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Yang Z, Zhang Z, Long X, Shi X, Wang D, Peng D, Ye S, Ding Z. Clarifying the Functional Role of Serotonin in Meloidogyne graminicola Host Plant Parasitism by Immunolocalization and RNA Interference. PHYTOPATHOLOGY 2024; 114:1401-1410. [PMID: 38148161 DOI: 10.1094/phyto-08-23-0290-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2023]
Abstract
Serotonin (5-hydroxytryptamine) is an essential neurotransmitter involved in regulating various behaviors in plant-parasitic nematodes, including locomotion, egg laying, feeding, and mating. However, the functional role of serotonin in root-knot nematode invasion of host plants and the molecular mechanisms underlying feeding behavior remain poorly understood. In this study, we tested the effects of exogenous serotonin and the pharmacological compounds fluoxetine and methiothepin on the feeding behaviors of Meloidogyne graminicola. Our results suggested that M. graminicola possesses an endogenous serotonin signaling pathway and that serotonin plays a crucial role in modulating feeding behaviors in M. graminicola second-stage juveniles. We also identified and cloned the serotonin synthesis enzyme tryptophan hydroxylase (Mg-tph-1) in M. graminicola and investigated the role of endogenous serotonin by generating RNA interference nematodes in Mg-tph-1. Silencing Mg-tph-1 substantially reduced nematode invasion, development, and reproduction. According to the immunostaining results, we speculated that these serotonin immunoreactive cells near the nerve ring in M. graminicola are likely homologous to Caenorhabditis elegans ADFs, NSMs, and RIH serotonergic neurons. Furthermore, we investigated the impact of phytoserotonin on nematode invasion and development in rice by overexpressing OsTDC-3 or supplementing rice plants with tryptamine and found that an increase in phytoserotonin increases nematode pathogenicity. Overall, our study provides insights into the essential role of serotonin in M. graminicola host plant parasitism and proposes that the serotonergic signaling pathway could be a potential target for controlling plant-parasitic nematodes.
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Affiliation(s)
- Zhuhong Yang
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, P.R. China
- Hunan Provincial Engineering and Technology Research Center for Biopesticide and Formulation Processing, Changsha 410128, P.R. China
| | - Zixu Zhang
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, P.R. China
| | - Xiping Long
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, P.R. China
| | - Xuqi Shi
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, P.R. China
| | - Di Wang
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, P.R. China
| | - Deliang Peng
- State Key Laboratory for Biology of Plant Diseases and Insect Pests/Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, P.R. China
| | - Shan Ye
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, P.R. China
- Hunan Provincial Engineering and Technology Research Center for Biopesticide and Formulation Processing, Changsha 410128, P.R. China
| | - Zhong Ding
- College of Plant Protection, Hunan Agricultural University, Changsha 410128, P.R. China
- Hunan Provincial Engineering and Technology Research Center for Biopesticide and Formulation Processing, Changsha 410128, P.R. China
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Liu J, Zhang J, Wei Y, Su W, Li W, Wang B, Peng D, Gheysen G, Peng H, Dai L. The nematode effector calreticulin competes with the high mobility group protein OsHMGB1 for binding to the rice calmodulin-like protein OsCML31 to enhance rice susceptibility to Meloidogyne graminicola. PLANT, CELL & ENVIRONMENT 2024; 47:1732-1746. [PMID: 38311858 DOI: 10.1111/pce.14848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 01/22/2024] [Accepted: 01/24/2024] [Indexed: 02/06/2024]
Abstract
The root-knot nematode Meloidogyne graminicola secretes effectors into rice tissues to modulate host immunity. Here, we characterised MgCRT1, a calreticulin protein of M. graminicola, and identified its target in the plant. In situ hybridisation showed MgCRT1 mRNA accumulating in the subventral oesophageal gland in J2 nematodes. Immunolocalization indicated MgCRT1 localises in the giant cells during parasitism. Host-induced gene silencing of MgCRT1 reduced the infection ability of M. graminicola, while over-expressing MgCRT1 enhanced rice susceptibility to M. graminicola. A yeast two-hybrid approach identified the calmodulin-like protein OsCML31 as an interactor of MgCRT1. OsCML31 interacts with the high mobility group protein OsHMGB1 which is a conserved DNA binding protein. Knockout of OsCML31 or overexpression of OsHMGB1 in rice results in enhanced susceptibility to M. graminicola. In contrast, overexpression of OsCML31 or knockout of OsHMGB1 in rice decreases susceptibility to M. graminicola. The GST-pulldown and luciferase complementation imaging assay showed that MgCRT1 decreases the interaction of OsCML31 and OsHMGB1 in a competitive manner. In conclusion, when M. graminicola infects rice and secretes MgCRT1 into rice, MgCRT1 interacts with OsCML31 and decreases the association of OsCML31 with OsHMGB1, resulting in the release of OsHMGB1 to enhance rice susceptibility.
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Affiliation(s)
- Jing Liu
- Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, Hunan, China
- Department of Molecular Biotechnology, Ghent University, Ghent, Belgium
| | - Jiaqian Zhang
- Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, Hunan, China
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Ying Wei
- Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, Hunan, China
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Wen Su
- Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, Hunan, China
| | - Wei Li
- Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, Hunan, China
| | - Bing Wang
- Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, Hunan, China
| | - Deliang Peng
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Godelieve Gheysen
- Department of Molecular Biotechnology, Ghent University, Ghent, Belgium
| | - Huan Peng
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Liangying Dai
- Key Laboratory for Biology and Control of Plant Diseases and Insect Pests, College of Plant Protection, Hunan Agricultural University, Changsha, Hunan, China
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Wang Z, Wang W, Wu W, Wang H, Zhang S, Ye C, Guo L, Wei Z, Huang H, Liu Y, Zhu S, Zhu Y, Wang Y, He X. Integrated analysis of transcriptome, metabolome, and histochemistry reveals the response mechanisms of different ages Panax notoginseng to root-knot nematode infection. FRONTIERS IN PLANT SCIENCE 2023; 14:1258316. [PMID: 37780502 PMCID: PMC10539906 DOI: 10.3389/fpls.2023.1258316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 08/24/2023] [Indexed: 10/03/2023]
Abstract
Panax notoginseng (P. notoginseng) is an invaluable perennial medicinal herb. However, the roots of P. notoginseng are frequently subjected to severe damage caused by root-knot nematode (RKN) infestation. Although we have observed that P. notoginseng possessed adult-plant resistance (APR) against RKN disease, the defense response mechanisms against RKN disease in different age groups of P. notoginseng remain unexplored. We aimed to elucidate the response mechanisms of P. notoginseng at different stages of development to RKN infection by employing transcriptome, metabolome, and histochemistry analyses. Our findings indicated that distinct age groups of P. notoginseng may activate the phenylpropanoid and flavonoid biosynthesis pathways in varying ways, leading to the synthesis of phenolics, flavonoids, lignin, and anthocyanin pigments as both the response and defense mechanism against RKN attacks. Specifically, one-year-old P. notoginseng exhibited resistance to RKN through the upregulation of 5-O-p-coumaroylquinic acid and key genes involved in monolignol biosynthesis, such as PAL, CCR, CYP73A, CYP98A, POD, and CAD. Moreover, two-year-old P. notoginseng enhanced the resistance by depleting chlorogenic acid and downregulating most genes associated with monolignol biosynthesis, while concurrently increasing cyanidin and ANR in flavonoid biosynthesis. Three-year-old P. notoginseng reinforced its resistance by significantly increasing five phenolic acids related to monolignol biosynthesis, namely p-coumaric acid, chlorogenic acid, 1-O-sinapoyl-D-glucose, coniferyl alcohol, and ferulic acid. Notably, P. notoginseng can establish a lignin barrier that restricted RKN to the infection site. In summary, P. notoginseng exhibited a potential ability to impede the further propagation of RKN through the accumulation or depletion of the compounds relevant to resistance within the phenylpropanoid and flavonoid pathways, as well as the induction of lignification in tissue cells.
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Affiliation(s)
- Zhuhua Wang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Wenpeng Wang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
- Academy of Science and Technology, Chuxiong Normal University, Chuxiong, Yunnan, China
| | - Wentao Wu
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Huiling Wang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Shuai Zhang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Chen Ye
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Liwei Guo
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Zhaoxia Wei
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Hongping Huang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Yixiang Liu
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Shusheng Zhu
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Youyong Zhu
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Yang Wang
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
| | - Xiahong He
- State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, Yunnan, China
- School of Landscape and Horticulture, Southwest Forestry University, Kunming, Yunnan, China
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Macharia TN, Duong TA, Moleleki LN. In silico secretome analyses of the polyphagous root-knot nematode Meloidogyne javanica: a resource for studying M. javanica secreted proteins. BMC Genomics 2023; 24:296. [PMID: 37264326 DOI: 10.1186/s12864-023-09366-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Accepted: 05/07/2023] [Indexed: 06/03/2023] Open
Abstract
BACKGROUND Plant-parasitic nematodes (PPNs) that cause most damage include root-knot nematodes (RKNs) which are a major impediment to crop production. Root-knot nematodes, like other parasites, secrete proteins which are required for parasite proliferation and survival within the host during the infection process. RESULTS Here, we used various computational tools to predict and identify classically and non-classically secreted proteins encoded in the Meloidogyne javanica genome. Furthermore, functional annotation analysis was performed using various integrated bioinformatic tools to determine the biological significance of the predicted secretome. In total, 7,458 proteins were identified as secreted ones. A large percentage of this secretome is comprised of small proteins of ≤ 300 aa sequence length. Functional analyses showed that M. javanica secretome comprises cell wall degrading enzymes for facilitating nematode invasion, and migration by disintegrating the complex plant cell wall components. In addition, peptidases and peptidase inhibitors are an important category of M. javanica secretome involved in compatible host-nematode interactions. CONCLUSION This study identifies the putative secretome encoded in the M. javanica genome. Future experimental validation analyses can greatly benefit from this global analysis of M. javanica secretome. Equally, our analyses will advance knowledge of the interaction between plants and nematodes.
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Affiliation(s)
- Teresia Nyambura Macharia
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa
| | - Tuan A Duong
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa
| | - Lucy Novungayo Moleleki
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa.
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Kumar A, Fitoussi N, Sanadhya P, Sichov N, Bucki P, Bornstein M, Belausuv E, Brown Miyara S. Two Candidate Meloidogyne javanica Effector Genes, MjShKT and MjPUT3: A Functional Investigation of Their Roles in Regulating Nematode Parasitism. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2023; 36:79-94. [PMID: 36324054 DOI: 10.1094/mpmi-10-22-0212-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
During parasitism, root-knot nematode Meloidogyne spp. inject molecules termed effectors that have multifunctional roles in construction and maintenance of nematode feeding sites. As an outcome of transcriptomic analysis of Meloidogyne javanica, we identified and characterized two differentially expressed genes encoding the predicted proteins MjShKT, carrying a Stichodactyla toxin (ShKT) domain, and MjPUT3, carrying a ground-like domain, both expressed during nematode parasitism of the tomato plant. Fluorescence in-situ hybridization revealed expression of MjShKT and MjPUT3 in the dorsal esophageal glands, suggesting their injection into host cells. MjShKT expression was upregulated during the parasitic life stages, to a maximum at the mature female stage, whereas MjPUT3 expression increased in third- to fourth-stage juveniles. Subcellular in-planta localization of MjShKT and MjPUT3 using a fused fluorescence marker indicated MjShKT co-occurrence with the endoplasmic reticulum, the perinuclear endoplasmatic reticulum, and the Golgi organelle markers, while MjPUT3 localized, to some extent, within the endoplasmatic reticulum and was clearly observed within the nucleoplasm. MjShKT inhibited programmed cell death induced by overexpression of MAPKKKα and Gpa2/RBP-1. Overexpression of MjShKT in tomato hairy roots allowed an increase in nematode reproduction, as indicated by the high number of eggs produced on roots overexpressing MjShKT. Roots overexpressing MjPUT3 were characterized by enhanced root growth, with no effect on nematode development on those roots. Investigation of the two candidate effectors suggested that MjShKT is mainly involved in manipulating the plant effector-triggered immune response toward establishment and maintenance of active feeding sites, whereas MjPUT3 might modulate roots morphology in favor of nematode fitness in the host roots. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
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Affiliation(s)
- Anil Kumar
- Department of Entomology, Nematology and Chemistry units, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan 50250, Israel
| | - Nathalia Fitoussi
- Department of Entomology, Nematology and Chemistry units, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan 50250, Israel
- Department of Plant Pathology and Microbiology, the Robert H. Smith Faculty of Agriculture, Food and Environment, the Hebrew University of Jerusalem, Rehovot 76100, Israel
| | - Payal Sanadhya
- Department of Entomology, Nematology and Chemistry units, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan 50250, Israel
| | - Natalia Sichov
- Department of Entomology, Nematology and Chemistry units, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan 50250, Israel
| | - Patricia Bucki
- Department of Entomology, Nematology and Chemistry units, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan 50250, Israel
| | - Menachem Bornstein
- Department of Plant Pathology and Weed Research, ARO, Volcani Center, Bet Dagan 50250, Israel
| | - Eduard Belausuv
- Department of Plant Sciences, ARO, Volcani Center, Bet Dagan 50250, Israel
| | - Sigal Brown Miyara
- Department of Entomology, Nematology and Chemistry units, Agricultural Research Organization (ARO), Volcani Center, Bet Dagan 50250, Israel
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Proteomic Profiling Reveals Distinct Bacterial Extracellular Vesicle Subpopulations with Possibly Unique Functionality. Appl Environ Microbiol 2023; 89:e0168622. [PMID: 36533919 PMCID: PMC9888257 DOI: 10.1128/aem.01686-22] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
Bacterial outer membrane vesicles (OMVs) are 20- to 200-nm secreted packages of lipids, small molecules, and proteins that contribute to diverse bacterial processes. In plant systems, OMVs from pathogenic and beneficial strains elicit plant immune responses that inhibit seedling growth and protect against future pathogen challenge. Previous studies of OMV-plant interactions suggest functionally important differences in the protein composition of Pseudomonas syringae and Pseudomonas fluorescens OMVs, and that their composition and activity differ as a result of medium culture conditions. Here, we show that plant apoplast-mimicking minimal medium conditions impact OMV protein content dramatically in P. syringae but not in P. fluorescens relative to complete medium conditions. Comparative, 2-way analysis of the four conditions reveals subsets of proteins that may contribute to OMV-mediated bacterial virulence and plant immune activation as well as those involved in bacterial stress tolerance or adaptation to a beneficial relationship with plants. Additional localization enrichment analysis of these subsets suggests the presence of outer-inner membrane vesicles (OIMVs). Collectively, these results reveal distinct differences in bacterial extracellular vesicle cargo and biogenesis routes from pathogenic and beneficial plant bacteria in different medium conditions and point to distinct populations of vesicles with diverse functional roles. IMPORTANCE Recent publications have shown that bacterial vesicles play important roles in interkingdom communication between bacteria and plants. Indeed, our recently published data reveal that bacterial vesicles from pathogenic and beneficial strains elicit immune responses in plants that protect against future pathogen challenge. However, the molecules underlying these striking phenomena remain unknown. Our recent work indicated that proteins packaged in vesicles are critically important for vesicle-mediated seedling growth inhibition, often considered an indirect measure of plant immune activation. In this study, we characterize the protein cargo of vesicles from Pseudomonas syringae pathovar tomato DC3000 and Pseudomonas fluorescens from two different medium conditions and show that distinct subpopulations of vesicles contribute to bacterial virulence and stress tolerance. Furthermore, we reveal differences in how beneficial and pathogenic bacterial species respond to harsh environmental conditions through vesicle packaging. Importantly, we find that protein cargo implicates outer-inner membrane vesicles in bacterial stress responses, while outer membrane vesicles are packaged for virulence.
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Kaur G, Yadav IS, Bhatia D, Vikal Y, Neelam K, Dhillon NK, Praba UP, Mangat GS, Singh K. BSA-seq Identifies a Major Locus on Chromosome 6 for Root-Knot Nematode (Meloidogyne graminicola) Resistance From Oryza glaberrima. Front Genet 2022; 13:871833. [PMID: 35774507 PMCID: PMC9237506 DOI: 10.3389/fgene.2022.871833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 05/02/2022] [Indexed: 11/13/2022] Open
Abstract
Root-knot nematode (Meloidogyne graminicola) is one of the emerging threats to rice production worldwide that causes substantial yield reductions. There is a progressive shift of the cropping system from traditional transplanting to direct-seeded water-saving rice production that favored the development of M. graminicola. Scouting and deploying new resistance genes is an economical approach to managing the root-knot nematodes. Here, we report that the inheritance of root-knot nematode resistance in Oryza glaberrima acc. IRGC102206 is governed by a single dominant gene. Traditional mapping coupled with BSA-seq is used to map nematode resistance gene(s) using the BC1F1 population derived from a cross of O. sativa cv. PR121 (S) and O. glaberrima acc. IRGC102206 (R). One major novel genomic region spanning a 3.0-Mb interval on chromosome 6 and two minor QTLs on chromosomes 2 and 4 are the potential genomic regions associated with rice root-knot nematode resistance. Within the QTL regions, 19 putative candidate genes contain 81 non-synonymous variants. The detected major candidate region could be fine mapped to accelerate marker-assisted breeding for root-knot nematode resistance in rice.
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Affiliation(s)
- Gurwinder Kaur
- School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India
| | - Inderjit Singh Yadav
- School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India
| | - Dharminder Bhatia
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Yogesh Vikal
- School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India
- *Correspondence: Yogesh Vikal,
| | - Kumari Neelam
- School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India
| | | | - Umesh Preethi Praba
- School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India
| | - Gurjit Singh Mangat
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Kuldeep Singh
- School of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India
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Jagdale S, Rao U, Giri AP. Effectors of Root-Knot Nematodes: An Arsenal for Successful Parasitism. FRONTIERS IN PLANT SCIENCE 2021; 12:800030. [PMID: 35003188 PMCID: PMC8727514 DOI: 10.3389/fpls.2021.800030] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 11/23/2021] [Indexed: 05/13/2023]
Abstract
Root-knot nematodes (RKNs) are notorious plant-parasitic nematodes first recorded in 1855 in cucumber plants. They are microscopic, obligate endoparasites that cause severe losses in agriculture and horticulture. They evade plant immunity, hijack the plant cell cycle, and metabolism to modify healthy cells into giant cells (GCs) - RKN feeding sites. RKNs secrete various effector molecules which suppress the plant defence and tamper with plant cellular and molecular biology. These effectors originate mainly from sub-ventral and dorsal oesophageal glands. Recently, a few non-oesophageal gland secreted effectors have been discovered. Effectors are essential for the entry of RKNs in plants, subsequently formation and maintenance of the GCs during the parasitism. In the past two decades, advanced genomic and post-genomic techniques identified many effectors, out of which only a few are well characterized. In this review, we provide molecular and functional details of RKN effectors secreted during parasitism. We list the known effectors and pinpoint their molecular functions. Moreover, we attempt to provide a comprehensive insight into RKN effectors concerning their implications on overall plant and nematode biology. Since effectors are the primary and prime molecular weapons of RKNs to invade the plant, it is imperative to understand their intriguing and complex functions to design counter-strategies against RKN infection.
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Affiliation(s)
- Shounak Jagdale
- Plant Molecular Biology Unit, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
| | - Uma Rao
- Division of Nematology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Ashok P. Giri
- Plant Molecular Biology Unit, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India
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9
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Zhao J, Sun Q, Quentin M, Ling J, Abad P, Zhang X, Li Y, Yang Y, Favery B, Mao Z, Xie B. A Meloidogyne incognita C-type lectin effector targets plant catalases to promote parasitism. THE NEW PHYTOLOGIST 2021; 232:2124-2137. [PMID: 34449897 DOI: 10.1111/nph.17690] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Accepted: 08/20/2021] [Indexed: 05/27/2023]
Abstract
Root-knot nematodes, Meloidogyne spp., secrete effectors to modulate plant immune responses and establish a parasitic relationship with host plants. However, the functions and plant targets of C-type lectin (CTL)-like effectors of Meloidogyne incognita remain unknown. Here, we characterized a CTL-like effector of M. incognita, MiCTL1a, and identified its target and role in nematode parasitism. In situ hybridization demonstrated the expression of MiCTL1 in the subventral glands; and in planta, immunolocalization showed its secretion during M. incognita parasitism. Virus-induced gene silencing of the MiCTL1 reduced the infection ability of M. incognita in Nicotiana benthamiana. The ectopic expression in Arabidopsis not only increased susceptibility to M. incognita but also promoted root growth. Yeast two-hybrid and co-immunoprecipitation assays revealed that MiCTL1a interacts with Arabidopsis catalases, which play essential roles in hydrogen peroxide homeostasis. Knockout or overexpression of catalases showed either increased or reduced susceptibility to M. incognita, respectively. Moreover, MiCTL1a not only reduced catalase activity in vitro and in planta but also modulated stress-related gene expressions in Arabidopsis. Our data suggest that MiCTL1a interacts with plant catalases and interferes with catalase activity, allowing M. incognita to establish a parasitic relationship with its host by fine-tuning responses mediated by reactive oxygen species.
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Affiliation(s)
- Jianlong Zhao
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing, 100081, China
| | - Qinghua Sun
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing, 100081, China
| | - Michaël Quentin
- INRAE, CNRS, ISA, Université Côte d'Azur, Sophia Antipolis, F-06903, France
| | - Jian Ling
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing, 100081, China
| | - Pierre Abad
- INRAE, CNRS, ISA, Université Côte d'Azur, Sophia Antipolis, F-06903, France
| | - Xiaoping Zhang
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing, 100081, China
- Chifeng University, Chifeng, Inner Mongolia, 024099, China
| | - Yan Li
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing, 100081, China
| | - Yuhong Yang
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing, 100081, China
| | - Bruno Favery
- INRAE, CNRS, ISA, Université Côte d'Azur, Sophia Antipolis, F-06903, France
| | - Zhenchuan Mao
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing, 100081, China
| | - Bingyan Xie
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, Beijing, 100081, China
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Meloidogyne graminicola-A Threat to Rice Production: Review Update on Distribution, Biology, Identification, and Management. BIOLOGY 2021; 10:biology10111163. [PMID: 34827156 PMCID: PMC8614973 DOI: 10.3390/biology10111163] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 11/04/2021] [Accepted: 11/05/2021] [Indexed: 12/05/2022]
Abstract
Simple Summary New risks to plant health are constantly emerging. Such is the case of the rice root knot nematode Meloidogyne graminicola, adapted to flooded conditions and representing a risk to all types of rice agro-systems. It has been recently detected in Italy and added to the European and Mediterranean Plant Protection Organization (EPPO) Alert List. The presence of this nematode in Europe poses a threat to rice production, as there is a high probability to spread, due to trade activities and climate changes. In view of its importance, an extensive updated review was carried out. Abstract Rice (Oryza sativa L.) is one of the main cultivated crops worldwide and represents a staple food for more than half of the world population. Root-knot nematodes (RKNs), Meloidogyne spp., and particularly M. graminicola, are serious pests of rice, being, probably, the most economically important plant-parasitic nematode in this crop. M. graminicola is an obligate sedentary endoparasite adapted to flooded conditions. Until recently, M. graminicola was present mainly in irrigated rice fields in Asia, parts of the Americas, and South Africa. However, in July 2016, it was found in northern Italy in the Piedmont region and in May 2018 in the Lombardy region in the province of Pavia. Following the first detection in the EPPO region, this pest was included in the EPPO Alert List as its wide host range and ability to survive during long periods in environments with low oxygen content, represent a threat for rice production in the European Union. Considering the impact of this nematode on agriculture, a literature review focusing on M. graminicola distribution, biology, identification, and management was conducted.
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Song H, Lin B, Huang Q, Sun L, Chen J, Hu L, Zhuo K, Liao J. The Meloidogyne graminicola effector MgMO289 targets a novel copper metallochaperone to suppress immunity in rice. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:5638-5655. [PMID: 33974693 DOI: 10.1093/jxb/erab208] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Accepted: 05/07/2021] [Indexed: 05/14/2023]
Abstract
Recent studies have reported that plant-parasitic nematodes facilitate their infection by suppressing plant immunity via effectors, but the inhibitory mechanisms remain poorly understood. This study found that a novel effector MgMO289 is exclusively expressed in the dorsal esophageal gland of Meloidogyne graminicola and is up-regulated at parasitic third-/fourth-stage juveniles. In planta silencing of MgMO289 substantially increased plant resistance to M. graminicola. Moreover, we found that MgMO289 interacts with a new rice copper metallochaperone heavy metal-associated plant protein 04 (OsHPP04), and that rice cytosolic COPPER/ZINC -SUPEROXIDE DISMUTASE 2 (cCu/Zn-SOD2) is the target of OsHPP04. Rice plants overexpressing OsHPP04 or MgMO289 exhibited an increased susceptibility to M. graminicola and a higher Cu/Zn-SOD activity, but lower O2•- content, when compared with wild-type plants. Meanwhile, immune response assays showed that MgMO289 could suppress host innate immunity. These findings reveal a novel pathway for a plant pathogen effector that utilizes the host O2•--scavenging system to eliminate O2•- and suppress plant immunity.
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Affiliation(s)
- Handa Song
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
| | - Borong Lin
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory of Lingnan Modern Agriculture, Guangzhou, China
| | - Qiuling Huang
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
| | - Longhua Sun
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
| | - Jiansong Chen
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
| | - Lili Hu
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
| | - Kan Zhuo
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory of Lingnan Modern Agriculture, Guangzhou, China
| | - Jinling Liao
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
- Guangdong Eco-Engineering Polytechnic, Guangzhou, China
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Somvanshi VS, Dash M, Bhat CG, Budhwar R, Godwin J, Shukla RN, Patrignani A, Schlapbach R, Rao U. An improved draft genome assembly of Meloidogyne graminicola IARI strain using long-read sequencing. Gene 2021; 793:145748. [PMID: 34077775 DOI: 10.1016/j.gene.2021.145748] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Revised: 05/23/2021] [Accepted: 05/27/2021] [Indexed: 01/10/2023]
Abstract
The rice root-knot nematode Meloidogyne graminicola is a major biotic stress for the rice crop under upland, rain-fed lowland and irrigated cultivation conditions. Here, we present an improved draft genome assembly of M. graminicola IARI strain using the long-read sequencing approach (PacBio Sequel platform). The assembled genome size was 36.86 Mb with 514 contigs and N50 value of 105 kb. BUSCO estimated the genome to be 88.6% complete. Meloidogyne graminicola genome contained 17.83% repeat elements and showed 14,062 protein-coding gene models, 4,974 conserved orthologous genes, 561 putative secreted proteins, 49 RNAi pathway genes, 1,853 proteins involved in pathogen-host interactions, 1,575 carbohydrate-active enzymes, and 32,138 microsatellites. Five of the carbohydrate-active enzymes were found only in M. graminicola genome and were not present in any other analysed root-knot nematode genome. Together with the previous two genome assemblies, this improved genome assembly would facilitate comparative and functional genomics for M. graminicola.
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Affiliation(s)
- Vishal Singh Somvanshi
- Division of Nematology, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi 110012, India
| | - Manoranjan Dash
- Division of Nematology, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi 110012, India
| | - Chaitra G Bhat
- Division of Nematology, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi 110012, India
| | - Roli Budhwar
- Bionivid Technology Private Limited, 209, 4th Cross Rd, B Channasandra, Kasturi Nagar, Bengaluru, Karnataka 560043, India
| | - Jeffrey Godwin
- Bionivid Technology Private Limited, 209, 4th Cross Rd, B Channasandra, Kasturi Nagar, Bengaluru, Karnataka 560043, India
| | - Rohit N Shukla
- Bionivid Technology Private Limited, 209, 4th Cross Rd, B Channasandra, Kasturi Nagar, Bengaluru, Karnataka 560043, India
| | - Andrea Patrignani
- Functional Genomics Center Zurich, Winterthurerstr. 190, Y32H52, 8057 Zurich, Switzerland
| | - Ralph Schlapbach
- Functional Genomics Center Zurich, Winterthurerstr. 190, Y32H52, 8057 Zurich, Switzerland
| | - Uma Rao
- Division of Nematology, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi 110012, India.
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Chen J, Li Z, Lin B, Liao J, Zhuo K. A Meloidogyne graminicola Pectate Lyase Is Involved in Virulence and Activation of Host Defense Responses. FRONTIERS IN PLANT SCIENCE 2021; 12:651627. [PMID: 33868351 PMCID: PMC8044864 DOI: 10.3389/fpls.2021.651627] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Accepted: 02/22/2021] [Indexed: 05/27/2023]
Abstract
Plant-parasitic nematodes secrete an array of cell-wall-degrading enzymes to overcome the physical barrier formed by the plant cell wall. Here, we describe a novel pectate lyase gene Mg-PEL1 from M. graminicola. Quantitative real-time PCR assay showed that the highest transcriptional expression level of Mg-PEL1 occurred in pre-parasitic second-stage juveniles, and it was still detected during the early parasitic stage. Using in situ hybridization, we showed that Mg-PEL1 was expressed exclusively within the subventral esophageal gland cells of M. graminicola. The yeast signal sequence trap system revealed that it possessed an N-terminal signal peptide with secretion function. Recombinant Mg-PEL1 exhibited hydrolytic activity toward polygalacturonic acid. Rice plants expressing RNA interference vectors targeting Mg-PEL1 showed an increased resistance to M. graminicola. In addition, using an Agrobacterium-mediated transient expression system and plant immune response assays, we demonstrated that the cell wall localization of Mg-PEL1 was required for the activation of plant defense responses, including programmed plant cell death, reactive oxygen species (ROS) accumulation and expression of defense-related genes. Taken together, our results indicated that Mg-PEL1 could enhance the pathogenicity of M. graminicola and induce plant immune responses during nematode invasion into plants or migration in plants. This provides a new insight into the function of pectate lyases in plants-nematodes interaction.
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Affiliation(s)
- Jiansong Chen
- Guangdong Laboratory of Lingnan Modern Agriculture, Guangzhou, China
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
| | - Zhiwen Li
- Guangdong Laboratory of Lingnan Modern Agriculture, Guangzhou, China
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
| | - Borong Lin
- Guangdong Laboratory of Lingnan Modern Agriculture, Guangzhou, China
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
| | - Jinling Liao
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Eco-Engineering Polytechnic, Guangzhou, China
| | - Kan Zhuo
- Guangdong Laboratory of Lingnan Modern Agriculture, Guangzhou, China
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
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He Q, Wang D, Tang B, Wang J, Zhang D, Liu Y, Cheng F. Rapid and Sensitive Detection of Meloidogyne graminicola in Soil Using Conventional PCR, Loop-Mediated Isothermal Amplification, and Real-Time PCR Methods. PLANT DISEASE 2021; 105:456-463. [PMID: 32729804 DOI: 10.1094/pdis-06-20-1291-re] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Meloidogyne graminicola is one of the major plant-parasitic nematodes (PPNs) that affect rice agriculture. Rapid identification and quantification of M. graminicola in soil is crucial for early diagnosis so that measures can be taken to reduce the impact of PPN diseases and ensure food security. In this study, M. graminicola species-specific primers for conventional PCR, loop-mediated isothermal amplification (LAMP), and real-time PCR were designed based on the sequence-characterized amplified region. The primers were highly specific and sensitive, and only samples containing M. graminicola DNA showed positive results. The sensitivity of LAMP and real-time PCR (two second-stage juvenile [J2] M. graminicola in 100 g of soil) was higher than that of conventional PCR (200 J2s in 100 g of soil). A standard curve (correlation coefficient R2 = 0.970, P < 0.001) was generated by amplifying DNA extracted from 0.5 g of soil, and a significant correlation was observed between the number of M. graminicola determined by microscopic examination and that predicted from the standard curve (R2 = 0.477, P = 0.0160). In quantification analyses of M. graminicola isolated from 31 naturally infested soils, the sensitivity of LAMP and real-time PCR (22 M. graminicola in 100 g of soil) was higher than that of conventional PCR (211 M. graminicola in 100 g of soil). The conventional PCR, LAMP, and real-time PCR methods have the potential to provide a useful platform for rapid species identification according to the experimental conditions. The real-time PCR assay and standard curve can be used for quantification of M. graminicola. These newly developed assays will help to facilitate the control of these economically important PPNs.
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Affiliation(s)
- Qingcong He
- Key Laboratory of Integrated Management of the Pests and Diseases on Horticultural Crops in Hunan Province, Institute of Plant Protection, Hunan Academy of Agriculture Sciences, Changsha 410125, China
- Long Ping Branch, Graduate School of Hunan University, Changsha 410125, China
| | - Dongwei Wang
- Key Laboratory of Integrated Management of the Pests and Diseases on Horticultural Crops in Hunan Province, Institute of Plant Protection, Hunan Academy of Agriculture Sciences, Changsha 410125, China
| | - Bei Tang
- Key Laboratory of Integrated Management of the Pests and Diseases on Horticultural Crops in Hunan Province, Institute of Plant Protection, Hunan Academy of Agriculture Sciences, Changsha 410125, China
- Long Ping Branch, Graduate School of Hunan University, Changsha 410125, China
| | - Jian Wang
- Agricultural Economy and Regional Planning Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China
| | - Deyong Zhang
- Key Laboratory of Integrated Management of the Pests and Diseases on Horticultural Crops in Hunan Province, Institute of Plant Protection, Hunan Academy of Agriculture Sciences, Changsha 410125, China
- Long Ping Branch, Graduate School of Hunan University, Changsha 410125, China
| | - Yong Liu
- Key Laboratory of Integrated Management of the Pests and Diseases on Horticultural Crops in Hunan Province, Institute of Plant Protection, Hunan Academy of Agriculture Sciences, Changsha 410125, China
- Long Ping Branch, Graduate School of Hunan University, Changsha 410125, China
| | - Feixue Cheng
- Key Laboratory of Integrated Management of the Pests and Diseases on Horticultural Crops in Hunan Province, Institute of Plant Protection, Hunan Academy of Agriculture Sciences, Changsha 410125, China
- Long Ping Branch, Graduate School of Hunan University, Changsha 410125, China
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Tian Z, Wang Z, Munawar M, Zheng J. Identification and Characterization of a Novel Protein Disulfide Isomerase Gene ( MgPDI2) from Meloidogyne graminicola. Int J Mol Sci 2020; 21:E9586. [PMID: 33339262 PMCID: PMC7767112 DOI: 10.3390/ijms21249586] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Revised: 12/04/2020] [Accepted: 12/04/2020] [Indexed: 01/05/2023] Open
Abstract
Protein disulfide isomerase (PDI) is a multifunctional enzyme that catalyzes rate-limiting reactions such as disulfide bond formation, isomerization, and reduction. There is some evidence that indicates that PDI is also involved in host-pathogen interactions in plants. In this study, we show that the rice root-knot nematode, Meloidogyne graminicola, has evolved a secreted effector, MgPDI2, which is expressed in the subventral esophageal glands and up-regulated during the early parasitic stage of M. graminicola. Purified recombinant MgPDI2 functions as an insulin disulfide reductase and protects plasmid DNA from nicking. As an effector, MgPDI2 contributes to nematode parasitism. Silencing of MgPDI2 by RNA interference in the pre-parasitic second-stage juveniles (J2s) reduced M. graminicola multiplication and also increased M. graminicola mortality under H2O2 stress. In addition, an Agrobacterium-mediated transient expression assay found that MgPDI2 caused noticeable cell death in Nicotiana benthamiana. An intact C-terminal region containing the first catalytic domain (a) with an active motif (Cys-Gly-His-Cys, CGHC) and the two non-active domains (b and b') is required for cell death induction in N. benthamiana. This research may provide a promising target for the development of new strategies to combat M. graminicola infections.
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Affiliation(s)
- Zhongling Tian
- Laboratory of Plant Nematology, Institute of Biotechnology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China; (Z.T.); (M.M.)
| | - Zehua Wang
- Institute of Insect Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China;
| | - Maria Munawar
- Laboratory of Plant Nematology, Institute of Biotechnology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China; (Z.T.); (M.M.)
| | - Jingwu Zheng
- Laboratory of Plant Nematology, Institute of Biotechnology, College of Agriculture & Biotechnology, Zhejiang University, Hangzhou 310058, China; (Z.T.); (M.M.)
- Key Lab of Molecular Biology of Crop Pathogens and Insects, Ministry of Agriculture, Hangzhou 310058, China
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Petitot AS, Dereeper A, Da Silva C, Guy J, Fernandez D. Analyses of the Root-Knot Nematode ( Meloidogyne graminicola) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants. Pathogens 2020; 9:pathogens9080644. [PMID: 32784493 PMCID: PMC7460394 DOI: 10.3390/pathogens9080644] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 07/31/2020] [Accepted: 08/06/2020] [Indexed: 12/26/2022] Open
Abstract
The plant-parasitic nematode Meloidogyne graminicola causes considerable damages to rice (Oryza sativa) culture. Resistance to M. graminicola in the related species Oryza glaberrima reduces root penetration by juveniles and stops further nematode development. M. graminicola genes expressed during O. sativa infection were previously characterized but no information is available about the molecular dialogue established with a resistant plant. We compared the M. graminicola transcriptomes of stage-two juveniles (J2s) before and during infection of susceptible or resistant rice. Among 36,121 M. graminicola genes surveyed, 367 were differentially expressed during infection of resistant or susceptible plants. Genes encoding cell wall-degrading enzymes, peptidases and neuropeptides were expressed for a longer time in resistant plants compared to susceptible plants. Conversely, genes related to nematode development were not activated in the resistant host. The majority of M. graminicola effector genes had similar expression patterns, whatever the host genotype. However, two venom allergen-like protein (VAP)-encoding genes were specifically induced in resistant plants and Mg-VAP1 silencing in J2s reduced their ability to colonize roots. This study highlighted that M. graminicola adapts its gene expression to the host susceptibility. Further investigation is required to assess the role of Mg-VAPs in the rice-nematode interaction.
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Affiliation(s)
- Anne-Sophie Petitot
- IRD, Cirad, Univ Montpellier, IPME, 911 Avenue Agropolis, BP 64501, CEDEX 5, 34394 Montpellier, France; (A.D.); (D.F.)
- Correspondence:
| | - Alexis Dereeper
- IRD, Cirad, Univ Montpellier, IPME, 911 Avenue Agropolis, BP 64501, CEDEX 5, 34394 Montpellier, France; (A.D.); (D.F.)
| | - Corinne Da Silva
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France; (C.D.S.); (J.G.)
| | - Julie Guy
- Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057 Evry, France; (C.D.S.); (J.G.)
| | - Diana Fernandez
- IRD, Cirad, Univ Montpellier, IPME, 911 Avenue Agropolis, BP 64501, CEDEX 5, 34394 Montpellier, France; (A.D.); (D.F.)
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Somvanshi VS, Phani V, Banakar P, Chatterjee M, Budhwar R, Shukla RN, Rao U. Transcriptomic changes in the pre-parasitic juveniles of Meloidogyne incognita induced by silencing of effectors Mi-msp-1 and Mi-msp-20. 3 Biotech 2020; 10:360. [PMID: 32832322 DOI: 10.1007/s13205-020-02353-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Accepted: 07/22/2020] [Indexed: 01/18/2023] Open
Abstract
Plant-parasitic root-knot nematode Meloidogyne incognita uses an array of effector proteins to establish successful plant infections. Mi-msp-1 and Mi-msp-20 are two known effectors secreted from nematode subventral oesophageal glands; Mi-msp-1 being a putative secretory venom allergen AG5-like protein, whereas Mi-msp-20 is a pioneer gene with a coiled-coil motif. Expression of specific effector is known to cause disturbances in the expression of other effectors. Here, we used RNA-Seq to investigate the pleiotropic effects of silencing Mi-msp-1 and Mi-msp-20. A total of 25.1-51.9 million HQ reads generated from Mi-msp-1 and Mi-msp-20 silenced second-stage juveniles (J2s) along with freshly hatched J2s were mapped to an already annotated M. incognita proteome to understand the impact on various nematode pathways. As compared to control, silencing of Mi-msp-1 caused differential expression of 29 transcripts, while Mi-msp-20 silencing resulted in differential expression of a broader set of 409 transcripts. In the Mi-msp-1 silenced J2s, cytoplasm (GO:0005737) was the most enriched gene ontology (GO) term, whereas in the Mi-msp-20 silenced worms, embryo development (GO:0009792), reproduction (GO:0000003) and nematode larval development (GO:0002119) were the most enriched terms. Limited crosstalk was observed between these two effectors as a sheer 5.9% of the up-regulated transcripts were common between Mi-msp-1 and Mi-msp-20 silenced nematodes. Our results suggest that in addition to the direct knock-down caused by silencing of Mi-msp-1 and Mi-msp-20, the cascading effect on other genes might also be contributing to a reduction in nematode's parasitic abilities.
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Lefevere H, Bauters L, Gheysen G. Salicylic Acid Biosynthesis in Plants. FRONTIERS IN PLANT SCIENCE 2020; 11:338. [PMID: 32362901 PMCID: PMC7182001 DOI: 10.3389/fpls.2020.00338] [Citation(s) in RCA: 205] [Impact Index Per Article: 51.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Accepted: 03/06/2020] [Indexed: 05/19/2023]
Abstract
Salicylic acid (SA) is an important plant hormone that is best known for mediating host responses upon pathogen infection. Its role in plant defense activation is well established, but its biosynthesis in plants is not fully understood. SA is considered to be derived from two possible pathways; the ICS and PAL pathway, both starting from chorismate. The importance of both pathways for biosynthesis differs between plant species, rendering it hard to make generalizations about SA production that cover the entire plant kingdom. Yet, understanding SA biosynthesis is important to gain insight into how plant pathogen responses function and how pathogens can interfere with them. In this review, we have taken a closer look at how SA is synthesized and the importance of both biosynthesis pathways in different plant species.
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Affiliation(s)
| | | | - Godelieve Gheysen
- Department of Biotechnology, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
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RNA-Seq revealed that infection with white tip nematodes could downregulate rice photosynthetic genes. Funct Integr Genomics 2019; 20:367-381. [DOI: 10.1007/s10142-019-00717-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2019] [Revised: 07/21/2019] [Accepted: 09/20/2019] [Indexed: 10/25/2022]
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Tian ZL, Wang ZH, Maria M, Qu N, Zheng JW. Meloidogyne graminicola protein disulfide isomerase may be a nematode effector and is involved in protection against oxidative damage. Sci Rep 2019; 9:11949. [PMID: 31420562 PMCID: PMC6697734 DOI: 10.1038/s41598-019-48474-w] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Accepted: 08/06/2019] [Indexed: 11/08/2022] Open
Abstract
The rice root-knot nematode, Meloidogyne graminicola, is a serious pest in most rice-growing countries. Usually, nematodes employ antioxidants to counteract the harm of reactive oxygen species (ROS) and facilitate their infection. Here the gene encoding M. graminicola protein disulphide isomerase (MgPDI) was identified. The deduced protein is highly conserved in the putative active-site Cys-Gly-His-Cys. In situ hybridization showed that MgPDI was specifically localized within esophageal glands of pre-parasitic second stage juveniles (J2s). MgPDI was significantly up-regulated in the late parasitic J2s. Characterization of the recombinant protein showed that the purified MgPDI exhibited similar activities to other oxidases/isomerases such as the refolding of the scrambled RNase and insulin disulfide reductase and the protection of plasmid DNA and living cells from ROS damage. In addition, silencing of MgPDI by RNA interference in the pre-parasitic J2s lowered their multiplication factor. MgPDI expression was up-regulated in the presence of exogenous H2O2, whereas MgPDI silencing resulted in an increase in mortality under H2O2 stress. MgPDI is localized in the apoplast when transient expression in Nicotiana benthamiana leaves. The results indicated that MgPDI plays important roles in the reproduction and pathogenicity of M. graminicola and it also contributes to protecting nematodes from exogenous H2O2 stress.
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Affiliation(s)
- Zhong-Ling Tian
- Laboratory of Plant Nematology, Institute of Biotechnology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, Zhejiang, P.R. China
| | - Ze-Hua Wang
- Institute of Insect Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, Zhejiang, P.R. China
| | - Munawar Maria
- Laboratory of Plant Nematology, Institute of Biotechnology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, Zhejiang, P.R. China
| | - Nan Qu
- Laboratory of Plant Nematology, Institute of Biotechnology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, Zhejiang, P.R. China
| | - Jing-Wu Zheng
- Laboratory of Plant Nematology, Institute of Biotechnology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, Zhejiang, P.R. China.
- Key Lab of Molecular Biology of Crop Pathogens and Insects, Ministry of Agriculture, Hangzhou, 310058, P.R. China.
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Cereal Root Interactions with Soilborne Pathogens—From Trait to Gene and Back. AGRONOMY-BASEL 2019. [DOI: 10.3390/agronomy9040188] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Realizing the yield potential of crop plants in the presence of shifting pathogen populations, soil quality, rainfall, and other agro-environmental variables remains a challenge for growers and breeders worldwide. In this review, we discuss current approaches for combatting the soilborne phytopathogenic nematodes, Pratylenchus and Heterodera of wheat and barley, and Meloidogyne graminicola Golden and Birchfield, 1965 of rice. The necrotrophic fungal pathogens, Rhizoctonia solani Kühn 1858 AG-8 and Fusarium spp. of wheat and barley, also are discussed. These pathogens constitute major causes of yield loss in small-grain cereals of the Pacific Northwest, USA and throughout the world. Current topics include new sources of genetic resistance, molecular leads from whole genome sequencing and genome-wide patterns of hosts, nematode or fungal gene expression during root-pathogen interactions, host-induced gene silencing, and building a molecular toolbox of genes and regulatory sequences for deployment of resistance genes. In conclusion, improvement of wheat, barley, and rice will require multiple approaches.
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Hu LJ, Wu XQ, Li HY, Zhao Q, Wang YC, Ye JR. An Effector, BxSapB1, Induces Cell Death and Contributes to Virulence in the Pine Wood Nematode Bursaphelenchus xylophilus. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2019; 32:452-463. [PMID: 30351223 DOI: 10.1094/mpmi-10-18-0275-r] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The pine wood nematode (PWN) Bursaphelenchus xylophilus has caused serious damage to pine forests in China. Effectors secreted by phytonematodes play a role in host infection. We identified and characterized an effector, BxSapB1, based on the B. xylophilus transcriptome at the early stages of infection and the transient expression of proteins in Nicotiana benthamiana. BxSapB1 triggered cell death in N. benthamiana when secreted into the apoplast, and this effect was independent of N. benthamiana brassinosteroid-insensitive 1-associated kinase 1 (NbBAK1) and suppressor of BIR1-1 (NbSOBIR1). The signal peptide of BxSapB1 was proven to be functional in yeast using the yeast signal sequence trap system and BxSapB1 was strongly expressed in the subventral gland cells of B. xylophilus, as revealed by in-situ hybridization. In addition, based on local BLAST analysis, the BxSapB1 showed 100% identity to BUX.s00139.62, which was identified from the B. xylophilus secretome during Pinus thunbergii infection. BxSapB1 was upregulated in a highly virulent strain and downregulated in a weakly virulent strain of PWN at the early stages of infection. RNA interference assays showed that silencing BxSapB1 resulted in decreased expression of pathogenesis-related genes (PtPR-1b, PtPR-3, and PtPR-5) as well as delayed onset of symptoms in P. thunbergii infected by B. xylophilus. The combined data suggest that BxSapB1 can trigger cell death in N. benthamiana and that it contributes to the virulence in B. xylophilus during parasitic interaction.
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Affiliation(s)
- Long-Jiao Hu
- 1 Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, 210037, China
- 2 Jiangsu Key Laboratory for Prevention and Management of Invasive Species, Nanjing Forestry University; and
| | - Xiao-Qin Wu
- 1 Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, 210037, China
- 2 Jiangsu Key Laboratory for Prevention and Management of Invasive Species, Nanjing Forestry University; and
| | - Hai-Yang Li
- 3 Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Qun Zhao
- 1 Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, 210037, China
- 2 Jiangsu Key Laboratory for Prevention and Management of Invasive Species, Nanjing Forestry University; and
| | - Yuan-Chao Wang
- 3 Department of Plant Pathology, Nanjing Agricultural University, Nanjing 210095, China
| | - Jian-Ren Ye
- 1 Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, 210037, China
- 2 Jiangsu Key Laboratory for Prevention and Management of Invasive Species, Nanjing Forestry University; and
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23
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Zhuo K, Naalden D, Nowak S, Xuan Huy N, Bauters L, Gheysen G. A Meloidogyne graminicola C-type lectin, Mg01965, is secreted into the host apoplast to suppress plant defence and promote parasitism. MOLECULAR PLANT PATHOLOGY 2019; 20:346-355. [PMID: 30315612 PMCID: PMC6637863 DOI: 10.1111/mpp.12759] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
C-type lectins (CTLs), a class of multifunctional proteins, are numerous in nematodes. One CTL gene, Mg01965, shown to be expressed in the subventral glands, especially in the second-stage juveniles of the root-knot nematode Meloidogyne graminicola, was further analysed in this study. In vitro RNA interference targeting Mg01965 in the preparasitic juveniles significantly reduced their ability to infect host plant roots. Immunolocalizations showed that Mg01965 is secreted by M. graminicola into the roots during the early parasitic stages and accumulates in the apoplast. Transient expression of Mg01965 in Nicotiana benthamiana and targeting it to the apoplast suppressed the burst of reactive oxygen species triggered by flg22. The CTL Mg01965 suppresses plant innate immunity in the host apoplast, promoting nematode parasitism in the early infection stages.
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Affiliation(s)
- Kan Zhuo
- Laboratory of Plant NematologySouth China Agricultural UniversityGuangzhou510642China
- Guangdong Province Key Laboratory of Microbial Signals and Disease ControlSouth China Agricultural UniversityGuangzhou510642China
- Department of Biotechnology, Faculty of Bioscience EngineeringGhent UniversityCoupure links 6539000GhentBelgium
| | - Diana Naalden
- Department of Biotechnology, Faculty of Bioscience EngineeringGhent UniversityCoupure links 6539000GhentBelgium
| | - Silke Nowak
- Department of Biotechnology, Faculty of Bioscience EngineeringGhent UniversityCoupure links 6539000GhentBelgium
| | - Nguyen Xuan Huy
- Department of Biotechnology, Faculty of Bioscience EngineeringGhent UniversityCoupure links 6539000GhentBelgium
- Biology Department, College of EducationHue University34 Le LoiHueVietnam
| | - Lander Bauters
- Department of Biotechnology, Faculty of Bioscience EngineeringGhent UniversityCoupure links 6539000GhentBelgium
| | - Godelieve Gheysen
- Department of Biotechnology, Faculty of Bioscience EngineeringGhent UniversityCoupure links 6539000GhentBelgium
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24
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Phani V, Shivakumara TN, Davies KG, Rao U. Knockdown of a mucin-like gene in Meloidogyne incognita (Nematoda) decreases attachment of endospores of Pasteuria penetrans to the infective juveniles and reduces nematode fecundity. MOLECULAR PLANT PATHOLOGY 2018; 19:2370-2383. [PMID: 30011135 PMCID: PMC6638177 DOI: 10.1111/mpp.12704] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2018] [Revised: 05/14/2018] [Accepted: 06/08/2018] [Indexed: 05/30/2023]
Abstract
Mucins are highly glycosylated polypeptides involved in many host-parasite interactions, but their function in plant-parasitic nematodes is still unknown. In this study, a mucin-like gene was cloned from Meloidogyne incognita (Mi-muc-1, 1125 bp) and characterized. The protein was found to be rich in serine and threonine with numerous O-glycosylation sites in the sequence. Quantitative real-time polymerase chain reaction (qRT-PCR) showed the highest expression in the adult female and in situ hybridization revealed the localization of Mi-muc-1 mRNA expression in the tail area in the region of the phasmid. Knockdown of Mi-muc-1 revealed a dual role: (1) immunologically, there was a significant decrease in attachment of Pasteuria penetrans endospores and a reduction in binding assays with human red blood cells (RBCs), suggesting that Mi-MUC-1 is a glycoprotein present on the surface coat of infective second-stage juveniles (J2s) and is involved in cellular adhesion to the cuticle of infective J2s; pretreatment of J2s with different carbohydrates indicated that the RBCs bind to J2 cuticle receptors different from those involved in the interaction of Pasteuria endospores with Mi-MUC-1; (2) the long-term effect of RNA interference (RNAi)-mediated knockdown of Mi-muc-1 led to a significant reduction in nematode fecundity, suggesting a possible function for this mucin as a mediator in the interaction between the nematode and the host plant.
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Affiliation(s)
- Victor Phani
- Division of NematologyICAR‐Indian Agricultural Research InstituteNew Delhi110012India
| | | | - Keith G Davies
- Department of Biological and Environmental SciencesUniversity of HertfordshireHatfieldAL10 9ABUnited Kingdom
- Norwegian Institute of Bioeconomy ResearchÅs115, 1431Norway
| | - Uma Rao
- Division of NematologyICAR‐Indian Agricultural Research InstituteNew Delhi110012India
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25
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Naalden D, Haegeman A, de Almeida‐Engler J, Birhane Eshetu F, Bauters L, Gheysen G. The Meloidogyne graminicola effector Mg16820 is secreted in the apoplast and cytoplasm to suppress plant host defense responses. MOLECULAR PLANT PATHOLOGY 2018; 19:2416-2430. [PMID: 30011122 PMCID: PMC6638014 DOI: 10.1111/mpp.12719] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2018] [Revised: 06/19/2018] [Accepted: 06/19/2018] [Indexed: 05/06/2023]
Abstract
On invasion of roots, plant-parasitic nematodes secrete effectors to manipulate the cellular regulation of the host to promote parasitism. The root-knot nematode Meloidogyne graminicola is one of the most damaging nematodes of rice. Here, we identified a novel effector of this nematode, named Mg16820, expressed in the nematode subventral glands. We localized the Mg16820 effector in the apoplast during the migration phase of the second-stage juvenile in rice roots. In addition, during early development of the feeding site, Mg16820 was localized in giant cells, where it accumulated in the cytoplasm and the nucleus. Using transient expression in Nicotiana benthamiana leaves, we demonstrated that Mg16820 directed to the apoplast was able to suppress flg22-induced reactive oxygen species production. In addition, expression of Mg16820 in the cytoplasm resulted in the suppression of the R2/Avr2- and Mi-1.2-induced hypersensitive response. A potential target protein of Mg16820 identified with the yeast two-hybrid system was the dehydration stress-inducible protein 1 (DIP1). Bimolecular fluorescence complementation resulted in a strong signal in the nucleus. DIP1 has been described as an abscisic acid (ABA)-responsive gene and ABA is involved in the biotic and abiotic stress response. Our results demonstrate that Mg16820 is able to act in two cellular compartments as an immune suppressor and targets a protein involved in the stress response, therefore indicating an important role for this effector in parasitism.
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Affiliation(s)
- Diana Naalden
- Department of Biotechnology, Faculty of Bioscience EngineeringGhent UniversityCoupure links 6539000GhentBelgium
| | - Annelies Haegeman
- Department of Biotechnology, Faculty of Bioscience EngineeringGhent UniversityCoupure links 6539000GhentBelgium
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Plant Sciences UnitCaritasstraat 399090MelleBelgium
| | | | - Firehiwot Birhane Eshetu
- Department of Biotechnology, Faculty of Bioscience EngineeringGhent UniversityCoupure links 6539000GhentBelgium
- Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI)University of PretoriaPretoria0002South Africa
| | - Lander Bauters
- Department of Biotechnology, Faculty of Bioscience EngineeringGhent UniversityCoupure links 6539000GhentBelgium
| | - Godelieve Gheysen
- Department of Biotechnology, Faculty of Bioscience EngineeringGhent UniversityCoupure links 6539000GhentBelgium
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26
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Shukla N, Yadav R, Kaur P, Rasmussen S, Goel S, Agarwal M, Jagannath A, Gupta R, Kumar A. Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses. MOLECULAR PLANT PATHOLOGY 2018; 19:615-633. [PMID: 28220591 PMCID: PMC6638136 DOI: 10.1111/mpp.12547] [Citation(s) in RCA: 80] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2016] [Revised: 01/19/2017] [Accepted: 02/17/2017] [Indexed: 05/10/2023]
Abstract
Root-knot nematodes (RKNs, Meloidogyne incognita) are economically important endoparasites with a wide host range. We used a comprehensive transcriptomic approach to investigate the expression of both tomato and RKN genes in tomato roots at five infection time intervals from susceptible plants and two infection time intervals from resistant plants, grown under soil conditions. Differentially expressed genes during susceptible (1827, tomato; 462, RKN) and resistance (25, tomato; 160, RKN) interactions were identified. In susceptible responses, tomato genes involved in cell wall structure, development, primary and secondary metabolite, and defence signalling pathways, together with RKN genes involved in host parasitism, development and defence, are discussed. In resistance responses, tomato genes involved in secondary metabolite and hormone-mediated defence responses, together with RKN genes involved in starvation stress-induced apoptosis, are discussed. In addition, 40 novel differentially expressed RKN genes encoding secretory proteins were identified. Our findings provide novel insights into the temporal regulation of genes involved in various biological processes from tomato and RKN simultaneously during susceptible and resistance responses, and reveal the involvement of a complex network of biosynthetic pathways during disease development.
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Affiliation(s)
- Neha Shukla
- Department of BotanyUniversity of DelhiDelhi110007India
| | - Rachita Yadav
- Department of Bio and Health InformaticsTechnical University of Denmark, Kemitorvet 208Lyngby2800Denmark
| | - Pritam Kaur
- Department of BotanyUniversity of DelhiDelhi110007India
| | - Simon Rasmussen
- Department of Bio and Health InformaticsTechnical University of Denmark, Kemitorvet 208Lyngby2800Denmark
| | | | - Manu Agarwal
- Department of BotanyUniversity of DelhiDelhi110007India
| | | | - Ramneek Gupta
- Department of Bio and Health InformaticsTechnical University of Denmark, Kemitorvet 208Lyngby2800Denmark
| | - Amar Kumar
- Department of BotanyUniversity of DelhiDelhi110007India
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27
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Chen J, Hu L, Sun L, Lin B, Huang K, Zhuo K, Liao J. A novel Meloidogyne graminicola effector, MgMO237, interacts with multiple host defence-related proteins to manipulate plant basal immunity and promote parasitism. MOLECULAR PLANT PATHOLOGY 2018; 19:1942-1955. [PMID: 29485753 PMCID: PMC6638000 DOI: 10.1111/mpp.12671] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Revised: 02/25/2018] [Accepted: 02/26/2018] [Indexed: 05/04/2023]
Abstract
Plant-parasitic nematodes can secrete effector proteins into the host tissue to facilitate their parasitism. In this study, we report a novel effector protein, MgMO237, from Meloidogyne graminicola, which is exclusively expressed within the dorsal oesophageal gland cell and markedly up-regulated in parasitic third-/fourth-stage juveniles of M. graminicola. Transient expression of MgMO237 in protoplasts from rice roots showed that MgMO237 was localized in the cytoplasm and nucleus of the host cells. Rice plants overexpressing MgMO237 showed an increased susceptibility to M. graminicola. In contrast, rice plants expressing RNA interference vectors targeting MgMO237 showed an increased resistance to M. graminicola. In addition, yeast two-hybrid and co-immunoprecipitation assays showed that MgMO237 interacted specifically with three rice endogenous proteins, i.e. 1,3-β-glucan synthase component (OsGSC), cysteine-rich repeat secretory protein 55 (OsCRRSP55) and pathogenesis-related BetvI family protein (OsBetvI), which are all related to host defences. Moreover, MgMO237 can suppress host defence responses, including the expression of host defence-related genes, cell wall callose deposition and the burst of reactive oxygen species. These results demonstrate that the effector MgMO237 probably promotes the parasitism of M. graminicola by interacting with multiple host defence-related proteins and suppressing plant basal immunity in the later parasitic stages of nematodes.
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Affiliation(s)
- Jiansong Chen
- Laboratory of Plant NematologySouth China Agricultural UniversityGuangzhou510642China
- Guangdong Province Key Laboratory of Microbial Signals and Disease ControlSouth China Agricultural UniversityGuangzhou510642China
| | - Lili Hu
- Laboratory of Plant NematologySouth China Agricultural UniversityGuangzhou510642China
- Guangdong Province Key Laboratory of Microbial Signals and Disease ControlSouth China Agricultural UniversityGuangzhou510642China
| | - Longhua Sun
- Laboratory of Plant NematologySouth China Agricultural UniversityGuangzhou510642China
- Guangdong Province Key Laboratory of Microbial Signals and Disease ControlSouth China Agricultural UniversityGuangzhou510642China
| | - Borong Lin
- Laboratory of Plant NematologySouth China Agricultural UniversityGuangzhou510642China
- Guangdong Province Key Laboratory of Microbial Signals and Disease ControlSouth China Agricultural UniversityGuangzhou510642China
| | - Kun Huang
- Laboratory of Plant NematologySouth China Agricultural UniversityGuangzhou510642China
| | - Kan Zhuo
- Laboratory of Plant NematologySouth China Agricultural UniversityGuangzhou510642China
- Guangdong Province Key Laboratory of Microbial Signals and Disease ControlSouth China Agricultural UniversityGuangzhou510642China
| | - Jinling Liao
- Laboratory of Plant NematologySouth China Agricultural UniversityGuangzhou510642China
- Guangdong Province Key Laboratory of Microbial Signals and Disease ControlSouth China Agricultural UniversityGuangzhou510642China
- Department of Eco‐engineering, Guangdong Eco‐Engineering PolytechnicGuangzhou510520China
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28
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Vieira P, Maier TR, Eves‐van den Akker S, Howe DK, Zasada I, Baum TJ, Eisenback JD, Kamo K. Identification of candidate effector genes of Pratylenchus penetrans. MOLECULAR PLANT PATHOLOGY 2018; 19:1887-1907. [PMID: 29424950 PMCID: PMC6638058 DOI: 10.1111/mpp.12666] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2017] [Revised: 02/06/2018] [Accepted: 02/07/2018] [Indexed: 05/02/2023]
Abstract
Pratylenchus penetrans is one of the most important species of root lesion nematodes (RLNs) because of its detrimental and economic impact in a wide range of crops. Similar to other plant-parasitic nematodes (PPNs), P. penetrans harbours a significant number of secreted proteins that play key roles during parasitism. Here, we combined spatially and temporally resolved next-generation sequencing datasets of P. penetrans to select a list of candidate genes aimed at the identification of a panel of effector genes for this species. We determined the spatial expression of transcripts of 22 candidate effectors within the oesophageal glands of P. penetrans by in situ hybridization. These comprised homologues of known effectors of other PPNs with diverse putative functions, as well as novel pioneer effectors specific to RLNs. It is noteworthy that five of the pioneer effectors encode extremely proline-rich proteins. We then combined in situ localization of effectors with available genomic data to identify a non-coding motif enriched in promoter regions of a subset of P. penetrans effectors, and thus a putative hallmark of spatial expression. Expression profiling analyses of a subset of candidate effectors confirmed their expression during plant infection. Our current results provide the most comprehensive panel of effectors found for RLNs. Considering the damage caused by P. penetrans, this information provides valuable data to elucidate the mode of parasitism of this nematode and offers useful suggestions regarding the potential use of P. penetrans-specific target effector genes to control this important pathogen.
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Affiliation(s)
- Paulo Vieira
- Department of Plant Pathology, Physiology, and Weed ScienceVirginia TechBlacksburgVA 24061USA
- Floral and Nursery Plants Research Unit, U.S. National Arboretum, U.S. Department of AgricultureBeltsvilleMD 20705‐2350USA
| | - Thomas R. Maier
- Department of Plant Pathology and MicrobiologyIowa State UniversityAmesIA 50011USA
| | - Sebastian Eves‐van den Akker
- Department of Biological ChemistryJohn Innes Centre, Norwich Research ParkNorwich NR4 7UHUK
- School of Life SciencesUniversity of DundeeDundee DD1 5EHUK
| | - Dana K. Howe
- Department of Integrative BiologyOregon State UniversityCorvallisOR 97331USA
| | - Inga Zasada
- Horticultural Crops Research LaboratoryU.S. Department of AgricultureCorvallisOR 97330USA
| | - Thomas J. Baum
- Department of Plant Pathology and MicrobiologyIowa State UniversityAmesIA 50011USA
| | - Jonathan D. Eisenback
- Department of Plant Pathology, Physiology, and Weed ScienceVirginia TechBlacksburgVA 24061USA
| | - Kathryn Kamo
- Floral and Nursery Plants Research Unit, U.S. National Arboretum, U.S. Department of AgricultureBeltsvilleMD 20705‐2350USA
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29
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Gardner M, Dhroso A, Johnson N, Davis EL, Baum TJ, Korkin D, Mitchum MG. Novel global effector mining from the transcriptome of early life stages of the soybean cyst nematode Heterodera glycines. Sci Rep 2018; 8:2505. [PMID: 29410430 PMCID: PMC5802810 DOI: 10.1038/s41598-018-20536-5] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2017] [Accepted: 01/12/2018] [Indexed: 11/08/2022] Open
Abstract
Soybean cyst nematode (SCN) Heterodera glycines is an obligate parasite that relies on the secretion of effector proteins to manipulate host cellular processes that favor the formation of a feeding site within host roots to ensure its survival. The sequence complexity and co-evolutionary forces acting upon these effectors remain unknown. Here we generated a de novo transcriptome assembly representing the early life stages of SCN in both a compatible and an incompatible host interaction to facilitate global effector mining efforts in the absence of an available annotated SCN genome. We then employed a dual effector prediction strategy coupling a newly developed nematode effector prediction tool, N-Preffector, with a traditional secreted protein prediction pipeline to uncover a suite of novel effector candidates. Our analysis distinguished between effectors that co-evolve with the host genotype and those conserved by the pathogen to maintain a core function in parasitism and demonstrated that alternative splicing is one mechanism used to diversify the effector pool. In addition, we confirmed the presence of viral and microbial inhabitants with molecular sequence information. This transcriptome represents the most comprehensive whole-nematode sequence currently available for SCN and can be used as a tool for annotation of expected genome assemblies.
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Affiliation(s)
- Michael Gardner
- Division of Plant Sciences and Bond Life Sciences Center, University of Missouri, Columbia, USA
| | - Andi Dhroso
- Department of Computer Science and Bioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, USA
| | - Nathan Johnson
- Department of Computer Science and Bioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, USA
| | - Eric L Davis
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, USA
| | - Thomas J Baum
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, USA
| | - Dmitry Korkin
- Department of Computer Science and Bioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, USA.
| | - Melissa G Mitchum
- Division of Plant Sciences and Bond Life Sciences Center, University of Missouri, Columbia, USA.
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30
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Cui JK, Peng H, Qiao F, Wang GF, Huang WK, Wu DQ, Peng D. Characterization of Putative Effectors from the Cereal Cyst Nematode Heterodera avenae. PHYTOPATHOLOGY 2018; 108:264-274. [PMID: 28945520 DOI: 10.1094/phyto-07-17-0226-r] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Few molecular details of effectors of Heterodera avenae parasitism are known. We performed a high-throughput sequencing analysis of the H. avenae transcriptome at five developmental stages. A total of 82,549 unigenes were ultimately obtained, and 747 transcripts showed best hits to genes putatively encoding carbohydrate-active enzymes in plant-parasitic nematodes that play an important role in the invasion process. A total of 1,480 unigenes were homologous to known phytonematode effectors, and 63 putative novel effectors were identified in the H. avenae transcriptomes. Twenty-three unigenes were analyzed by qRT-PCR and confirmed to be highly expressed during at least one developmental stage. For in situ hybridization, 17 of the 22 tested putative effectors were specifically expressed and located in the subventral gland cells, and five putative novel effectors were specifically expressed in the dorsal gland. Furthermore, 115 transcripts were found to have putative lethal RNA interference (RNAi) phenotypes. Three target genes with lethal RNAi phenotypes and two of the four tested putative effectors were associated with a decrease in the number of cysts through in vitro RNAi technology. These transcriptomic data lay a foundation for further studies of interactions of H. avenae with cereal and H. avenae parasitic control.
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Affiliation(s)
- Jiang-Kuan Cui
- First, second, third, fourth, fifth, sixth, and seventh authors: State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; first author: College of Plant Protection, Henan Agricultural University, Zhengzhou 450002, China; fourth author: College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; and sixth author: Center for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Huan Peng
- First, second, third, fourth, fifth, sixth, and seventh authors: State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; first author: College of Plant Protection, Henan Agricultural University, Zhengzhou 450002, China; fourth author: College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; and sixth author: Center for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Fen Qiao
- First, second, third, fourth, fifth, sixth, and seventh authors: State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; first author: College of Plant Protection, Henan Agricultural University, Zhengzhou 450002, China; fourth author: College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; and sixth author: Center for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Gao-Feng Wang
- First, second, third, fourth, fifth, sixth, and seventh authors: State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; first author: College of Plant Protection, Henan Agricultural University, Zhengzhou 450002, China; fourth author: College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; and sixth author: Center for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Wen-Kun Huang
- First, second, third, fourth, fifth, sixth, and seventh authors: State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; first author: College of Plant Protection, Henan Agricultural University, Zhengzhou 450002, China; fourth author: College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; and sixth author: Center for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Du-Qing Wu
- First, second, third, fourth, fifth, sixth, and seventh authors: State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; first author: College of Plant Protection, Henan Agricultural University, Zhengzhou 450002, China; fourth author: College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; and sixth author: Center for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK
| | - Deliang Peng
- First, second, third, fourth, fifth, sixth, and seventh authors: State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China; first author: College of Plant Protection, Henan Agricultural University, Zhengzhou 450002, China; fourth author: College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; and sixth author: Center for Plant Sciences, University of Leeds, Leeds, LS2 9JT, UK
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31
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Nguyen CN, Perfus-Barbeoch L, Quentin M, Zhao J, Magliano M, Marteu N, Da Rocha M, Nottet N, Abad P, Favery B. A root-knot nematode small glycine and cysteine-rich secreted effector, MiSGCR1, is involved in plant parasitism. THE NEW PHYTOLOGIST 2018; 217:687-699. [PMID: 29034957 DOI: 10.1111/nph.14837] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Accepted: 09/01/2017] [Indexed: 05/08/2023]
Abstract
Root-knot nematodes, Meloidogyne spp., are obligate endoparasites that maintain a biotrophic relationship with their hosts. They infect roots as microscopic vermiform second-stage juveniles, and establish specialized feeding structures called 'giant-cells', from which they withdraw water and nutrients. The nematode effector proteins secreted in planta are key elements in the molecular dialogue of parasitism. Here, we compared Illumina RNA-seq transcriptomes for M. incognita obtained at various points in the lifecycle, and identified 31 genes more strongly expressed in parasitic stages than in preparasitic juveniles. We then selected candidate effectors for functional characterization. Quantitative real-time PCR and in situ hybridizations showed that the validated differentially expressed genes are predominantly specifically expressed in oesophageal glands of the nematode. We also soaked the nematodes in siRNA to silence these genes and to determine their role in pathogenicity. The silencing of the dorsal gland specific-Minc18876 and its paralogues resulted in a significant, reproducible decrease in the number of mature females with egg masses, demonstrating a potentially important role for the small glycine- and cysteine-rich effector MiSGCR1 in early stages of plant-nematode interaction. Finally, we report that MiSGCR1 suppresses plant cell death induced by bacterial or oomycete triggers of plant defense.
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Affiliation(s)
- Chinh-Nghia Nguyen
- INRA, Université Côte d'Azur, CNRS, ISA, 400 route des Chappes, 06903, Cedex Sophia-Antipolis, France
| | - Laetitia Perfus-Barbeoch
- INRA, Université Côte d'Azur, CNRS, ISA, 400 route des Chappes, 06903, Cedex Sophia-Antipolis, France
| | - Michaël Quentin
- INRA, Université Côte d'Azur, CNRS, ISA, 400 route des Chappes, 06903, Cedex Sophia-Antipolis, France
| | - Jianlong Zhao
- Department of Plant Pathology and Key Laboratory of Plant Pathology of Ministry of Agriculture, China Agricultural University, Beijing, 100193, China
| | - Marc Magliano
- INRA, Université Côte d'Azur, CNRS, ISA, 400 route des Chappes, 06903, Cedex Sophia-Antipolis, France
| | - Nathalie Marteu
- INRA, Université Côte d'Azur, CNRS, ISA, 400 route des Chappes, 06903, Cedex Sophia-Antipolis, France
| | - Martine Da Rocha
- INRA, Université Côte d'Azur, CNRS, ISA, 400 route des Chappes, 06903, Cedex Sophia-Antipolis, France
| | - Nicolas Nottet
- INRA, Université Côte d'Azur, CNRS, ISA, 400 route des Chappes, 06903, Cedex Sophia-Antipolis, France
| | - Pierre Abad
- INRA, Université Côte d'Azur, CNRS, ISA, 400 route des Chappes, 06903, Cedex Sophia-Antipolis, France
| | - Bruno Favery
- INRA, Université Côte d'Azur, CNRS, ISA, 400 route des Chappes, 06903, Cedex Sophia-Antipolis, France
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Chen C, Cui L, Chen Y, Zhang H, Liu P, Wu P, Qiu D, Zou J, Yang D, Yang L, Liu H, Zhou Y, Li H. Transcriptional responses of wheat and the cereal cyst nematode Heterodera avenae during their early contact stage. Sci Rep 2017; 7:14471. [PMID: 29101332 PMCID: PMC5670130 DOI: 10.1038/s41598-017-14047-y] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2017] [Accepted: 10/04/2017] [Indexed: 01/22/2023] Open
Abstract
Cereal cyst nematode (Heterodera avenae) is attracted to and aggregated around wheat roots to initiate infection, but this interaction between wheat and the nematode is not fully understood. The transcriptional responses of both wheat and H. avenae were examined during their early contact stage by mRNA sequencing analysis; certain numbers of the differentially expressed genes (DEGs) were validated using quantitative real-time PCR. The immobile host wheat root only had 93 DEGs (27 up-regulated and 66 down-regulated), while the mobile plant parasitic nematode reacted much more actively with 879 DEGs (867 up-regulated and 12 down-regulated). Among them, a number of wheat DEGs (mostly down-regulated) were involved in biotic stress pathways, while several putative effector genes were up-regulated in the nematode DEGs. One putative chitinase-like effector gene of H. avenae was able to suppress BAX-triggered programmed cell death in Nicotiana benthamiana. Results of these experiments demonstrated that nematode responded more actively than wheat during the contact stage of parasitism. The parasite's responses mainly involved up-regulation of genes including at least one anti-plant-defence effector gene, whereas the host responses mainly involved down-regulation of certain defence-related genes.
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Affiliation(s)
- Changlong Chen
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Lei Cui
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Yongpan Chen
- Department of Plant Pathology, China Agricultural University, Beijing, 100193, China
| | - Hongjun Zhang
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Pei Liu
- Department of Plant Pathology, China Agricultural University, Beijing, 100193, China
| | - Peipei Wu
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Dan Qiu
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Jingwei Zou
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Dan Yang
- Department of Plant Pathology, China Agricultural University, Beijing, 100193, China
| | - Li Yang
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Hongwei Liu
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Yang Zhou
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Hongjie Li
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
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Gervais J, Plissonneau C, Linglin J, Meyer M, Labadie K, Cruaud C, Fudal I, Rouxel T, Balesdent M. Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape. MOLECULAR PLANT PATHOLOGY 2017; 18:1113-1126. [PMID: 27474899 PMCID: PMC6638281 DOI: 10.1111/mpp.12464] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Leptosphaeria maculans, the causal agent of stem canker disease, colonizes oilseed rape (Brassica napus) in two stages: a short and early colonization stage corresponding to cotyledon or leaf colonization, and a late colonization stage during which the fungus colonizes systemically and symptomlessly the plant during several months before stem canker appears. To date, the determinants of the late colonization stage are poorly understood; L. maculans may either successfully escape plant defences, leading to stem canker development, or the plant may develop an 'adult-stage' resistance reducing canker incidence. To obtain an insight into these determinants, we performed an RNA-sequencing (RNA-seq) pilot project comparing fungal gene expression in infected cotyledons and in symptomless or necrotic stems. Despite the low fraction of fungal material in infected stems, sufficient fungal transcripts were detected and a large number of fungal genes were expressed, thus validating the feasibility of the approach. Our analysis showed that all avirulence genes previously identified are under-expressed during stem colonization compared with cotyledon colonization. A validation RNA-seq experiment was then performed to investigate the expression of candidate effector genes during systemic colonization. Three hundred and seven 'late' effector candidates, under-expressed in the early colonization stage and over-expressed in the infected stems, were identified. Finally, our analysis revealed a link between the regulation of expression of effectors and their genomic location: the 'late' effector candidates, putatively involved in systemic colonization, are located in gene-rich genomic regions, whereas the 'early' effector genes, over-expressed in the early colonization stage, are located in gene-poor regions of the genome.
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Affiliation(s)
- Julie Gervais
- UMR BIOGER, INRA, AgroParisTech, Université Paris‐Saclay, Avenue Lucien Brétignières, BP 01Thiverval‐GrignonF‐78850France
| | - Clémence Plissonneau
- UMR BIOGER, INRA, AgroParisTech, Université Paris‐Saclay, Avenue Lucien Brétignières, BP 01Thiverval‐GrignonF‐78850France
| | - Juliette Linglin
- UMR BIOGER, INRA, AgroParisTech, Université Paris‐Saclay, Avenue Lucien Brétignières, BP 01Thiverval‐GrignonF‐78850France
| | - Michel Meyer
- UMR BIOGER, INRA, AgroParisTech, Université Paris‐Saclay, Avenue Lucien Brétignières, BP 01Thiverval‐GrignonF‐78850France
| | - Karine Labadie
- CEA‐Institut de Génomique, GENOSCOPECentre National de SéquençageEvry CedexFrance
| | - Corinne Cruaud
- CEA‐Institut de Génomique, GENOSCOPECentre National de SéquençageEvry CedexFrance
| | - Isabelle Fudal
- UMR BIOGER, INRA, AgroParisTech, Université Paris‐Saclay, Avenue Lucien Brétignières, BP 01Thiverval‐GrignonF‐78850France
| | - Thierry Rouxel
- UMR BIOGER, INRA, AgroParisTech, Université Paris‐Saclay, Avenue Lucien Brétignières, BP 01Thiverval‐GrignonF‐78850France
| | - Marie‐Hélène Balesdent
- UMR BIOGER, INRA, AgroParisTech, Université Paris‐Saclay, Avenue Lucien Brétignières, BP 01Thiverval‐GrignonF‐78850France
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Kikuchi T, Eves-van den Akker S, Jones JT. Genome Evolution of Plant-Parasitic Nematodes. ANNUAL REVIEW OF PHYTOPATHOLOGY 2017; 55:333-354. [PMID: 28590877 DOI: 10.1146/annurev-phyto-080516-035434] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Plant parasitism has evolved independently on at least four separate occasions in the phylum Nematoda. The application of next-generation sequencing (NGS) to plant-parasitic nematodes has allowed a wide range of genome- or transcriptome-level comparisons, and these have identified genome adaptations that enable parasitism of plants. Current genome data suggest that horizontal gene transfer, gene family expansions, evolution of new genes that mediate interactions with the host, and parasitism-specific gene regulation are important adaptations that allow nematodes to parasitize plants. Sequencing of a larger number of nematode genomes, including plant parasites that show different modes of parasitism or that have evolved in currently unsampled clades, and using free-living taxa as comparators would allow more detailed analysis and a better understanding of the organization of key genes within the genomes. This would facilitate a more complete understanding of the way in which parasitism has shaped the genomes of plant-parasitic nematodes.
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Affiliation(s)
- Taisei Kikuchi
- Division of Parasitology, Faculty of Medicine, University of Miyazaki, Miyazaki 889-1692, Japan;
| | - Sebastian Eves-van den Akker
- Division of Plant Sciences, College of Life Sciences, University of Dundee, Dundee, DD1 5EH, United Kingdom
- Department of Biological Chemistry, The John Innes Centre, Norwich, NR4 7UH, United Kingdom
| | - John T Jones
- Cell and Molecular Sciences Group, Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, DD2 5DA, United Kingdom
- School of Biology, University of St. Andrews, North Haugh, St. Andrews, KY16 9TZ, United Kingdom
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Heterodera schachtii Tyrosinase-like protein - a novel nematode effector modulating plant hormone homeostasis. Sci Rep 2017; 7:6874. [PMID: 28761178 PMCID: PMC5537230 DOI: 10.1038/s41598-017-07269-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2017] [Accepted: 06/23/2017] [Indexed: 11/25/2022] Open
Abstract
The beet cyst nematode Heterodera schachtii causes major yield losses in sugar beet. Understanding the interaction between H. schachtii and its host plant is important for developing a sustainable management system. Nematode effectors play a crucial role in initializing and sustaining successful parasitism. In our study, we identified a gene (Hs-Tyr) encoding a tyrosinase functional domain (PF00264). We describe Hs-Tyr as a novel nematode effector. Hs-Tyr is localized in the nematode esophageal gland. Up-regulation of its expression coincided with the parasitic developmental stages of the nematode. Silencing Hs-Tyr by RNA interference made the treated nematodes less virulent. When RNAi-treated nematodes succeeded in infecting the plant, developing females and their associated syncytial nurse cells were significantly smaller than in control plants. Ectopically expressing the Hs-Tyr effector in Arabidopsis increased plant susceptibility to H. schachtii, but not to the root-knot nematode Meloidogyne incognita. Interestingly, Hs-Tyr in the plant promoted plant growth and changed the root architecture. Additionally, the expression of Hs-Tyr in Arabidopsis caused changes in the homeostasis of several plant hormones especially auxin and the ethylene precursor aminocyclopropane-carboxylic acid.
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Abstract
Plant-parasitic nematodes cause considerable damage to global agriculture. The ability to
parasitize plants is a derived character that appears to have independently emerged
several times in the phylum Nematoda. Morphological convergence to feeding style has been
observed, but whether this is emergent from molecular convergence is less obvious. To
address this, we assess whether genomic signatures can be associated with plant parasitism
by nematodes. In this review, we report genomic features and characteristics that appear
to be common in plant-parasitic nematodes while absent or rare in animal parasites,
predators or free-living species. Candidate horizontal acquisitions of parasitism genes
have systematically been found in all plant-parasitic species investigated at the sequence
level. Presence of peptides that mimic plant hormones also appears to be a trait of
plant-parasitic species. Annotations of the few genomes of plant-parasitic nematodes
available to date have revealed a set of apparently species-specific genes on every
occasion. Effector genes, important for parasitism are frequently found among those
species-specific genes, indicating poor overlap. Overall, nematodes appear to have
developed convergent genomic solutions to adapt to plant parasitism.
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Chen J, Lin B, Huang Q, Hu L, Zhuo K, Liao J. A novel Meloidogyne graminicola effector, MgGPP, is secreted into host cells and undergoes glycosylation in concert with proteolysis to suppress plant defenses and promote parasitism. PLoS Pathog 2017; 13:e1006301. [PMID: 28403192 PMCID: PMC5402989 DOI: 10.1371/journal.ppat.1006301] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2016] [Revised: 04/24/2017] [Accepted: 03/18/2017] [Indexed: 01/08/2023] Open
Abstract
Plant pathogen effectors can recruit the host post-translational machinery to mediate their post-translational modification (PTM) and regulate their activity to facilitate parasitism, but few studies have focused on this phenomenon in the field of plant-parasitic nematodes. In this study, we show that the plant-parasitic nematode Meloidogyne graminicola has evolved a novel effector, MgGPP, that is exclusively expressed within the nematode subventral esophageal gland cells and up-regulated in the early parasitic stage of M. graminicola. The effector MgGPP plays a role in nematode parasitism. Transgenic rice lines expressing MgGPP become significantly more susceptible to M. graminicola infection than wild-type control plants, and conversely, in planta, the silencing of MgGPP through RNAi technology substantially increases the resistance of rice to M. graminicola. Significantly, we show that MgGPP is secreted into host plants and targeted to the ER, where the N-glycosylation and C-terminal proteolysis of MgGPP occur. C-terminal proteolysis promotes MgGPP to leave the ER, after which it is transported to the nucleus. In addition, N-glycosylation of MgGPP is required for suppressing the host response. The research data provide an intriguing example of in planta glycosylation in concert with proteolysis of a pathogen effector, which depict a novel mechanism by which parasitic nematodes could subjugate plant immunity and promote parasitism and may present a promising target for developing new strategies against nematode infections.
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Affiliation(s)
- Jiansong Chen
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
| | - Borong Lin
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
| | - Qiuling Huang
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
| | - Lili Hu
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
| | - Kan Zhuo
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
- * E-mail: (JLL); (KZ)
| | - Jinling Liao
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou, China
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
- Guangdong Eco-Engineering Polytechnic, Guangzhou, China
- * E-mail: (JLL); (KZ)
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Peng H, Long H, Huang W, Liu J, Cui J, Kong L, Hu X, Gu J, Peng D. Rapid, simple and direct detection of Meloidogyne hapla from infected root galls using loop-mediated isothermal amplification combined with FTA technology. Sci Rep 2017; 7:44853. [PMID: 28368036 PMCID: PMC5377304 DOI: 10.1038/srep44853] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2016] [Accepted: 02/14/2017] [Indexed: 11/26/2022] Open
Abstract
The northern root-knot nematode (Meloidogyne hapla) is a damaging nematode that has caused serious economic losses worldwide. In the present study, a sensitive, simple and rapid method was developed for detection of M. hapla in infested plant roots by combining a Flinders Technology Associates (FTA) card with loop-mediated isothermal amplification (LAMP). The specific primers of LAMP were designed based on the distinction of internal transcribed spacer (ITS) sequences between M. hapla and other Meloidogyne spp. The LAMP assay can detect nematode genomic DNA at concentrations low to 1/200 000, which is 100 times more sensitive than conventional PCR. The LAMP was able to highly specifically distinguish M. hapla from other closely related nematode species. Furthermore, the advantages of the FTA-LAMP assay to detect M. hapla were demonstrated by assaying infected root galls that were artificially inoculated. In addition, M. hapla was successfully detected from six of forty-two field samples using FTA-LAMP technology. This study was the first to provide a simple diagnostic assay for M. hapla using the LAMP assay combined with FTA technology. In conclusion, the new FTA-LAMP assay has the potential for diagnosing infestation in the field and managing the pathogen M. hapla.
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Affiliation(s)
- Huan Peng
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Haibo Long
- Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China
| | - Wenkun Huang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Jing Liu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Jiangkuan Cui
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Lingan Kong
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Xianqi Hu
- The National Engineering Research Center of Agribiodiversity Applied Technologies, Yunnan Agricultural University, Kunming 650201, China
| | - Jianfeng Gu
- Academy of Inspection and Quarantine, Ningbo, Zhejiang, 315012, China
| | - Deliang Peng
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
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Kumari C, Dutta TK, Chaudhary S, Banakar P, Papolu PK, Rao U. Molecular characterization of FMRFamide-like peptides in Meloidogyne graminicola and analysis of their knockdown effect on nematode infectivity. Gene 2017; 619:50-60. [PMID: 28366833 DOI: 10.1016/j.gene.2017.03.042] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2016] [Revised: 03/22/2017] [Accepted: 03/29/2017] [Indexed: 11/18/2022]
Abstract
The rice root-knot nematode, Meloidogyne graminicola, seriously impairs the growth and yield of rice which is an important staple food worldwide. The disruption of neuropeptide signalling leading to attenuation in nematode behaviour and thereby perturbed infection, offers an attractive alternative to control nematodes. In this direction, the present study was aimed at mining of putative FMRFamide-like peptides (FLPs) from the transcriptomic dataset of M. graminicola followed by characterization of those FLPs via sequencing of PCR products, qRT-PCR and Southern hybridization analysis. We have characterized nine flp genes (flp-1, flp-3, flp-6, flp-7, flp-11, flp-12, flp-14, flp-16 and flp-18) and a partial neuropeptide receptor gene (flp-18 GPCR) from M. graminicola in the present study. In addition, in situ localization revealed the expression of flp-1 and flp-7 in neurons posterior to the circumpharyngeal nerve ring of M. graminicola. In vitro silencing of nine flp genes and flp-18 GPCR in M. graminicola J2 and their subsequent infection in rice and wheat roots demonstrated the reduced penetration ability of FLP silenced worms which underscores the potential of the FLPergic system as a broad-spectrum target to manage the root-knot nematode problem in rice-wheat cropping system.
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Affiliation(s)
- Chanchal Kumari
- Division of Nematology, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India
| | - Tushar K Dutta
- Division of Nematology, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India
| | - Sonam Chaudhary
- Division of Nematology, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India
| | - Prakash Banakar
- Division of Nematology, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India
| | - Pradeep K Papolu
- Division of Nematology, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India
| | - Uma Rao
- Division of Nematology, ICAR-Indian Agricultural Research Institute, New Delhi 110012, India.
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Petitot AS, Kyndt T, Haidar R, Dereeper A, Collin M, de Almeida Engler J, Gheysen G, Fernandez D. Transcriptomic and histological responses of African rice (Oryza glaberrima) to Meloidogyne graminicola provide new insights into root-knot nematode resistance in monocots. ANNALS OF BOTANY 2017; 119:885-899. [PMID: 28334204 PMCID: PMC5604615 DOI: 10.1093/aob/mcw256] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2016] [Accepted: 11/24/2016] [Indexed: 05/06/2023]
Abstract
BACKGROUND AND AIMS The root-knot nematode Meloidogyne graminicola is responsible for production losses in rice ( Oryza sativa ) in Asia and Latin America. The accession TOG5681 of African rice, O. glaberrima , presents improved resistance to several biotic and abiotic factors, including nematodes. The aim of this study was to assess the cytological and molecular mechanisms underlying nematode resistance in this accession. METHODS Penetration and development in M. graminicola in TOG5681 and the susceptible O. sativa genotype 'Nipponbare' were compared by microscopic observation of infected roots and histological analysis of galls. In parallel, host molecular responses to M. graminicola were assessed by root transcriptome profiling at 2, 4 and 8 d post-infection (dpi). Specific treatments with hormone inhibitors were conducted in TOG5681 to assess the impact of the jasmonic acid and salicylic acid pathways on nematode penetration and reproduction. KEY RESULTS Penetration and development of M. graminicola juveniles were reduced in the resistant TOG5681 in comparison with the susceptible accession, with degeneration of giant cells observed in the resistant genotype from 15 dpi onwards. Transcriptome changes were observed as early as 2 dpi, with genes predicted to be involved in defence responses, phenylpropanoid and hormone pathways strongly induced in TOG5681, in contrast to 'Nipponbare'. No specific hormonal pathway could be identified as the major determinant of resistance in the rice-nematode incompatible interaction. Candidate genes proposed as involved in resistance to M. graminicola in TOG5681 were identified based on their expression pattern and quantitative trait locus (QTL) position, including chalcone synthase, isoflavone reductase, phenylalanine ammonia lyase, WRKY62 transcription factor, thionin, stripe rust resistance protein, thaumatins and ATPase3. CONCLUSIONS This study provides a novel set of candidate genes for O. glaberrima resistance to nematodes and highlights the rice- M. graminicola pathosystem as a model to study plant-nematode incompatible interactions.
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Affiliation(s)
- Anne-Sophie Petitot
- Institut de Recherche pour le Développement, UMR 186 IPME (IRD-UM2-Cirad) 911, avenue Agropolis, BP 64501 34394 Montpellier Cedex 5, France
| | - Tina Kyndt
- Department of Molecular Biotechnology, Ghent University, Coupure links 653, 9000 Gent, Belgium
| | - Rana Haidar
- Institut de Recherche pour le Développement, UMR 186 IPME (IRD-UM2-Cirad) 911, avenue Agropolis, BP 64501 34394 Montpellier Cedex 5, France
| | - Alexis Dereeper
- Institut de Recherche pour le Développement, UMR 186 IPME (IRD-UM2-Cirad) 911, avenue Agropolis, BP 64501 34394 Montpellier Cedex 5, France
| | - Myriam Collin
- UMR 232 DIADE (IRD-UM2-Cirad) 911, avenue Agropolis BP 64501, 34394 Montpellier Cedex 5, France
| | - Janice de Almeida Engler
- Institut National de la Recherche Agronomique, UMR IBSV INRA/CNRS/UNS, 400, Route de Chappes BP167, 06903 Sophia Antipolis Cedex, France
| | - Godelieve Gheysen
- Department of Molecular Biotechnology, Ghent University, Coupure links 653, 9000 Gent, Belgium
| | - Diana Fernandez
- Institut de Recherche pour le Développement, UMR 186 IPME (IRD-UM2-Cirad) 911, avenue Agropolis, BP 64501 34394 Montpellier Cedex 5, France
- For correspondence. E-mail
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Xing X, Li X, Zhang M, Wang Y, Liu B, Xi Q, Zhao K, Wu Y, Yang T. Transcriptome analysis of resistant and susceptible tobacco (Nicotiana tabacum) in response to root-knot nematode Meloidogyne incognita infection. Biochem Biophys Res Commun 2017; 482:1114-1121. [PMID: 27914810 DOI: 10.1016/j.bbrc.2016.11.167] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2016] [Accepted: 11/29/2016] [Indexed: 11/29/2022]
Abstract
The root-knot nematode (RKN) Meloidogyne incognita reproduces on the roots of tobacco (Nicotiana tabacum), damaging crops, reducing crop yield, and causing economic losses annually. The development of resistant genotypes is an alternative strategy to effectively control these losses. However, the molecular mechanism responsible for host pathogenesis and defense responses in tobacco specifically against RKNs remain poorly understood. Here, root transcriptome analysis of resistant (Yuyan12) and susceptible (Changbohuang) tobacco varieties infected with RKNs was performed. Moreover, 2623 and 545 differentially expressed genes (DEGs) in RKN-infected roots were observed in Yuyan12 and Changbohuang, respectively, compared to those in non-infected roots, including 289 DEGs commonly expressed in the two genotypes. Among these DEGs, genes encoding cell wall modifying proteins, auxin-related proteins, the ROS scavenging system, and transcription factors involved in various biological and physiochemical processes were significantly expressed in both the resistant and susceptible genotypes. This work is thus the first report on the relationships in the RKN-tobacco interaction using transcriptome analysis, and the results provide important information on the mechanism of RKN resistance in tobacco.
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Affiliation(s)
- Xuexia Xing
- College of Tobacco, Henan Agricultural University, Zhengzhou 450002, Henan, China
| | - Xiaohui Li
- College of Tobacco, Henan Agricultural University, Zhengzhou 450002, Henan, China
| | - Mingzhen Zhang
- College of Tobacco, Henan Agricultural University, Zhengzhou 450002, Henan, China
| | - Yuan Wang
- College of Tobacco, Henan Agricultural University, Zhengzhou 450002, Henan, China
| | - Bingyang Liu
- College of Tobacco, Henan Agricultural University, Zhengzhou 450002, Henan, China
| | - Qiliang Xi
- College of Tobacco, Henan Agricultural University, Zhengzhou 450002, Henan, China
| | - Ke Zhao
- College of Tobacco, Henan Agricultural University, Zhengzhou 450002, Henan, China
| | - Yunjie Wu
- College of Tobacco, Henan Agricultural University, Zhengzhou 450002, Henan, China
| | - Tiezhao Yang
- College of Tobacco, Henan Agricultural University, Zhengzhou 450002, Henan, China.
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The Distribution of Lectins across the Phylum Nematoda: A Genome-Wide Search. Int J Mol Sci 2017; 18:ijms18010091. [PMID: 28054982 PMCID: PMC5297725 DOI: 10.3390/ijms18010091] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2016] [Revised: 12/20/2016] [Accepted: 12/28/2016] [Indexed: 12/13/2022] Open
Abstract
Nematodes are a very diverse phylum that has adapted to nearly every ecosystem. They have developed specialized lifestyles, dividing the phylum into free-living, animal, and plant parasitic species. Their sheer abundance in numbers and presence in nearly every ecosystem make them the most prevalent animals on earth. In this research nematode-specific profiles were designed to retrieve predicted lectin-like domains from the sequence data of nematode genomes and transcriptomes. Lectins are carbohydrate-binding proteins that play numerous roles inside and outside the cell depending on their sugar specificity and associated protein domains. The sugar-binding properties of the retrieved lectin-like proteins were predicted in silico. Although most research has focused on C-type lectin-like, galectin-like, and calreticulin-like proteins in nematodes, we show that the lectin-like repertoire in nematodes is far more diverse. We focused on C-type lectins, which are abundantly present in all investigated nematode species, but seem to be far more abundant in free-living species. Although C-type lectin-like proteins are omnipresent in nematodes, we have shown that only a small part possesses the residues that are thought to be essential for carbohydrate binding. Curiously, hevein, a typical plant lectin domain not reported in animals before, was found in some nematode species.
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Mantelin S, Bellafiore S, Kyndt T. Meloidogyne graminicola: a major threat to rice agriculture. MOLECULAR PLANT PATHOLOGY 2017; 18:3-15. [PMID: 26950515 PMCID: PMC6638252 DOI: 10.1111/mpp.12394] [Citation(s) in RCA: 68] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
TAXONOMY Superkingdom Eukaryota; Kingdom Metazoa; Phylum Nematoda; Class Chromadorea; Order Tylenchida; Suborder Tylenchina; Infraorder Tylenchomorpha; Superfamily Tylenchoidea; Family Meloidogynidae; Subfamily Meloidogyninae; Genus Meloidogyne. BIOLOGY Microscopic non-segmented roundworm. Plant pathogen; obligate sedentary endoparasitic root-knot nematode. Reproduction: facultative meiotic parthenogenetic species in which amphimixis can occur at a low frequency (c. 0.5%); relatively fast life cycle completed in 19-27 days on rice depending on the temperature range. HOST RANGE Reported to infect over 100 plant species, including cereals and grass plants, as well as dicotyledonous plants. Main host: rice (Oryza sativa). SYMPTOMS Characteristic hook-shaped galls (root swellings), mainly formed at the root tips of infected plants. Alteration of the root vascular system causes disruption of water and nutrient transport, stunting, chlorosis and loss of vigour, resulting in poor growth and reproduction of the plants with substantial yield losses in crops. DISEASE CONTROL Nematicides, chemical priming, constant immersion of rice in irrigated fields, crop rotation with resistant or non-host plants, use of nematode-free planting material. Some sources of resistance to Meloidogyne graminicola have been identified in African rice species (O. glaberrima and O. longistaminata), as well as in a few Asian rice cultivars. AGRONOMIC IMPORTANCE Major threat to rice agriculture, particularly in Asia. Adapted to flooded conditions, Meloidogyne graminicola causes problems in all types of rice agrosystems.
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Affiliation(s)
- Sophie Mantelin
- The James Hutton Institute, Dundee Effector ConsortiumInvergowrieDundeeDD2 5DAUK
| | - Stéphane Bellafiore
- IRD‐CIRAD‐Université Montpellier II, UMR Interactions Plantes Microorganismes Environnement (IPME)34394MontpellierFrance
- LMI‐RICEHanoiVietnam
| | - Tina Kyndt
- Department of Molecular BiotechnologyGhent University9000GhentBelgium
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Li X, Yang D, Niu J, Zhao J, Jian H. De Novo Analysis of the Transcriptome of Meloidogyne enterolobii to Uncover Potential Target Genes for Biological Control. Int J Mol Sci 2016; 17:E1442. [PMID: 27598122 PMCID: PMC5037721 DOI: 10.3390/ijms17091442] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2016] [Revised: 08/19/2016] [Accepted: 08/24/2016] [Indexed: 12/03/2022] Open
Abstract
Meloidogyne enterolobii is one of the obligate biotrophic root-knot nematodes that has the ability to reproduce on many economically-important crops. We carried out de novo sequencing of the transcriptome of M. enterolobii using Roche GS FLX and obtained 408,663 good quality reads that were assembled into 8193 contigs and 31,860 singletons. We compared the transcripts in different nematodes that were potential targets for biological control. These included the transcripts that putatively coded for CAZymes, kinases, neuropeptide genes and secretory proteins and those that were involved in the RNAi pathway and immune signaling. Typically, 75 non-membrane secretory proteins with signal peptides secreted from esophageal gland cells were identified as putative effectors, three of which were preliminarily examined using a PVX (pGR107)-based high-throughput transient plant expression system in Nicotiana benthamiana (N. benthamiana). Results showed that these candidate proteins suppressed the programmed cell death (PCD) triggered by the pro-apoptosis protein BAX, and one protein also caused necrosis, suggesting that they might suppress plant immune responses to promote pathogenicity. In conclusion, the current study provides comprehensive insight into the transcriptome of M. enterolobii for the first time and lays a foundation for further investigation and biological control strategies.
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Affiliation(s)
- Xiangyang Li
- Department of Plant Pathology, China Agricultural University, Beijing 100193, China.
- Beijing University of Agriculture, Beijing 102206, China.
| | - Dan Yang
- Department of Plant Pathology, China Agricultural University, Beijing 100193, China.
| | - Junhai Niu
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Danzhou 571737, China.
- Hainan Engineering Technology Research Center for Tropical Ornamental Plant Germplasm Innovation and Utilization, Danzhou 571737, China.
| | - Jianlong Zhao
- Department of Plant Pathology, China Agricultural University, Beijing 100193, China.
| | - Heng Jian
- Department of Plant Pathology, China Agricultural University, Beijing 100193, China.
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Petitot AS, Dereeper A, Agbessi M, Da Silva C, Guy J, Ardisson M, Fernandez D. Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants. MOLECULAR PLANT PATHOLOGY 2016; 17:860-74. [PMID: 26610268 PMCID: PMC6638361 DOI: 10.1111/mpp.12334] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2015] [Revised: 10/09/2015] [Accepted: 10/09/2015] [Indexed: 05/15/2023]
Abstract
Root-knot nematodes secrete proteinaceous effectors into plant tissues to facilitate infection by suppressing host defences and reprogramming the host metabolism to their benefit. Meloidogyne graminicola is a major pest of rice (Oryza sativa) in Asia and Latin America, causing important crop losses. The goal of this study was to identify M. graminicola pathogenicity genes expressed during the plant-nematode interaction. Using the dual RNA-sequencing (RNA-seq) strategy, we generated transcriptomic data of M. graminicola samples covering the pre-parasitic J2 stage and five parasitic stages in rice plants, from the parasitic J2 to the adult female. In the absence of a reference genome, a de novo M. graminicola transcriptome of 66 396 contigs was obtained from those reads that were not mapped on the rice genome. Gene expression profiling across the M. graminicola life cycle revealed key genes involved in nematode development and provided insights into the genes putatively associated with parasitism. The development of a 'secreted protein prediction' pipeline revealed a typical set of proteins secreted by nematodes, as well as a large number of cysteine-rich proteins and putative nuclear proteins. Combined with expression data, this pipeline enabled the identification of 15 putative effector genes, including two homologues of well-characterized effectors from cyst nematodes (CLE-like and VAP1) and a metallothionein. The localization of gene expression was assessed by in situ hybridization for a subset of candidates. All of these data represent important molecular resources for the elucidation of M. graminicola biology and for the selection of potential targets for the development of novel control strategies for this nematode species.
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Affiliation(s)
- Anne-Sophie Petitot
- IRD, UMR IRD-Cirad-UM2 Interactions Plantes-Microbes-Environnement, 34394, Montpellier Cedex 5, France
| | - Alexis Dereeper
- IRD, UMR IRD-Cirad-UM2 Interactions Plantes-Microbes-Environnement, 34394, Montpellier Cedex 5, France
| | - Mawusse Agbessi
- IRD, UMR IRD-Cirad-UM2 Interactions Plantes-Microbes-Environnement, 34394, Montpellier Cedex 5, France
| | - Corinne Da Silva
- CEA, Institut de Génomique, GENOSCOPE - Centre National de Séquençage, 91057, Evry Cedex, France
| | - Julie Guy
- CEA, Institut de Génomique, GENOSCOPE - Centre National de Séquençage, 91057, Evry Cedex, France
| | - Morgane Ardisson
- INRA, UMR Amélioration Génétique et Adaptation des Plantes, 34060, Montpellier Cedex 1, France
| | - Diana Fernandez
- IRD, UMR IRD-Cirad-UM2 Interactions Plantes-Microbes-Environnement, 34394, Montpellier Cedex 5, France
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Favery B, Quentin M, Jaubert-Possamai S, Abad P. Gall-forming root-knot nematodes hijack key plant cellular functions to induce multinucleate and hypertrophied feeding cells. JOURNAL OF INSECT PHYSIOLOGY 2016. [PMID: 26211599 DOI: 10.1016/j.jinsphys.2015.07.013] [Citation(s) in RCA: 71] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Among plant-parasitic nematodes, the root-knot nematodes (RKNs) of the Meloidogyne spp. are the most economically important genus. RKN are root parasitic worms able to infect nearly all crop species and have a wide geographic distribution. During infection, RKNs establish and maintain an intimate relationship with the host plant. This includes the creation of a specialized nutritional structure composed of multinucleate and hypertrophied giant cells, which result from the redifferentiation of vascular root cells. Giant cells constitute the sole source of nutrients for the nematode and are essential for growth and reproduction. Hyperplasia of surrounding root cells leads to the formation of the gall or root-knot, an easily recognized symptom of plant infection by RKNs. Secreted effectors produced in nematode salivary glands and injected into plant cells through a specialized feeding structure called the stylet play a critical role in the formation of giant cells. Here, we describe the complex interactions between RKNs and their host plants. We highlight progress in understanding host plant responses, focusing on how RKNs manipulate key plant processes and functions, including cell cycle, defence, hormones, cellular scaffold, metabolism and transport.
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Affiliation(s)
- Bruno Favery
- INRA, UMR 1355 Institut Sophia Agrobiotech, 06900 Sophia-Antipolis, France; Univ. Nice Sophia Antipolis, UMR 7254 Institut Sophia Agrobiotech, 06900 Sophia-Antipolis, France; CNRS, UMR 7254 Institut Sophia Agrobiotech, 06900 Sophia-Antipolis, France
| | - Michaël Quentin
- INRA, UMR 1355 Institut Sophia Agrobiotech, 06900 Sophia-Antipolis, France; Univ. Nice Sophia Antipolis, UMR 7254 Institut Sophia Agrobiotech, 06900 Sophia-Antipolis, France; CNRS, UMR 7254 Institut Sophia Agrobiotech, 06900 Sophia-Antipolis, France
| | - Stéphanie Jaubert-Possamai
- INRA, UMR 1355 Institut Sophia Agrobiotech, 06900 Sophia-Antipolis, France; Univ. Nice Sophia Antipolis, UMR 7254 Institut Sophia Agrobiotech, 06900 Sophia-Antipolis, France; CNRS, UMR 7254 Institut Sophia Agrobiotech, 06900 Sophia-Antipolis, France
| | - Pierre Abad
- INRA, UMR 1355 Institut Sophia Agrobiotech, 06900 Sophia-Antipolis, France; Univ. Nice Sophia Antipolis, UMR 7254 Institut Sophia Agrobiotech, 06900 Sophia-Antipolis, France; CNRS, UMR 7254 Institut Sophia Agrobiotech, 06900 Sophia-Antipolis, France.
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Vieira P, Eves-van den Akker S, Verma R, Wantoch S, Eisenback JD, Kamo K. The Pratylenchus penetrans Transcriptome as a Source for the Development of Alternative Control Strategies: Mining for Putative Genes Involved in Parasitism and Evaluation of in planta RNAi. PLoS One 2015; 10:e0144674. [PMID: 26658731 PMCID: PMC4684371 DOI: 10.1371/journal.pone.0144674] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2015] [Accepted: 11/20/2015] [Indexed: 11/25/2022] Open
Abstract
The root lesion nematode Pratylenchus penetrans is considered one of the most economically important species within the genus. Host range studies have shown that nearly 400 plant species can be parasitized by this species. To obtain insight into the transcriptome of this migratory plant-parasitic nematode, we used Illumina mRNA sequencing analysis of a mixed population, as well as nematode reads detected in infected soybean roots 3 and 7 days after nematode infection. Over 140 million paired end reads were obtained for this species, and de novo assembly resulted in a total of 23,715 transcripts. Homology searches showed significant hit matches to 58% of the total number of transcripts using different protein and EST databases. In general, the transcriptome of P. penetrans follows common features reported for other root lesion nematode species. We also explored the efficacy of RNAi, delivered from the host, as a strategy to control P. penetrans, by targeted knock-down of selected nematode genes. Different comparisons were performed to identify putative nematode genes with a role in parasitism, resulting in the identification of transcripts with similarities to other nematode parasitism genes. Focusing on the predicted nematode secreted proteins found in this transcriptome, we observed specific members to be up-regulated at the early time points of infection. In the present study, we observed an enrichment of predicted secreted proteins along the early time points of parasitism by this species, with a significant number being pioneer candidate genes. A representative set of genes examined using RT-PCR confirms their expression during the host infection. The expression patterns of the different candidate genes raise the possibility that they might be involved in critical steps of P. penetrans parasitism. This analysis sheds light on the transcriptional changes that accompany plant infection by P. penetrans, and will aid in identifying potential gene targets for selection and use to design effective control strategies against root lesion nematodes.
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Affiliation(s)
- Paulo Vieira
- Dept. of Plant Pathology, Physiology, and Weed Science, Virginia Tech, Blacksburg, VA, 24061, United States of America
- Floral and Nursery Plants Research Unit, U.S. National Arboretum, U.S. Department of Agriculture, Beltsville, MD, 20705–2350, United States of America
| | | | - Ruchi Verma
- Floral and Nursery Plants Research Unit, U.S. National Arboretum, U.S. Department of Agriculture, Beltsville, MD, 20705–2350, United States of America
| | - Sarah Wantoch
- Floral and Nursery Plants Research Unit, U.S. National Arboretum, U.S. Department of Agriculture, Beltsville, MD, 20705–2350, United States of America
| | - Jonathan D. Eisenback
- Dept. of Plant Pathology, Physiology, and Weed Science, Virginia Tech, Blacksburg, VA, 24061, United States of America
| | - Kathryn Kamo
- Floral and Nursery Plants Research Unit, U.S. National Arboretum, U.S. Department of Agriculture, Beltsville, MD, 20705–2350, United States of America
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Molecular characterization of putative parasitism genes in the plant-parasitic nematode Meloidogyne hispanica. J Helminthol 2014; 90:28-38. [PMID: 25319213 DOI: 10.1017/s0022149x1400073x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Meloidogyne hispanica (Mhi) is a difficult-to-control polyphagous root-knot nematode (RKN) species of emerging importance for economically valuable crops. Nematode secretions are likely to be the first signals perceived by the plant and are thought to be involved in various aspects of the plant-nematode interaction. The aims of this work were to identify and characterize M. hispanica parasitism genes: cathepsin L cysteine protease (cpl-1), calreticulin (crt-1), β-1,4-endoglucanase-1 (eng-1) and manganese superoxide dismutase (mnsod). As there are no genomic data available for M. hispanica, primers were designed from the conserved regions of the putative parasitism genes in M. incognita and M. hapla and used to amplify the genes in M. hispanica, which led to the successful amplification of these genes in M. hispanica. Partial gene sequences were also obtained for M. arenaria, M. hapla, M. hispanica, M. incognita and M. javanica cpl-1, crt-1, eng-1 and mnsod genes, and their phylogenetic relationship analysed. In order to determine whether these genes are differentially expressed during M. hispanica development, cDNA was amplified from mRNA isolated from eggs, second-stage juveniles (J2) and females. Amplification products were observed from cDNA of all developmental stages for the Mhi-cpl-1 and Mhi-crt-1 genes. However, the gene Mhi-crt-1 exhibited intense amplification bands in females, while the Mhi-eng-1 gene was equally amplified in eggs and J2 and the Mhi-mnsod gene was only expressed in eggs. In comparison to the other RKN species, the genes Mhi-eng-1 and Mhi-mnsod showed transcription in different nematode developmental stages.
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Wang F, Li D, Wang Z, Dong A, Liu L, Wang B, Chen Q, Liu X. Transcriptomic analysis of the rice white tip nematode, Aphelenchoides besseyi (Nematoda: Aphelenchoididae). PLoS One 2014; 9:e91591. [PMID: 24637831 PMCID: PMC3956754 DOI: 10.1371/journal.pone.0091591] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2013] [Accepted: 02/13/2014] [Indexed: 01/09/2023] Open
Abstract
Background The rice white tip nematode Aphelenchoides besseyi, a devastating nematode whose genome has not been sequenced, is distributed widely throughout almost all the rice-growing regions of the world. The aims of the present study were to define the transcriptome of A. besseyi and to identify parasite-related, mortality-related or host resistance-overcoming genes in this nematode. Methodology and Principal Findings Using Solexa/Illumina sequencing, we profiled the transcriptome of mixed-stage populations of A. besseyi. A total of 51,270 transcripts without gaps were produced based on high-quality clean reads. Of all the A. besseyi transcripts, 9,132 KEGG Orthology assignments were annotated. Carbohydrate-active enzymes of glycoside hydrolases (GHs), glycosyltransferases (GTs), carbohydrate esterases (CEs) and carbohydrate-binding modules (CBMs) were identified. The presence of the A. besseyi GH45 cellulase gene was verified by in situ hybridization. Given that 13 unique A. besseyi potential effector genes were identified from 41 candidate effector homologs, further studies of these homologs are merited. Finally, comparative analyses were conducted between A. besseyi contigs and Caenorhabditis elegans genes to look for orthologs of RNAi phenotypes, neuropeptides and peptidases. Conclusions and Significance The present results provide comprehensive insight into the genetic makeup of A. besseyi. Many of this species' genes are parasite related, nematode mortality-related or necessary to overcome host resistance. The generated transcriptome dataset of A. besseyi reported here lays the foundation for further studies of the molecular mechanisms related to parasitism and facilitates the development of new control strategies for this species.
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Affiliation(s)
- Feng Wang
- College of Forestry, Northeast Forestry University, Harbin, Heilongjiang, China
| | - Danlei Li
- College of Forestry, Northeast Forestry University, Harbin, Heilongjiang, China
- * E-mail:
| | - Zhiying Wang
- College of Forestry, Northeast Forestry University, Harbin, Heilongjiang, China
| | - Airong Dong
- College of Forestry, Northeast Forestry University, Harbin, Heilongjiang, China
| | - Lihong Liu
- College of Forestry, Northeast Forestry University, Harbin, Heilongjiang, China
| | - Buyong Wang
- College of Forestry, Northeast Forestry University, Harbin, Heilongjiang, China
| | - Qiaoli Chen
- College of Forestry, Northeast Forestry University, Harbin, Heilongjiang, China
| | - Xiaohan Liu
- College of Forestry, Northeast Forestry University, Harbin, Heilongjiang, China
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