1
|
Hekimoğlu O. Phylogenetic placement of Turkish populations of Ixodes ricinus and Ixodes inopinatus. EXPERIMENTAL & APPLIED ACAROLOGY 2022; 88:179-189. [PMID: 36251170 DOI: 10.1007/s10493-022-00750-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Accepted: 10/08/2022] [Indexed: 06/16/2023]
Abstract
Studies on phylogeography and population structure of Ixodes ricinus have been carried out in Europe for decades, but the number of specimens from the Middle East included in these analyses is relatively small, despite the wide distribution of the species in this area. This study aimed to clarify the phylogenetic positions of I. ricinus from Turkey as well as to investigate the presence of Ixodes inopinatus in Anatolia. For this purpose, one mitochondrial (mt 16S rDNA) and one nuclear gene (defensin) were used to generate molecular data from I. ricinus samples, which were collected from 17 locations across the species' distributional range in Turkey. Bayesian inference was used to investigate phylogenetic relationships. Globally, the mt 16S rDNA lineages correspond to the lineages revealed by defensin; I. ricinus and I. inopinatus sequences clustered separately. However, a discordant genetic pattern was observed between the phylogenetic position of turkish I. ricinus revealed by nuclear versus mitochondrial genes. All Turkish haplotypes of mt 16SrDNA clustered with I. ricinus samples from Europe, which might be the result of extensive gene flow between populations of Europe and the Middle East. On the other hand, a sample from Thrace Region grouped within I. inopinatus clade. Thus, the occurrence of I. inopinatus in Turkey was demonstrated for the first time using molecular data. Moreover, four individuals were found to be heterozygous for the defensin. The potential evolutionary processes that underlie this observed discrepancy between the phylogenetic trees of two genes have been discussed.
Collapse
Affiliation(s)
- Olcay Hekimoğlu
- Division of Ecology, Department of Biology, Faculty of Science, Hacettepe University, Beytepe, 06800, Ankara, Turkey.
| |
Collapse
|
2
|
Kopsco HL, Smith RL, Halsey SJ. A Scoping Review of Species Distribution Modeling Methods for Tick Vectors. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.893016] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
BackgroundGlobally, tick-borne disease is a pervasive and worsening problem that impacts human and domestic animal health, livelihoods, and numerous economies. Species distribution models are useful tools to help address these issues, but many different modeling approaches and environmental data sources exist.ObjectiveWe conducted a scoping review that examined all available research employing species distribution models to predict occurrence and map tick species to understand the diversity of model strategies, environmental predictors, tick data sources, frequency of climate projects of tick ranges, and types of model validation methods.DesignFollowing the PRISMA-ScR checklist, we searched scientific databases for eligible articles, their references, and explored related publications through a graphical tool (www.connectedpapers.com). Two independent reviewers performed article selection and characterization using a priori criteria.ResultsWe describe data collected from 107 peer-reviewed articles that met our inclusion criteria. The literature reflects that tick species distributions have been modeled predominantly in North America and Europe and have mostly modeled the habitat suitability for Ixodes ricinus (n = 23; 21.5%). A wide range of bioclimatic databases and other environmental correlates were utilized among models, but the WorldClim database and its bioclimatic variables 1–19 appeared in 60 (56%) papers. The most frequently chosen modeling approach was MaxEnt, which also appeared in 60 (56%) of papers. Despite the importance of ensemble modeling to reduce bias, only 23 papers (21.5%) employed more than one algorithm, and just six (5.6%) used an ensemble approach that incorporated at least five different modeling methods for comparison. Area under the curve/receiver operating characteristic was the most frequently reported model validation method, utilized in nearly all (98.9%) included studies. Only 21% of papers used future climate scenarios to predict tick range expansion or contraction. Regardless of the representative concentration pathway, six of seven genera were expected to both expand and retract depending on location, while Ornithodoros was predicted to only expand beyond its current range.ConclusionSpecies distribution modeling techniques are useful and widely employed tools for predicting tick habitat suitability and range movement. However, the vast array of methods, data sources, and validation strategies within the SDM literature support the need for standardized protocols for species distribution and ecological niche modeling for tick vectors.
Collapse
|
3
|
Poli P, Lenoir J, Plantard O, Ehrmann S, Røed KH, Leinaas HP, Panning M, Guiller A. Strong genetic structure among populations of the tick Ixodes ricinus across its range. Ticks Tick Borne Dis 2020; 11:101509. [PMID: 32993929 DOI: 10.1016/j.ttbdis.2020.101509] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 07/03/2020] [Accepted: 07/06/2020] [Indexed: 01/25/2023]
Abstract
Ixodes ricinus is the most common and widely distributed tick species in Europe, responsible for several zoonotic diseases, including Lyme borreliosis. Population genetics of disease vectors is a useful tool for understanding the spread of pathogens and infection risks. Despite the threat to the public health due to the climate-driven distribution changes of I. ricinus, the genetic structure of tick populations, though essential for understanding epidemiology, remains unclear. Previous studies have demonstrated weak to no apparent spatial pattern of genetic differentiation between European populations. Here, we analysed the population genetic structure of 497 individuals from 28 tick populations sampled from 20 countries across Europe, the Middle-East, and northern Africa. We analysed 125 SNPs loci after quality control. We ran Bayesian and multivariate hierarchical clustering analyses to identify and describe clusters of genetically related individuals. Both clustering methods support the identification of three spatially-structured clusters. Individuals from the south and north-western parts of Eurasia form a separated cluster from northern European populations, while central European populations are a mix between the two groups. Our findings have important implications for understanding the dispersal processes that shape the spread of zoonotic diseases under anthropogenic global changes.
Collapse
Affiliation(s)
- Pedro Poli
- Université de Picardie Jules Verne, UMR « Ecologie et Dynamique des Systèmes Anthropisés » (EDYSAN, UMR 7058 CNRS), 33 Rue Saint Leu, 80000 Amiens CEDEX 1, France.
| | - Jonathan Lenoir
- Université de Picardie Jules Verne, UMR « Ecologie et Dynamique des Systèmes Anthropisés » (EDYSAN, UMR 7058 CNRS), 33 Rue Saint Leu, 80000 Amiens CEDEX 1, France
| | | | - Steffen Ehrmann
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
| | - Knut H Røed
- Department of Basic Sciences and Aquatic Medicine, Norwegian University of Life Sciences, N-0033, Oslo, Norway
| | - Hans Petter Leinaas
- Department of Biosciences, University of Oslo, Box 1066 Blindern, N-0316 Oslo, Norway
| | - Marcus Panning
- Institute of Virology, Medical Center - University of Freiburg, Faculty of Medicine, University of Freiburg, Hermann-Herder-Str, 11 79104, Freiburg, Germany
| | - Annie Guiller
- Université de Picardie Jules Verne, UMR « Ecologie et Dynamique des Systèmes Anthropisés » (EDYSAN, UMR 7058 CNRS), 33 Rue Saint Leu, 80000 Amiens CEDEX 1, France.
| |
Collapse
|
4
|
Pajoro M, Pistone D, Varotto Boccazzi I, Mereghetti V, Bandi C, Fabbi M, Scattorin F, Sassera D, Montagna M. Molecular screening for bacterial pathogens in ticks (Ixodes ricinus) collected on migratory birds captured in northern Italy. Folia Parasitol (Praha) 2018; 65. [PMID: 29925679 DOI: 10.14411/fp.2018.008] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2017] [Accepted: 05/28/2018] [Indexed: 11/19/2022]
Abstract
Migratory birds have an important role in transporting ticks and associated tick-borne pathogens over long distances. In this study, 2,793 migratory birds were captured by nets in a ringing station, located in northern Italy, and checked for the presence of ticks. Two-hundred and fifty-one ticks were identified as nymphs and larvae of Ixodes ricinus (Linnaeus, 1758) and they were PCR-screened for the presence of bacteria belonging to Borrelia burgdorferi sensu lato, Rickettsia spp., Francisella tularensis and Coxiella burnetii. Four species of Borrelia (B. garinii, B. afzelii, B. valaisiana and B. lusitaniae) and three species of Rickettsia (R. monacensis, R. helvetica and Candidatus Rickettsia mendelii) were detected in 74 (30%) and 25 (10%) respectively out of 251 ticks examined. Co-infection with Borrelia spp. and Rickettsia spp. in the same tick sample was encountered in 7 (7%) out of the 99 infected ticks. We report for the first time the presence of Candidatus Rickettsia mendelii in I. ricinus collected on birds in Italy. This study, besides confirming the role of birds in dispersal of I. ricinus, highlights an important route by which tick-borne pathogens might spread across different countries and from natural environments towards urbanised areas.
Collapse
Affiliation(s)
- Massimo Pajoro
- Pediatric Clinical Research Center Romeo ed Enrica Invernizzi, University of Milano, Italy
| | - Dario Pistone
- University of South Bohemia, Faculty of Science, Ceske Budejovice, Czech Republic.,Department of Bioscience, University of Milano, Italy
| | | | - Valeria Mereghetti
- Department of Agricultural and Environmental Sciences, University of Milano, Italy
| | - Claudio Bandi
- Pediatric Clinical Research Center Romeo ed Enrica Invernizzi, University of Milano, Italy.,Department of Bioscience, University of Milano, Italy
| | - Massimo Fabbi
- Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emila Romagna, Pavia, Italy
| | | | - Davide Sassera
- Department of Biology and Biotechnology, University of Pavia, Italy
| | - Matteo Montagna
- Department of Agricultural and Environmental Sciences, University of Milano, Italy
| |
Collapse
|
5
|
Geng Q, Sun L, Zhang P, Wang Z, Qiu Y, Liu H, Lian C. Understanding population structure and historical demography of Litsea auriculata (Lauraceae), an endangered species in east China. Sci Rep 2017; 7:17343. [PMID: 29229912 PMCID: PMC5725559 DOI: 10.1038/s41598-017-16917-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Accepted: 11/20/2017] [Indexed: 12/29/2022] Open
Abstract
Detecting how historical and contemporary factors contribute to genetic divergence and genetic structure is a central question in ecology and evolution. We examine this question by intergrating population genetics with ecological niche modelling of Litsea auriculata (Lauraceae), which is endangered and native to east China. Geographical and environmental factors including climatic fluctuations since the last glacial maximum (LGM) have also contribute to population demography and patterns of genetic structure. L. auriculata populations underwent expansion after divergence and dramatically decreased to the current small size with relative population bottlenecks due to climate changes. Populations separated by physical geographical barrier including geographic distance and Yangtze River, as a result contemporary gene flow among L. auriculata populations showed drastic declines in comparison with historical gene flow, resulting in a high level of population divergence. Thus, patterns of genetic structure of L. auriculata can result from both geographic and environmental factors including climate changes. This information is helpful in forming conservation strategies for L. auriculata in China.
Collapse
Affiliation(s)
- Qifang Geng
- School of Life Sciences, Nanjing University, 163 Xianlin Road, Nanjing, 210023, Jiangsu Province, China.,State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, 163 Xianlin Road, Nanjing, 210023, Jiangsu Province, China.,Asian Natural Environmental Science Center, The University of Tokyo, 1-1-8 Midori-cho, Nishitokyo, Tokyo, 188-0002, Japan
| | - Lin Sun
- School of Life Sciences, Nanjing University, 163 Xianlin Road, Nanjing, 210023, Jiangsu Province, China.,State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, 163 Xianlin Road, Nanjing, 210023, Jiangsu Province, China
| | - Peihua Zhang
- School of Life Sciences, Nanjing University, 163 Xianlin Road, Nanjing, 210023, Jiangsu Province, China.,State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, 163 Xianlin Road, Nanjing, 210023, Jiangsu Province, China
| | - Zhongsheng Wang
- School of Life Sciences, Nanjing University, 163 Xianlin Road, Nanjing, 210023, Jiangsu Province, China. .,State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, 163 Xianlin Road, Nanjing, 210023, Jiangsu Province, China.
| | - Yingxiong Qiu
- Key laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education, and college of Life Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang Province, China
| | - Hong Liu
- Department of Earth and Environment, International Center for Tropical Botany, Florida International University, Miami, FL, 33199, USA
| | - Chunlan Lian
- Asian Natural Environmental Science Center, The University of Tokyo, 1-1-8 Midori-cho, Nishitokyo, Tokyo, 188-0002, Japan.
| |
Collapse
|
6
|
Porretta D, Latrofa MS, Dantas-Torres F, Mastrantonio V, Iatta R, Otranto D, Urbanelli S. Exon-intron structure and sequence variation of the calreticulin gene among Rhipicephalus sanguineus group ticks. Parasit Vectors 2016; 9:640. [PMID: 27955695 PMCID: PMC5154033 DOI: 10.1186/s13071-016-1909-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2016] [Accepted: 11/23/2016] [Indexed: 11/12/2022] Open
Abstract
Background Calreticulin proteins (CRTs) are important components of tick saliva, which is involved in the blood meal success, pathogen transmission and host allergic responses. The characterization of the genes encoding for salivary proteins, such as CRTs, is pivotal to understand the mechanisms of tick-host interaction during blood meal and to develop tick control strategies based on their inhibition. In hard ticks, crt genes were shown to have only one intron with conserved position among species. In this study we investigated the exon-intron structure and variation of the crt gene in Rhipicephalus spp. ticks in order to assess the crt exon-intron structure and the potential utility of crt gene as a molecular marker. Methods We sequenced the exon-intron region of crt gene in ticks belonging to so-called tropical and temperate lineages of Rhipicephalus sanguineus (sensu lato), Rhipicephalus sp. I, Rhipicephalus sp. III, Rhipicephalus sp. IV, R. guilhoni, R. muhsamae and R. turanicus. Genetic divergence and phylogenetic relationships between the sequences obtained were estimated. Results All individuals belonging to the tropical lineage of R. sanguineus (s.l.), R. guilhoni, R. muhsamae, R. turanicus, Rhipicephalus sp. III and Rhipicephalus sp. IV analysed showed crt intron-present alleles. However, both crt intron-present and intron-absent alleles were found in Rhipicephalus sp. I and the temperate lineage of R. sanguineus (s.l.), showing the occurrence of an intraspecific intron presence-absence polymorphism. Phylogenetic relationships among the crt intron-present sequences showed distinct lineages for all taxa, with the tropical and temperate lineages of R. sanguineus (s.l.) being more closely related to each other. Conclusions We expanded previous studies about the characterization of crt gene in hard ticks. Our results highlighted a previously overlooked variation in the crt structure among Rhipicephalus spp., and among hard ticks in general. Notably, the intron presence/absence polymorphism observed herein can be a candidate study-system to investigate the early stages of intron gain/loss before fixation at species level and some debated questions about intron evolution. Finally, the sequence variation observed supports the suitability of the crt gene for molecular recognition of Rhipicephalus spp. and for phylogenetic studies in association with other markers. Electronic supplementary material The online version of this article (doi:10.1186/s13071-016-1909-3) contains supplementary material, which is available to authorized users.
Collapse
Affiliation(s)
- Daniele Porretta
- Department of Environmental Biology, Sapienza University of Rome, Rome, Italy
| | | | - Filipe Dantas-Torres
- Department of Veterinary Medicine, University of Bari, 70010, Valenzano, Bari, Italy.,Department of Immunology, Aggeu Magalhães Research Centre, Oswaldo Cruz Foundation, 50740465, Recife, PE, Brazil
| | | | - Roberta Iatta
- Department of Veterinary Medicine, University of Bari, 70010, Valenzano, Bari, Italy
| | - Domenico Otranto
- Department of Veterinary Medicine, University of Bari, 70010, Valenzano, Bari, Italy.
| | - Sandra Urbanelli
- Department of Environmental Biology, Sapienza University of Rome, Rome, Italy
| |
Collapse
|
7
|
Paulauskas A, Galdikaitė-Brazienė E, Radzijevskaja J, Aleksandravičienė A, Galdikas M. Genetic diversity of Ixodes ricinus (Ixodida: Ixodidae) ticks in sympatric and allopatric zones in Baltic countries. JOURNAL OF VECTOR ECOLOGY : JOURNAL OF THE SOCIETY FOR VECTOR ECOLOGY 2016; 41:244-253. [PMID: 27860008 DOI: 10.1111/jvec.12219] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2016] [Accepted: 06/29/2016] [Indexed: 06/06/2023]
Abstract
Ixodes ricinus (Linnaeus 1758) and Ixodes persulcatus (Schulze 1930) ticks are involved in the transmission of a wide variety of pathogens with considerable impact on human and animal health. The co-distribution zone of these two tick species is situated in the Baltic countries, which provides a special setting for the population studies. In the present study, genetic variability of I. ricinus ticks collected in allopatric and sympatric locations in the Baltic countries has been investigated using a sequence analysis of the mitochondrial DNA control region, 16S rRNA and cytb genes. There were 32 haplotypes (Hd: 0.8551) and 27 haplotypes (Hd:0.8213) of control region sequences from ticks in allopatric and sympatric zones detected, respectively. Out of 47 16S rRNA gene haplotypes, 32 haplotypes (Hd: 0.7213) were found in the allopatric zone and 27 (Hd:0.9572) in the sympatric zone. The Cytb gene was very conserved and monomorphic in ticks from the allopatric zone, whereas three unique haplotypes were observed in the sympatric zone. The higher number of unique haplotypes of the control region was detected in the allopatric zone. Median joining network and Fst analysis did not reveal a clear separation between ticks from the two zones.
Collapse
Affiliation(s)
- A Paulauskas
- Vytautas Magnus University, Vileikos St. 8, Kaunas, Lithuania
| | | | - J Radzijevskaja
- Vytautas Magnus University, Vileikos St. 8, Kaunas, Lithuania
| | | | - M Galdikas
- Vytautas Magnus University, Vileikos St. 8, Kaunas, Lithuania
| |
Collapse
|
8
|
Carpi G, Kitchen A, Kim HL, Ratan A, Drautz-Moses DI, McGraw JJ, Kazimirova M, Rizzoli A, Schuster SC. Mitogenomes reveal diversity of the European Lyme borreliosis vector Ixodes ricinus in Italy. Mol Phylogenet Evol 2016; 101:194-202. [DOI: 10.1016/j.ympev.2016.05.009] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2016] [Revised: 05/02/2016] [Accepted: 05/04/2016] [Indexed: 01/04/2023]
|
9
|
Range wide molecular data and niche modeling revealed the Pleistocene history of a global invader (Halyomorpha halys). Sci Rep 2016; 6:23192. [PMID: 26996353 PMCID: PMC4800403 DOI: 10.1038/srep23192] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2014] [Accepted: 02/29/2016] [Indexed: 11/18/2022] Open
Abstract
Invasive species’ Pleistocene history contains much information on its present population structure, dispersability and adaptability. In this study, the Pleistocene history of a global invasive pest (Brown Marmorated Stink Bug BMSB, Halyomorpha halys) was unveiled using the coupled approach of phylogeography and ecological niche modelling. Rangewide molecular data suggests that the Taiwan and other native populations had diverged in mid-Pleistocene. In mainland China, the native BMSB did not experience population contraction and divergence during last glacial, but persisted in interconnected populations. Combined Bayesian Skyline Plot (BSP) and niche modelling revealed a rapid expansion occurred during the transition of Last Inter Glacial (LIG) to Last Glacial Maximum (LGM). High genetic diversity and multi-reticular haplotypes network exist in the original sources populations of BMSB invasion in northern China. They were speculated to be colonized from the central China, with many derived haplotypes evolved to adapt the novel environment. The ENM future prediction suggest that BMSB may expand northward to higher latitudes in the US and Europe, because of its high invasive ability, together with the available suitable climate space there.
Collapse
|
10
|
Montagna M, Mereghetti V, Lencioni V, Rossaro B. Integrated Taxonomy and DNA Barcoding of Alpine Midges (Diptera: Chironomidae). PLoS One 2016; 11:e0149673. [PMID: 26938660 PMCID: PMC4777558 DOI: 10.1371/journal.pone.0149673] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2015] [Accepted: 02/02/2016] [Indexed: 11/19/2022] Open
Abstract
Rapid and efficient DNA-based tools are recommended for the evaluation of the insect biodiversity of high-altitude streams. In the present study, focused principally on larvae of the genus Diamesa Meigen 1835 (Diptera: Chironomidae), the congruence between morphological/molecular delimitation of species as well as performances in taxonomic assignments were evaluated. A fragment of the mitochondrial cox1 gene was obtained from 112 larvae, pupae and adults (Diamesinae, Orthocladiinae and Tanypodinae) that were collected in different mountain regions of the Alps and Apennines. On the basis of morphological characters 102 specimens were attributed to 16 species, and the remaining ten specimens were identified to the genus level. Molecular species delimitation was performed using: i) distance-based Automatic Barcode Gap Discovery (ABGD), with no a priori assumptions on species identification; and ii) coalescent tree-based approaches as the Generalized Mixed Yule Coalescent model, its Bayesian implementation and Bayesian Poisson Tree Processes. The ABGD analysis, estimating an optimal intra/interspecific nucleotide distance threshold of 0.7%-1.4%, identified 23 putative species; the tree-based approaches, identified between 25-26 entities, provided nearly identical results. All species belonging to zernyi, steinboecki, latitarsis, bertrami, dampfi and incallida groups, as well as outgroup species, are recovered as separate entities, perfectly matching the identified morphospecies. In contrast, within the cinerella group, cases of discrepancy arose: i) the two morphologically separate species D. cinerella and D. tonsa are neither monophyletic nor diagnosable exhibiting low values of between-taxa nucleotide mean divergence (0.94%); ii) few cases of larvae morphological misidentification were observed. Head capsule color is confirmed to be a valid character able to discriminate larvae of D. zernyi, D. tonsa and D. cinerella, but it is here better defined as a color gradient between the setae submenti and genal setae. DNA barcodes performances were high: average accuracy was ~89% and precision of ~99%. On the basis of the present data, we can thus conclude that molecular identification represents a promising tool that could be effectively adopted in evaluating biodiversity of high-altitude streams.
Collapse
Affiliation(s)
- Matteo Montagna
- Dipartimento di Scienze Agrarie e Ambientali—Università degli Studi di Milano, Via Celoria 2, I-20133, Milano, Italy
| | - Valeria Mereghetti
- Dipartimento di Scienze Agrarie e Ambientali—Università degli Studi di Milano, Via Celoria 2, I-20133, Milano, Italy
| | - Valeria Lencioni
- MUSE—Museo delle Scienze, Corso del Lavoro e della Scienza 3, I-38122, Trento, Italy
| | - Bruno Rossaro
- Dipartimento di Scienze per gli Alimenti, la Nutrizione e l’Ambiente—Università degli Studi di Milano, Via Celoria 2, I-20133, Milano, Italy
| |
Collapse
|
11
|
De Marco L, Epis S, Comandatore F, Porretta D, Cafarchia C, Mastrantonio V, Dantas-Torres F, Otranto D, Urbanelli S, Bandi C, Sassera D. Transcriptome of larvae representing the Rhipicephalus sanguineus complex. Mol Cell Probes 2016; 31:85-90. [PMID: 26921517 DOI: 10.1016/j.mcp.2016.02.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2015] [Revised: 02/04/2016] [Accepted: 02/07/2016] [Indexed: 11/26/2022]
Abstract
Rhipicephalus sanguineus sensu lato (Ixodida: Ixodidae) is possibly the most widespread tick species worldwide, responsible for transmitting several vector-borne pathogens of medical and veterinary importance. Here, we explore the transcriptome of R. sanguineus s.l. larvae (Putignano strain). We sequenced total RNA from R. sanguineus s.l. larvae. A total of 15,566,986 short paired-end reads were de novo-assembled into 33,396 transcripts and then annotated and analyzed. Particular attention was paid to transcripts putatively encoding ATP-binding proteins, due to their importance as mechanisms of detoxification and acaricide resistance. Additionally, microsatellite loci were investigated, as these are useful markers for population genetic studies. The present data and analyses provide a comprehensive transcriptomic resource for R. sanguineus. The results presented here will aid further genetic and genomic studies of this important tick species.
Collapse
Affiliation(s)
- Leone De Marco
- Department of Biology and Biotechnology, University of Pavia, Pavia, Italy; School of Bioscience and Veterinary Medicine, University of Camerino, Camerino, Italy
| | - Sara Epis
- Department of Veterinary Science and Public Health, University of Milan, Milan, Italy
| | - Francesco Comandatore
- Department of Biology and Biotechnology, University of Pavia, Pavia, Italy; Department of Veterinary Science and Public Health, University of Milan, Milan, Italy
| | - Daniele Porretta
- Department of Environmental Biology, University of Rome 'La Sapienza', Rome, Italy
| | - Claudia Cafarchia
- Department of Veterinary Medicine, University 'Aldo Moro' of Bari, Bari, Italy
| | | | - Filipe Dantas-Torres
- Department of Veterinary Medicine, University 'Aldo Moro' of Bari, Bari, Italy; Department of Immunology, Aggeu Magalhães Research Center, Oswaldo Cruz Foundation, Recife, Brazil
| | - Domenico Otranto
- Department of Veterinary Medicine, University 'Aldo Moro' of Bari, Bari, Italy
| | - Sandra Urbanelli
- Department of Environmental Biology, University of Rome 'La Sapienza', Rome, Italy
| | - Claudio Bandi
- Department of Veterinary Science and Public Health, University of Milan, Milan, Italy
| | - Davide Sassera
- Department of Biology and Biotechnology, University of Pavia, Pavia, Italy.
| |
Collapse
|
12
|
van der Mescht L, Matthee S, Matthee CA. A genetic perspective on the taxonomy and evolution of the medically important flea,Dinopsyllus ellobius(Siphonaptera: Dinopsyllinae), and the resurrection ofDinopsyllus abaris. Biol J Linn Soc Lond 2015. [DOI: 10.1111/bij.12615] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Luther van der Mescht
- Department of Conservation Ecology and Entomology; Stellenbosch University; Private Bag X1 Matieland 7602 South Africa
- Evolutionary Genomics Group; Department of Botany and Zoology; Stellenbosch University; Private Bag X1 Matieland 7602 South Africa
| | - Sonja Matthee
- Department of Conservation Ecology and Entomology; Stellenbosch University; Private Bag X1 Matieland 7602 South Africa
| | - Conrad A. Matthee
- Evolutionary Genomics Group; Department of Botany and Zoology; Stellenbosch University; Private Bag X1 Matieland 7602 South Africa
| |
Collapse
|
13
|
van der Mescht L, Matthee S, Matthee CA. Comparative phylogeography between two generalist flea species reveal a complex interaction between parasite life history and host vicariance: parasite-host association matters. BMC Evol Biol 2015; 15:105. [PMID: 26058755 PMCID: PMC4460865 DOI: 10.1186/s12862-015-0389-y] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2014] [Accepted: 05/26/2015] [Indexed: 11/10/2022] Open
Abstract
Background In parasitic taxa, life history traits such as microhabitat preference and host specificity can result in differential evolutionary responses to similar abiotic events. The present study investigates the influence of vicariance and host association on the genetic structure of two generalist flea species, Listropsylla agrippinae, and Chiastopsylla rossi. The taxa differ in the time spent on the host (predominantly fur vs. nest) and level of host specificity. Results A total of 1056 small mammals were brushed to collect 315 fleas originating from 20 geographically distinct localities in South Africa. Phylogeographic genetic structure of L. agrippinae and C. rossi were determined by making use of 315 mitochondrial COII and 174 nuclear EF1-α sequences. Both parasites show significant genetic differentiation among the majority of the sampling sites confirming limited dispersal ability for fleas. The generalist fur flea with a narrower host range, L. agrippinae, displayed geographic mtDNA spatial genetic structure at the regional scale and this pattern is congruent with host vicariance. The dating of the divergence between the L. agrippinae geographic clades co-insides with paleoclimatic changes in the region approximately 5.27 Ma and this provides some evidence for a co-evolutionary scenario. In contrast, the more host opportunistic nest flea, C. rossi, showed a higher level of mtDNA and nDNA spatial genetic structure at the inter-populational scale, most likely attributed to comparatively higher restrictions to dispersal. Conclusions In the present study, the evolutionary history of the flea species could best be explained by the association between parasite and host (time spent on the host). The phylogeographic pattern of the fur flea with a narrower host range correspond to host spatial genetic structures, while the pattern in the host opportunistic nest flea correspond to higher genetic divergences between sampling localities that may also be associated with higher effective population sizes. These findings suggest that genetic exchange among localities are most likely explained by differences in the dispersal abilities and life histories of the flea species. Electronic supplementary material The online version of this article (doi:10.1186/s12862-015-0389-y) contains supplementary material, which is available to authorized users.
Collapse
Affiliation(s)
- Luther van der Mescht
- Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag ×1, Matieland, 7602, Stellenbosch, South Africa. .,Evolutionary Genomics Group, Department of Botany and Zoology, Stellenbosch University, Private Bag ×1, Matieland, 7602, Stellenbosch, South Africa.
| | - Sonja Matthee
- Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag ×1, Matieland, 7602, Stellenbosch, South Africa.
| | - Conrad A Matthee
- Evolutionary Genomics Group, Department of Botany and Zoology, Stellenbosch University, Private Bag ×1, Matieland, 7602, Stellenbosch, South Africa.
| |
Collapse
|
14
|
Epis S, Porretta D, Mastrantonio V, Urbanelli S, Sassera D, De Marco L, Mereghetti V, Montagna M, Ricci I, Favia G, Bandi C. Temporal dynamics of the ABC transporter response to insecticide treatment: insights from the malaria vector Anopheles stephensi. Sci Rep 2014; 4:7435. [PMID: 25504146 PMCID: PMC4262823 DOI: 10.1038/srep07435] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2014] [Accepted: 11/21/2014] [Indexed: 12/05/2022] Open
Abstract
In insects, ABC transporters have been shown to contribute to defence/resistance to insecticides by reducing toxic concentrations in cells/tissues. Despite the extensive studies about this detoxifying mechanism, the temporal patterns of ABC transporter activation have been poorly investigated. Using the malaria vector Anopheles stephensi as a study system, we investigated the expression profile of ABC genes belonging to different subfamilies in permethrin-treated larvae at different time points (30 min to 48 h). Our results showed that the expression of ABCB and ABCG subfamily genes was upregulated at 1 h after treatment, with the highest expression observed at 6 h. Therefore, future investigations on the temporal dynamics of ABC gene expression will allow a better implementation of insecticide treatment regimens, including the use of specific inhibitors of ABC efflux pumps.
Collapse
Affiliation(s)
- Sara Epis
- Department of Veterinary Science and Public Health, University of Milan, Milan, Italy
| | - Daniele Porretta
- Department of Environmental Biology, University "La Sapienza" of Rome, Rome, Italy
| | | | - Sandra Urbanelli
- Department of Environmental Biology, University "La Sapienza" of Rome, Rome, Italy
| | - Davide Sassera
- Department of Biology and Biotechnology, University of Pavia, Pavia, Italy
| | - Leone De Marco
- Department of Biology and Biotechnology, University of Pavia, Pavia, Italy
| | - Valeria Mereghetti
- Department of Veterinary Science and Public Health, University of Milan, Milan, Italy
| | - Matteo Montagna
- Department of Agricultural and Environmental Sciences, University of Milan, Milan, Italy
| | - Irene Ricci
- School of Bioscience and Veterinary Medicine, University of Camerino, Camerino, Italy
| | - Guido Favia
- School of Bioscience and Veterinary Medicine, University of Camerino, Camerino, Italy
| | - Claudio Bandi
- Department of Veterinary Science and Public Health, University of Milan, Milan, Italy
| |
Collapse
|
15
|
Urbanelli S, Porretta D, Mastrantonio V, Bellini R, Pieraccini G, Romoli R, Crasta G, Nascetti G. Hybridization, natural selection, and evolution of reproductive isolation: a 25-years survey of an artificial sympatric area between two mosquito sibling species of the Aedes mariae complex. Evolution 2014; 68:3030-8. [PMID: 25041755 DOI: 10.1111/evo.12490] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2013] [Accepted: 06/15/2014] [Indexed: 11/28/2022]
Abstract
Natural selection can act against maladaptive hybridization between co-occurring divergent populations leading to evolution of reproductive isolation among them. A critical unanswered question about this process that provides a basis for the theory of speciation by reinforcement, is whether natural selection can cause hybridization rates to evolve to zero. Here, we investigated this issue in two sibling mosquitoes species, Aedes mariae and Aedes zammitii, that show postmating reproductive isolation (F1 males sterile) and partial premating isolation (different height of mating swarms) that could be reinforced by natural selection against hybridization. In 1986, we created an artificial sympatric area between the two species and sampled about 20,000 individuals over the following 25 years. Between 1986 and 2011, the composition of mating swarms and the hybridization rate between the two species were investigated across time in the sympatric area. Our results showed that A. mariae and A. zammitii have not completed reproductive isolation since their first contact in the artificial sympatric area. We have discussed the relative role of factors such as time of contact, gene flow, strength of natural selection, and biological mechanisms causing prezygotic isolation to explain the observed results.
Collapse
Affiliation(s)
- Sandra Urbanelli
- Department of Environmental Biology, University of Rome "La Sapienza", Rome, Italy.
| | | | | | | | | | | | | | | |
Collapse
|
16
|
Epis S, Porretta D, Mastrantonio V, Comandatore F, Sassera D, Rossi P, Cafarchia C, Otranto D, Favia G, Genchi C, Bandi C, Urbanelli S. ABC transporters are involved in defense against permethrin insecticide in the malaria vector Anopheles stephensi. Parasit Vectors 2014; 7:349. [PMID: 25073980 PMCID: PMC4124152 DOI: 10.1186/1756-3305-7-349] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2014] [Accepted: 07/15/2014] [Indexed: 11/18/2022] Open
Abstract
Background Proteins from the ABC family (ATP-binding cassette) represent the largest known group of efflux pumps, responsible for transporting specific molecules across lipid membranes in both prokaryotic and eukaryotic organisms. In arthropods they have been shown to play a role in insecticide defense/resistance. The presence of ABC transporters and their possible association with insecticide transport have not yet been investigated in the mosquito Anopheles stephensi, the major vector of human malaria in the Middle East and South Asian regions. Here we investigated the presence and role of ABCs in transport of permethrin insecticide in a susceptible strain of this mosquito species. Methods To identify ABC transporter genes we obtained a transcriptome from untreated larvae of An. stephensi and then compared it with the annotated transcriptome of Anopheles gambiae. To analyse the association between ABC transporters and permethrin we conducted bioassays with permethrin alone and in combination with an ABC inhibitor, and then we investigated expression profiles of the identified genes in larvae exposed to permethrin. Results Bioassays showed an increased mortality of mosquitoes when permethrin was used in combination with the ABC-transporter inhibitor. Genes for ABC transporters were detected in the transcriptome, and five were selected (AnstABCB2, AnstABCB3, AnstABCB4, AnstABCmember6 and AnstABCG4). An increased expression in one of them (AnstABCG4) was observed in larvae exposed to the LD50 dose of permethrin. Contrary to what was found in other insect species, no up-regulation was observed in the AnstABCB genes. Conclusions Our results show for the first time the involvement of ABC transporters in larval defense against permethrin in An. stephensi and, more in general, confirm the role of ABC transporters in insecticide defense. The differences observed with previous studies highlight the need of further research as, despite the growing number of studies on ABC transporters in insects, the heterogeneity of the results available at present does not allow us to infer general trends in ABC transporter-insecticide interactions. Electronic supplementary material The online version of this article (doi:10.1186/1756-3305-7-349) contains supplementary material, which is available to authorized users.
Collapse
Affiliation(s)
| | | | | | | | | | | | | | | | | | | | - Claudio Bandi
- Department of Veterinary Science and Public Health, University of Milan, Milan, Italy.
| | | |
Collapse
|
17
|
Estrada-Peña A, Estrada-Sánchez A, de la Fuente J. A global set of Fourier-transformed remotely sensed covariates for the description of abiotic niche in epidemiological studies of tick vector species. Parasit Vectors 2014; 7:302. [PMID: 24984933 PMCID: PMC4089935 DOI: 10.1186/1756-3305-7-302] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2014] [Accepted: 06/25/2014] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Correlative modelling combines observations of species occurrence with environmental variables to capture the niche of organisms. It has been argued for the use of predictors that are ecologically relevant to the target species, instead of the automatic selection of variables. Without such biological background, the forced inclusion of numerous variables can produce models that are highly inflated and biologically irrelevant. The tendency in correlative modelling is to use environmental variables that are interpolated from climate stations, or monthly estimates of remotely sensed features. METHODS We produced a global dataset of abiotic variables based on the transformation by harmonic regression (time series Fourier transform) of monthly data derived from the MODIS series of satellites at a nominal resolution of 0.1°. The dataset includes variables, such as day and night temperature or vegetation and water availability, which potentially could affect physiological processes and therefore are surrogates in tracking the abiotic niche. We tested the capacities of the dataset to describe the abiotic niche of parasitic organisms, applying it to discriminate five species of the globally distributed tick subgenus Boophilus and using more than 9,500 published records. RESULTS With an average reliability of 82%, the Fourier-transformed dataset outperformed the raw MODIS-derived monthly data for temperature and vegetation stress (62% of reliability) and other popular interpolated climate datasets, which had variable reliability (56%-65%). The transformed abiotic variables always had a collinearity of less than 3 (as measured by the variance inflation factor), in contrast with interpolated datasets, which had values as high as 300. CONCLUSIONS The new dataset of transformed covariates could address the tracking of abiotic niches without inflation of the models arising from internal issues with the descriptive variables, which appear when variance inflation is higher than 10. The coefficients of the harmonic regressions can also be used to reconstruct the complete original time series, being an adequate complement for ecological, epidemiological, or phylogenetic studies. We provide the dataset as a free download under the GNU general public license as well as the scripts necessary to integrate other time series of data into the calculations of the harmonic coefficients.
Collapse
Affiliation(s)
- Agustín Estrada-Peña
- Dept, of Animal Pathology, University of Zaragoza, Miguel Servet 177, Zaragoza 50013, Spain.
| | | | | |
Collapse
|
18
|
Quillery E, Quenez O, Peterlongo P, Plantard O. Development of genomic resources for the tick Ixodes ricinus: isolation and characterization of single nucleotide polymorphisms. Mol Ecol Resour 2013; 14:393-400. [PMID: 24119113 DOI: 10.1111/1755-0998.12179] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2013] [Revised: 09/17/2013] [Accepted: 09/20/2013] [Indexed: 12/12/2022]
Abstract
Assessing the genetic variability of the tick Ixodes ricinus-an important vector of pathogens in Europe-is an essential step for setting up antitick control methods. Here, we report the first identification of a set of SNPs isolated from the genome of I. ricinus, by applying a reduction in genomic complexity, pyrosequencing and new bioinformatics tools. Almost 1.4 million of reads (average length: 528 nt) were generated with a full Roche 454 GS FLX run on two reduced representation libraries of I. ricinus. A newly developed bioinformatics tool (DiscoSnp), which isolates SNPs without requiring any reference genome, was used to obtain 321 088 putative SNPs. Stringent selection criteria were applied in a bioinformatics pipeline to select 1768 SNPs for the development of specific primers. Among 384 randomly SNPs tested by Fluidigm genotyping technology on 464 individuals ticks, 368 SNPs loci (96%) exhibited the presence of the two expected alleles. Hardy-Weinberg equilibrium tests conducted on six natural populations of ticks have shown that from 26 to 46 of the 384 loci exhibited significant heterozygote deficiency.
Collapse
Affiliation(s)
- E Quillery
- INRA, UMR1300 Biology, Epidemiology and Risk Analysis in animal health, BP 40706, F-44307, Nantes, France; LUNAM Université, Oniris, Ecole nationale vétérinaire, agroalimentaire et de l'alimentation Nantes Atlantique, UMR BioEpAR, Nantes, 44307, France
| | | | | | | |
Collapse
|
19
|
Cangi N, Horak IG, Apanaskevich DA, Matthee S, das Neves LCBG, Estrada-Peña A, Matthee CA. The influence of interspecific competition and host preference on the phylogeography of two African ixodid tick species. PLoS One 2013; 8:e76930. [PMID: 24130813 PMCID: PMC3793905 DOI: 10.1371/journal.pone.0076930] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2013] [Accepted: 09/04/2013] [Indexed: 11/30/2022] Open
Abstract
A comparative phylogeographic study on two economically important African tick species, Amblyomma hebraeum and Hyalomma rufipes was performed to test the influence of host specificity and host movement on dispersion. Pairwise AMOVA analyses of 277 mtDNA COI sequences supported significant population differentiation among the majority of sampling sites. The geographic mitochondrial structure was not supported by nuclear ITS-2 sequencing, probably attributed to a recent divergence. The three-host generalist, A. hebraeum, showed less mtDNA geographic structure, and a lower level of genetic diversity, while the more host-specific H. rufipes displayed higher levels of population differentiation and two distinct mtDNA assemblages (one predominantly confined to South Africa/Namibia and the other to Mozambique and East Africa). A zone of overlap is present in southern Mozambique. A mechanistic climate model suggests that climate alone cannot be responsible for the disruption in female gene flow. Our findings furthermore suggest that female gene dispersal of ticks is more dependent on the presence of juvenile hosts in the environment than on the ability of adult hosts to disperse across the landscape. Documented interspecific competition between the juvenile stages of H. rufipes and H. truncatum is implicated as a contributing factor towards disrupting gene flow between the two southern African H. rufipes genetic assemblages.
Collapse
Affiliation(s)
- Nídia Cangi
- Evolutionary Genomics Group, Department of Botany and Zoology, Stellenbosch University, Matieland, South Africa
| | - Ivan G. Horak
- Department of Veterinary Tropical Diseases, Faculty of Veterinary Science, University of Pretoria, Onderstepoort, South Africa
| | - Dmitry A. Apanaskevich
- United States National Tick Collection, The James H. Oliver, Jr. Institute for Coastal Plain Science, Georgia Southern University, Statesboro, Georgia, United States of America
| | - Sonja Matthee
- Department of Conservation Ecology and Entomology, Stellenbosch University, Matieland, South Africa
| | - Luís C. B. G. das Neves
- Centro de Biotecnologia-UEM and Faculdade de Veterinária, Eduardo Mondlane University, Maputo, Mozambique
| | | | - Conrad A. Matthee
- Evolutionary Genomics Group, Department of Botany and Zoology, Stellenbosch University, Matieland, South Africa
- * E-mail:
| |
Collapse
|
20
|
McCoy KD, Léger E, Dietrich M. Host specialization in ticks and transmission of tick-borne diseases: a review. Front Cell Infect Microbiol 2013; 3:57. [PMID: 24109592 PMCID: PMC3790072 DOI: 10.3389/fcimb.2013.00057] [Citation(s) in RCA: 118] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2013] [Accepted: 09/13/2013] [Indexed: 11/24/2022] Open
Abstract
Determining patterns of host use, and the frequency at which these patterns change, are of key importance if we are to understand tick population dynamics, the evolution of tick biodiversity, and the circulation and evolution of associated pathogens. The question of whether ticks are typically host specialists or host generalists has been subject to much debate over the last half-century. Indeed, early research proposed that morphological diversity in ticks was linked to host specific adaptations and that most ticks were specialists. Later work disputed this idea and suggested that ticks are largely limited by biogeographic conditions and tend to use all locally available host species. The work presented in this review suggests that the actual answer likely lies somewhere between these two extremes. Although recent observational studies support the view that phylogenetically diverse host species share ticks when found on similar ecological ranges, theory on host range evolution predicts that host specialization should evolve in ticks given their life history characteristics. Contemporary work employing population genetic tools to examine host-associated population structure in several tick systems support this prediction and show that simple species records are not enough to determine whether a parasite is a true host generalist; host specialization does evolve in ticks at local scales, but may not always lead to speciation. Ticks therefore seem to follow a pattern of being global generalists, local specialists. Given this, the notion of host range needs to be modified from an evolutionary perspective, where one simply counts the number of hosts used across the geographic distribution, to a more ecological view, where one considers host use at a local scale, if we are to better understand the circulation of tick-borne pathogens and exposure risks for humans and livestock.
Collapse
Affiliation(s)
- Karen D. McCoy
- MiVEGEC, Mixed Research Unit 5290 CNRS-IRD-UM1-UM2, Centre IRDMontpellier, France
- Department of Biology, Carleton UniversityOttawa, ON, Canada
| | - Elsa Léger
- MiVEGEC, Mixed Research Unit 5290 CNRS-IRD-UM1-UM2, Centre IRDMontpellier, France
| | - Muriel Dietrich
- Centre de Recherche et de Veille sur les Maladies Emergentes dans l'Océan Indien, GIP CYROISt. Clotilde, France
- Department of Biology, Université de La RéunionSt. Denis, France
| |
Collapse
|
21
|
Porretta D, Mastrantonio V, Amendolia S, Gaiarsa S, Epis S, Genchi C, Bandi C, Otranto D, Urbanelli S. Effects of global changes on the climatic niche of the tick Ixodes ricinus inferred by species distribution modelling. Parasit Vectors 2013; 6:271. [PMID: 24330500 PMCID: PMC3848450 DOI: 10.1186/1756-3305-6-271] [Citation(s) in RCA: 91] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2013] [Accepted: 09/12/2013] [Indexed: 12/04/2022] Open
Abstract
BACKGROUND Global climate change can seriously impact on the epidemiological dynamics of vector-borne diseases. In this study we investigated how future climatic changes could affect the climatic niche of Ixodes ricinus (Acari, Ixodida), among the most important vectors of pathogens of medical and veterinary concern in Europe. METHODS Species Distribution Modelling (SDM) was used to reconstruct the climatic niche of I. ricinus, and to project it into the future conditions for 2050 and 2080, under two scenarios: a continuous human demographic growth and a severe increase of gas emissions (scenario A2), and a scenario that proposes lower human demographic growth than A2, and a more sustainable gas emissions (scenario B2). Models were reconstructed using the algorithm of "maximum entropy", as implemented in the software Maxent 3.3.3e; 4,544 occurrence points and 15 bioclimatic variables were used. RESULTS In both scenarios an increase of climatic niche of about two times greater than the current area was predicted as well as a higher climatic suitability under the scenario B2 than A2. Such an increase occurred both in a latitudinal and longitudinal way, including northern Eurasian regions (e.g. Sweden and Russia), that were previously unsuitable for the species. CONCLUSIONS Our models are congruent with the predictions of range expansion already observed in I. ricinus at a regional scale and provide a qualitative and quantitative assessment of the future climatically suitable areas for I. ricinus at a continental scale. Although the use of SDM at a higher resolution should be integrated by a more refined analysis of further abiotic and biotic data, the results presented here suggest that under future climatic scenarios most of the current distribution area of I. ricinus could remain suitable and significantly increase at a continental geographic scale. Therefore disease outbreaks of pathogens transmitted by this tick species could emerge in previous non-endemic geographic areas. Further studies will implement and refine present data toward a better understanding of the risk represented by I. ricinus to human health.
Collapse
Affiliation(s)
- Daniele Porretta
- Department of Environmental Biology, University of Rome “La Sapienza”, Via dei Sardi 70, 00185 Rome, Italy
| | - Valentina Mastrantonio
- Department of Environmental Biology, University of Rome “La Sapienza”, Via dei Sardi 70, 00185 Rome, Italy
| | - Sara Amendolia
- Department of Environmental Biology, University of Rome “La Sapienza”, Via dei Sardi 70, 00185 Rome, Italy
| | - Stefano Gaiarsa
- Department of Veterinary Science and Public Health, University of Milan, Milan, Italy
| | - Sara Epis
- Department of Veterinary Science and Public Health, University of Milan, Milan, Italy
- School of Bioscience and Biotechnology, University of Camerino, Camerino, Italy
| | - Claudio Genchi
- Department of Veterinary Science and Public Health, University of Milan, Milan, Italy
| | - Claudio Bandi
- Department of Veterinary Science and Public Health, University of Milan, Milan, Italy
| | - Domenico Otranto
- Department of Veterinary Medicine, University of Bari, Bari, Italy
| | - Sandra Urbanelli
- Department of Environmental Biology, University of Rome “La Sapienza”, Via dei Sardi 70, 00185 Rome, Italy
| |
Collapse
|
22
|
Estrada-Peña A, Gray JS, Kahl O, Lane RS, Nijhof AM. Research on the ecology of ticks and tick-borne pathogens--methodological principles and caveats. Front Cell Infect Microbiol 2013; 3:29. [PMID: 23964348 PMCID: PMC3737478 DOI: 10.3389/fcimb.2013.00029] [Citation(s) in RCA: 131] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2013] [Accepted: 07/17/2013] [Indexed: 12/02/2022] Open
Abstract
Interest in tick-transmitted pathogens has experienced an upsurge in the past few decades. Routine application of tools for the detection of fragments of foreign DNA in ticks, together with a high degree of interest in the quantification of disease risk for humans, has led to a marked increase in the number of reports on the eco-epidemiology of tick-borne diseases. However, procedural errors continue to accumulate in the scientific literature, resulting in misleading information. For example, unreliable identification of ticks and pathogens, erroneous interpretations of short-term field studies, and the hasty acceptance of some tick species as vectors have led to ambiguities regarding the vector role of these arthropods. In this review, we focus on the ecological features driving the life cycle of ticks and the resulting effects on the eco-epidemiology of tick-transmitted pathogens. We review the factors affecting field collections of ticks, and we describe the biologically and ecologically appropriate procedures for describing tick host-seeking activity and its correlation with environmental traits. We detail the climatic variables that have biological importance on ticks and explain how they should be properly measured and analyzed. We also provide evidence to critically reject the use of some environmental traits that are being increasingly reported as the drivers of the behavior of ticks. With the aim of standardization, we propose unambiguous definitions of the status of hosts and ticks regarding their ability to maintain and spread a given pathogen. We also describe laboratory procedures and standards for evaluating the vectorial capacity of a tick or the reservoir role of a host. This approach should provide a coherent framework for the reporting of research findings concerning ticks and tick-borne diseases.
Collapse
Affiliation(s)
- Agustín Estrada-Peña
- Faculty of Veterinary Medicine, Department of Animal Pathology, University of Zaragoza, Zaragoza, Spain.
| | | | | | | | | |
Collapse
|