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Mora-Carrera E, Stubbs RL, Potente G, Yousefi N, Aeschbacher S, Keller B, Choudhury RR, Celep F, Kochjarová J, de Vos JM, Szövényi P, Conti E. Unveiling the Genome-Wide Consequences of Range Expansion and Mating System Transitions in Primula vulgaris. Genome Biol Evol 2024; 16:evae208. [PMID: 39340447 PMCID: PMC11469071 DOI: 10.1093/gbe/evae208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Revised: 09/16/2024] [Accepted: 09/23/2024] [Indexed: 09/30/2024] Open
Abstract
Genetic diversity is heterogeneously distributed among populations of the same species, due to the joint effects of multiple demographic processes, including range contractions and expansions, and mating systems shifts. Here, we ask how both processes shape genomic diversity in space and time in the classical Primula vulgaris model. This perennial herb originated in the Caucasus region and was hypothesized to have expanded westward following glacial retreat in the Quaternary. Moreover, this species is a long-standing model for mating system transitions, exemplified by shifts from heterostyly to homostyly. Leveraging a high-quality reference genome of the closely related Primula veris and whole-genome resequencing data from both heterostylous and homostylous individuals from populations encompassing a wide distribution of P. vulgaris, we reconstructed the demographic history of P. vulgaris. Results are compatible with the previously proposed hypothesis of range expansion from the Caucasus region approximately 79,000 years ago and suggest later shifts to homostyly following rather than preceding postglacial colonization of England. Furthermore, in accordance with population genetic theoretical predictions, both processes are associated with reduced genetic diversity, increased linkage disequilibrium, and reduced efficacy of purifying selection. A novel result concerns the contrasting effects of range expansion versus shift to homostyly on transposable elements, for the former, process is associated with changes in transposable element genomic content, while the latter is not. Jointly, our results elucidate how the interactions among range expansion, transitions to selfing, and Quaternary climatic oscillations shape plant evolution.
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Affiliation(s)
- Emiliano Mora-Carrera
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
| | - Rebecca L Stubbs
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
| | - Giacomo Potente
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
| | - Narjes Yousefi
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
| | - Simon Aeschbacher
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | - Barbara Keller
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
| | - Rimjhim Roy Choudhury
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
| | - Ferhat Celep
- Department of Biology, Faculty of Engineering and Natural Sciences, Kırıkkale University, Kırıkkale, Turkey
| | - Judita Kochjarová
- Department of Phytology, Faculty of Forestry, Technical University in Zvolen, Zvolen, Slovak Republic
| | - Jurriaan M de Vos
- Department of Environmental Sciences—Botany, University of Basel, Basel, Switzerland
| | - Peter Szövényi
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
| | - Elena Conti
- Department of Systematic and Evolutionary Botany, University of Zurich, Zurich, Switzerland
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2
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Sun HY, Zhang WP, Zhou W, Wu ZK, Zheng LP. Development of polymorphic microsatellite markers for distylous-homostylous Primula secundiflora (Primulaceae) using HiSeq sequencing. Genes Genet Syst 2024; 99:n/a. [PMID: 38556272 DOI: 10.1266/ggs.23-00340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/02/2024] Open
Abstract
Primula secundiflora is an insect-pollinated, perennial herb belonging to the section Proliferae (Primulaceae) that exhibits considerable variation in its mating system, with predominantly outcrossing populations comprising long-styled and short-styled floral morphs and selfing populations comprising only homostyles. To facilitate future investigations of the population genetics and mating patterns of this species, we developed 25 microsatellite markers from P. secundiflora using next-generation sequencing and measured polymorphism and genetic diversity in a sample of 30 individuals from three natural populations. The markers displayed high polymorphism, with the number of observed alleles per locus ranging from three to 16 (mean = 8.36). The observed and expected heterozygosities ranged from 0.100 to 1.000 and 0.145 to 0.843, respectively. Twenty-one of the loci were also successfully amplified in P. denticulata. These microsatellite markers should provide powerful tools for investigating patterns of population genetic diversity and the evolutionary relationships between distyly and homostyly in P. secundiflora.
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Affiliation(s)
- Hua-Ying Sun
- College of Chinese Materia Medica, Yunnan University of Chinese Medicine
- Germplasm Bank of Wild Species and Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences
- Key Laboratory of Yunnan Provincial Department of Education for Processing Research on Characteristic Prepared Drug in Pieces
| | - Wen-Ping Zhang
- College of Chinese Materia Medica, Yunnan University of Chinese Medicine
| | - Wei Zhou
- Germplasm Bank of Wild Species and Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences
| | - Zhi-Kun Wu
- Department of Pharmacy, Guizhou University of Traditional Chinese Medicine
| | - Lan-Ping Zheng
- College of Chinese Materia Medica, Yunnan University of Chinese Medicine
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3
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Zeng ZH, Zhong L, Sun HY, Wu ZK, Wang X, Wang H, Li DZ, Barrett SCH, Zhou W. Parallel evolution of morphological and genomic selfing syndromes accompany the breakdown of heterostyly. THE NEW PHYTOLOGIST 2024; 242:302-316. [PMID: 38214455 DOI: 10.1111/nph.19522] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 12/18/2023] [Indexed: 01/13/2024]
Abstract
Evolutionary transitions from outcrossing to selfing in flowering plants have convergent morphological and genomic signatures and can involve parallel evolution within related lineages. Adaptive evolution of morphological traits is often assumed to evolve faster than nonadaptive features of the genomic selfing syndrome. We investigated phenotypic and genomic changes associated with transitions from distyly to homostyly in the Primula oreodoxa complex. We determined whether the transition to selfing occurred more than once and investigated stages in the evolution of morphological and genomic selfing syndromes using 22 floral traits and both nuclear and plastid genomic data from 25 populations. Two independent transitions were detected representing an earlier and a more recently derived selfing lineage. The older lineage exhibited classic features of the morphological and genomic selfing syndrome. Although features of both selfing syndromes were less developed in the younger selfing lineage, they exhibited parallel development with the older selfing lineage. This finding contrasts with the prediction that some genomic changes should lag behind adaptive changes to morphological traits. Our findings highlight the value of comparative studies on the timing and extent of transitions from outcrossing to selfing between related lineages for investigating the tempo of morphological and molecular evolution.
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Affiliation(s)
- Zhi-Hua Zeng
- Germplasm Bank of Wild Species, Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Li Zhong
- Germplasm Bank of Wild Species, Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Hua-Ying Sun
- School of Chinese Materia Medica, Yunnan University of Chinese Medicine, Kunming, Yunnan, 650500, China
| | - Zhi-Kun Wu
- Department of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang, Guizhou, 550002, China
| | - Xin Wang
- Germplasm Bank of Wild Species, Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China
| | - Hong Wang
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China
| | - De-Zhu Li
- Germplasm Bank of Wild Species, Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China
| | - Spencer C H Barrett
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, M5S 3B2, Canada
| | - Wei Zhou
- Germplasm Bank of Wild Species, Yunnan Key Laboratory of Crop Wild Relatives Omics, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China
- Lijiang Forest Biodiversity National Observation and Research Station, Kunming Institute of Botany, Chinese Academy of Sciences, Lijiang, Yunnan, 674100, China
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4
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Scharman M, Lenhard M. Heterostyly. Curr Biol 2024; 34:R181-R183. [PMID: 38471441 DOI: 10.1016/j.cub.2024.01.072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2024]
Abstract
Scharman and Lenhard introduce heterostyly, a phenomenon where individuals in a plant population produce flowers with more than one morphologically distinct form.
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Affiliation(s)
- Mathias Scharman
- Institute for Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Str. 24-25, D-14476 Potsdam-Golm, Germany
| | - Michael Lenhard
- Institute for Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Str. 24-25, D-14476 Potsdam-Golm, Germany.
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Mora‐Carrera E, Stubbs RL, Potente G, Yousefi N, Keller B, de Vos JM, Szövényi P, Conti E. Genomic analyses elucidate S-locus evolution in response to intra-specific losses of distyly in Primula vulgaris. Ecol Evol 2024; 14:e10940. [PMID: 38516570 PMCID: PMC10955462 DOI: 10.1002/ece3.10940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 12/02/2023] [Accepted: 01/03/2024] [Indexed: 03/23/2024] Open
Abstract
Distyly, a floral dimorphism that promotes outcrossing, is controlled by a hemizygous genomic region known as the S-locus. Disruptions of genes within the S-locus are responsible for the loss of distyly and the emergence of homostyly, a floral monomorphism that favors selfing. Using whole-genome resequencing data of distylous and homostylous individuals from populations of Primula vulgaris and leveraging high-quality reference genomes of Primula we tested, for the first time, predictions about the evolutionary consequences of transitions to selfing on S-genes. Our results reveal a previously undetected structural rearrangement in CYPᵀ associated with the shift to homostyly and confirm previously reported, homostyle-specific, loss-of-function mutations in the exons of the S-gene CYPᵀ. We also discovered that the promoter and intronic regions of CYPᵀ in distylous and homostylous individuals are conserved, suggesting that down-regulation of CYPᵀ via mutations in its promoter and intronic regions is not a cause of the shift to homostyly. Furthermore, we found that hemizygosity is associated with reduced genetic diversity in S-genes compared with their paralogs outside the S-locus. Additionally, the shift to homostyly lowers genetic diversity in both the S-genes and their paralogs, as expected in primarily selfing plants. Finally, we tested, for the first time, long-standing theoretical models of changes in S-locus genotypes during early stages of the transition to homostyly, supporting the assumption that two copies of the S-locus might reduce homostyle fitness.
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Affiliation(s)
- E. Mora‐Carrera
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - R. L. Stubbs
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - G. Potente
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - N. Yousefi
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - B. Keller
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - J. M. de Vos
- Department of Environmental Sciences – BotanyUniversity of BaselBaselSwitzerland
| | - P. Szövényi
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - E. Conti
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
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6
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Ren D, Jiao F, Zhang A, Zhao J, Zhang J. Floral morph variation mediated by clonal growth and pollinator functional groups of Limonium otolepis in a heterostylous fragmented population. AOB PLANTS 2024; 16:plae020. [PMID: 38660050 PMCID: PMC11041057 DOI: 10.1093/aobpla/plae020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 03/26/2024] [Indexed: 04/26/2024]
Abstract
Abstract. Heterostyly, a genetic style polymorphism, is linked to symmetric pollen transfer, vital for its maintenance. Clonal growth typically impacts sexual reproduction by influencing pollen transfer. However, the floral morph variation remains poorly understood under the combined effects of pollinators and clonal growth in heterostyly characterized by negative frequency-dependent selection and disassortative mating. We estimated morph ratios, ramets per genet and heterostylous syndrome and quantified legitimate pollen transfer via clonal growth, pollinators and reciprocal herkogamy between floral morphs in Limonium otolepis, a fragmented population composed of five subpopulations in the desert environment of northwestern China, with small flower and large floral morph variation. All subpopulations but one exhibited pollen-stigma morphology dimorphism. The compatibility between mating types with different pollen-stigma morphologies remained consistent regardless of reciprocal herkogamy. Biased ratios and ramets per genet of the two mating types with distinct pollen-stigma morphologies caused asymmetric pollen flow and varying fruit sets in all subpopulations. Short-tongued insects were the primary pollinators due to small flower sizes. However, pollen-feeding Syrphidae sp. triggered asymmetry in pollen flow between high and low sex organs, with short-styled morphs having lower stigma pollen depositions and greater variation. Clonal growth amplified this variation by reducing intermorph pollen transfer. All in all, pollinators and clonal growth jointly drive floral morph variation. H-morphs with the same stigma-anther position and self-incompatibility, which mitigate the disadvantages of sunken low sex organs with differing from the classical homostyly, might arise from long- and short-styled morphs through a 'relaxed selection'. This study is the first to uncover the occurrence of the H-morph and its associated influencing factors in a distylous plant featuring clonal growth, small flowers and a fragmented population.
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Affiliation(s)
- Dengfu Ren
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, School of Life Science and Technology, Xinjiang University, Urumqi 830017, P.R China
| | - Fangfang Jiao
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, School of Life Science and Technology, Xinjiang University, Urumqi 830017, P.R China
| | - Aiqin Zhang
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, School of Life Science and Technology, Xinjiang University, Urumqi 830017, P.R China
| | - Jing Zhao
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, School of Life Science and Technology, Xinjiang University, Urumqi 830017, P.R China
| | - Jing Zhang
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, School of Life Science and Technology, Xinjiang University, Urumqi 830017, P.R China
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7
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Jia Y, Liu C, Li Y, Xiang Y, Pan Y, Liu Q, Gao S, Yin X, Wang Z. Inheritance of distyly and homostyly in self-incompatible Primula forbesii. Heredity (Edinb) 2023; 130:259-268. [PMID: 36788365 PMCID: PMC10076296 DOI: 10.1038/s41437-023-00598-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 02/02/2023] [Accepted: 02/02/2023] [Indexed: 02/16/2023] Open
Abstract
The evolutionary transition from self-incompatible distyly to self-compatible homostyly frequently occurs in heterostylous taxa. Although the inheritance of distyly and homostyly has been deeply studied, our understanding on modifications of the classical simple Mendelian model is still lacking. Primula forbesii, a biennial herb native to southwest China, is a typical distylous species, but after about 20 years of cultivation with open pollination, self-compatible homostyly appeared, providing ideal material for the study of the inheritance of distyly and homostyly. In this study, exogenous homobrassinolide was used to break the heteromorphic incompatibility of P. forbesii. Furthermore, we performed artificial pollination and open-pollination experiments to observe the distribution of floral morphs in progeny produced by different crosses. The viability of seeds from self-pollination was always the lowest among all crosses, and the homozygous S-morph plants (S/S) occurred in artificial pollination experiments but may experience viability selection. The distyly of P. forbesii is governed by a single S-locus, with S-morph dominant hemizygotes (S/-) and L-morph recessive homozygotes (-/-). Homostylous plants have a genotype similar to L-morph plants, and homostyly may be caused by one or more unlinked modifier genes outside the S-locus. Open pollinations confirm that autonomous self-pollination occurs frequently in L-morphs and homostylous plants. This study deepens the understanding of the inheritance of distyly and details a case of homostyly that likely originated from one or more modifier genes.
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Affiliation(s)
- Yin Jia
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China.
| | - Cailei Liu
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Yifeng Li
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Yuanfen Xiang
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Yuanzhi Pan
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Qinglin Liu
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Suping Gao
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Xiancai Yin
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Zexun Wang
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
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8
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Wu ZK, Guo YJ, Zhang T, Burgess KS, Zhou W. Primula luquanensis sp. nov. (Primulaceae), a New Species from Southwestern China, Reveals a Novel Floral Form in the Heterostyly-Prevailing Genus. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12030534. [PMID: 36771618 PMCID: PMC9918951 DOI: 10.3390/plants12030534] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Revised: 01/09/2023] [Accepted: 01/11/2023] [Indexed: 06/01/2023]
Abstract
A new species, Primula luquanensis Z.K.Wu and Wei Zhou sp. nov. (Primulaceae) is described and illustrated from Yunnan Province, China. It is morphologically assigned to P. sect Aleuritia based on its dwarf and hairless habit and coverage by farina on both sides of the leaf blade and scape. This new species is similar to P. nutantiflora and P. yunnanensis, but it is easily distinguished by its stolons, solitary bract, bell-shaped corolla and monomorphic floral form. The new species also has a substantially reduced corolla tube, presenting a unique floral form in a genus where heterostyly typically prevails.
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Affiliation(s)
- Zhi-Kun Wu
- Department of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang 550025, China
| | - Yong-Jie Guo
- Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | - Ting Zhang
- Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
| | - Kevin S. Burgess
- Department of Biology, College of Letters and Sciences, Columbus State University, University System of Georgia, Columbus, GA 31907–5645, USA
| | - Wei Zhou
- Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China
- Lijiang Forest Biodiversity National Observation and Research Station, Kunming Institute of Botany, Chinese Academy of Sciences, Lijiang 674100, China
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9
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Zhao Z, Zhang Y, Shi M, Liu Z, Xu Y, Luo Z, Yuan S, Tu T, Sun Z, Zhang D, Barrett SCH. Genomic evidence supports the genetic convergence of a supergene controlling the distylous floral syndrome. THE NEW PHYTOLOGIST 2023; 237:601-614. [PMID: 36239093 DOI: 10.1111/nph.18540] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 09/30/2022] [Indexed: 06/16/2023]
Abstract
Heterostyly, a plant sexual polymorphism controlled by the S-locus supergene, has evolved numerous times among angiosperm lineages and represents a classic example of convergent evolution in form and function. Determining whether underlying molecular convergence occurs could provide insights on constraints to floral evolution. Here, we investigated S-locus genes in distylous Gelsemium (Gelsemiaceae) to determine whether there is evidence of molecular convergence with unrelated distylous species. We used several approaches, including anatomical measurements of sex-organ development and transcriptome and whole-genome sequencing, to identify components of the S-locus supergene. We also performed evolutionary analysis with candidate S-locus genes and compared them with those reported in Primula and Turnera. The candidate S-locus supergene of Gelsemium contained four genes, of which three appear to have originated from gene duplication events within Gelsemiaceae. The style-length genes GeCYP in Gelsemium and CYP734A50 in Primula likely arose from duplication of the same gene, CYP734A1. Three out of four S-locus genes in Gelsemium elegans were hemizygous, as previously reported in Primula and Turnera. We provide genomic evidence on the genetic convergence of the supergene underlying distyly among distantly related angiosperm lineages and help to illuminate the genetic architecture involved in the evolution of heterostyly.
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Affiliation(s)
- Zhongtao Zhao
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- College of Life Sciences, Gannan Normal University, Ganzhou, 34100, China
| | - Yu Zhang
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Miaomiao Shi
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Zhaoying Liu
- Hunan Engineering Technology Research Center of Veterinary Drugs, Hunan Agricultural University, Changsha, 410128, China
| | - Yuanqing Xu
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Zhonglai Luo
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Shuai Yuan
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Tieyao Tu
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Zhiliang Sun
- Hunan Engineering Technology Research Center of Veterinary Drugs, Hunan Agricultural University, Changsha, 410128, China
| | - Dianxiang Zhang
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- College of Life Sciences, Gannan Normal University, Ganzhou, 34100, China
| | - Spencer C H Barrett
- Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcocks St., Toronto, ON, M5S 3B2, Canada
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10
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Mora‐Carrera E, Stubbs RL, Keller B, Léveillé‐Bourret É, de Vos JM, Szövényi P, Conti E. Different molecular changes underlie the same phenotypic transition: Origins and consequences of independent shifts to homostyly within species. Mol Ecol 2023; 32:61-78. [PMID: 34761469 PMCID: PMC10078681 DOI: 10.1111/mec.16270] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 10/29/2021] [Accepted: 11/02/2021] [Indexed: 12/29/2022]
Abstract
The repeated transition from outcrossing to selfing is a key topic in evolutionary biology. However, the molecular basis of such shifts has been rarely examined due to lack of knowledge of the genes controlling these transitions. A classic example of mating system transition is the repeated shift from heterostyly to homostyly. Occurring in 28 angiosperm families, heterostyly is characterized by the reciprocal position of male and female sexual organs in two (or three) distinct, usually self-incompatible floral morphs. Conversely, homostyly is characterized by a single, self-compatible floral morph with reduced separation of male and female organs, facilitating selfing. Here, we investigate the origins of homostyly in Primula vulgaris and its microevolutionary consequences by integrating surveys of the frequency of homostyles in natural populations, DNA sequence analyses of the gene controlling the position of female sexual organs (CYPᵀ), and microsatellite genotyping of both progeny arrays and natural populations characterized by varying frequencies of homostyles. As expected, we found that homostyles displace short-styled individuals, but long-style morphs are maintained at low frequencies within populations. We also demonstrated that homostyles repeatedly evolved from short-styled individuals in association with different types of loss-of-function mutations in CYPᵀ. Additionally, homostyly triggers a shift to selfing, promoting increased inbreeding within and genetic differentiation among populations. Our results elucidate the causes and consequences of repeated transitions to homostyly within species, and the putative mechanisms precluding its fixation in P. vulgaris. This study represents a benchmark for future analyses of losses of heterostyly in other angiosperms.
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Affiliation(s)
- Emiliano Mora‐Carrera
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - Rebecca L. Stubbs
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - Barbara Keller
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - Étienne Léveillé‐Bourret
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
- Département de Sciences BiologiquesInstitut de Recherche en Biologie VégétaleUniversité de MontréalMontréalQuébecCanada
| | - Jurriaan M. de Vos
- Department of Environmental Sciences – BotanyUniversity of BaselBaselSwitzerland
| | - Peter Szövényi
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - Elena Conti
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
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11
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Liu C, Jia Y, Li Y, Xiang Y, Pan Y, Liu Q, Ma K, Yin X. The rapid appearance of homostyly in a cultivated distylous population of Primula forbesii. Ecol Evol 2022; 12:e9515. [PMID: 36415874 PMCID: PMC9674475 DOI: 10.1002/ece3.9515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Revised: 10/22/2022] [Accepted: 10/26/2022] [Indexed: 11/20/2022] Open
Abstract
Evolutionary breakdown from rigorous outbreeding to self-fertilization frequently occurs in angiosperms. Since the pollinators are not necessary, self-compatible populations often reduce investment in floral display characteristics and pollination reward. Primula forbesii is a biennial herb with distribution restricted to southwest China; it was initially a self-incompatible distylous species, but after 20 years of artificial domestication, homostyly appeared. This change in style provides an ideal material to explore the time required for plant mating systems to adapt to new environmental changes and test whether flower attraction has reduced following transitions to selfing. We did a survey in wild populations of P. forbesii where its seeds were originally collected 20 years ago and recorded the floral morph frequencies and morphologies. The floral morphologies, self-incompatibility, floral scent, and pollinator visitation between distyly and homostyly were compared in greenhouse. Floral morph frequencies of wild populations did not change, while the cultivated population was inclined to L-morph and produced homostyly. Evidence from stigma papillae and pollen size supports the hypothesis that the homostyly possibly originated from mutations of large effect genes in distylous linkage region. Transitions to self-compatible homostyly are accompanied by smaller corolla size, lower amounts of terpenoids, especially linalool and higher amounts of fatty acid derivatives. The main pollinators in the greenhouse were short-tongued Apis cerana. However, homostyly had reduced visiting frequency. The mating system of P. forbesii changed rapidly in just about 20 years of domestication, and our findings confirm the hypothesis that the transition to selfing is accompanied by decreased flower attraction.
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Affiliation(s)
- Cai‐Lei Liu
- College of Landscape ArchitectureSichuan Agricultural UniversityChengduChina
| | - Yin Jia
- College of Landscape ArchitectureSichuan Agricultural UniversityChengduChina
| | - Yi‐Feng Li
- College of Landscape ArchitectureSichuan Agricultural UniversityChengduChina
| | - Yuan‐Fen Xiang
- College of Landscape ArchitectureSichuan Agricultural UniversityChengduChina
| | - Yuan‐Zhi Pan
- College of Landscape ArchitectureSichuan Agricultural UniversityChengduChina
| | - Qing‐Lin Liu
- College of Landscape ArchitectureSichuan Agricultural UniversityChengduChina
| | - Ke‐Hang Ma
- College of Landscape ArchitectureSichuan Agricultural UniversityChengduChina
| | - Xian‐Cai Yin
- College of Landscape ArchitectureSichuan Agricultural UniversityChengduChina
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12
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Zhang W, Hu YF, He X, Zhou W, Shao JW. Evolution of Autonomous Selfing in Marginal Habitats: Spatiotemporal Variation in the Floral Traits of the Distylous Primula wannanensis. FRONTIERS IN PLANT SCIENCE 2021; 12:781281. [PMID: 34975966 PMCID: PMC8716950 DOI: 10.3389/fpls.2021.781281] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Accepted: 11/09/2021] [Indexed: 06/08/2023]
Abstract
Outcrossing plant species are more likely to exhibit autonomous selfing in marginal habitats to ensure reproduction under conditions of limited pollinator and/or mate availability. Distyly is a classical paradigm that promotes outcrossing; however, little is known about the variation in floral traits associated with distylous syndrome in marginal populations. In this study, we compared the variation in floral traits including stigma and anther height, corolla tube length, herkogamy, and corolla diameter between the central and peripheral populations of the distylous Primula wannanensis, and assessed the variation of floral traits at early and late florescence stages for each population. To evaluate the potential consequences of the variation in floral traits on the mating system, we investigated seed set in each population under both open-pollinated and pollinator-excluded conditions. The flower size of both short- and long-styled morphs was significantly reduced in late-opening flowers compared with early opening flowers in both central and peripheral populations. Sex-organ reciprocity was perfect in early opening flowers; however, it was largely weakened in the late-opening flowers of peripheral populations compared with central populations. Of these flowers, disproportionate change in stigma height (elongated in S-morph and shortened in L-morph) was the main cause of reduced herkogamy, and seed set was fairly high under pollinator-excluded condition. Our results provide empirical support for the hypothesis on the evolution of delayed autonomous selfing in marginal populations of distylous species. Unsatisfactory pollinator service is likely to have promoted reproductive assurance of distylous plants with largely reduced herkogamy mimicking "homostyles."
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Affiliation(s)
- Wei Zhang
- College of Life Sciences, Anhui Normal University, Wuhu, China
- Provincial Key Laboratory of Conservation and Utilization of Biological Resources, Wuhu, China
| | - Ying Feng Hu
- College of Life Sciences, Anhui Normal University, Wuhu, China
| | - Xiao He
- College of Life Sciences, Anhui Normal University, Wuhu, China
| | - Wei Zhou
- Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China
- Lijiang Forest Biodiversity National Observation and Research Station, Kunming Institute of Botany, Chinese Academy of Sciences, Lijiang, China
| | - Jian Wen Shao
- College of Life Sciences, Anhui Normal University, Wuhu, China
- Provincial Key Laboratory of Conservation and Utilization of Biological Resources, Wuhu, China
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13
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Huu CN, Plaschil S, Himmelbach A, Kappel C, Lenhard M. Female self-incompatibility type in heterostylous Primula is determined by the brassinosteroid-inactivating cytochrome P450 CYP734A50. Curr Biol 2021; 32:671-676.e5. [PMID: 34906354 DOI: 10.1016/j.cub.2021.11.046] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 10/15/2021] [Accepted: 11/17/2021] [Indexed: 10/19/2022]
Abstract
Most flowering plants are hermaphrodites, with flowers having both male and female reproductive organs. One widespread adaptation to limit self-fertilization is self-incompatibility (SI), where self-pollen fails to fertilize ovules.1,2 In homomorphic SI, many morphologically indistinguishable mating types are found, although in heteromorphic SI, the two or three mating types are associated with different floral morphologies.3-6 In heterostylous Primula, a hemizygous supergene determines a short-styled S-morph and a long-styled L-morph, corresponding to two different mating types, and full seed set only results from intermorph crosses.7-9 Style length is controlled by the brassinosteroid (BR)-inactivating cytochrome P450 CYP734A50,10 yet it remains unclear what defines the male and female incompatibility types. Here, we show that CYP734A50 also determines the female incompatibility type. Inactivating CYP734A50 converts short S-morph styles into long styles with the same incompatibility behavior as L-morph styles, and this effect can be mimicked by exogenous BR treatment. In vitro responses of S- and L-morph pollen grains and pollen tubes to increasing BR levels could only partly explain their different in vivo behavior, suggesting both direct and indirect effects of the different BR levels in S- versus L-morph stigmas and styles in controlling pollen performance. This BR-mediated SI provides a novel mechanism for preventing self-fertilization. The joint control of morphology and SI by CYP734A50 has important implications for the evolutionary buildup of the heterostylous syndrome and provides a straightforward explanation for why essentially all of the derived self-compatible homostylous Primula species are long homostyles.11.
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Affiliation(s)
- Cuong Nguyen Huu
- University of Potsdam, Institute for Biochemistry and Biology, Karl-Liebknecht-Str. 24-25, 14476 Potsdam-Golm, Germany
| | - Sylvia Plaschil
- Julius Kühn-Institut (JKI) - Federal Research Centre for Cultivated Plants, Institute for Breeding Research on Horticultural Crops, Erwin-Baur-Str. 27, 06484 Quedlinburg, Germany
| | - Axel Himmelbach
- Leibniz Institute of Plant Genetics and Crop Plant Research, OT Gatersleben, Corrensstrasse 3, 06466 Stadt Seeland, Germany
| | - Christian Kappel
- University of Potsdam, Institute for Biochemistry and Biology, Karl-Liebknecht-Str. 24-25, 14476 Potsdam-Golm, Germany
| | - Michael Lenhard
- University of Potsdam, Institute for Biochemistry and Biology, Karl-Liebknecht-Str. 24-25, 14476 Potsdam-Golm, Germany.
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14
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Wang XJ, Barrett SCH, Zhong L, Wu ZK, Li DZ, Wang H, Zhou W. The Genomic Selfing Syndrome Accompanies the Evolutionary Breakdown of Heterostyly. Mol Biol Evol 2021; 38:168-180. [PMID: 32761213 PMCID: PMC7782863 DOI: 10.1093/molbev/msaa199] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
The evolutionary transition from outcrossing to selfing can have important genomic consequences. Decreased effective population size and the reduced efficacy of selection are predicted to play an important role in the molecular evolution of the genomes of selfing species. We investigated evidence for molecular signatures of the genomic selfing syndrome using 66 species of Primula including distylous (outcrossing) and derived homostylous (selfing) taxa. We complemented our comparative analysis with a microevolutionary study of P. chungensis, which is polymorphic for mating system and consists of both distylous and homostylous populations. We generated chloroplast and nuclear genomic data sets for distylous, homostylous, and distylous–homostylous species and identified patterns of nonsynonymous to synonymous divergence (dN/dS) and polymorphism (πN/πS) in species or lineages with contrasting mating systems. Our analysis of coding sequence divergence and polymorphism detected strongly reduced genetic diversity and heterozygosity, decreased efficacy of purifying selection, purging of large-effect deleterious mutations, and lower rates of adaptive evolution in samples from homostylous compared with distylous populations, consistent with theoretical expectations of the genomic selfing syndrome. Our results demonstrate that self-fertilization is a major driver of molecular evolutionary processes with genomic signatures of selfing evident in both old and relatively young homostylous populations.
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Affiliation(s)
- Xin-Jia Wang
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.,Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Spencer C H Barrett
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada
| | - Li Zhong
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Zhi-Kun Wu
- Department of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang, Guizhou, China
| | - De-Zhu Li
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.,Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Hong Wang
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
| | - Wei Zhou
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China.,Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
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15
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Cao HP, He YT, Zhong L, Wang XJ, Barrett SCH, Wang H, Li DZ, Zhou W. Characterization of 30 microsatellite markers for distylous Primula denticulata (Primulaceae) using HiSeq sequencing. Genes Genet Syst 2020; 95:275-279. [PMID: 33328391 DOI: 10.1266/ggs.20-00003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Primula denticulata exhibits considerable variation in floral morphology and flowering phenology along elevational gradients in SW China. We isolated 30 microsatellite markers from P. denticulata to facilitate further investigation of population genetics and floral evolution in this species. We used the HiSeq X-Ten sequencing system to develop a set of markers, and measured polymorphism and genetic diversity in a sample of 72 individuals from three natural populations of P. denticulata subsp. denticulata. The markers displayed relatively high polymorphism, with the number of alleles ranging from two to seven (mean = 3.567). The observed and expected heterozygosity ranged from 0 to 1.000 and 0.041 to 0.702, respectively. Twenty-eight of the loci were also successfully amplified in P. denticulata subsp. sinodenticulata. The microsatellite markers we have identified will provide valuable tools for investigations of the population genetic structure, mating systems and phylogeography of the P. denticulata complex, and will help to address questions concerning the ecological and genetic mechanisms responsible for the evolution of reproductive traits in the species.
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Affiliation(s)
- Hao-Pu Cao
- Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences.,School of Life Science, Yunnan University
| | - Yu-Ting He
- Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences.,University of Chinese Academy of Sciences
| | - Li Zhong
- University of Chinese Academy of Sciences.,Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences
| | - Xin-Jia Wang
- University of Chinese Academy of Sciences.,Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences
| | | | - Hong Wang
- Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences
| | - De-Zhu Li
- Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences
| | - Wei Zhou
- Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences
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16
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Matias R, Pérez-Barrales R, Consolaro H. Patterns of variation in distylous traits and reproductive consequences in Erythroxylum species and populations. AMERICAN JOURNAL OF BOTANY 2020; 107:910-922. [PMID: 32462680 DOI: 10.1002/ajb2.1478] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Accepted: 03/16/2020] [Indexed: 06/11/2023]
Abstract
PREMISE Distylous species possess two floral morphs with reciprocal positioning of stigmas and anthers that is hypothesized to promote disassortative pollination. Theoretical models predict equal morph frequencies, but many populations depart from the expected 1:1 ratio, a pattern that often correlates with asymmetric mating between morphs and/or presence of a weak incompatibility system. Variation in reciprocity can also affect the likelihood of disassortative pollination and, hence, reproductive fitness. METHODS We described variation in incompatibility systems and morph ratio in four Erythroxylum species to test if greater deviations from 1:1 ratios occur in populations of self-compatible species. Using adaptive inaccuracy, we described upper and lower organ reciprocity in species and populations and assessed the relationship of reciprocity to population means and coefficients of variation for fruit set to test if reciprocity could predict female reproductive success. RESULTS Morphs occurred in 1:1 ratios in most populations of three Erythroxylum species with distylous self-incompatibility. In self-compatible E. campestre populations showed an excess of the long-styled morph, the short-styled morph, or were monomorphic for the short-styled morph. We detected deviations from reciprocity, with total inaccuracy ranging between 9.39% and 42.94%, and inaccuracy values were lowest in low organs. Across populations, we found a positive relationship between inaccuracy and the coefficient of variation of fruit set. CONCLUSIONS Erythroxylum species showed variation in the distylous syndrome, with changes in the incompatibility system that corresponded with deviations from 1:1 morph ratio, and variation in reciprocity that correlated with variation in female reproductive fitness.
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Affiliation(s)
- Raphael Matias
- Graduate Program in Botany, University of Brasília, Brasília, Distrito Federal, Brazil
- Academic Areas Department, Federal Institute of Goiás, Águas Lindas, Goiás, Brazil
| | | | - Hélder Consolaro
- Biotechnology Institute, Federal University of Catalão, Catalão, Goiás, Brazil
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17
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Barrett SCH. 'A most complex marriage arrangement': recent advances on heterostyly and unresolved questions. THE NEW PHYTOLOGIST 2019; 224:1051-1067. [PMID: 31631362 DOI: 10.1111/nph.16026] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Accepted: 05/23/2019] [Indexed: 05/09/2023]
Abstract
Heterostylous genetic polymorphisms provide paradigmatic systems for investigating adaptation and natural selection. Populations are usually comprised of two (distyly) or three (tristyly) mating types, maintained by negative frequency-dependent selection resulting from disassortative mating. Theory predicts this mating system should result in equal style-morph ratios (isoplethy) at equilibrium. Here, I review recent advances on heterostyly, focusing on examples challenging stereotypical depictions of the polymorphism and unresolved questions. Comparative analyses indicate multiple origins of heterostyly, often within lineages. Ecological studies demonstrate that structural components of heterostyly are adaptations improving the proficiency of animal-mediated cross-pollination and reducing pollen wastage. Both neutral and selective processes cause deviations from isoplethy in heterostylous populations, and, under some ecological and demographic conditions, cause breakdown of the polymorphism, resulting in either the evolution of autogamy and mixed mating, or transitions to alternative outcrossing systems, including dioecy. Earlier ideas on the genetic architecture of the S-locus supergene governing distyly have recently been overturned by discovery that the dominant S-haplotype is a hemizygous region absent from the s-haplotype. Ecological, phylogenetic and molecular genetic data have validated some features of theoretical models on the selection of the polymorphism. Although heterostyly is the best-understood floral polymorphism in angiosperms, many unanswered questions remain.
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Affiliation(s)
- Spencer C H Barrett
- Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcocks Street, Toronto, M5S 3B2, Canada
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18
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Zhong L, Barrett SCH, Wang XJ, Wu ZK, Sun HY, Li DZ, Wang H, Zhou W. Phylogenomic analysis reveals multiple evolutionary origins of selfing from outcrossing in a lineage of heterostylous plants. THE NEW PHYTOLOGIST 2019; 224:1290-1303. [PMID: 31077611 DOI: 10.1111/nph.15905] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Accepted: 05/01/2019] [Indexed: 06/09/2023]
Abstract
Evolutionary transitions from outcrossing to selfing often occur in heterostylous plants. Selfing homostyles originate within distylous populations and frequently evolve to become reproductively isolated species. We investigated this process in 10 species of Primula section Obconicolisteri using phylogenomic approaches and inferred how often homostyly originated from distyly and its consequences for population genetic diversity and floral trait evolution. We estimated phylogenetic relationships and reconstructed character evolution using the whole plastome comprised of 76 protein-coding genes. To investigate mating patterns and genetic diversity we screened 15 microsatellite loci in 40 populations. We compared floral traits among distylous and homostylous populations to determine how phenotypically differentiated homostyles were from their distylous ancestors. Section Obconicolisteri was monophyletic and we estimated multiple independent transitions from distyly to homostyly. High selfing rates characterised homostylous populations and this was associated with reduced genetic diversity. Flower size and pollen production were reduced in homostylous populations, but pollen size was significantly larger in some homostyles than in distylous morphs. Repeated transitions to selfing in section Obconicolisteri are likely to have been fostered by the complex montane environments that species occupy. Unsatisfactory pollinator service is likely to have promoted reproductive assurance in homostyles leading to subsequent population divergence through isolation.
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Affiliation(s)
- Li Zhong
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming, Yunnan, 650201, China
- University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing, 100049, China
| | - Spencer C H Barrett
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario, M5S 3B2, Canada
| | - Xin-Jia Wang
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming, Yunnan, 650201, China
- University of Chinese Academy of Sciences, 19 Yuquan Road, Beijing, 100049, China
| | - Zhi-Kun Wu
- Department of Pharmacy, Guiyang University of Traditional Chinese Medicine, Guiyang, Guizhou, 550002, China
| | - Hua-Ying Sun
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming, Yunnan, 650201, China
| | - De-Zhu Li
- Plant Germplasm and Genomics Centre, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming, Yunnan, 650201, China
| | - Hong Wang
- CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming, Yunnan, 650201, China
| | - Wei Zhou
- Plant Germplasm and Genomics Centre, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming, Yunnan, 650201, China
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19
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Global transcriptome and gene co-expression network analyses on the development of distyly in Primula oreodoxa. Heredity (Edinb) 2019; 123:784-794. [PMID: 31308492 DOI: 10.1038/s41437-019-0250-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Revised: 06/27/2019] [Accepted: 06/27/2019] [Indexed: 12/14/2022] Open
Abstract
Distyly is a genetically controlled flower polymorphism that has intrigued both botanists and evolutionary biologists ever since Darwin's time. Despite extensive reports on the pollination and evolution of distylous systems, the genetic basis and mechanism of molecular regulation remain unclear. In the present study, comparative transcriptome profiling was conducted in primrose (Primula oreodoxa), the prime research model for heterostyly. Thirty-six transcriptomes were sequenced for styles at different stages and corolla tube in the three morphs of P. oreodoxa. Large numbers of differentially expressed genes (DEGs) were detected in the transcriptomes of styles across different morphs. Several transcription factors (TFs) and phytohormone metabolism-related genes were highlighted in S-morphs. A growing number of genes showed differential expression patterns along with the development of styles, suggesting that the genetic control of distyly may be more complicated than ever expected. Analysis of co-expression networks and module-trait relationships identified modules significantly associated with style development. CYP734A50, a key S-locus gene whose products degrade brassinosteroids, was co-expressed with many genes in the module and showed significant negative association with style length. In addition, crucial TFs involved in phytohormone signaling pathways were found to be connected with CYP734A50 in the co-expression module. Our global transcriptomic analysis has identified DEGs that are potentially involved in regulation of style length in P. oreodoxa, and may shed light on the evolution and broad biological processes of heterostyly.
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20
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Shao JW, Wang HF, Fang SP, Conti E, Chen YJ, Zhu HM. Intraspecific variation of self-incompatibility in the distylous plant Primula merrilliana. AOB PLANTS 2019; 11:plz030. [PMID: 32489575 PMCID: PMC6557196 DOI: 10.1093/aobpla/plz030] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Revised: 04/16/2019] [Accepted: 05/15/2019] [Indexed: 05/09/2023]
Abstract
Heteromorphic self-incompatibility can prevent self- and intramorph fertilization while favouring intermorph mating and the maintenance of morph-ratio stability in heterostylous populations. However, variation in the expression of self-incompatibility intraspecies has seldom been assessed. Through hand pollinations and microsatellite markers, the variation in the expression of self-incompatibility and genetic diversity were studied in distylous plant Primula merrilliana. We discovered that the strength of self-incompatibility varied extensively among individuals and populations, from pronounced to weaker self-incompatibility in distylous populations, all the way to strong self-compatibility in homostylous populations. Each distylous population included self-incompatible (SI), partly self-compatible (PSC) and self-compatible (SC) individuals, with the index of self-compatibility (ISC) ranging from 0.07 to 0.68 across populations. Self-compatible populations (ISC > 0.25) were not genetically clustered but were more closely related to populations with high SI and SC individuals were mixed with SI individuals within populations. The ISC and the proportions of SC and PSC individuals were higher in peripheral than in central populations, but no decrease of genetic diversity and no deviations of floral morph ratio from isoplethy were detected in peripheral populations. Additionally, the expression of self-incompatibility was stronger in long-styled flowers than in short-styled flowers. The variation in the strength of self-incompatibility documented in P. merrilliana cautions against the estimation of ISC from a few individuals or populations in distylous species and provides a more complex and nuanced understanding of the role of self-incompatibility in heterostyly.
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Affiliation(s)
- Jian-Wen Shao
- College of Life Sciences, Anhui Normal University, Wuhu, P.R. China
- The Key Laboratory of Conservation and Employment of Biological Resources of Anhui, Wuhu, P.R. China
| | - Hui-Feng Wang
- College of Life Sciences, Anhui Normal University, Wuhu, P.R. China
| | - Su-Ping Fang
- College of Life Sciences, Anhui Normal University, Wuhu, P.R. China
| | - Elena Conti
- Department of Systematic and Evolutionary Botany and Botanic Garden, University of Zurich, Zollikerstrasse, Zurich, Switzerland
| | - Ya-Jing Chen
- College of Life Sciences, Anhui Normal University, Wuhu, P.R. China
| | - Hu-Ming Zhu
- College of Life Sciences, Anhui Normal University, Wuhu, P.R. China
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21
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Wang X, Zhong L, Wu Z, Sun H, Wang H, Li D, Barrett SCH, Zhou W. Characterization of 30 microsatellite markers in distylous Primula sinolisteri (Primulaceae) using HiSeq sequencing. APPLICATIONS IN PLANT SCIENCES 2019; 7:e01208. [PMID: 30693154 PMCID: PMC6342175 DOI: 10.1002/aps3.1208] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Accepted: 10/23/2018] [Indexed: 06/09/2023]
Abstract
PREMISE OF THE STUDY Microsatellite markers were developed for Primula sinolisteri, a perennial distylous herb belonging to section Obconicolisteri (Primulaceae), to facilitate future investigations of the population genetics and mating patterns of populations in this species. METHODS AND RESULTS We developed 30 microsatellite markers for P. sinolisteri using HiSeq X-Ten sequencing and measured polymorphism and genetic diversity in a sample of 36 individuals from three natural populations. The markers displayed relatively high polymorphism, with the number of observed alleles per locus ranging from one to 19 (mean = 4.42). The observed and expected heterozygosity ranged from 0-1.000 and 0.083-0.882, respectively. Twenty-nine of the loci were also successfully amplified in homostylous P. sinolisteri var. aspera. CONCLUSIONS The microsatellite markers we have identified in P. sinolisteri provide powerful tools for investigating patterns of population genetic diversity and the evolutionary relationships between heterostyly and homostyly in this species.
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Affiliation(s)
- Xinjia Wang
- Key Laboratory for Plant Diversity and Biogeography of East AsiaKunming Institute of BotanyChinese Academy of SciencesKunming650201YunnanPeople's Republic of China
- University of the Chinese Academy of SciencesBeijing100049People's Republic of China
| | - Li Zhong
- Key Laboratory for Plant Diversity and Biogeography of East AsiaKunming Institute of BotanyChinese Academy of SciencesKunming650201YunnanPeople's Republic of China
- University of the Chinese Academy of SciencesBeijing100049People's Republic of China
| | - Zhikun Wu
- Department of PharmacyGuiyang University of Traditional Chinese MedicineGuiyang550002GuizhouPeople's Republic of China
| | - Huaying Sun
- Key Laboratory for Plant Diversity and Biogeography of East AsiaKunming Institute of BotanyChinese Academy of SciencesKunming650201YunnanPeople's Republic of China
| | - Hong Wang
- Key Laboratory for Plant Diversity and Biogeography of East AsiaKunming Institute of BotanyChinese Academy of SciencesKunming650201YunnanPeople's Republic of China
| | - Dezhu Li
- Plant Germplasm and Genomics CenterGermplasm Bank of Wild SpeciesKunming Institute of BotanyChinese Academy of SciencesKunming650201YunnanPeople's Republic of China
| | - Spencer C. H. Barrett
- Department of Ecology and Evolutionary BiologyUniversity of TorontoTorontoOntarioM5S 3B2Canada
| | - Wei Zhou
- Plant Germplasm and Genomics CenterGermplasm Bank of Wild SpeciesKunming Institute of BotanyChinese Academy of SciencesKunming650201YunnanPeople's Republic of China
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22
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Yu H, Favre A, Sui X, Chen Z, Qi W, Xie G. Mapping the genetic patterns of plants in the region of the Qinghai-Tibet Plateau: Implications for conservation strategies. DIVERS DISTRIB 2018. [DOI: 10.1111/ddi.12847] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Affiliation(s)
- Haibin Yu
- School of Life Sciences; Guangzhou University; Guangzhou China
| | - Adrien Favre
- Senckenberg Research Institute and Natural History Museum; Frankfurt am Main Germany
| | - Xinghua Sui
- State Key Laboratory of Biocontrol; School of Life Sciences; Sun Yat-sen University; Guangzhou China
| | - Zhao Chen
- Guangdong Institute of Eco-environmental Science & Technology; Guangzhou China
| | - Wei Qi
- Institute of Polar Meteorology; Chinese Academy of Meteorological Sciences; Beijing China
| | - Guowen Xie
- School of Life Sciences; Guangzhou University; Guangzhou China
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23
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Jiang XF, Zhu XF, Li QJ. Variation in the degree of reciprocal herkogamy affects the degree of legitimate pollination in a distylous species. AOB PLANTS 2018; 10:ply022. [PMID: 29765587 PMCID: PMC5941151 DOI: 10.1093/aobpla/ply022] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Accepted: 04/23/2018] [Indexed: 06/08/2023]
Abstract
Distyly is a widespread floral polymorphism characterized by the flowers within a population showing reciprocal placement of the anthers and stigma. Darwin hypothesizes that distyly evolves to promote precise pollen transfer between morphs. Primula chungensis exhibits two types of anther heights, and these two types of anthers show pollen of two different size classes. To understand whether the stigma could capture more pollen grains from the anthers of the pollen donor as the separation between the stigma of pollen receiver and the anther of pollen donor decreased, the present research assessed the source of the pollen load in a series of open-pollinated flowers with continuous variation of style lengths. Individuals with continuous variation of style length were tagged, and the selected flowers in the tagged plants were emasculated the day before dehiscence. The stigma of the emasculated flowers was fixed in fuchsin gel at the end of blooming. We assessed the pollen sources on each stigma by taking photos under a microscope and measured the diameter of each conspecific pollen grain with ImageJ. We found that a shorter distance from the stigmas to the anthers of a pollen donor gave the flower a higher capacity to receive pollen from those anthers. Our result provides a new evidence that distyly could promote the pollen transfer between morphs, which is consistent with Darwin's hypothesis of disassortative pollination. An alternative hypothesis for the evolution of distyly (e.g. selfing avoidance) might also be true, but less likely, because self-incompatibility would greatly avoid self-fertilization for many distylous species.
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Affiliation(s)
- Xian-Feng Jiang
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xing-Fu Zhu
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, China
| | - Qing-Jun Li
- Laboratory of Ecology and Evolutionary Biology, State Key Laboratory in Conservation and Utilization of Bioresources in Yunnan, Yunnan University, Kunming, Yunnan, China
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24
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Yuan S, Barrett SCH, Li C, Li X, Xie K, Zhang D. Genetics of distyly and homostyly in a self-compatible Primula. Heredity (Edinb) 2018; 122:110-119. [PMID: 29728676 DOI: 10.1038/s41437-018-0081-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2017] [Revised: 03/16/2018] [Accepted: 03/17/2018] [Indexed: 12/23/2022] Open
Abstract
The transition from outcrossing to selfing through the breakdown of distyly to homostyly has occurred repeatedly among families of flowering plants. Homostyles can originate by major gene changes at the S-locus linkage group, or by unlinked polygenic modifiers. Here, we investigate the inheritance of distyly and homostyly in Primula oreodoxa, a subalpine herb endemic to Sichuan, China. Controlled self- and cross-pollinations confirmed that P. oreodoxa unlike most heterostylous species is fully self-compatible. Segregation patterns indicated that the inheritance of distyly is governed by a single Mendelian locus with the short-styled morph carrying at least one dominant S-allele (S-) and long-styled plants homozygous recessive (ss). Crossing data were consistent with a model in which homostyly results from genetic changes at the distylous linkage group, with the homostylous allele (Sh) dominant to the long-styled allele (s), but recessive to the short-styled allele (S). Progeny tests of open-pollinated seed families revealed high rates of intermorph mating in the L-morph but considerable selfing and possibly intramorph mating in the S-morph and in homostyles. S-morph plants homozygous at the S-locus (SS) occurred in several populations but may experience viability selection. The crossing data from distylous and homostylous plants are consistent with either recombination at the S-locus governing distyly, or mutation at gene(s) controlling sex-organ height; both models predict the same patterns of segregation. Recent studies on the molecular genetics of distyly in Primula demonstrating the hemizygous nature of genes at the S-locus make it more likely that homostyles have resulted from mutation rather than recombination.
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Affiliation(s)
- Shuai Yuan
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.,University of Chinese Academy of Sciences, Beijing, 10049, China
| | - Spencer C H Barrett
- Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcocks St., Toronto, Ontario, M5S 3B2, Canada
| | - Cehong Li
- Biological Resources Research Station at E'mei Mountain, Sichuan, Leshan, 614201, China
| | - Xiaojie Li
- Biological Resources Research Station at E'mei Mountain, Sichuan, Leshan, 614201, China
| | - Kongping Xie
- Biological Resources Research Station at E'mei Mountain, Sichuan, Leshan, 614201, China
| | - Dianxiang Zhang
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
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25
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Yuan S, Barrett SCH, Duan T, Qian X, Shi M, Zhang D. Ecological correlates and genetic consequences of evolutionary transitions from distyly to homostyly. ANNALS OF BOTANY 2017; 120:775-789. [PMID: 28961784 PMCID: PMC5691548 DOI: 10.1093/aob/mcx098] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2017] [Accepted: 07/29/2017] [Indexed: 05/24/2023]
Abstract
BACKGROUND AND AIMS The outbreeding floral polymorphism heterostyly frequently breaks down, resulting in the evolution of self-fertilization as a result of homostyle formation. Here, the loss of floral polymorphism in distylous Primula oreodoxa, a sub-alpine species restricted to western Sichuan, China, was examined by investigating the ecological correlates and genetic consequences of mating system transitions. Several key questions were addressed. (1) What are the frequencies, geographical distribution and reproductive characteristics of floral morphs in distylous and homostylous populations? (2) Does increased elevation influence pollinator service and the likelihood of inbreeding in populations? (3) How often has homostyly originated and what are the consequences of the breakdown of distyly for the amounts and distribution of genetic diversity in populations? METHODS Fourteen populations throughout the range of P. oreodoxa were sampled, and morph frequencies and floral characteristics were recorded. Polymorphism at microsatellite loci and chloroplast DNA (cpDNA) variation were used to quantify population genetic structure and genetic relationships among populations. Controlled pollinations and studies of pollen tube growth and fertility were conducted to determine the compatibility status of populations and their facility for autonomous self-pollination. Finally, visitation rates of long- and short-tongued pollinators to distylous and homostylous populations at different elevations were compared to determine if increased elevation was associated with deterioration in pollinator service. KEY RESULTS In contrast to most heterostylous species, both distylous and homostylous morphs of P. oreodoxa are highly self-compatible, but only homostyles have the facility for autonomous self-pollination. Homostyles set significantly more fruit and seeds following open pollination than the distylous morphs. Visitation by long-tongued pollinators was significantly lower in homostylous populations, and overall rates of insect visitation decreased with elevation. Genetic diversity was significantly lower in homostylous populations, with evidence of increased inbreeding at higher elevation. Patterns of cpDNA variation were consistent with multiple transitions from distyly to homostyly and limited gene flow among populations. CONCLUSIONS The results of this study support the hypothesis that the multiple loss of floral polymorphism in distylous P. oreodoxa is associated with unsatisfactory pollinator service, with homostyles benefiting from reproductive assurance as a result of autonomous self-pollination.
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Affiliation(s)
- Shuai Yuan
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Spencer C H Barrett
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada
| | - Tingting Duan
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- Guangdong Ocean University, Zhanjiang, China
| | - Xin Qian
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Miaomiao Shi
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Dianxiang Zhang
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
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