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Wong MY, Wurzburger N, Hall JS, Wright SJ, Tang W, Hedin LO, Saltonstall K, van Breugel M, Batterman SA. Trees adjust nutrient acquisition strategies across tropical forest secondary succession. THE NEW PHYTOLOGIST 2024; 243:132-144. [PMID: 38742309 DOI: 10.1111/nph.19812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 04/23/2024] [Indexed: 05/16/2024]
Abstract
Nutrient limitation may constrain the ability of recovering and mature tropical forests to serve as a carbon sink. However, it is unclear to what extent trees can utilize nutrient acquisition strategies - especially root phosphatase enzymes and mycorrhizal symbioses - to overcome low nutrient availability across secondary succession. Using a large-scale, full factorial nitrogen and phosphorus fertilization experiment of 76 plots along a secondary successional gradient in lowland wet tropical forests of Panama, we tested the extent to which root phosphatase enzyme activity and mycorrhizal colonization are flexible, and if investment shifts over succession, reflective of changing nutrient limitation. We also conducted a meta-analysis to test how tropical trees adjust these strategies in response to nutrient additions and across succession. We find that tropical trees are dynamic, adjusting investment in strategies - particularly root phosphatase - in response to changing nutrient conditions through succession. These changes reflect a shift from strong nitrogen to weak phosphorus limitation over succession. Our meta-analysis findings were consistent with our field study; we found more predictable responses of root phosphatase than mycorrhizal colonization to nutrient availability. Our findings suggest that nutrient acquisition strategies respond to nutrient availability and demand in tropical forests, likely critical for alleviating nutrient limitation.
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Affiliation(s)
- Michelle Y Wong
- Cary Institute of Ecosystem Studies, Millbrook, NY, 12545, USA
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520, USA
| | - Nina Wurzburger
- Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
| | - Jefferson S Hall
- ForestGEO, Smithsonian Tropical Research Institute, Ancón, 0843-03092, Panama, Panama
| | - S Joseph Wright
- Smithsonian Tropical Research Institute, Apartado, 0843-03092, Balboa, Panama
| | - Wenguang Tang
- School of Geography and Priestley International Centre for Climate, University of Leeds, Leeds, LS2, UK
| | - Lars O Hedin
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, 08544, USA
| | - Kristin Saltonstall
- Smithsonian Tropical Research Institute, Apartado, 0843-03092, Balboa, Panama
| | - Michiel van Breugel
- ForestGEO, Smithsonian Tropical Research Institute, Ancón, 0843-03092, Panama, Panama
- Department of Geography, National University of Singapore, Singapore, 119077, Singapore
- Yale-NUS College, Singapore, 138527, Singapore
| | - Sarah A Batterman
- Cary Institute of Ecosystem Studies, Millbrook, NY, 12545, USA
- Smithsonian Tropical Research Institute, Apartado, 0843-03092, Balboa, Panama
- School of Geography and Priestley International Centre for Climate, University of Leeds, Leeds, LS2, UK
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Olanipon D, Boeraeve M, Jacquemyn H. Arbuscular mycorrhizal fungal diversity and potential association networks among African tropical forest trees. MYCORRHIZA 2024; 34:271-282. [PMID: 38850289 DOI: 10.1007/s00572-024-01156-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Accepted: 05/26/2024] [Indexed: 06/10/2024]
Abstract
Tropical forests represent one of the most diverse and productive ecosystems on Earth. High productivity is sustained by efficient and rapid cycling of nutrients, which is in large part made possible by symbiotic associations between plants and mycorrhizal fungi. In these associations, an individual plant typically associates simultaneously with multiple fungi and the fungi associate with multiple plants, creating complex networks among fungi and plants. However, there are few studies that have investigated mycorrhizal fungal composition and diversity in tropical forest trees, particularly in Africa, or that assessed the structure of the network of associations among fungi and trees. In this study, we collected root and soil samples from Ise Forest Reserve (Southwest Nigeria) and used a metabarcoding approach to identify the dominant arbuscular mycorrhizal (AM) fungal taxa in the soil and associating with ten co-occurring tree species to assess variation in AM communities. Network analysis was used to elucidate the architecture of the network of associations between fungi and tree species. A total of 194 Operational Taxonomic Units (OTUs) belonging to six AM fungal families were identified, with 68% of all OTUs belonging to Glomeraceae. While AM fungal diversity did not differ among tree species, AM fungal community composition did. Network analyses showed that the network of associations was not significantly nested and showed a relatively low level of specialization (H2 = 0.43) and modularity (M = 0.44). We conclude that, although there were some differences in AM fungal community composition, the studied tree species associate with a large number of AM fungi. Similarly, most AM fungi had great host breadth and were detected in most tree species, thereby potentially working as interaction network hubs.
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Affiliation(s)
- Damilola Olanipon
- Department of Biological Sciences, Afe Babalola University, Ado Ekiti, Nigeria.
| | - Margaux Boeraeve
- Department of Soil and Environment, Swedish University of Agricultural Sciences, Uppsala, Sweden
- Department of Biology, UAntwerpen, Antwerpen, Belgium
| | - Hans Jacquemyn
- Biology Department, KU Leuven, Kasteelpark Arenberg 31, Heverlee, B-3001, Belgium
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Li Y, Bao G, Zhang P, Feng X, Ma J, Lu H, Shi H, Wei X, Tang B, Liu K. Changes in bud bank and their correlation with plant community composition in degraded alpine meadows. FRONTIERS IN PLANT SCIENCE 2023; 14:1259340. [PMID: 37900741 PMCID: PMC10613031 DOI: 10.3389/fpls.2023.1259340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/15/2023] [Accepted: 09/26/2023] [Indexed: 10/31/2023]
Abstract
Bud banks are considered a crucial factor in regulating the species composition of grassland communities and maintaining the ecological function of alpine grasslands. However, few studies have paid attention to the dynamic changes of bud banks from undisturbed to severely degraded alpine meadows. Therefore, this study examined the correlations between plant diversity and bud bank traits at different stages of alpine meadows degradation. Grass biomasses and plant diversity were found to be highest in moderately degraded meadows, and sedge biomasses were highest in lightly degraded meadows. Lack of disturbance and moderate disturbance by herbivores increased the bud bank density of alpine meadows. Consistent with the changes in bud bank density, bud bank diversity was highest in undisturbed meadows. The structural equation model indicated that the densities of rhizome and the densities and diversities of tiller buds play crucial roles in facilitating the greater diversity of the plant community. Our findings suggest that the diversities and densities of rhizome and tiller buds in the degradation stages are synchronized with changes in plant diversity, and in the regenerative ability of bud banks, which largely determine the outcome of restoration in degraded meadows. These findings could provide a frame of reference for effectively restoring degraded alpine regions by regenerating bud banks. The potential driving force and renewal capacity of bud banks should be taken into account in restoring the Qinghai-Tibet Plateau's degraded meadow.
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Affiliation(s)
- Yuan Li
- Academy of Animal and Veterinary Medicine, Qinghai University, Xining, China
| | - Gensheng Bao
- Academy of Animal and Veterinary Medicine, Qinghai University, Xining, China
- State Key Laboratory of Sanjiangyuan Ecology and Plateau Agriculture and Animal Husbandry, Qinghai University, Xining, China
| | - Peng Zhang
- Academy of Animal and Veterinary Medicine, Qinghai University, Xining, China
| | - Xiaoyun Feng
- Academy of Animal and Veterinary Medicine, Qinghai University, Xining, China
| | - Jingjuan Ma
- Academy of Animal and Veterinary Medicine, Qinghai University, Xining, China
| | - Hainian Lu
- Academy of Animal and Veterinary Medicine, Qinghai University, Xining, China
| | - Hongxiao Shi
- Grassland Research Institute of the Chinese Academy of Agricultural Science, Hohhot, China
| | - Xiaoxing Wei
- Academy of Animal and Veterinary Medicine, Qinghai University, Xining, China
- State Key Laboratory of Sanjiangyuan Ecology and Plateau Agriculture and Animal Husbandry, Qinghai University, Xining, China
| | | | - Kai Liu
- Qinghai Provincial Grassland Station, Xining, China
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Arévalo-Granda V, Hickey-Darquea A, Prado-Vivar B, Zapata S, Duchicela J, van ‘t Hof P. Exploring the mycobiome and arbuscular mycorrhizal fungi associated with the rizosphere of the genus Inga in the pristine Ecuadorian Amazon. FRONTIERS IN FUNGAL BIOLOGY 2023; 4:1086194. [PMID: 37746118 PMCID: PMC10512398 DOI: 10.3389/ffunb.2023.1086194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Accepted: 02/20/2023] [Indexed: 09/26/2023]
Abstract
This study explored the composition of the mycobiome in the rhizosphere of Inga seedlings in two different but neighboring forest ecosystems in the undisturbed tropical Amazon rainforest at the Tiputini Biodiversity Station in Ecuador. In terra firme plots, which were situated higher up and therefore typically outside of the influence of river floods, and in várzea plots, the lower part of the forest located near the riverbanks and therefore seasonally flooded, tree seedlings of the genus Inga were randomly collected and measured, and the rhizosphere soils surrounding the root systems was collected. Members of the Fabaceae family and the genus Inga were highly abundant in both forest ecosystems. Inga sp. seedlings collected in terra firme showed a lower shoot to root ratio compared to seedlings that were collected in várzea, suggesting that Inga seedlings which germinated in várzea soils could invest more resources in vegetative growth with shorter roots. Results of the physical-chemical properties of soil samples indicated higher proportions of N, Mo, and V in terra firme soils, whereas várzea soils present higher concentrations of all other macro- and micronutrients, which confirmed the nutrient deposition effect of seasonal flooding by the nearby river. ITS metabarcoding was used to explore the mycobiome associated with roots of the genus Inga. Bioinformatic analysis was performed using Qiime 2 to calculate the alpha and beta diversity, species taxonomy and the differential abundance of fungi and arbuscular mycorrhizal fungi. The fungal community represented 75% of the total ITS ASVs, and although present in all samples, the subphylum Glomeromycotina represented 1.42% of all ITS ASVs with annotations to 13 distinct families, including Glomeraceae (72,23%), Gigasporaceae (0,57%), Acaulosporaceae (0,49%). AMF spores of these three AMF families were morphologically identified by microscopy. Results of this study indicate that AMF surround the rhizosphere of Inga seedlings in relatively low proportions compared to other fungal groups but present in both terra firme and várzea Neotropical ecosystems.
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Affiliation(s)
- Valentina Arévalo-Granda
- Department of Biological and Environmental Sciences - COCIBA, Universidad San Francisco de Quito-USFQ, Quito, Ecuador
- Institute of Microbiology, Universidad San Francisco de Quito-USFQ, Quito, Ecuador
| | - Aileen Hickey-Darquea
- Department of Biological and Environmental Sciences - COCIBA, Universidad San Francisco de Quito-USFQ, Quito, Ecuador
| | - Belén Prado-Vivar
- Institute of Microbiology, Universidad San Francisco de Quito-USFQ, Quito, Ecuador
| | - Sonia Zapata
- Department of Biological and Environmental Sciences - COCIBA, Universidad San Francisco de Quito-USFQ, Quito, Ecuador
- Institute of Microbiology, Universidad San Francisco de Quito-USFQ, Quito, Ecuador
- Tiputini Biodiversity Station, Department of Biological and Environmental Sciences - COCIBA, Universidad San Francisco de Quito-USFQ, Quito, Ecuador
| | - Jéssica Duchicela
- Department of Life Sciences and Agriculture, Universidad de las Fuerzas Armadas-ESPE, Sangolquí, Ecuador
| | - Pieter van ‘t Hof
- Department of Biological and Environmental Sciences - COCIBA, Universidad San Francisco de Quito-USFQ, Quito, Ecuador
- Institute of Microbiology, Universidad San Francisco de Quito-USFQ, Quito, Ecuador
- Tiputini Biodiversity Station, Department of Biological and Environmental Sciences - COCIBA, Universidad San Francisco de Quito-USFQ, Quito, Ecuador
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Edy N, Barus HN, Finkeldey R, Polle A. Host plant richness and environment in tropical forest transformation systems shape arbuscular mycorrhizal fungal richness. FRONTIERS IN PLANT SCIENCE 2022; 13:1004097. [PMID: 36311137 PMCID: PMC9606760 DOI: 10.3389/fpls.2022.1004097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
Transformation of tropical lowland rain forests into rubber tree and oil palm plantations is the cause of massive loss of vegetation diversity. The consequences for associated mycorrhizal fungi are not fully understood. We hypothesized that generalist arbuscular mycorrhizal fungi are resistant to removal of host species richness and that forest conversion to oil palm and rubber leads to loss of arbuscular mycorrhizal fungal (AMF) species with host preferences. Plant identities and AMF species were determined by molecular barcoding of 112 roots collected in three land-use systems (rain forest, rubber tree and oil palm plantation) in two landscapes on Sumatra (Indonesia), a world hotspot of forest transformation. The collected roots were from 43 forest plant species, in addition to rubber trees and oil palms. We detected 28 AMF species of which about 75% were present in forest trees and 25% shared among the land use systems. Only one AMF species present in plantation roots was not detected in the analyzed forest roots. Host specificity of arbuscular mycorrhizal fungi was not detected. Oil palm and rubber tree roots exhibited a strong reduction in AMF richness compared with roots from rainforests and were differentiated by soil resources. On basis of an individual root, oil palm had a lower AMF species richness than forest or rubber tree roots. Our results demonstrate that tropical AMF communities are shaped by two mechanisms: (i) root habitat diversity as the result of plant diversity and (ii) habitat properties as the result of plant traits or environmental conditions and management. Collectively, deterioration of habitat diversity and properties exacerbates impoverishment of AMF assemblages.
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Affiliation(s)
- Nur Edy
- Forest Botany and Tree Physiology, University of Goettingen, Göttingen, Germany
- Department of Agrotechnology, Tadulako University, Palu, Indonesia
| | | | | | - Andrea Polle
- Forest Botany and Tree Physiology, University of Goettingen, Göttingen, Germany
- Center of Biodiversity and Sustainable Land Use, University of Goettingen, Göttingen, Germany
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Xu X, Qiu Y, Zhang K, Yang F, Chen M, Luo X, Yan X, Wang P, Zhang Y, Chen H, Guo H, Jiang L, Hu S. Climate warming promotes deterministic assembly of arbuscular mycorrhizal fungal communities. GLOBAL CHANGE BIOLOGY 2022; 28:1147-1161. [PMID: 34668627 DOI: 10.1111/gcb.15945] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 09/20/2021] [Indexed: 06/13/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) significantly contribute to plant resource acquisition and play important roles in mediating plant interactions and soil carbon (C) dynamics. However, it remains unclear how AMF communities respond to climate change. We assessed impacts of warming and precipitation alterations (30% increase or decrease) on soil AMF communities, and examined major ecological processes shaping the AMF community assemblage in a Tibetan alpine meadow. Our results showed that warming significantly increased root biomass, and available nitrogen (N) and phosphorus (P) in soil. While precipitation alterations increased AMF abundances, they did not significantly affect the composition or diversity of AMF communities. In contrast, warming altered the composition of AMF communities and reduced their Shannon-Wiener index and Pielou's evenness. In particular, warming shifted the AMF community composition in favor of Diversisporaceae over Glomeraceae, likely through its impact on soil N and P availability. In addition, AMF communities were phylogenetically random in the unwarmed control but clustered in warming plots, implying more deterministic community assembly under climate warming. Warming enhancement of root growth, N and P availability likely reduced plant C-allocation to AMF, imposing stronger environmental filtering on AMF communities. We further proposed a conceptual framework that integrates biological and geochemical processes into a mechanistic understanding of warming and precipitation changes' effects on AMF. Taken together, these results suggest that soil AMF communities may be more sensitive to warming than expected, highlighting the need to monitor their community structure and associated functional consequences on plant communities and soil C dynamics under the future warmer climate.
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Affiliation(s)
- Xinyu Xu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Yunpeng Qiu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Kangcheng Zhang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Fei Yang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Mengfei Chen
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Xi Luo
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Xuebin Yan
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Peng Wang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Yi Zhang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Huaihai Chen
- School of Ecology, Sun Yat-sen University, Guangzhou, China
| | - Hui Guo
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Lin Jiang
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA
| | - Shuijin Hu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
- Department of Entomology & Plant Pathology, North Carolina State University, Raleigh, North Carolina, USA
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7
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Diversity of Arbuscular Mycorrhizal Fungi in the Ecuadorian Amazon Region. Fungal Biol 2022. [DOI: 10.1007/978-3-031-12994-0_7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
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Differential Responses of Arbuscular Mycorrhizal Fungal Communities to Long-Term Fertilization in the Wheat Rhizosphere and Root Endosphere. Appl Environ Microbiol 2021; 87:e0034921. [PMID: 34160265 DOI: 10.1128/aem.00349-21] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Arbuscular mycorrhizal fungi (AMF) provide essential nutrients to crops and are critically impacted by fertilization in agricultural ecosystems. Understanding shifts in AMF communities in and around crop roots under different fertilization regimes can provide important lessons for improving agricultural production and sustainability. Here, we compared the responses of AMF communities in the rhizosphere (RS) and root endosphere (ES) of wheat (Triticum aestivum) to different fertilization treatments, nonfertilization (control), mineral fertilization only (NPK), mineral fertilization plus wheat straw (NPKS), and mineral fertilization plus cow manure (NPKM). We employed high-throughput amplicon sequencing and investigated the diversity, community composition, and network structure of AMF communities to assess their responses to fertilization. Our results elucidated that AMF communities in the RS and ES respond differently to fertilization schemes. Long-term NPK application decreased the RS AMF alpha diversity significantly, whereas additional organic amendments (straw or manure) had no effect. In contrast, NPK fertilization increased the ES AMF alpha diversity significantly, while additional organic amendments decreased it significantly. The effect of different fertilization schemes on AMF network complexity in the RS and ES were similar to their effects on alpha diversity. Changes to AMF communities in the RS and ES correlated mainly with the pH and phosphorus level of the rhizosphere soil under long-term inorganic and organic fertilization regimes. We suggest that the AMF community in the roots should be given more consideration when studying the effects of fertilization regimes on AMF in agroecosystems. IMPORTANCE Arbuscular mycorrhizal fungi are an integral component of rhizospheres, bridging the soil and plant systems and are highly sensitive to fertilization. However, surprisingly little is known about how the response differs between the roots and the surrounding soil. Decreasing arbuscular mycorrhizal fungal diversity under fertilization has been reported, implying a potential reduction in the mutualism between plants and arbuscular mycorrhizal fungi. However, we found opposing responses to long-term fertilization managements of arbuscular mycorrhizal fungi in the wheat roots and rhizosphere soil. These results suggested that changes in the arbuscular mycorrhizal fungal community in soils do not reflect those in the roots, highlighting that the root arbuscular mycorrhizal fungal community is pertinent to understand arbuscular mycorrhizal fungi and their crop hosts' responses to anthropogenic influences.
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Urbina I, Grau O, Sardans J, Margalef O, Peguero G, Asensio D, LLusià J, Ogaya R, Gargallo‐Garriga A, Van Langenhove L, Verryckt LT, Courtois EA, Stahl C, Soong JL, Chave J, Hérault B, Janssens IA, Sayer E, Peñuelas J. High foliar K and P resorption efficiencies in old-growth tropical forests growing on nutrient-poor soils. Ecol Evol 2021; 11:8969-8982. [PMID: 34257939 PMCID: PMC8258221 DOI: 10.1002/ece3.7734] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Revised: 03/04/2021] [Accepted: 05/15/2021] [Indexed: 11/11/2022] Open
Abstract
Resorption is the active withdrawal of nutrients before leaf abscission. This mechanism represents an important strategy to maintain efficient nutrient cycling; however, resorption is poorly characterized in old-growth tropical forests growing in nutrient-poor soils. We investigated nutrient resorption from leaves in 39 tree species in two tropical forests on the Guiana Shield, French Guiana, to investigate whether resorption efficiencies varied with soil nutrient, seasonality, and species traits. The stocks of P in leaves, litter, and soil were low at both sites, indicating potential P limitation of the forests. Accordingly, mean resorption efficiencies were higher for P (35.9%) and potassium (K; 44.6%) than for nitrogen (N; 10.3%). K resorption was higher in the wet (70.2%) than in the dry (41.7%) season. P resorption increased slightly with decreasing total soil P; and N and P resorptions were positively related to their foliar concentrations. We conclude that nutrient resorption is a key plant nutrition strategy in these old-growth tropical forests, that trees with high foliar nutrient concentration reabsorb more nutrient, and that nutrients resorption in leaves, except P, are quite decoupled from nutrients in the soil. Seasonality and biochemical limitation played a role in the resorption of nutrients in leaves, but species-specific requirements obscured general tendencies at stand and ecosystem level.
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Affiliation(s)
- Ifigenia Urbina
- CREAFCentre de Recerca Ecològica i Aplicacions ForestalsBellaterraSpain
- Consejo Superior de Investigaciones CientíficasGlobal Ecology UnitUniversidad Autònoma de BarcelonaBellaterraSpain
| | - Oriol Grau
- CREAFCentre de Recerca Ecològica i Aplicacions ForestalsBellaterraSpain
- Consejo Superior de Investigaciones CientíficasGlobal Ecology UnitUniversidad Autònoma de BarcelonaBellaterraSpain
- CIRADUMR EcoFoG (AgroParisTech, CNRS, INRA, Univ Antilles, Univ. Guyane)KourouFrench Guiana
| | - Jordi Sardans
- CREAFCentre de Recerca Ecològica i Aplicacions ForestalsBellaterraSpain
- Consejo Superior de Investigaciones CientíficasGlobal Ecology UnitUniversidad Autònoma de BarcelonaBellaterraSpain
| | - Olga Margalef
- CREAFCentre de Recerca Ecològica i Aplicacions ForestalsBellaterraSpain
- Consejo Superior de Investigaciones CientíficasGlobal Ecology UnitUniversidad Autònoma de BarcelonaBellaterraSpain
| | - Guillermo Peguero
- CREAFCentre de Recerca Ecològica i Aplicacions ForestalsBellaterraSpain
- Consejo Superior de Investigaciones CientíficasGlobal Ecology UnitUniversidad Autònoma de BarcelonaBellaterraSpain
| | - Dolores Asensio
- CREAFCentre de Recerca Ecològica i Aplicacions ForestalsBellaterraSpain
- Consejo Superior de Investigaciones CientíficasGlobal Ecology UnitUniversidad Autònoma de BarcelonaBellaterraSpain
| | - Joan LLusià
- CREAFCentre de Recerca Ecològica i Aplicacions ForestalsBellaterraSpain
- Consejo Superior de Investigaciones CientíficasGlobal Ecology UnitUniversidad Autònoma de BarcelonaBellaterraSpain
| | - Romà Ogaya
- CREAFCentre de Recerca Ecològica i Aplicacions ForestalsBellaterraSpain
- Consejo Superior de Investigaciones CientíficasGlobal Ecology UnitUniversidad Autònoma de BarcelonaBellaterraSpain
| | - Albert Gargallo‐Garriga
- CREAFCentre de Recerca Ecològica i Aplicacions ForestalsBellaterraSpain
- Consejo Superior de Investigaciones CientíficasGlobal Ecology UnitUniversidad Autònoma de BarcelonaBellaterraSpain
| | - Leandro Van Langenhove
- Department of BiologyCentre of Excellence PLECO (Plants and Ecosystems)University of AntwerpWilrijkBelgium
| | - Lore T. Verryckt
- Department of BiologyCentre of Excellence PLECO (Plants and Ecosystems)University of AntwerpWilrijkBelgium
| | - Elodie A. Courtois
- CIRADUMR EcoFoG (AgroParisTech, CNRS, INRA, Univ Antilles, Univ. Guyane)KourouFrench Guiana
| | - Clément Stahl
- CIRADUMR EcoFoG (AgroParisTech, CNRS, INRA, Univ Antilles, Univ. Guyane)KourouFrench Guiana
| | - Jennifer L. Soong
- Climate and Ecosystem Science DivisionLawrence Berkeley National LaboratoryBerkeleyCAUSA
| | - Jerome Chave
- Laboratoire Evolution et Diversité BiologiqueUMR5174CNRS–Université Paul Sabatier–IRDToulouse cedex 9France
| | - Bruno Hérault
- Cirad, UR Forêts & SociétésUniversité de MontpellierMontpellierFrance
- Institut National Polytechnique Félix Houphouët‐Boigny (INP‐HB)YamoussoukroIvory Coast
| | - Ivan A. Janssens
- Department of BiologyCentre of Excellence PLECO (Plants and Ecosystems)University of AntwerpWilrijkBelgium
| | - Emma Sayer
- Lancaster Environment CentreLancaster UniversityLancasterUK
- Smithsonian Tropical Research InstitutePanamaRepublic of Panama
| | - Josep Peñuelas
- CREAFCentre de Recerca Ecològica i Aplicacions ForestalsBellaterraSpain
- Consejo Superior de Investigaciones CientíficasGlobal Ecology UnitUniversidad Autònoma de BarcelonaBellaterraSpain
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10
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Netherway T, Bengtsson J, Krab EJ, Bahram M. Biotic interactions with mycorrhizal systems as extended nutrient acquisition strategies shaping forest soil communities and functions. Basic Appl Ecol 2021. [DOI: 10.1016/j.baae.2020.10.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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11
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Diversity and Structure of Soil Fungal Communities across Experimental Everglades Tree Islands. DIVERSITY 2020. [DOI: 10.3390/d12090324] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Fungi play prominent roles in ecosystem services (e.g., nutrient cycling, decomposition) and thus have increasingly garnered attention in restoration ecology. However, it is unclear how most management decisions impact fungal communities, making it difficult to protect fungal diversity and utilize fungi to improve restoration success. To understand the effects of restoration decisions and environmental variation on fungal communities, we sequenced soil fungal microbiomes from 96 sites across eight experimental Everglades tree islands approximately 15 years after restoration occurred. We found that early restoration decisions can have enduring consequences for fungal communities. Factors experimentally manipulated in 2003–2007 (e.g., type of island core) had significant legacy effects on fungal community composition. Our results also emphasized the role of water regime in fungal diversity, composition, and function. As the relative water level decreased, so did fungal diversity, with an approximately 25% decline in the driest sites. Further, as the water level decreased, the abundance of the plant pathogen–saprotroph guild increased, suggesting that low water may increase plant-pathogen interactions. Our results indicate that early restoration decisions can have long-term consequences for fungal community composition and function and suggest that a drier future in the Everglades could reduce fungal diversity on imperiled tree islands.
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Song F, Bai F, Wang J, Wu L, Jiang Y, Pan Z. Influence of Citrus Scion/Rootstock Genotypes on Arbuscular Mycorrhizal Community Composition under Controlled Environment Condition. PLANTS 2020; 9:plants9070901. [PMID: 32708770 PMCID: PMC7412222 DOI: 10.3390/plants9070901] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Revised: 07/13/2020] [Accepted: 07/14/2020] [Indexed: 01/01/2023]
Abstract
Citrus is vegetatively propagated by grafting for commercial production, and most rootstock cultivars of citrus have scarce root hairs, thus heavily relying on mutualistic symbiosis with arbuscular mycorrhizal fungi (AMF) for mineral nutrient uptake. However, the AMF community composition, and its differences under different citrus scion/rootstock genotypes, were largely unknown. In this study, we investigated the citrus root-associated AMF diversity and richness, and assessed the influence of citrus scion/rootstock genotypes on the AMF community composition in a controlled condition, in order to exclude interferences from environmental factors and agricultural practices. As a result, a total of 613,408 Glomeromycota tags were detected in the citrus roots, and 46 AMF species were annotated against the MAARJAM database. Of these, 39 species belonged to Glomus, indicating a dominant role of the Glomus AMF in the symbiosis with citrus. PCoA analysis indicated that the AMF community’s composition was significantly impacted by both citrus scion and rootstock genotypes, but total samples were clustered according to rootstock genotype rather than scion genotype. In addition, AMF α diversity was significantly affected merely by rootstock genotype. Thus, rootstock genotype might exert a greater impact on the AMF community than scion genotype. Taken together, this study provides a comprehensive insight into the AMF community in juvenile citrus plants, and reveals the important effects of citrus genotype on AMF community composition.
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Affiliation(s)
- Fang Song
- Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
| | - Fuxi Bai
- Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
| | - Juanjuan Wang
- Institute National Agro-Technical Extension and Service Center (NATESC), Ministry of Agriculture, Beijing 100000, China
| | - Liming Wu
- Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
| | - Yingchun Jiang
- Institute of Fruit and Tea, Hubei Academy of Agricultural Sciences, Wuhan 430064, China
| | - Zhiyong Pan
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
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13
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Schappe T, Albornoz FE, Turner BL, Jones FA. Co-occurring Fungal Functional Groups Respond Differently to Tree Neighborhoods and Soil Properties Across Three Tropical Rainforests in Panama. MICROBIAL ECOLOGY 2020; 79:675-685. [PMID: 31654106 DOI: 10.1007/s00248-019-01446-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Accepted: 09/27/2019] [Indexed: 06/10/2023]
Abstract
Abiotic and biotic drivers of co-occurring fungal functional guilds across regional-scale environmental gradients remain poorly understood. We characterized fungal communities using Illumina sequencing from soil cores collected across three Neotropical rainforests in Panama that vary in soil properties and plant community composition. We classified each fungal OTU into different functional guilds, namely plant pathogens, saprotrophs, arbuscular mycorrhizal (AM), or ectomycorrhizal (ECM). We measured soil properties and nutrients within each core and determined the tree community composition and richness around each sampling core. Canonical correspondence analyses showed that soil pH and moisture were shared potential drivers of fungal communities for all guilds. However, partial the Mantel tests showed different strength of responses of fungal guilds to composition of trees and soils. Plant pathogens and saprotrophs were more strongly correlated with soil properties than with tree composition; ECM fungi showed a stronger correlation with tree composition than with soil properties; and AM fungi were correlated with soil properties, but not with trees. In conclusion, we show that co-occurring fungal guilds respond differently to abiotic and biotic environmental factors, depending on their ecological function. This highlights the joint role that abiotic and biotic factors play in determining composition of fungal communities, including those associated with plant hosts.
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Affiliation(s)
- Tyler Schappe
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA.
- Present address: Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.
| | - Felipe E Albornoz
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA
- Present address: School of Agriculture and Environment, The University of Western Australia, Crawley, WA, 6009, Australia
| | - Benjamin L Turner
- Smithsonian Tropical Research Institute, Balboa, Ancon, Republic of Panama
| | - F Andrew Jones
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA.
- Smithsonian Tropical Research Institute, Balboa, Ancon, Republic of Panama.
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14
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Sayer EJ, Rodtassana C, Sheldrake M, Bréchet LM, Ashford OS, Lopez-Sangil L, Kerdraon-Byrne D, Castro B, Turner BL, Wright SJ, Tanner EV. Revisiting nutrient cycling by litterfall—Insights from 15 years of litter manipulation in old-growth lowland tropical forest. ADV ECOL RES 2020. [DOI: 10.1016/bs.aecr.2020.01.002] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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15
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Rodtassana C, Tanner EVJ. Litter removal in a tropical rain forest reduces fine root biomass and production but litter addition has few effects. Ecology 2019; 99:735-742. [PMID: 29336482 DOI: 10.1002/ecy.2143] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/05/2017] [Revised: 10/26/2017] [Accepted: 12/06/2017] [Indexed: 11/11/2022]
Abstract
Many old-growth lowland tropical rain forests are potentially nutrient limited, and it has long been thought that many such forests maintain growth by recycling nutrients from decomposing litter. We investigated this by continuously removing (for 10 yr) freshly fallen litter from five (45 m × 45 m) plots, adding it to five other plots, there were five controls. From monthly measures over 1 yr we show that litter removal caused lower: fine root (≤2 mm diameter) standing mass, fine root standing length, fine root length production and fine root length survivorship. Litter addition did not significantly change fine root mass or length or production. Nutrient concentrations in fine roots in litter removal plots were lower than those in controls for nitrogen (N), calcium (Ca) and magnesium (Mg), concentrations in fine roots in litter addition plots were higher for N and Ca. Chronic litter removal has resulted in reduced forest growth due to lack of nutrients, probably nitrogen. Conversely, long-term litter addition has had fewer effects.
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Affiliation(s)
- C Rodtassana
- Department of Plant Sciences, University of Cambridge, Downing St., Cambridge, CB2 3EA, UK.,Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand
| | - E V J Tanner
- Department of Plant Sciences, University of Cambridge, Downing St., Cambridge, CB2 3EA, UK.,Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Panama
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16
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Bunn RA, Simpson DT, Bullington LS, Lekberg Y, Janos DP. Revisiting the 'direct mineral cycling' hypothesis: arbuscular mycorrhizal fungi colonize leaf litter, but why? THE ISME JOURNAL 2019; 13:1891-1898. [PMID: 30911130 PMCID: PMC6775977 DOI: 10.1038/s41396-019-0403-2] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/12/2018] [Revised: 02/08/2019] [Accepted: 03/01/2019] [Indexed: 12/16/2022]
Affiliation(s)
- Rebecca A Bunn
- Department of Environmental Sciences, Western Washington University, 516 High St., MS-9181, Bellingham, WA, 98225, USA.
| | - Dylan T Simpson
- Department of Environmental Sciences, Western Washington University, 516 High St., MS-9181, Bellingham, WA, 98225, USA
| | | | - Ylva Lekberg
- MPG Ranch, Missoula, MT, USA
- Department of Ecosystem and Conservation Sciences, University of Montana, Missoula, MT, USA
| | - David P Janos
- Department of Biology, University of Miami, Miami, FL, USA
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17
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Álvarez‐Lopeztello J, del Castillo RF, Robles C, Hernández‐Cuevas LV. Spore diversity of arbuscular mycorrhizal fungi in human‐modified neotropical ecosystems. Ecol Res 2019. [DOI: 10.1111/1440-1703.12004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
| | | | - Celerino Robles
- CIIDIR‐Oaxaca, Instituto Politécnico Nacional Santa Cruz Xoxocotlán Mexico
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18
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Sheldrake M, Rosenstock NP, Mangan S, Revillini D, Sayer EJ, Olsson PA, Verbruggen E, Tanner EVJ, Turner BL, Wright SJ. Responses of arbuscular mycorrhizal fungi to long-term inorganic and organic nutrient addition in a lowland tropical forest. THE ISME JOURNAL 2018; 12:2433-2445. [PMID: 29899509 PMCID: PMC6155082 DOI: 10.1038/s41396-018-0189-7] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2017] [Revised: 03/13/2018] [Accepted: 03/18/2018] [Indexed: 11/09/2022]
Abstract
Improved understanding of the nutritional ecology of arbuscular mycorrhizal (AM) fungi is important in understanding how tropical forests maintain high productivity on low-fertility soils. Relatively little is known about how AM fungi will respond to changes in nutrient inputs in tropical forests, which hampers our ability to assess how forest productivity will be influenced by anthropogenic change. Here we assessed the influence of long-term inorganic and organic nutrient additions and nutrient depletion on AM fungi, using two adjacent experiments in a lowland tropical forest in Panama. We characterised AM fungal communities in soil and roots using 454-pyrosequencing, and quantified AM fungal abundance using microscopy and a lipid biomarker. Phosphorus and nitrogen addition reduced the abundance of AM fungi to a similar extent, but affected community composition in different ways. Nutrient depletion (removal of leaf litter) had a pronounced effect on AM fungal community composition, affecting nearly as many OTUs as phosphorus addition. The addition of nutrients in organic form (leaf litter) had little effect on any AM fungal parameter. Soil AM fungal communities responded more strongly to changes in nutrient availability than communities in roots. This suggests that the 'dual niches' of AM fungi in soil versus roots are structured to different degrees by abiotic environmental filters, and biotic filters imposed by the plant host. Our findings indicate that AM fungal communities are fine-tuned to nutrient regimes, and support future studies aiming to link AM fungal community dynamics with ecosystem function.
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Affiliation(s)
- Merlin Sheldrake
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK.
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Republic of Panama.
| | | | - Scott Mangan
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Republic of Panama
- Department of Biology, Washington University in St. Louis, St. Louis, MO, 63130, USA
| | - Daniel Revillini
- Department of Biological Sciences, Northern Arizona University, PO BOX 5640, Flagstaff, AZ, 86011, USA
| | - Emma J Sayer
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Republic of Panama
- Lancaster Environment Centre, Lancaster University, Lancaster, LA1 4YQ, UK
| | | | - Erik Verbruggen
- Research Group Plants and Ecosystems (PLECO), Department of Biology, University of Antwerp, Wilrijk, Belgium
| | - Edmund V J Tanner
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK
| | - Benjamin L Turner
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Republic of Panama
| | - S Joseph Wright
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Republic of Panama
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Pereira CMR, da Silva DKA, Goto BT, Rosendahl S, Maia LC. Management practices may lead to loss of arbuscular mycorrhizal fungal diversity in protected areas of the Brazilian Atlantic Forest. FUNGAL ECOL 2018. [DOI: 10.1016/j.funeco.2018.05.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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20
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Microbial Diversity: The Gap between the Estimated and the Known. DIVERSITY-BASEL 2018. [DOI: 10.3390/d10020046] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Ma M, Ongena M, Wang Q, Guan D, Cao F, Jiang X, Li J. Chronic fertilization of 37 years alters the phylogenetic structure of soil arbuscular mycorrhizal fungi in Chinese Mollisols. AMB Express 2018; 8:57. [PMID: 29667106 PMCID: PMC5904092 DOI: 10.1186/s13568-018-0587-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Accepted: 04/05/2018] [Indexed: 11/10/2022] Open
Abstract
Arbuscular mycorrhizal fungi (AMF) play vital roles in sustaining soil productivity and plant communities. However, adaption and differentiation of AMF in response to commonly used fertilization remain poorly understood. In this study, we showed that the AMF community composition was primarily driven by soil physiochemical changes associated with chronic inorganic and organic fertilization of 37 years in Mollisols. High-throughput sequencing indicated that inorganic fertilizer negatively affected AMF diversity and richness, implying a reduction of mutualism in plant-AMF symbiosis; however, a reverse trend was observed for the application of inorganic fertilizer combined with manure. With regards to AMF community composition, order Glomerales was dominant, but varied significantly among different fertilization treatments. All fertilization treatments decreased family Glomeraceae and genus Funneliformis, while Rhizophagus abundance increased. Plant-growth-promoting-microorganisms of family Claroideoglomeraceae and genus Claroideoglomus were stimulated by manure application, and likely benefited pathogen suppression and phosphorus (P) acquisition. Family Gigasporaceae and genus Gigaspora were negatively correlated with available P in soil. Additionally, redundancy analysis further suggested that soil available P, organic matter and pH were the most important factors in shaping AMF community composition. These results provide strong evidence for niche differentiation of phylogenetically distinct AMF populations under different fertilization regimes. Manure likely contributes to restoration and maintenance of plant-AMF symbiosis, and the balanced fertilization would favor the growth of beneficial AMF communities as one optimized management in support of sustainable agriculture in Mollisols.
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Gora EM, Sayer EJ, Turner BL, Tanner EVJ. Decomposition of coarse woody debris in a long‐term litter manipulation experiment: A focus on nutrient availability. Funct Ecol 2018. [DOI: 10.1111/1365-2435.13047] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Emma J. Sayer
- Lancaster Environment Centre Lancaster University Lancaster UK
- Smithsonian Tropical Research Institute Balboa, Ancon Panama
- School of Environment, Earth and Ecosystems The Open University Milton Keynes UK
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Mycorrhizal fungi show regular community compositions in natural ecosystems. ISME JOURNAL 2017; 12:380-385. [PMID: 28984847 PMCID: PMC5776451 DOI: 10.1038/ismej.2017.169] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Revised: 08/28/2017] [Accepted: 09/04/2017] [Indexed: 11/08/2022]
Abstract
Dissimilarity overlap curve analysis has shown that 'universality' is a common feature in many complex microbial communities, suggesting that the same taxa interact in a similar manner when shared between communities. We present evidence that arbuscular mycorrhizal fungi, common plant root symbionts, show universal community compositions in natural ecosystems and that this pattern is conserved even at larger spatial scales. However, universality was not detected in agricultural ecosystems potentially implying that agricultural symbiont communities are formed in a different manner.
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