signal noise characteristics and the variable difficulty in the selection of the spike characteristics, which significantly improves the accuracy. The adaptive spike processor was fabricated in 180-nm CMOS technology for proof of concept. It performs conditional detection, alignment, adaptive feature extraction, and online clustering with sorting threshold self-tuning capability. The chip was tested under different input signal conditions to demonstrate its adaptation capability providing a median classification accuracy of 84.5% and consuming 148 μW from a 1.8 V supply voltage.
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22
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Extracting information from the shape and spatial distribution of evoked potentials. J Neurosci Methods 2018; 296:12-22. [PMID: 29277720 PMCID: PMC5840508 DOI: 10.1016/j.jneumeth.2017.12.014] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2017] [Revised: 12/19/2017] [Accepted: 12/21/2017] [Indexed: 02/08/2023]
Abstract
A decoding approach for extracting and quantifying information from ERPs is proposed. The proposed framework extracts more information than standard supervised approaches. The method allows analysis of multichannel signals.
Background Over 90 years after its first recording, scalp electroencephalography (EEG) remains one of the most widely used techniques in human neuroscience research, in particular for the study of event-related potentials (ERPs). However, because of its low signal-to-noise ratio, extracting useful information from these signals continues to be a hard-technical challenge. Many studies focus on simple properties of the ERPs such as peaks, latencies, and slopes of signal deflections. New method To overcome these limitations, we developed the Wavelet-Information method which uses wavelet decomposition, information theory, and a quantification based on single-trial decoding performance to extract information from evoked responses. Results Using simulations and real data from four experiments, we show that the proposed approach outperforms standard supervised analyses based on peak amplitude estimation. Moreover, the method can extract information using the raw data from all recorded channels using no a priori knowledge or pre-processing steps. Comparison with existing method(s) We show that traditional approaches often disregard important features of the signal such as the shape of EEG waveforms. Also, other approaches often require some form of a priori knowledge for feature selection and lead to problems of multiple comparisons. Conclusions This approach offers a new and complementary framework to design experiments that go beyond the traditional analyses of ERPs. Potentially, it allows a wide usage beyond basic research; such as for clinical diagnosis, brain-machine interfaces, and neurofeedback applications requiring single-trial analyses.
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Knieling S, Niediek J, Kutter E, Bostroem J, Elger CE, Mormann F. An online adaptive screening procedure for selective neuronal responses. J Neurosci Methods 2017; 291:36-42. [PMID: 28826654 DOI: 10.1016/j.jneumeth.2017.08.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2017] [Revised: 08/01/2017] [Accepted: 08/02/2017] [Indexed: 11/30/2022]
Abstract
BACKGROUND A common problem in neurophysiology is to identify stimuli that elicit neuronal responses in a given brain region. Particularly in situations where electrode positions are fixed, this can be a time-consuming task that requires presentation of a large number of stimuli. Such a screening for response-eliciting stimuli is employed, e.g., as a standard procedure to identify 'concept cells' in the human medial temporal lobe. NEW METHOD Our new method evaluates neuronal responses to stimuli online during a screening session, which allows us to successively exclude stimuli that do not evoke a response. Using this method, we can screen a larger number of stimuli which in turn increases the chances of finding responsive neurons and renders time-consuming offline analysis unnecessary. RESULTS Our method enabled us to present 30% more stimuli in the same period of time with additional presentations of the most promising candidate stimuli. Our online method ran smoothly on a standard computer and network. COMPARISON WITH AN EXISTING METHOD To analyze how our online screening procedure performs in comparison to an established offline method, we used the Wave_Clus software package. We did not observe any major drawbacks in our method, but a much higher efficiency and analysis speed. CONCLUSIONS By transitioning from a traditional offline screening procedure to our new online method, we substantially increased the number of visual stimuli presented in a given time period. This allows to identify more response-eliciting stimuli, which forms the basis to better address a great number of questions in cognitive neuroscience.
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Affiliation(s)
- S Knieling
- Dept. of Epileptology, University of Bonn, Germany
| | - J Niediek
- Dept. of Epileptology, University of Bonn, Germany
| | - E Kutter
- Dept. of Epileptology, University of Bonn, Germany
| | - J Bostroem
- Dept. of Neurosurgery, University of Bonn, Germany
| | - C E Elger
- Dept. of Epileptology, University of Bonn, Germany
| | - F Mormann
- Dept. of Epileptology, University of Bonn, Germany.
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Rolls ET, Deco G. Non-reward neural mechanisms in the orbitofrontal cortex. Cortex 2016; 83:27-38. [PMID: 27474915 DOI: 10.1080/23273798.2016.1203443] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2016] [Revised: 05/03/2016] [Accepted: 06/24/2016] [Indexed: 05/27/2023]
Abstract
Single neurons in the primate orbitofrontal cortex respond when an expected reward is not obtained, and behaviour must change. The human lateral orbitofrontal cortex is activated when non-reward, or loss occurs. The neuronal computation of this negative reward prediction error is fundamental for the emotional changes associated with non-reward, and with changing behaviour. Little is known about the neuronal mechanism. Here we propose a mechanism, which we formalize into a neuronal network model, which is simulated to enable the operation of the mechanism to be investigated. A single attractor network has a reward population (or pool) of neurons that is activated by expected reward, and maintain their firing until, after a time, synaptic depression reduces the firing rate in this neuronal population. If a reward outcome is not received, the decreasing firing in the reward neurons releases the inhibition implemented by inhibitory neurons, and this results in a second population of non-reward neurons to start and continue firing encouraged by the spiking-related noise in the network. If a reward outcome is received, this keeps the reward attractor active, and this through the inhibitory neurons prevents the non-reward attractor neurons from being activated. If an expected reward has been signalled, and the reward attractor neurons are active, their firing can be directly inhibited by a non-reward outcome, and the non-reward neurons become activated because the inhibition on them is released. The neuronal mechanisms in the orbitofrontal cortex for computing negative reward prediction error are important, for this system may be over-reactive in depression, under-reactive in impulsive behaviour, and may influence the dopaminergic 'prediction error' neurons.
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Affiliation(s)
- Edmund T Rolls
- Oxford Centre for Computational Neuroscience, Oxford, UK; University of Warwick, Department of Computer Science, Coventry, UK. http://www.oxcns.org
| | - Gustavo Deco
- Universitat Pompeu Fabra, Theoretical and Computational Neuroscience, Barcelona, Spain; Institucio Catalana de Recerca i Estudis Avancats (ICREA), Spain
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Harris KD, Quian Quiroga R, Freeman J, Smith S. Improving data quality in neuronal population recordings. Nat Neurosci 2016; 19:1165-74. [PMID: 27571195 PMCID: PMC5244825 DOI: 10.1038/nn.4365] [Citation(s) in RCA: 131] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2016] [Accepted: 07/20/2016] [Indexed: 12/12/2022]
Abstract
Understanding how the brain operates requires understanding how large sets of neurons function together. Modern recording technology makes it possible to simultaneously record the activity of hundreds of neurons, and technological developments will soon allow recording of thousands or tens of thousands. As with all experimental techniques, these methods are subject to confounds that complicate the interpretation of such recordings, and could lead to erroneous scientific conclusions. Here we discuss methods for assessing and improving the quality of data from these techniques and outline likely future directions in this field.
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Affiliation(s)
- Kenneth D. Harris
- UCL Institute of Neurology, University College London, Queen Square, London WC1N 3BG, UK
- UCL Department of Neuroscience, Physiology and Pharmacology, University College London, 21 University Street, London WC1E 6DE, UK
| | | | - Jeremy Freeman
- Howard Hughes Medical Institute, Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147, USA
| | - Spencer Smith
- Department of Cell Biology and Physiology, UNC School of Medicine, Chapel Hill NC 27599, USA
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Quian Quiroga R. Neuronal codes for visual perception and memory. Neuropsychologia 2015; 83:227-241. [PMID: 26707718 DOI: 10.1016/j.neuropsychologia.2015.12.016] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2015] [Revised: 12/08/2015] [Accepted: 12/17/2015] [Indexed: 11/18/2022]
Abstract
In this review, I describe and contrast the representation of stimuli in visual cortical areas and in the medial temporal lobe (MTL). While cortex is characterized by a distributed and implicit coding that is optimal for recognition and storage of semantic information, the MTL shows a much sparser and explicit coding of specific concepts that is ideal for episodic memory. I will describe the main characteristics of the coding in the MTL by the so-called concept cells and will then propose a model of the formation and recall of episodic memory based on partially overlapping assemblies.
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Affiliation(s)
- Rodrigo Quian Quiroga
- Centre for Systems Neuroscience, University of Leicester, 9 Salisbury Rd, LE1 7QR Leicester, UK.
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27
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Rey HG, Pedreira C, Quian Quiroga R. Past, present and future of spike sorting techniques. Brain Res Bull 2015; 119:106-17. [PMID: 25931392 PMCID: PMC4674014 DOI: 10.1016/j.brainresbull.2015.04.007] [Citation(s) in RCA: 199] [Impact Index Per Article: 22.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2015] [Accepted: 04/19/2015] [Indexed: 11/19/2022]
Abstract
Spike sorting is a crucial step to extract information from extracellular recordings. With new recording opportunities provided by the development of new electrodes that allow monitoring hundreds of neurons simultaneously, the scenario for the new generation of algorithms is both exciting and challenging. However, this will require a new approach to the problem and the development of a common reference framework to quickly assess the performance of new algorithms. In this work, we review the basic concepts of spike sorting, including the requirements for different applications, together with the problems faced by presently available algorithms. We conclude by proposing a roadmap stressing the crucial points to be addressed to support the neuroscientific research of the near future.
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Affiliation(s)
- Hernan Gonzalo Rey
- Centre for Systems Neuroscience, University of Leicester, 9 Salisbury Road, Leicester LE1 7QR, UK
| | - Carlos Pedreira
- Department of Experimental Psychology, University of Oxford, Tinbergen Building, 9 South Parks Road, Oxford OX1 3UD, UK
| | - Rodrigo Quian Quiroga
- Centre for Systems Neuroscience, University of Leicester, 9 Salisbury Road, Leicester LE1 7QR, UK.
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29
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Rey HG, Ahmadi M, Quian Quiroga R. Single trial analysis of field potentials in perception, learning and memory. Curr Opin Neurobiol 2015; 31:148-55. [DOI: 10.1016/j.conb.2014.10.009] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2014] [Revised: 10/17/2014] [Accepted: 10/19/2014] [Indexed: 11/30/2022]
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