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Hudson CM, Cuenca Cambronero M, Moosmann M, Narwani A, Spaak P, Seehausen O, Matthews B. Environmentally independent selection for hybrids between divergent freshwater stickleback lineages in semi-natural ponds. J Evol Biol 2023; 36:1166-1184. [PMID: 37394735 DOI: 10.1111/jeb.14194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 05/03/2023] [Accepted: 05/31/2023] [Indexed: 07/04/2023]
Abstract
Hybridization following secondary contact of genetically divergent populations can influence the range expansion of invasive species, though specific outcomes depend on the environmental dependence of hybrid fitness. Here, using two genetically and ecologically divergent threespine stickleback lineages that differ in their history of freshwater colonization, we estimate fitness variation of parental lineages and hybrids in semi-natural freshwater ponds with contrasting histories of nutrient loading. In our experiment, we found that fish from the older freshwater lineage (Lake Geneva) and hybrids outperformed fish from the younger freshwater lineage (Lake Constance) in terms of both growth and survival, regardless of the environmental context of our ponds. Across all ponds, hybrids exhibited the highest survival. Although wild-caught adult populations differed in their functional and defence morphology, it is unclear which of these traits underlie the fitness differences observed among juveniles in our experiment. Overall, our work suggests that when hybrid fitness is insensitive to environmental conditions, as observed here, introgression may promote population expansion into unoccupied habitats and accelerate invasion success.
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Affiliation(s)
- Cameron Marshall Hudson
- Department of Fish Ecology and Evolution, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Center of Ecology, Evolution and Biochemistry, Lucerne, Switzerland
- Division of Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Zürich, Switzerland
| | - Maria Cuenca Cambronero
- Department of Fish Ecology and Evolution, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Center of Ecology, Evolution and Biochemistry, Lucerne, Switzerland
- Aquatic Ecology Group, University of Vic, Central University of Catalonia, Vic, Spain
| | - Marvin Moosmann
- Department of Fish Ecology and Evolution, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Center of Ecology, Evolution and Biochemistry, Lucerne, Switzerland
- Division of Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
| | - Anita Narwani
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Zürich, Switzerland
| | - Piet Spaak
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Zürich, Switzerland
| | - Ole Seehausen
- Department of Fish Ecology and Evolution, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Center of Ecology, Evolution and Biochemistry, Lucerne, Switzerland
- Division of Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
| | - Blake Matthews
- Department of Fish Ecology and Evolution, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Center of Ecology, Evolution and Biochemistry, Lucerne, Switzerland
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Hudson CM, Ladd SN, Leal MC, Schubert CJ, Seehausen O, Matthews B. Fit and fatty freshwater fish: contrasting polyunsaturated fatty acid phenotypes between hybridizing stickleback lineages. OIKOS 2021. [DOI: 10.1111/oik.08558] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Cameron M. Hudson
- Dept of Fish Ecology and Evolution, Eawag, Swiss Federal Inst. of Aquatic Science and Technology, Center of Ecology, Evolution and Biochemistry Kastanienbaum Switzerland
- Aquatic Ecology and Evolution, Inst. of Ecology and Evolution, Univ. of Bern Bern Switzerland
| | - S. Nemiah Ladd
- Dept of Surface Waters – Research and Management, Eawag, Swiss Federal Inst. of Aquatic Science and Technology, Center of Ecology, Evolution and Biochemistry Kastanienbaum Switzerland
- Ecosystem Physiology, Univ. of Freiburg Freiburg Germany
| | - Miguel C. Leal
- ECOMARE, CESAM – Center for Environmental and Marine Studies, Dept of Biology, Univ. of Aveiro, Campus Universitário de Santiago Aveiro Portugal
| | - Carsten J. Schubert
- Dept of Surface Waters – Research and Management, Eawag, Swiss Federal Inst. of Aquatic Science and Technology, Center of Ecology, Evolution and Biochemistry Kastanienbaum Switzerland
| | - Ole Seehausen
- Dept of Fish Ecology and Evolution, Eawag, Swiss Federal Inst. of Aquatic Science and Technology, Center of Ecology, Evolution and Biochemistry Kastanienbaum Switzerland
- Aquatic Ecology and Evolution, Inst. of Ecology and Evolution, Univ. of Bern Bern Switzerland
| | - Blake Matthews
- Dept of Fish Ecology and Evolution, Eawag, Swiss Federal Inst. of Aquatic Science and Technology, Center of Ecology, Evolution and Biochemistry Kastanienbaum Switzerland
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Biological and trophic consequences of genetic introgression between endemic and invasive Barbus fishes. Biol Invasions 2021; 23:3351-3368. [PMID: 34054333 PMCID: PMC8149140 DOI: 10.1007/s10530-021-02577-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Accepted: 05/13/2021] [Indexed: 12/02/2022]
Abstract
Genetic introgression with native species is recognized as a detrimental impact resulting from biological invasions involving taxonomically similar invaders. Whilst the underlying genetic mechanisms are increasingly understood, the ecological consequences of introgression are relatively less studied, despite their utility for increasing knowledge on how invasion impacts can manifest. Here, the ecological consequences of genetic introgression from an invasive congener were tested using the endemic barbel populations of central Italy, where the invader was the European barbel Barbus barbus. Four populations of native Barbus species (B. plebejus and B. tyberinus) were studied: two purebred and two completely introgressed with alien B. barbus. Across the four populations, differences in their biological traits (growth, body condition and population demographic structure) and trophic ecology (gut content analysis and stable isotope analysis) were tested. While all populations had similar body condition and were dominated by fish up to 2 years of age, the introgressed fish had substantially greater lengths at the same age, with maximum lengths 410–460 mm in hybrids versus 340–360 mm in native purebred barbel. The population characterized by the highest number of introgressed B. barbus alleles (81 %) had the largest trophic niche and a substantially lower trophic position than the other populations through its exploitation of a wider range of resources (e.g. small fishes and plants). These results attest that the genetic introgression of an invasive congener with native species can result in substantial ecological consequences, including the potential for cascading effects.
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Hudson CM, Lucek K, Marques DA, Alexander TJ, Moosmann M, Spaak P, Seehausen O, Matthews B. Threespine Stickleback in Lake Constance: The Ecology and Genomic Substrate of a Recent Invasion. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2020.611672] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
Invasive species can be powerful models for studying contemporary evolution in natural environments. As invading organisms often encounter new habitats during colonization, they will experience novel selection pressures. Threespine stickleback (Gasterosteus aculeatus complex) have recently colonized large parts of Switzerland and are invasive in Lake Constance. Introduced to several watersheds roughly 150 years ago, they spread across the Swiss Plateau (400–800 m a.s.l.), bringing three divergent hitherto allopatric lineages into secondary contact. As stickleback have colonized a variety of different habitat types during this recent range expansion, the Swiss system is a useful model for studying contemporary evolution with and without secondary contact. For example, in the Lake Constance region there has been rapid phenotypic and genetic divergence between a lake population and some stream populations. There is considerable phenotypic variation within the lake population, with individuals foraging in and occupying littoral, offshore pelagic, and profundal waters, the latter of which is a very unusual habitat for stickleback. Furthermore, adults from the lake population can reach up to three times the size of adults from the surrounding stream populations, and are large by comparison to populations globally. Here, we review the historical origins of the threespine stickleback in Switzerland, and the ecomorphological variation and genomic basis of its invasion in Lake Constance. We also outline the potential ecological impacts of this invasion, and highlight the interest for contemporary evolution studies.
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Selz OM, Dönz CJ, Vonlanthen P, Seehausen O. A taxonomic revision of the whitefish of lakes Brienz and Thun, Switzerland, with descriptions of four new species (Teleostei, Coregonidae). Zookeys 2020; 989:79-162. [PMID: 33223897 PMCID: PMC7669820 DOI: 10.3897/zookeys.989.32822] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2019] [Accepted: 08/07/2019] [Indexed: 12/16/2022] Open
Abstract
The alpha taxonomy of the endemic whitefish of lakes Brienz and Thun, Switzerland, is revised. We evaluate the status of seven known species: Coregonus steinmanni sp. nov., Coregonus profundus sp. nov. and Coregonus acrinasus sp. nov. are endemic to Lake Thun; Coregonus Brienzii sp. nov. is endemic to Lake Brienz; and C. alpinus, C. albellus, and C. fatioi from lakes Brienz and Thun are redescribed. One of these species, C. alpinus, is revised, since the lectotype for this species is incongruent with the species description given by Kottelat (1997) and Kottelat and Freyhof (2007). The name C. alpinus is thus retained for the lectotype designated by Kottelat (1997) and a new description of this taxon provided. For the species otherwise described by Kottelat (1997) and Kottelat and Freyhof (2007) as C. alpinus the new name C. profundus is designated. Coregonus acrinasus is genetically partially of allochthonous origin, closely related to the radiation of Lake Constance, and we therefore compare it to all recognized species of Lake Constance, C. wartmanni, C. macrophthalmus, C. arenicolus, and C. gutturosus.
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Affiliation(s)
- Oliver M Selz
- Department of Fish Ecology and Evolution, Centre for Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland Swiss Federal Institute of Aquatic Science and Technology Kastanienbaum Switzerland.,Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland University of Bern Bern Switzerland
| | - Carmela J Dönz
- Department of Fish Ecology and Evolution, Centre for Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland Swiss Federal Institute of Aquatic Science and Technology Kastanienbaum Switzerland.,Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland University of Bern Bern Switzerland
| | - Pascal Vonlanthen
- Department of Fish Ecology and Evolution, Centre for Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland Swiss Federal Institute of Aquatic Science and Technology Kastanienbaum Switzerland.,Aquabios GmbH, Les Fermes 57, 1792 Cordast, Switzerland Aquabios GmbH Cordast Switzerland
| | - Ole Seehausen
- Department of Fish Ecology and Evolution, Centre for Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland Swiss Federal Institute of Aquatic Science and Technology Kastanienbaum Switzerland.,Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland University of Bern Bern Switzerland
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6
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Liu W, Zhang Y, Chen X, Maung-Douglass K, Strong DR, Pennings SC. Contrasting plant adaptation strategies to latitude in the native and invasive range of Spartina alterniflora. THE NEW PHYTOLOGIST 2020; 226:623-634. [PMID: 31834631 DOI: 10.1111/nph.16371] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Accepted: 12/03/2019] [Indexed: 06/10/2023]
Abstract
Biological invasions offer model systems of contemporary evolution. We examined trait differences and evolution across geographic clines among continents of the intertidal grass Spartina alterniflora within its invasive and native ranges. We sampled vegetative and reproductive traits in the field at 20 sites over 20° latitude in China (invasive range) and 28 sites over 17° in the US (native range). We grew both Chinese and US plants in a glasshouse common garden for 3 yr. Chinese plants were c. 15% taller, c. 10% denser, and set up to four times more seed than US plants in both the field and common garden. The common garden experiments showed a striking genetic cline of seven-fold greater seed set at higher latitudes in the introduced but not the native range. By contrast, there was a slight genetic cline in some vegetative traits in the native but not the introduced range. Our results are consistent with others showing that introduced plants can evolve rapidly in the new range. S. alterniflora has evolved different trait clines in the native and introduced ranges, showing the importance of phenotypic plasticity and genetic control of change during the invasion process.
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Affiliation(s)
- Wenwen Liu
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Fujian, 361102, China
| | - Yihui Zhang
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Fujian, 361102, China
| | - Xincong Chen
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Fujian, 361102, China
| | - Keith Maung-Douglass
- Coastal Sustainability Studio, Louisiana State University, Baton Rouge, LA, 70803, USA
| | - Donald R Strong
- Department of Evolution and Ecology, University of California, Davis, CA, 95616, USA
| | - Steven C Pennings
- Department of Biology and Biochemistry, University of Houston, Houston, TX, 77204, USA
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7
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Qiao H, Liu W, Zhang Y, Zhang YY, Li QQ. Genetic admixture accelerates invasion via provisioning rapid adaptive evolution. Mol Ecol 2019; 28:4012-4027. [PMID: 31339595 DOI: 10.1111/mec.15192] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2018] [Revised: 06/26/2019] [Accepted: 07/12/2019] [Indexed: 12/20/2022]
Abstract
Genetic admixture, the intraspecific hybridization among divergent introduced sources, can immediately facilitate colonization via hybrid vigor and profoundly enhance invasion via contributing novel genetic variation to adaption. As hybrid vigor is short-lived, provisioning adaptation is anticipated to be the dominant and long-term profit of genetic admixture, but the evidence for this is rare. We employed the 30 years' geographic-scale invasion of the salt marsh grass, Spartina alterniflora, as an evolutionary experiment and evaluated the consequences of genetic admixture by combining the reciprocal transplant experiment with quantitative and population genetic surveys. Consistent with the documentation, we found that the invasive populations in China had multiple origins from the southern Atlantic coast and the Gulf of Mexico in the US. Interbreeding among these multiple sources generated a "hybrid swarm" that spread throughout the coast of China. In the northern and mid-latitude China, natural selection greatly enhanced fecundity, plant height and shoot regeneration compared to the native populations. Furthermore, genetic admixture appeared to have broken the negative correlation between plant height and shoot regeneration, which was genetically-based in the native range, and have facilitated the evolution of super competitive genotypes in the invasive range. In contrast to the evolved northern and mid-latitude populations, the southern invasive populations showed slight increase of plant height and shoot regeneration compared to the native populations, possibly reflecting the heterotic effect of the intraspecific hybridization. Therefore, our study suggests a critical role of genetic admixture in accelerating the geographic invasion via provisioning rapid adaptive evolution.
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Affiliation(s)
- Hongmei Qiao
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Wenwen Liu
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Yihui Zhang
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Yuan-Ye Zhang
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Qingshun Q Li
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, China.,Graduate College of Biomedical Sciences, Western University of Health Sciences, Pomona, CA, USA
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8
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Widespread hybridization among native and invasive species of Operophtera moths (Lepidoptera: Geometridae) in Europe and North America. Biol Invasions 2019. [DOI: 10.1007/s10530-019-02054-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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9
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Cordonnier M, Gayet T, Escarguel G, Kaufmann B. From hybridization to introgression between two closely related sympatric ant species. J ZOOL SYST EVOL RES 2019. [DOI: 10.1111/jzs.12297] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Marion Cordonnier
- UMR5023 Ecologie des Hydrosystèmes Naturels et Anthropisés, CNRS, Université Lyon 1, ENTPE Université Lyon Lyon France
| | - Thibault Gayet
- UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, CNRS, Université Lyon 1 Université de Lyon Lyon France
- Unité Cervidés Sangliers Office National de la Chasse et de la Faune Sauvage Birieux France
| | - Gilles Escarguel
- UMR5023 Ecologie des Hydrosystèmes Naturels et Anthropisés, CNRS, Université Lyon 1, ENTPE Université Lyon Lyon France
| | - Bernard Kaufmann
- UMR5023 Ecologie des Hydrosystèmes Naturels et Anthropisés, CNRS, Université Lyon 1, ENTPE Université Lyon Lyon France
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Wegener JE, Pita‐Aquino JN, Atutubo J, Moreno A, Kolbe JJ. Hybridization and rapid differentiation after secondary contact between the native green anole ( Anolis carolinensis) and the introduced green anole ( Anolis porcatus). Ecol Evol 2019; 9:4138-4148. [PMID: 31015994 PMCID: PMC6468060 DOI: 10.1002/ece3.5042] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2018] [Revised: 02/06/2019] [Accepted: 02/12/2019] [Indexed: 11/24/2022] Open
Abstract
In allopatric species, reproductive isolation evolves through the accumulation of genetic incompatibilities. The degree of divergence required for complete reproductive isolation is highly variable across taxa, which makes the outcome of secondary contact between allopatric species unpredictable. Since before the Pliocene, two species of Anolis lizards, Anolis carolinensis and Anolis porcatus, have been allopatric, yet this period of independent evolution has not led to substantial species-specific morphological differentiation, and therefore, they might not be reproductively isolated. In this study, we determined the genetic consequences of localized, secondary contact between the native green anole, A. carolinensis, and the introduced Cuban green anole, A. porcatus, in South Miami. Using 18 microsatellite markers, we found that the South Miami population formed a genetic cluster distinct from both parental species. Mitochondrial DNA revealed maternal A. porcatus ancestry for 35% of the individuals sampled from this population, indicating a high degree of cytonuclear discordance. Thus, hybridization with A. porcatus, not just population structure within A. carolinensis, may be responsible for the genetic distinctiveness of this population. Using tree-based maximum-likelihood analysis, we found support for a more recent, secondary introduction of A. porcatus to Florida. Evidence that ~33% of the nuclear DNA resulted from a secondary introduction supports the hybrid origin of the green anole population in South Miami. We used multiple lines of evidence and multiple genetic markers to reconstruct otherwise cryptic patterns of species introduction and hybridization. Genetic evidence for a lack of reproductive isolation, as well as morphological similarities between the two species, supports revising the taxonomy of A. carolinensis to include A. porcatus from western Cuba. Future studies should target the current geographic extent of introgression originating from the past injection of genetic material from Cuban green anoles and determine the consequences for the evolutionary trajectory of green anole populations in southern Florida.
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Affiliation(s)
- Johanna E. Wegener
- Department of Biological SciencesUniversity of Rhode IslandKingstonRhode Island
| | | | - Jessica Atutubo
- Department of Biological SciencesUniversity of Rhode IslandKingstonRhode Island
| | - Adam Moreno
- Department of Ecology and Evolutionary BiologyBrown UniversityProvidenceRhode Island
- Present address:
College of Veterinary MedicineOhio State UniversityColumbusOhio
| | - Jason J. Kolbe
- Department of Biological SciencesUniversity of Rhode IslandKingstonRhode Island
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11
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Ottenburghs J. Exploring the hybrid speciation continuum in birds. Ecol Evol 2018; 8:13027-13034. [PMID: 30619602 PMCID: PMC6308868 DOI: 10.1002/ece3.4558] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Revised: 08/28/2018] [Accepted: 08/29/2018] [Indexed: 01/03/2023] Open
Abstract
Hybridization is increasingly recognized as a creative evolutionary force contributing to adaptation and speciation. Homoploid hybrid speciation-the process in which hybridization results in a stable, fertile, and reproductively isolated hybrid lineage where there is no change in ploidy-has been documented in several taxa. Hybridization can directly contribute to reproductive isolation or reinforce it at a later stage. Alternatively, hybridization might not be related to the evolution of reproductive isolation. To account for these different scenarios, I propose to discriminate between two types of hybrid speciation: type I where reproductive isolation is a direct consequence of hybridization and type II where it is the by-product of other processes. I illustrate the applicability of this classification scheme with avian examples. To my knowledge, seven hybrid bird species have been proposed: Italian sparrow, Audubon's warbler, Genovesa mockingbird, Hawaiian duck, red-breasted goose, golden-crowned manakin, and a recent lineage of Darwin's finches on the island of Daphne Major ("Big Bird"). All studies provide convincing evidence for hybridization, but do not always confidently discriminate between scenarios of hybrid speciation and recurrent introgressive hybridization. The build-up of reproductive isolation between the hybrid species and their parental taxa is mainly driven by premating isolation mechanisms and comparable to classical speciation events. One hybrid species can be classified as type I ("Big Bird") while three species constitute type II hybrid species (Italian sparrow, Audubon's warbler, and golden-crowned manakin). The diversity in hybrid bird species across a range of divergence times also provides an excellent opportunity to study the evolution of hybrid genomes in terms of genome stabilization and adaptation.
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Affiliation(s)
- Jente Ottenburghs
- Resource Ecology GroupWageningen UniversityWageningenThe Netherlands
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12
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Runemark A, Fernández LP, Eroukhmanoff F, Sætre GP. Genomic Contingencies and the Potential for Local Adaptation in a Hybrid Species. Am Nat 2018; 192:10-22. [DOI: 10.1086/697563] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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13
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Hendry AP, Gotanda KM, Svensson EI. Human influences on evolution, and the ecological and societal consequences. Philos Trans R Soc Lond B Biol Sci 2017; 372:rstb.2016.0028. [PMID: 27920373 DOI: 10.1098/rstb.2016.0028] [Citation(s) in RCA: 154] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/27/2016] [Indexed: 01/08/2023] Open
Abstract
Humans have dramatic, diverse and far-reaching influences on the evolution of other organisms. Numerous examples of this human-induced contemporary evolution have been reported in a number of 'contexts', including hunting, harvesting, fishing, agriculture, medicine, climate change, pollution, eutrophication, urbanization, habitat fragmentation, biological invasions and emerging/disappearing diseases. Although numerous papers, journal special issues and books have addressed each of these contexts individually, the time has come to consider them together and thereby seek important similarities and differences. The goal of this special issue, and this introductory paper, is to promote and expand this nascent integration. We first develop predictions as to which human contexts might cause the strongest and most consistent directional selection, the greatest changes in evolutionary potential, the greatest genetic (as opposed to plastic) changes and the greatest effects on evolutionary diversification We then develop predictions as to the contexts where human-induced evolutionary changes might have the strongest effects on the population dynamics of the focal evolving species, the structure of their communities, the functions of their ecosystems and the benefits and costs for human societies. These qualitative predictions are intended as a rallying point for broader and more detailed future discussions of how human influences shape evolution, and how that evolution then influences species traits, biodiversity, ecosystems and humans.This article is part of the themed issue 'Human influences on evolution, and the ecological and societal consequences'.
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Affiliation(s)
- Andrew P Hendry
- Redpath Museum and Department of Biology, McGill University, 859 Sherbrooke Street West, Montréal, Québec, Canada H3A OC4
| | - Kiyoko M Gotanda
- Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
| | - Erik I Svensson
- Evolutionary Ecology Unit, Department of Biology, Lund University, Lund 223 62, Sweden
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14
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Transgenerational selection driven by divergent ecological impacts of hybridizing lineages. Nat Ecol Evol 2017; 1:1757-1765. [DOI: 10.1038/s41559-017-0308-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2016] [Accepted: 08/09/2017] [Indexed: 01/16/2023]
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15
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Introgression from non-native species unveils a hidden threat to the migratory Neotropical fish Prochilodus hartii. Biol Invasions 2017. [DOI: 10.1007/s10530-017-1556-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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16
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Tseng M. The Effect of Parasitism and Interpopulation Hybridization on Aedes albopictus (Diptera: Culicidae) Fitness. JOURNAL OF MEDICAL ENTOMOLOGY 2017; 54:1236-1242. [PMID: 28419266 DOI: 10.1093/jme/tjx075] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2016] [Indexed: 06/07/2023]
Abstract
Recent research in mosquito population genetics suggests that interpopulation hybridization has likely contributed to the rapid spread of the container-breeding mosquitoes. Here, I used laboratory experiments to investigate whether interpopulation Aedes (Stegomyia) albopictus (Skuse) F1 and F2 hybrids exhibit higher fitness than parental populations, and whether hybrid mosquito performance is related to infection by the coevolved protozoan parasite Ascogregarina taiwanensis (Lien and Levine). Overall, there were significant differences in development time, wing length, and survival between the two parental mosquito populations, but no difference in per capita growth rate r. Hybrid mosquitoes were generally intermediate in phenotype to the parentals, except that F2 females were significantly larger than the midparent average. In addition, As. taiwanensis parasites produced fewest oocysts when they were reared in hosts of hybrid origin. These data suggest that hybridization between previously isolated mosquito populations can result in slight increases in potential mosquito reproductive success, via increased hybrid body size, and via the temporary escape from coevolved parasites. These findings are significant because studies have shown that even slight hybrid vigor can have positive fitness consequences for population persistence. Although this was a laboratory experiment extending only to the F2 generation, many other invasive insects also carry coevolved parasites, and thus the patterns seen in this mosquito system may be broadly relevant.
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Affiliation(s)
- Michelle Tseng
- Department of Zoology, University of British Columbia, 4200-6270 University Blvd., Vancouver, BC, V6T 1Z4
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17
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Vicente JL, Clarkson CS, Caputo B, Gomes B, Pombi M, Sousa CA, Antao T, Dinis J, Bottà G, Mancini E, Petrarca V, Mead D, Drury E, Stalker J, Miles A, Kwiatkowski DP, Donnelly MJ, Rodrigues A, Torre AD, Weetman D, Pinto J. Massive introgression drives species radiation at the range limit of Anopheles gambiae. Sci Rep 2017; 7:46451. [PMID: 28417969 PMCID: PMC5394460 DOI: 10.1038/srep46451] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2016] [Accepted: 03/17/2017] [Indexed: 12/30/2022] Open
Abstract
Impacts of introgressive hybridisation may range from genomic erosion and species collapse to rapid adaptation and speciation but opportunities to study these dynamics are rare. We investigated the extent, causes and consequences of a hybrid zone between Anopheles coluzzii and Anopheles gambiae in Guinea-Bissau, where high hybridisation rates appear to be stable at least since the 1990s. Anopheles gambiae was genetically partitioned into inland and coastal subpopulations, separated by a central region dominated by A. coluzzii. Surprisingly, whole genome sequencing revealed that the coastal region harbours a hybrid form characterised by an A. gambiae-like sex chromosome and massive introgression of A. coluzzii autosomal alleles. Local selection on chromosomal inversions may play a role in this process, suggesting potential for spatiotemporal stability of the coastal hybrid form and providing resilience against introgression of medically-important loci and traits, found to be more prevalent in inland A. gambiae.
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Affiliation(s)
- José L Vicente
- Global Health and Tropical Medicine, GHTM, Instituto de Higiene e Medicina Tropical, IHMT, Universidade Nova de Lisboa, UNL, Lisbon, Portugal
| | - Christopher S Clarkson
- Department of Vector Biology, Liverpool School of Tropical Medicine, Liverpool, United Kingdom
| | - Beniamino Caputo
- Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Dipartimento di Sanità Pubblica e Malattie Infettive, Università di Roma "Sapienza", Rome, Italy
| | - Bruno Gomes
- Global Health and Tropical Medicine, GHTM, Instituto de Higiene e Medicina Tropical, IHMT, Universidade Nova de Lisboa, UNL, Lisbon, Portugal
| | - Marco Pombi
- Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Dipartimento di Sanità Pubblica e Malattie Infettive, Università di Roma "Sapienza", Rome, Italy
| | - Carla A Sousa
- Global Health and Tropical Medicine, GHTM, Instituto de Higiene e Medicina Tropical, IHMT, Universidade Nova de Lisboa, UNL, Lisbon, Portugal
| | - Tiago Antao
- Department of Vector Biology, Liverpool School of Tropical Medicine, Liverpool, United Kingdom
| | - João Dinis
- Instituto Nacional de Saúde Pública, Ministério da Saúde Pública, Bissau, Guiné-Bissau
| | - Giordano Bottà
- Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Dipartimento di Sanità Pubblica e Malattie Infettive, Università di Roma "Sapienza", Rome, Italy.,Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom
| | - Emiliano Mancini
- Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Dipartimento di Sanità Pubblica e Malattie Infettive, Università di Roma "Sapienza", Rome, Italy
| | - Vincenzo Petrarca
- Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Dipartimento di Sanità Pubblica e Malattie Infettive, Università di Roma "Sapienza", Rome, Italy.,Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Dipartimento di Biologia e Biotecnologie "Charles Darwin", Università di Roma "Sapienza", Rome, Italy
| | - Daniel Mead
- Wellcome Trust Sanger Institute, Hinxton, UK
| | | | | | - Alistair Miles
- Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.,Medical Research Council Centre for Genomics and Global Health, University of Oxford, Oxford, UK
| | - Dominic P Kwiatkowski
- Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.,Wellcome Trust Sanger Institute, Hinxton, UK.,Medical Research Council Centre for Genomics and Global Health, University of Oxford, Oxford, UK
| | - Martin J Donnelly
- Department of Vector Biology, Liverpool School of Tropical Medicine, Liverpool, United Kingdom
| | - Amabélia Rodrigues
- Instituto Nacional de Saúde Pública, Ministério da Saúde Pública, Bissau, Guiné-Bissau
| | - Alessandra Della Torre
- Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Dipartimento di Sanità Pubblica e Malattie Infettive, Università di Roma "Sapienza", Rome, Italy
| | - David Weetman
- Department of Vector Biology, Liverpool School of Tropical Medicine, Liverpool, United Kingdom
| | - João Pinto
- Global Health and Tropical Medicine, GHTM, Instituto de Higiene e Medicina Tropical, IHMT, Universidade Nova de Lisboa, UNL, Lisbon, Portugal
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18
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Leal MC, Best RJ, Durston D, El-Sabaawi RW, Matthews B. Stoichiometric traits of stickleback: Effects of genetic background, rearing environment, and ontogeny. Ecol Evol 2017; 7:2617-2625. [PMID: 28428852 PMCID: PMC5395448 DOI: 10.1002/ece3.2802] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2016] [Revised: 12/27/2016] [Accepted: 01/18/2017] [Indexed: 01/18/2023] Open
Abstract
Phenotypes can both evolve in response to, and affect, ecosystem change, but few examples of diverging ecosystem‐effect traits have been investigated. Bony armor traits of fish are good candidates for this because they evolve rapidly in some freshwater fish populations, and bone is phosphorus rich and likely to affect nutrient recycling in aquatic ecosystems. Here, we explore how ontogeny, rearing environment, and bone allocation among body parts affect the stoichiometric phenotype (i.e., stoichiometric composition of bodies and excretion) of threespine stickleback. We use two populations from distinct freshwater lineages with contrasting lateral plating phenotypes (full vs. low plating) and their hybrids, which are mostly fully plated. We found that ontogeny, rearing environment, and body condition were the most important predictors of organismal stoichiometry. Although elemental composition was similar between both populations and their hybrids, we found significant divergence in phosphorus allocation among body parts and in phosphorus excretion rates. Overall, body armor differences did not explain variation in whole body phosphorus, phosphorus allocation, or phosphorus excretion. Evolutionary divergence between these lineages in both allocation and excretion is likely to have important direct consequences for ecosystems, but may be mediated by evolution of multiple morphological or physiological traits beyond plating phenotype.
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Affiliation(s)
- Miguel Costa Leal
- Department of Fish Ecology and Evolution Eawag: Swiss Federal Institute of Aquatic Science and Technology Centre for Ecology, Evolution and Biogeochemistry Kastanienbaum Switzerland
| | - Rebecca J Best
- Department of Fish Ecology and Evolution Eawag: Swiss Federal Institute of Aquatic Science and Technology Centre for Ecology, Evolution and Biogeochemistry Kastanienbaum Switzerland.,Department of Aquatic Ecology Eawag: Swiss Federal Institute of Aquatic Science and Technology Centre for Ecology, Evolution and Biogeochemistry Kastanienbaum Switzerland
| | - Dan Durston
- Department of Biology University of Victoria Victoria BC Canada
| | | | - Blake Matthews
- Department of Aquatic Ecology Eawag: Swiss Federal Institute of Aquatic Science and Technology Centre for Ecology, Evolution and Biogeochemistry Kastanienbaum Switzerland
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19
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Sullam KE, Matthews B, Aebischer T, Seehausen O, Bürgmann H. The effect of top-predator presence and phenotype on aquatic microbial communities. Ecol Evol 2017; 7:1572-1582. [PMID: 28261466 PMCID: PMC5330871 DOI: 10.1002/ece3.2784] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2016] [Revised: 01/04/2017] [Accepted: 01/11/2017] [Indexed: 11/08/2022] Open
Abstract
The presence of predators can impact a variety of organisms within the ecosystem, including microorganisms. Because the effects of fish predators and their phenotypic differences on microbial communities have not received much attention, we tested how the presence/absence, genotype, and plasticity of the predatory three‐spine stickleback (Gasterosteus aculeatus) influence aquatic microbes in outdoor mesocosms. We reared lake and stream stickleback genotypes on contrasting food resources to adulthood, and then added them to aquatic mesocosm ecosystems to assess their impact on the planktonic bacterial community. We also investigated whether the effects of fish persisted following the removal of adults, and the subsequent addition of a homogenous juvenile fish population. The presence of adult stickleback increased the number of bacterial OTUs and altered the size structure of the microbial community, whereas their phenotype affected bacterial community composition. Some of these effects were detectable after adult fish were removed from the mesocosms, and after juvenile fish were placed in the tanks, most of these effects disappeared. Our results suggest that fish can have strong short‐term effects on microbial communities that are partially mediated by phenotypic variation of fish.
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Affiliation(s)
- Karen E Sullam
- Department of Surface Waters-Research and Management Center for Ecology, Evolution and Biogeochemistry Eawag Swiss Federal Institute of Aquatic Science and Technology Kastanienbaum Switzerland; Zoological Institute University of Basel Basel Switzerland
| | - Blake Matthews
- Eawag Aquatic Ecology Department Center for Ecology, Evolution and Biogeochemistry Kastanienbaum Switzerland
| | - Thierry Aebischer
- Eawag Department of Fish Ecology and Evolution Center for Ecology, Evolution and Biogeochemistry Kastanienbaum Switzerland; Aquatic Ecology and Evolution Institute of Ecology & Evolution University of Bern Bern Switzerland; Department of Biology University of Fribourg Fribourg Switzerland
| | - Ole Seehausen
- Eawag Department of Fish Ecology and Evolution Center for Ecology, Evolution and Biogeochemistry Kastanienbaum Switzerland; Aquatic Ecology and Evolution Institute of Ecology & Evolution University of Bern Bern Switzerland
| | - Helmut Bürgmann
- Department of Surface Waters-Research and Management Center for Ecology, Evolution and Biogeochemistry Eawag Swiss Federal Institute of Aquatic Science and Technology Kastanienbaum Switzerland
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20
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Le Gros A, Clergeau P, Zuccon D, Cornette R, Mathys B, Samadi S. Invasion history and demographic processes associated with rapid morphological changes in the Red-whiskered bulbul established on tropical islands. Mol Ecol 2016; 25:5359-5376. [DOI: 10.1111/mec.13853] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2015] [Revised: 07/22/2016] [Accepted: 09/04/2016] [Indexed: 11/26/2022]
Affiliation(s)
- Ariane Le Gros
- Sorbonne Paris Cité; Université Paris Diderot; 5 Rue Thomas Mann 75013 Paris France
- MNHN; CNRS; UPMC; CP51; Centre d'Ecologie et des Sciences de la Conservation (CESCO UMR7204); Sorbonne Universités; 55 rue Buffon 75005 Paris France
- MNHN; CNRS; UPMC; CP26; Institut de Systématique; Evolution; Biodiversité (ISYEB UMR 7205); Sorbonne Universités; 57 rue Cuvier 75005 Paris France
| | - Philippe Clergeau
- MNHN; CNRS; UPMC; CP51; Centre d'Ecologie et des Sciences de la Conservation (CESCO UMR7204); Sorbonne Universités; 55 rue Buffon 75005 Paris France
| | - Dario Zuccon
- MNHN; CNRS; UPMC; CP26; Institut de Systématique; Evolution; Biodiversité (ISYEB UMR 7205); Sorbonne Universités; 57 rue Cuvier 75005 Paris France
| | - Raphaël Cornette
- MNHN; CNRS; UPMC; CP26; Institut de Systématique; Evolution; Biodiversité (ISYEB UMR 7205); Sorbonne Universités; 57 rue Cuvier 75005 Paris France
| | - Blake Mathys
- Division of Mathematics; Computer and Natural Sciences; Ohio Dominican University; Columbus OH 43219 USA
| | - Sarah Samadi
- MNHN; CNRS; UPMC; CP26; Institut de Systématique; Evolution; Biodiversité (ISYEB UMR 7205); Sorbonne Universités; 57 rue Cuvier 75005 Paris France
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21
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Martin CH. The cryptic origins of evolutionary novelty: 1000-fold faster trophic diversification rates without increased ecological opportunity or hybrid swarm. Evolution 2016; 70:2504-2519. [PMID: 27593215 DOI: 10.1111/evo.13046] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2016] [Revised: 08/10/2016] [Accepted: 08/18/2016] [Indexed: 01/15/2023]
Abstract
Ecological opportunity is frequently proposed as the sole ingredient for adaptive radiation into novel niches. An additional trigger may be genome-wide hybridization resulting from "hybrid swarm." However, these hypotheses have been difficult to test due to the rarity of comparable control environments lacking adaptive radiations. Here I exploit such a pattern in microendemic radiations of Caribbean pupfishes. I show that a sympatric three species radiation on San Salvador Island, Bahamas diversified 1445 times faster than neighboring islands in jaw length due to the evolution of a novel scale-eating adaptive zone from a generalist ancestral niche. I then sampled 22 generalist populations on seven neighboring islands and measured morphological diversity, stomach content diversity, dietary isotopic diversity, genetic diversity, lake/island areas, macroalgae richness, and Caribbean-wide patterns of gene flow. None of these standard metrics of ecological opportunity or gene flow were associated with adaptive radiation, except for slight increases in macroalgae richness. Thus, exceptional trophic diversification is highly localized despite myriad generalist populations in comparable environmental and genetic backgrounds. This study provides a strong counterexample to the ecological and hybrid swarm theories of adaptive radiation and suggests that diversification of novel specialists on a sparse fitness landscape is constrained by more than ecological opportunity and gene flow.
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Affiliation(s)
- Christopher H Martin
- Department of Biology, University of North Carolina at Chapel Hill, Campus Box 3280, 120 South Road, Chapel Hill, North Carolina, 27599-3280.
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22
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Marques DA, Lucek K, Haesler MP, Feller AF, Meier JI, Wagner CE, Excoffier L, Seehausen O. Genomic landscape of early ecological speciation initiated by selection on nuptial colour. Mol Ecol 2016; 26:7-24. [DOI: 10.1111/mec.13774] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2016] [Revised: 06/30/2016] [Accepted: 07/14/2016] [Indexed: 12/12/2022]
Affiliation(s)
- David Alexander Marques
- Institute of Ecology & Evolution; University of Bern; Bern Switzerland
- Eawag: Swiss Federal Institute of Aquatic Science and Technology; Kastanienbaum Switzerland
| | - Kay Lucek
- Institute of Ecology & Evolution; University of Bern; Bern Switzerland
- Eawag: Swiss Federal Institute of Aquatic Science and Technology; Kastanienbaum Switzerland
- University of Sheffield; Sheffield UK
| | - Marcel Philipp Haesler
- Institute of Ecology & Evolution; University of Bern; Bern Switzerland
- Eawag: Swiss Federal Institute of Aquatic Science and Technology; Kastanienbaum Switzerland
| | - Anna Fiona Feller
- Institute of Ecology & Evolution; University of Bern; Bern Switzerland
- Eawag: Swiss Federal Institute of Aquatic Science and Technology; Kastanienbaum Switzerland
| | - Joana Isabel Meier
- Institute of Ecology & Evolution; University of Bern; Bern Switzerland
- Eawag: Swiss Federal Institute of Aquatic Science and Technology; Kastanienbaum Switzerland
| | - Catherine E. Wagner
- Institute of Ecology & Evolution; University of Bern; Bern Switzerland
- Eawag: Swiss Federal Institute of Aquatic Science and Technology; Kastanienbaum Switzerland
- Department of Botany, Biodiversity Institute; University of Wyoming; Laramie WY USA
| | - Laurent Excoffier
- Institute of Ecology & Evolution; University of Bern; Bern Switzerland
- Swiss Institute of Bioinformatics; Lausanne Switzerland
| | - Ole Seehausen
- Institute of Ecology & Evolution; University of Bern; Bern Switzerland
- Eawag: Swiss Federal Institute of Aquatic Science and Technology; Kastanienbaum Switzerland
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23
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Genome-wide SNP data suggest complex ancestry of sympatric North Pacific killer whale ecotypes. Heredity (Edinb) 2016; 117:316-325. [PMID: 27485668 DOI: 10.1038/hdy.2016.54] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2016] [Revised: 06/17/2016] [Accepted: 06/21/2016] [Indexed: 02/07/2023] Open
Abstract
Three ecotypes of killer whale occur in partial sympatry in the North Pacific. Individuals assortatively mate within the same ecotype, resulting in correlated ecological and genetic differentiation. A key question is whether this pattern of evolutionary divergence is an example of incipient sympatric speciation from a single panmictic ancestral population, or whether sympatry could have resulted from multiple colonisations of the North Pacific and secondary contact between ecotypes. Here, we infer multilocus coalescent trees from >1000 nuclear single-nucleotide polymorphisms (SNPs) and find evidence of incomplete lineage sorting so that the genealogies of SNPs do not all conform to a single topology. To disentangle whether uncertainty in the phylogenetic inference of the relationships among ecotypes could also result from ancestral admixture events we reconstructed the relationship among the ecotypes as an admixture graph and estimated f4-statistics using TreeMix. The results were consistent with episodes of admixture between two of the North Pacific ecotypes and the two outgroups (populations from the Southern Ocean and the North Atlantic). Gene flow may have occurred via unsampled 'ghost' populations rather than directly between the populations sampled here. Our results indicate that because of ancestral admixture events and incomplete lineage sorting, a single bifurcating tree does not fully describe the relationship among these populations. The data are therefore most consistent with the genomic variation among North Pacific killer whale ecotypes resulting from multiple colonisation events, and secondary contact may have facilitated evolutionary divergence. Thus, the present-day populations of North Pacific killer whale ecotypes have a complex ancestry, confounding the tree-based inference of ancestral geography.
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24
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Puppo P, Curto M, Meimberg H. Genetic structure of Micromeria (Lamiaceae) in Tenerife, the imprint of geological history and hybridization on within-island diversification. Ecol Evol 2016; 6:3443-3460. [PMID: 28725348 PMCID: PMC5513284 DOI: 10.1002/ece3.2094] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2015] [Revised: 02/26/2016] [Accepted: 03/03/2016] [Indexed: 01/17/2023] Open
Abstract
Geological history of oceanic islands can have a profound effect on the evolutionary history of insular flora, especially in complex islands such as Tenerife in the Canary Islands. Tenerife results from the secondary connection of three paleo‐islands by a central volcano, and other geological events that further shaped it. This geological history has been shown to influence the phylogenetic history of several taxa, including genus Micromeria (Lamiaceae). Screening 15 microsatellite markers in 289 individuals representing the eight species of Micromeria present in Tenerife, this study aims to assess the genetic diversity and structure of these species and its relation with the geological events on the island. In addition, we evaluate the extent of hybridization among species and discuss its influence on the speciation process. We found that the species restricted to the paleo‐islands present lower levels of genetic diversity but the highest levels of genetic differentiation suggesting that their ranges might have contracted over time. The two most widespread species in the island, M. hyssopifolia and M. varia, present the highest genetic diversity levels and a genetic structure that seems correlated with the geological composition of the island. Samples from M. hyssopifolia from the oldest paleo‐island, Adeje, appear as distinct while samples from M. varia segregate into two main clusters corresponding to the paleo‐islands of Anaga and Teno. Evidence of hybridization and intraspecific migration between species was found. We argue that species boundaries would be retained despite hybridization in response to the habitat's specific conditions causing postzygotic isolation and preserving morphological differentiation.
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Affiliation(s)
- Pamela Puppo
- CIBIO Research Center in Biodiversity and Genetic Resources/InBio Associated Laboratory University of Porto Campus Vairão Vairão 4485-661 Portugal.,Institute for Integrative Nature Conservation Research University of Natural Resources and Life Sciences A-1180 Vienna Austria
| | - Manuel Curto
- CIBIO Research Center in Biodiversity and Genetic Resources/InBio Associated Laboratory University of Porto Campus Vairão Vairão 4485-661 Portugal.,Institute for Integrative Nature Conservation Research University of Natural Resources and Life Sciences A-1180 Vienna Austria
| | - Harald Meimberg
- Institute for Integrative Nature Conservation Research University of Natural Resources and Life Sciences A-1180 Vienna Austria
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25
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Marques DA, Lucek K, Meier JI, Mwaiko S, Wagner CE, Excoffier L, Seehausen O. Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback. PLoS Genet 2016; 12:e1005887. [PMID: 26925837 PMCID: PMC4771382 DOI: 10.1371/journal.pgen.1005887] [Citation(s) in RCA: 147] [Impact Index Per Article: 18.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2015] [Accepted: 01/29/2016] [Indexed: 01/18/2023] Open
Abstract
Ecological speciation is the process by which reproductively isolated populations emerge as a consequence of divergent natural or ecologically-mediated sexual selection. Most genomic studies of ecological speciation have investigated allopatric populations, making it difficult to infer reproductive isolation. The few studies on sympatric ecotypes have focused on advanced stages of the speciation process after thousands of generations of divergence. As a consequence, we still do not know what genomic signatures of the early onset of ecological speciation look like. Here, we examined genomic differentiation among migratory lake and resident stream ecotypes of threespine stickleback reproducing in sympatry in one stream, and in parapatry in another stream. Importantly, these ecotypes started diverging less than 150 years ago. We obtained 34,756 SNPs with restriction-site associated DNA sequencing and identified genomic islands of differentiation using a Hidden Markov Model approach. Consistent with incipient ecological speciation, we found significant genomic differentiation between ecotypes both in sympatry and parapatry. Of 19 islands of differentiation resisting gene flow in sympatry, all were also differentiated in parapatry and were thus likely driven by divergent selection among habitats. These islands clustered in quantitative trait loci controlling divergent traits among the ecotypes, many of them concentrated in one region with low to intermediate recombination. Our findings suggest that adaptive genomic differentiation at many genetic loci can arise and persist in sympatry at the very early stage of ecotype divergence, and that the genomic architecture of adaptation may facilitate this.
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Affiliation(s)
- David A. Marques
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
- Computational and Molecular Population Genetics Lab, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- * E-mail:
| | - Kay Lucek
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
- Department of Animal and Plant Science, University of Sheffield, Sheffield, United Kingdom
| | - Joana I. Meier
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
- Computational and Molecular Population Genetics Lab, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
| | - Salome Mwaiko
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
| | - Catherine E. Wagner
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
- Biodiversity Institute, University of Wyoming, Wyoming, United States of America
| | - Laurent Excoffier
- Computational and Molecular Population Genetics Lab, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Swiss Institute of Bioinformatics, Lausanne, Switzerland
| | - Ole Seehausen
- Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
- Department of Fish Ecology and Evolution, Centre of Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland
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